Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 ID=Chr13-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58321163
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 747533 characters in sequence are not A, C, G, or T
File 177 of 199
Found at i:51076717 original size:29 final size:28
Alignment explanation
Indices: 51076683--51076756 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 28
51076673 GTGTCTGGCC
*
51076683 GTGTGACAGGCCGTGTGTGACACACAGGCA
1 GTGTGACAGGCCGTGTGCGACACAC-GG-A
*
51076713 -TGTGACAAGCCGTGTGCGACACACGGA
1 GTGTGACAGGCCGTGTGCGACACACGGA
51076740 TGTGTGACAGGCCGTGT
1 -GTGTGACAGGCCGTGT
51076757 ACGAGGCCAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
27 1 0.03
28 2 0.05
29 36 0.92
ACGTcount: A:0.22, C:0.23, G:0.36, T:0.19
Consensus pattern (28 bp):
GTGTGACAGGCCGTGTGCGACACACGGA
Found at i:51084348 original size:29 final size:29
Alignment explanation
Indices: 51084306--51084411 Score: 140
Period size: 29 Copynumber: 3.7 Consensus size: 29
51084296 TGCCTGGCTG
*
51084306 TGTGACAGGCCGTGTGTGACACACGGGCA
1 TGTGACAGGCCGTGTGCGACACACGGGCA
* *
51084335 TGTGACAAGCCGTGTGCGACACACGGGCG
1 TGTGACAGGCCGTGTGCGACACACGGGCA
* * *
51084364 TTTGATAGGCCGTGTGCGACACACGGGCG
1 TGTGACAGGCCGTGTGCGACACACGGGCA
* *
51084393 TTTGATAGGCCGTGTGCGA
1 TGTGACAGGCCGTGTGCGA
51084412 GGCCGTGTGT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 71 1.00
ACGTcount: A:0.19, C:0.24, G:0.38, T:0.20
Consensus pattern (29 bp):
TGTGACAGGCCGTGTGCGACACACGGGCA
Found at i:51088580 original size:2 final size:2
Alignment explanation
Indices: 51088573--51088601 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
51088563 TGTAGTATGC
51088573 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
51088602 CACTATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:51095933 original size:21 final size:21
Alignment explanation
Indices: 51095882--51095935 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
51095872 ACCAAATTAA
*
51095882 AAGAGTTGAAAGCTCAGTTGC
1 AAGAGTTGACAGCTCAGTTGC
51095903 AAGAGTTGACAGCTCAGTTGC
1 AAGAGTTGACAGCTCAGTTGC
51095924 AAGAGTTGACAG
1 AAGAGTTGACAG
51095936 ATAGAGGTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.22
Consensus pattern (21 bp):
AAGAGTTGACAGCTCAGTTGC
Found at i:51099119 original size:19 final size:18
Alignment explanation
Indices: 51099087--51099122 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
51099077 CAATTTAGAA
*
51099087 ACGAAAATATTAATAATG
1 ACGAAAATAATAATAATG
51099105 ACGATAAATAATAATAAT
1 ACGA-AAATAATAATAAT
51099123 AATAACAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.58, C:0.06, G:0.08, T:0.28
Consensus pattern (18 bp):
ACGAAAATAATAATAATG
Found at i:51099352 original size:3 final size:3
Alignment explanation
Indices: 51099346--51099396 Score: 93
Period size: 3 Copynumber: 17.0 Consensus size: 3
51099336 AGAGGGGAAC
*
51099346 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA TTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
51099394 ATA
1 ATA
51099397 TTTTGAAAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:51099569 original size:3 final size:3
Alignment explanation
Indices: 51099558--51099604 Score: 76
Period size: 3 Copynumber: 15.3 Consensus size: 3
51099548 AAATAATAGC
*
51099558 TAA TGA TAA TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
51099604 T
1 T
51099605 TTAAACTTTG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
3 38 0.93
4 3 0.07
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:51099718 original size:18 final size:18
Alignment explanation
Indices: 51099697--51099740 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
51099687 ATATAAAGAA
51099697 AATAATAATAATAGCAAT
1 AATAATAATAATAGCAAT
* *
51099715 AATAATAATACTAGTAAT
1 AATAATAATAATAGCAAT
51099733 AATAATAA
1 AATAATAA
51099741 CCTAATTAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.30
Consensus pattern (18 bp):
AATAATAATAATAGCAAT
Found at i:51099760 original size:3 final size:3
Alignment explanation
Indices: 51099697--51099740 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
51099687 ATATAAAGAA
** * *
51099697 AAT AAT AAT AAT AGC AAT AAT AAT AAT ACT AGT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
51099741 CCTAATTAGT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:51101831 original size:14 final size:14
Alignment explanation
Indices: 51101812--51101840 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
51101802 AATGTAAAAA
51101812 TGCATAAGCAATGT
1 TGCATAAGCAATGT
51101826 TGCATAAGCAATGT
1 TGCATAAGCAATGT
51101840 T
1 T
51101841 ATGAACATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (14 bp):
TGCATAAGCAATGT
Found at i:51102986 original size:23 final size:23
Alignment explanation
Indices: 51102954--51103003 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
51102944 AAAAAAAAAC
* *
51102954 AGAAAT-AAAAA-AACATAGAAA
1 AGAAATCAAAAACAAAATACAAA
*
51102975 AGAAATCAAAAACAGAATACAAA
1 AGAAATCAAAAACAAAATACAAA
51102998 AGAAAT
1 AGAAAT
51103004 TAAAGGTGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 6 0.25
22 5 0.21
23 13 0.54
ACGTcount: A:0.72, C:0.08, G:0.10, T:0.10
Consensus pattern (23 bp):
AGAAATCAAAAACAAAATACAAA
Found at i:51103711 original size:7 final size:8
Alignment explanation
Indices: 51103694--51103724 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
51103684 ATTTTGTTAA
51103694 TTTATTTT
1 TTTATTTT
51103702 TTTATTTT
1 TTTATTTT
51103710 TTTATTTT
1 TTTATTTT
*
51103718 TTAATTT
1 TTTATTT
51103725 GTCCCCTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTATTTT
Found at i:51103881 original size:4 final size:4
Alignment explanation
Indices: 51103872--51103915 Score: 52
Period size: 4 Copynumber: 11.0 Consensus size: 4
51103862 TATTGTTATG
* * * *
51103872 TTTA TTTA TTTA TTTA TATA TTCA TTCA TTTA TTTA TTTC TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
51103916 ATTTTTTTGT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (4 bp):
TTTA
Found at i:51104045 original size:3 final size:3
Alignment explanation
Indices: 51104039--51104086 Score: 55
Period size: 3 Copynumber: 16.3 Consensus size: 3
51104029 GATTATTACC
* *
51104039 ATT ATT ATT GTT ATT ATT ATT ATT ATT -TT ATT ATGC A-T ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT
51104083 ATT A
1 ATT A
51104087 CACCATTGTT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
2 3 0.08
3 34 0.89
4 1 0.03
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:51108039 original size:27 final size:27
Alignment explanation
Indices: 51107990--51108041 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
51107980 AAAGAATATT
* *
51107990 AGCATGATAAGCCAAGAGTCCCAATGA
1 AGCATGATAAGCCAACAGACCCAATGA
* *
51108017 AGCATGATAAGCCATCTGACCCAAT
1 AGCATGATAAGCCAACAGACCCAAT
51108042 TACTGGCCGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.17
Consensus pattern (27 bp):
AGCATGATAAGCCAACAGACCCAATGA
Found at i:51112116 original size:41 final size:41
Alignment explanation
Indices: 51112004--51112118 Score: 176
Period size: 41 Copynumber: 2.8 Consensus size: 41
51111994 TTTATTGCCA
* * *
51112004 GTGAAACATTTTAGACTTTACATCTAGCAGACTTGATGCCG
1 GTGAAACATTTTAGACTTTACGTCTAGCAGGCTTGACGCCG
* *
51112045 GTGAAACATTTCAGGCTTTACGTCTAGCAGGCTTGACGCCG
1 GTGAAACATTTTAGACTTTACGTCTAGCAGGCTTGACGCCG
*
51112086 GTGAAACATTTTAGACTTTATGTCTAGCAGGCT
1 GTGAAACATTTTAGACTTTACGTCTAGCAGGCT
51112119 AAGTGTCAGT
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 66 1.00
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (41 bp):
GTGAAACATTTTAGACTTTACGTCTAGCAGGCTTGACGCCG
Found at i:51118239 original size:20 final size:20
Alignment explanation
Indices: 51118216--51118258 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
51118206 TAAAGATATT
*
51118216 TATTATGTT-TTATTATTATA
1 TATTATATTATTA-TATTATA
51118236 TATTATATTATTATATTATA
1 TATTATATTATTATATTATA
51118256 TAT
1 TAT
51118259 AAAGTAAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (20 bp):
TATTATATTATTATATTATA
Found at i:51118258 original size:15 final size:15
Alignment explanation
Indices: 51118185--51118251 Score: 53
Period size: 15 Copynumber: 4.3 Consensus size: 15
51118175 AGTTTAATAA
51118185 ATATATTATATTATT
1 ATATATTATATTATT
* * * *
51118200 AAATAATAAAGATATTT
1 ATATATTATA-TTA-TT
* *
51118217 ATTATGTTTTATTATT
1 A-TATATTATATTATT
51118233 ATATATTATATTATT
1 ATATATTATATTATT
51118248 ATAT
1 ATAT
51118252 TATATATAAA
Statistics
Matches: 37, Mismatches: 12, Indels: 6
0.67 0.22 0.11
Matches are distributed among these distances:
15 23 0.62
16 5 0.14
17 5 0.14
18 4 0.11
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (15 bp):
ATATATTATATTATT
Found at i:51119086 original size:37 final size:38
Alignment explanation
Indices: 51119018--51119090 Score: 96
Period size: 37 Copynumber: 1.9 Consensus size: 38
51119008 GTGTGTGGAA
*
51119018 TTGAAATGAATATTGACTTGAAAATGGAAAAGTGAATT
1 TTGAAATGAATATTGACTTGAAAATGAAAAAGTGAATT
* *
51119056 TTGAATTGAAT-TGTGA-TTGAAAGTGAAAAAGTGAA
1 TTGAAATGAATAT-TGACTTGAAAATGAAAAAGTGAA
51119091 ATTGGAGACC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
37 18 0.58
38 13 0.42
ACGTcount: A:0.44, C:0.01, G:0.23, T:0.32
Consensus pattern (38 bp):
TTGAAATGAATATTGACTTGAAAATGAAAAAGTGAATT
Found at i:51119560 original size:7 final size:7
Alignment explanation
Indices: 51119548--51119579 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
51119538 TTGTTATTGT
51119548 TGAAATA
1 TGAAATA
51119555 TGAAATA
1 TGAAATA
51119562 TGAAATA
1 TGAAATA
*
51119569 TGAAATT
1 TGAAATA
51119576 TGAA
1 TGAA
51119580 TTTAAATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.53, C:0.00, G:0.16, T:0.31
Consensus pattern (7 bp):
TGAAATA
Found at i:51121778 original size:21 final size:21
Alignment explanation
Indices: 51121752--51121795 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
51121742 TAAGCTTGAT
51121752 TAAGGCTCGAGTTTAATTGTG
1 TAAGGCTCGAGTTTAATTGTG
51121773 TAAGGCTCGAGTTTAATTGTG
1 TAAGGCTCGAGTTTAATTGTG
51121794 TA
1 TA
51121796 TCATAATATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.09, G:0.27, T:0.39
Consensus pattern (21 bp):
TAAGGCTCGAGTTTAATTGTG
Found at i:51124726 original size:19 final size:19
Alignment explanation
Indices: 51124683--51124726 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
51124673 GTTTTTTTTC
* *
51124683 ATTTTAAAATATTTTTTAT
1 ATTTTTAAATATTTTTAAT
*
51124702 AGTTTTAAATATTTTTAAT
1 ATTTTTAAATATTTTTAAT
51124721 ATTTTT
1 ATTTTT
51124727 TGACTCATCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
ATTTTTAAATATTTTTAAT
Found at i:51125640 original size:171 final size:168
Alignment explanation
Indices: 51125160--51125648 Score: 464
Period size: 171 Copynumber: 2.8 Consensus size: 168
51125150 TTTCTCTCTC
* *
51125160 TCTTTTTTTTTTGACATTATAAAAAGGGGTTAAATTTTAAATTTGATCTCTCTACTTTTTTTTGA
1 TCTTTTTTTTTTGACATTAT-AAAA--GGTTAAATTTCAAATTTGATCCCTCTA--TTTTTTT-A
* * * * * ** * *
51125225 ATTATATAATAATGATCAAATTTCAATTATAATTCTTATATTATGTTTAAATTTGAGTTTTGATC
60 ATTATATAAAAATGATCAAATTTCAATTTTGATCCTTATACTACATTTAAATTTGAGATTTAATC
** * * * *
51125290 TCTATATTTTAATTATCGAGGGCCTTCCTATAAGACACATCGGTT
125 TCTATATTTTAATT-TTTAAGCCCTTCCAATAAGACACATCGCTT
* * * * *
51125335 TC-TTTTTATTTGACATTATAAGAAGTGGTCAATTTTCAAATTTGATCCTTCTACTTTTTTAAAT
1 TCTTTTTTTTTTGACATTATAA-AA--GGTTAAATTTCAAATTTGATCCCTCTA-TTTTTTTAAT
* * * * * *
51125399 AATATAAAAATGGTTAAATTTTAA-TTTGGTCCTTATACTACATTCAAATTTGAGATTTAATCTC
62 TATATAAAAATGATCAAATTTCAATTTTGATCCTTATACTACATTTAAATTTGAGATTTAATCTC
* * *
51125463 TATATTTTAATTTTTAAGCCCTTTCAATAAGACTTCTGTC-CTT
127 TATATTTTAATTTTTAAGCCCTTCCAATAAGAC-AC-ATCGCTT
* *
51125506 TCCTTTTTTTTTTGACATTATAAAAGGTTGAATTTCAATTTTGATCCCTCTATTTTTTTCAAGTT
1 T-CTTTTTTTTTTGACATTATAAAAGGTTAAATTTCAAATTTGATCCCTCTATTTTTTT-AA-TT
* * * * *
51125571 ATATAACAATGATCAAAATTCAATTTTGATCCCTATACTACATTTAAATTTAAGATTTAAACT-T
63 ATATAAAAATGATCAAATTTCAATTTTGATCCTTATACTACATTTAAATTTGAGATTTAATCTCT
51125635 ATATTTTAATTTTT
128 ATATTTTAATTTTT
51125649 GACAAACTCT
Statistics
Matches: 255, Mismatches: 51, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
169 6 0.02
170 39 0.15
171 80 0.31
172 61 0.24
173 26 0.10
174 41 0.16
175 2 0.01
ACGTcount: A:0.31, C:0.12, G:0.09, T:0.48
Consensus pattern (168 bp):
TCTTTTTTTTTTGACATTATAAAAGGTTAAATTTCAAATTTGATCCCTCTATTTTTTTAATTATA
TAAAAATGATCAAATTTCAATTTTGATCCTTATACTACATTTAAATTTGAGATTTAATCTCTATA
TTTTAATTTTTAAGCCCTTCCAATAAGACACATCGCTT
Found at i:51125943 original size:370 final size:373
Alignment explanation
Indices: 51125347--51126020 Score: 846
Period size: 370 Copynumber: 1.8 Consensus size: 373
51125337 TTTTTATTTG
* * * * * *
51125347 ACATTATAAGAAGTGGTCAATTTTCAAATTTGATCCTTCTACTTTTTTAAATAATATAAAAATGG
1 ACATTATAAGAAATAGTCAAATTTAAAATTTCATCCCTCTACTTTTTTAAATAATATAAAAATGG
* * *
51125412 TTAAATTTTAATTTGGTCCTTATACTACATTCAAATTTGAGATTTAATCTCTATATTTTAATTTT
66 TTAAATTTCAATTTGATCCCTATACTACATTCAAATTTGAGATTTAATCTCTATATTTTAATTTT
* *
51125477 TAAGCCCTTTCAATAAGACTTCTGTCCTTTCCTTTTTTTTTTGACATTATAAAAGGTTGAATTTC
131 TAAGCCC--TC-ATAAGACTACTGTCCTTTCCTTTTTTTTTTGACATTATAAAAGGTTGAAATTC
* * * * *
51125542 AATTTTGATCCCTCTATTTTTTTCAAGTTATATAACAAT-GATCAAAAT-TCAATTTTGATCCCT
193 AAATGTGATCCCTCTATTTTTTTCAAGTTATACAACAATAG-TC-AAATGTCAAGTTTAAT-CCT
*
51125605 ATACTACATTTAAATTTAAGATTTAAAC-TTATATTTTAATTTTTGACAAACTCTTTATAAAAGA
255 ATACTACATTCAAATTTAAGATTTAAACTTTATATTTTAATTTTTGACAAACTCTTTATAAAAGA
51125669 AAGTTCCTATGACCTTCCTATAAGATAAACGTCCCTTTTTCTTTTTTCCTTTTT
320 AAGTTCCTATGACCTTCCTATAAGATAAACGTCCCTTTTTCTTTTTTCCTTTTT
* * * * **
51125723 ACATTATAAGAAATAGTTAAATTTAAAATTTCATCCCTCTA-TTTTTTGAGTTATATAATGATGG
1 ACATTATAAGAAATAGTCAAATTTAAAATTTCATCCCTCTACTTTTTTAAATAATATAAAAATGG
* ** * *
51125787 TTAAATTTCAATTTTGATCCCTATATTATGTTTAAATTTGAGATTTAATTTCTATATTTTAATTT
66 TTAAATTTCAA-TTTGATCCCTATACTACATTCAAATTTGAGATTTAATCTCTATATTTTAATTT
* **
51125852 TTCAGGGC-C-T-AGAC-ACATGTCCTTTTCC-TTTTTTTTTGACATTATAAATA-GTTGAAATT
130 TTAAGCCCTCATAAGACTAC-TGTCC-TTTCCTTTTTTTTTTGACATTATAAA-AGGTTGAAATT
* * *
51125911 CAAATGTGATCCCTCTATTTTTTTCGAGTTATACAATAATAGTCAAATGTTAAGTTTAATCCTAT
192 CAAATGTGATCCCTCTATTTTTTTCAAGTTATACAACAATAGTCAAATGTCAAGTTTAATCCTAT
** * *
51125976 ACTATGTTCAAATTTGAGATTTAATCTTTATATTTTAATTTTTGA
257 ACTACATTCAAATTTAAGATTTAAACTTTATATTTTAATTTTTGA
51126021 AGACCTTATG
Statistics
Matches: 253, Mismatches: 38, Indels: 20
0.81 0.12 0.06
Matches are distributed among these distances:
369 31 0.12
370 100 0.40
371 8 0.03
373 1 0.00
375 28 0.11
376 85 0.34
ACGTcount: A:0.32, C:0.13, G:0.09, T:0.46
Consensus pattern (373 bp):
ACATTATAAGAAATAGTCAAATTTAAAATTTCATCCCTCTACTTTTTTAAATAATATAAAAATGG
TTAAATTTCAATTTGATCCCTATACTACATTCAAATTTGAGATTTAATCTCTATATTTTAATTTT
TAAGCCCTCATAAGACTACTGTCCTTTCCTTTTTTTTTTGACATTATAAAAGGTTGAAATTCAAA
TGTGATCCCTCTATTTTTTTCAAGTTATACAACAATAGTCAAATGTCAAGTTTAATCCTATACTA
CATTCAAATTTAAGATTTAAACTTTATATTTTAATTTTTGACAAACTCTTTATAAAAGAAAGTTC
CTATGACCTTCCTATAAGATAAACGTCCCTTTTTCTTTTTTCCTTTTT
Found at i:51133284 original size:111 final size:110
Alignment explanation
Indices: 51132941--51133337 Score: 591
Period size: 111 Copynumber: 3.6 Consensus size: 110
51132931 GTCAATCGAG
* * * * **
51132941 AAATCGAAACCCAGAACCTTAGGGTACG-TTTCTCGAATTTCCAAACGCAAAATATTATCTTACT
1 AAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTA-T
** *
51133005 TCGAAAATTTTTTAAAAGGATATTTAGCCATTTGGTTGAACGAGAA
65 TTTAAAATTTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
* *
51133051 AAATCGACACCCAGTACCTTAGGGCACGTTCTCTCGAATTTCCCAAACGCAAAACATTGCCTTAT
1 AAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTT-CCAAACGCAAAACATTGCCTTAT
51133116 TTTAAAA-TTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
65 TTTAAAATTTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
*
51133161 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
1 AAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
*
51133226 TTAAAATTTTTTTTAAAGGATATTAAGCCATTTGGTTGAACGAGAA
66 TTAAAA-TTTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
* * * * *
51133272 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAATGCTAAATATTGCCTCATT
1 AAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
51133337 T
66 T
51133338 AGAAAAATTT
Statistics
Matches: 265, Mismatches: 18, Indels: 7
0.91 0.06 0.02
Matches are distributed among these distances:
109 30 0.11
110 100 0.38
111 116 0.44
112 19 0.07
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (110 bp):
AAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
TTAAAATTTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
Found at i:51133874 original size:3 final size:3
Alignment explanation
Indices: 51133868--51133892 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
51133858 GACGACGACG
51133868 ACA ACA ACA ACA ACA ACA ACA ACA A
1 ACA ACA ACA ACA ACA ACA ACA ACA A
51133893 TAATAATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:51135415 original size:44 final size:43
Alignment explanation
Indices: 51135368--51136406 Score: 248
Period size: 44 Copynumber: 24.0 Consensus size: 43
51135358 AGAGGTATTG
*
51135368 GATTCATCATTTTAATCTGCTCCACTGCAACTTCAGGGAGATAG
1 GATTCAT-ATTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
** * * * *
51135412 GATT-GGA-TGTGATCTGCTCTACTGCAACTTCAGAGAGATAA
1 GATTCATATTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
**** * * *
51135453 GATCTGGGGTTTTAATCCGCTCCACTGCAACTTTAGGGAGATAG
1 GAT-TCATATTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
* * ** *
51135497 GATTGATTTCTTTCGTCTGCTCCACTGCAATTTCAGGGAGATAA
1 GATTCATAT-TTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
* * * * * * *
51135541 GACT-GTA-TGTGATCTACTCTACTGCAACTTCAGAGAGATAA
1 GATTCATATTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
* * * ** *
51135582 GATCCTTTATTTTAATCCGCTCCACTATAACTTCAGGGAGATAG
1 GATTC-ATATTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
* * ** *
51135626 GATTGATTTCTTTCGTCTGCTCTACTGCAACTTCAGGGAGATAA
1 GATTCATAT-TTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
* * * * * * ***
51135670 GACT-GTA-TGTGATCTACTCTACTGCAACTTCAAAAAGATAA
1 GATTCATATTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
* * * * *
51135711 GATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAG
1 GATTC-ATATTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
* ** ** * *
51135755 GA-T-AGTGTCTTCGATCCACTCCGCTGTAATCTT-AGGGAGATAA
1 GATTCA-TAT-TTTAATCTGCTCCACTGCAA-CTTCAGGGAGATAA
** * * *
51135798 GATCTC-TGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAA
1 GAT-TCAT-ATTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
* * ** * * * *
51135842 GATCTGAAATTCTTCGGTCTACTCTACTGTAACCTCAGGGAGATAA
1 GAT-TCATATT-TT-AATCTGCTCCACTGCAACTTCAGGGAGATAA
* * * * ** * *
51135888 GA--CCTGA-TGTGATC-ACTCTGCTGTAACTTCAGAGAGATAA
1 GATTCAT-ATTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
* * * * *
51135928 GATCCTTTATTTTAAT-TCGCTCCACTGTAACTTCAGGGCGATAG
1 GATTC-ATATTTTAATCT-GCTCCACTGCAACTTCAGGGAGATAA
* * * *
51135972 GA-T-AGTGTCTTTGATCTGCTCCGCTGTAA-TCTCAGGGAGATAA
1 GATTCA-TAT-TTTAATCTGCTCCACTGCAACT-TCAGGGAGATAA
** * * *
51136015 GATCTC-TGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAA
1 GAT-TCAT-ATTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
* * ** * * * *
51136059 GATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAAGGAGATAA
1 GAT-TCATATT-TT-AATCTGCTCCACTGCAACTTCAGGGAGATAA
* *** * ** * *
51136105 GA--CCTGA-TGCGATCTACTCTGCTGTAACTTCAGAGAGATAA
1 GATTCAT-ATTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
* * *
51136146 GATT-ATTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAG
1 GATTCA--TATTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
* ** * * *
51136190 GA-T-AGTGTCTTCGATCTGCTCCGCTGTAA-TCTCAAGGAGATAA
1 GATTCA-TAT-TTTAATCTGCTCCACTGCAACT-TCAGGGAGATAA
* * * *
51136233 GATCTC-TGACTTCAATCTGCTCCACTGTAACCTCAGGGAGATAA
1 GAT-TCAT-ATTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
* * ** * *
51136277 GATCTGAAATTTTTCGGTCTGCTCCACTGTAACCTCAGGGAGATAA
1 GAT-TCATA-TTTT-AATCTGCTCCACTGCAACTTCAGGGAGATAA
* *** * ** * *
51136323 GA--CCTGA-TGCGATCTACTCTGCTGTAACTTCAGAGAGATAA
1 GATTCAT-ATTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
* * * *
51136364 GATCCTTTATTTTAATCCGCTTCACTGCAACTTCAGGGAGATA
1 GATTC-ATATTTTAATCTGCTCCACTGCAACTTCAGGGAGATA
51136407 GGATAGTGTC
Statistics
Matches: 729, Mismatches: 204, Indels: 124
0.69 0.19 0.12
Matches are distributed among these distances:
40 25 0.03
41 147 0.20
42 14 0.02
43 110 0.15
44 335 0.46
45 9 0.01
46 89 0.12
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (43 bp):
GATTCATATTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
Found at i:51135564 original size:129 final size:129
Alignment explanation
Indices: 51135383--51135757 Score: 608
Period size: 129 Copynumber: 2.9 Consensus size: 129
51135373 ATCATTTTAA
* * * *
51135383 TCTGCTCCACTGCAACTTCAGGGAGATAGGATTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGTATGTGATCTACTCTACTGCAACTTCAGAGA
*** * *
51135448 GATAAGAT-CTGGGGTTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTGATTTCTTTCG
66 GATAAGATCCT-TTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTGATTTCTTTCG
*
51135512 TCTGCTCCACTGCAATTTCAGGGAGATAAGACTGTATGTGATCTACTCTACTGCAACTTCAGAGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGTATGTGATCTACTCTACTGCAACTTCAGAGA
*
51135577 GATAAGATCCTTTATTTTAATCCGCTCCACTATAACTTCAGGGAGATAGGATTGATTTCTTTCG
66 GATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTGATTTCTTTCG
* * *
51135641 TCTGCTCTACTGCAACTTCAGGGAGATAAGACTGTATGTGATCTACTCTACTGCAACTTCAAAAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGTATGTGATCTACTCTACTGCAACTTCAGAGA
51135706 GATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGAT
66 GATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGAT
51135758 AGTGTCTTCG
Statistics
Matches: 229, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
129 227 0.99
130 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.32
Consensus pattern (129 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGTATGTGATCTACTCTACTGCAACTTCAGAGA
GATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTGATTTCTTTCG
Found at i:51135901 original size:218 final size:218
Alignment explanation
Indices: 51135595--51136719 Score: 1819
Period size: 218 Copynumber: 5.2 Consensus size: 218
51135585 CCTTTATTTT
* * * * * * * *
51135595 AATCCGCTCCACTATAACTTCAGGGAGATAGGAT-TG-ATTTCTTTC-GTCTGCTCTACTGCAAC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTC-TTCGGTCTACTCCACTGTAAC
* * * * * *
51135657 TTCAGGGAGATAAGA-CTGTATGTGATCTACTCTACTGCAACTTCAAAAAGATAAGATCCTTTAT
65 CTCAGGGAGATAAGACCTG-ATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTAT
**
51135721 TTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCCACTCCGCTGTAATC
129 TTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATC
*
51135786 TTAGGGAGATAAGATCTCTGGCTTC
194 TCAGGGAGATAAGATCTCTGGCTTC
*
51135811 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCTACTGTAACC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACC
*
51135876 TCAGGGAGATAAGACCTGATGTGATC-ACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTT
66 TCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTT
* * *
51135940 TAATTCGCTCCACTGTAACTTCAGGGCGATAGGATAGTGTCTTTGATCTGCTCCGCTGTAATCTC
131 TAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTC
51136005 AGGGAGATAAGATCTCTGGCTTC
196 AGGGAGATAAGATCTCTGGCTTC
51136028 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACC
* **
51136093 TCAAGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATTATTTATTT
66 TCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTT
51136158 TAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTC
131 TAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTC
* *
51136223 AAGGAGATAAGATCTCTGACTTC
196 AGGGAGATAAGATCTCTGGCTTC
* *
51136246 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGCTCCACTGTAACC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACC
51136311 TCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTT
66 TCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTT
* * *
51136376 TAATCCGCTTCACTGCAACTTCAGGGAGATAGGATAGTGTCTTCGATCTCCTCCGCTGTAATCTC
131 TAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTC
51136441 AGGGAGATAAGATCTCTGGCTTC
196 AGGGAGATAAGATCTCTGGCTTC
* * *
51136464 AATCTGCTTCACTGTAACCTCAGAGAGATAAGATCTGAAATTTTTCGGTCTACTCCACTGTAACC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACC
* * **
51136529 TCAGGGACATAAAACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATTATTTATTT
66 TCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTT
51136594 TAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTC
131 TAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTC
*
51136659 AAGGAGATAAGATCTCTGGCTTC
196 AGGGAGATAAGATCTCTGGCTTC
* *
51136682 AATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGA
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGA
51136720 TGCGATCTAC
Statistics
Matches: 851, Mismatches: 53, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
216 30 0.04
217 209 0.25
218 609 0.72
219 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (218 bp):
AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACC
TCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTT
TAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTC
AGGGAGATAAGATCTCTGGCTTC
Found at i:51136729 original size:390 final size:390
Alignment explanation
Indices: 51136298--51137109 Score: 1419
Period size: 390 Copynumber: 2.1 Consensus size: 390
51136288 TTTCGGTCTG
*
51136298 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATA
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTATAACTTCAGAGAGATA
* * *
51136363 AGATCCTTTATTTTAATCCGCTTCACTGCAACTTCAGGGAGATAGGATAGTGTCTTCGATCTCCT
66 AGATCATTTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATAGTGTCTTCGATCTACT
*
51136428 CCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTTCACTGTAACCTCAGAGAGAT
131 CCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGAGAGAT
51136493 AAGATCTGAAATTTTTCGGTCTACTCCACTGTAACCTCAGGGACATAAAACCTGATGCGATCTAC
196 AAGATCTGAAATTTTTCGGTCTACTCCACTGTAACCTCAGGGACATAAAACCTGATGCGATCTAC
* *
51136558 TCTGCTGTAACTTCAGAGAGATAAGATTATTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGA
261 TCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCACTCCACTGTAACTTCAGGGAGA
*
51136623 TAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAAGG-AGATAAGATCTCTGGCTTCAATCT
326 TAGGATAGTGTCTTCGATCTGCTCCGCTGTAATATC-AGGAAGATAAGATCTCTGGCTTCAATCT
51136687 A
390 A
51136688 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTATAACTTCAGAGAGATA
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTATAACTTCAGAGAGATA
* * *
51136753 AGATCATTTATTTTAATCCGCTCCATTGTAACTTCAGGGAGATAGGATAGTGTCTTTGATCTACT
66 AGATCATTTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATAGTGTCTTCGATCTACT
*
51136818 CCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGAT
131 CCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGAGAGAT
* * * * *
51136883 AATATCTGAAATTTTTCGGTTTACTCCACTGTAACTTCAGGGAGATAAGACCTGATGCGATCTAC
196 AAGATCTGAAATTTTTCGGTCTACTCCACTGTAACCTCAGGGACATAAAACCTGATGCGATCTAC
*
51136948 TCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAACTTCAGGGAGA
261 TCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCACTCCACTGTAACTTCAGGGAGA
* *
51137013 TAGGATAGTGTCTTTGATCTGCTCCGCTGTAATATCAGGAAGATAAGATCTCTGGCTTCAATCTG
326 TAGGATAGTGTCTTCGATCTGCTCCGCTGTAATATCAGGAAGATAAGATCTCTGGCTTCAATCTA
*
51137078 CTCCACTGTAACCTCAGGGAGATAAGATCTGA
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGA
51137110 AATTCTTCGG
Statistics
Matches: 400, Mismatches: 21, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
389 3 0.01
390 397 0.99
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (390 bp):
CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTATAACTTCAGAGAGATA
AGATCATTTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATAGTGTCTTCGATCTACT
CCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGAGAGAT
AAGATCTGAAATTTTTCGGTCTACTCCACTGTAACCTCAGGGACATAAAACCTGATGCGATCTAC
TCTGCTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCACTCCACTGTAACTTCAGGGAGA
TAGGATAGTGTCTTCGATCTGCTCCGCTGTAATATCAGGAAGATAAGATCTCTGGCTTCAATCTA
Found at i:51136743 original size:608 final size:608
Alignment explanation
Indices: 51136076--51137327 Score: 2144
Period size: 608 Copynumber: 2.1 Consensus size: 608
51136066 AATTCTTCGG
* *
51136076 TCTACTCCACTGTAACCTCAAGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGA
1 TCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTATAACTTCAGAGA
*
51136141 GATAAGATTATTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATC
66 GATAAGATCATTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATC
*
51136206 TGCTCCGCTGTAATCTCAAGGAGATAAGATCTCTGACTTCAATCTGCTCCACTGTAACCTCAGGG
131 TACTCCGCTGTAATCTCAAGGAGATAAGATCTCTGACTTCAATCTGCTCCACTGTAACCTCAGGG
*
51136271 AGATAAGATCTGAAATTTTTCGGTCTGCTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGAT
196 AGATAAGATCTGAAATTTTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGAT
* *
51136336 CTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTTCACTGCAACTTCAGG
261 CTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGCAACTTCAGG
* *
51136401 GAGATAGGATAGTGTCTTCGATCTCCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAA
326 GAGATAGGATAGTGTCTTCGATCTCCTCCGCTGTAATATCAGGAAGATAAGATCTCTGGCTTCAA
* *
51136466 TCTGCTTCACTGTAACCTCAGAGAGATAAGATCTGAAATTTTTCGGTCTACTCCACTGTAACCTC
391 TCTGCTCCACTGTAACCTCAGAGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
* * *
51136531 AGGGACATAAAACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATTATTTATTTTA
456 AGGAACATAAAACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTA
* *
51136596 ATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAA
521 ATCCGCTCCACTGTAACTTCAGGGAGAGAGGATAGTGTCTTCGATCTGCTCCGCTGTAATATCAA
51136661 GGAGATAAGATCTCTGGCTTCAA
586 GGAGATAAGATCTCTGGCTTCAA
51136684 TCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTATAACTTCAGAGA
1 TCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTATAACTTCAGAGA
* *
51136749 GATAAGATCATTTATTTTAATCCGCTCCATTGTAACTTCAGGGAGATAGGATAGTGTCTTTGATC
66 GATAAGATCATTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATC
* *
51136814 TACTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGG
131 TACTCCGCTGTAATCTCAAGGAGATAAGATCTCTGACTTCAATCTGCTCCACTGTAACCTCAGGG
* * *
51136879 AGATAATATCTGAAATTTTTCGGTTTACTCCACTGTAACTTCAGGGAGATAAGACCTGATGCGAT
196 AGATAAGATCTGAAATTTTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGAT
*
51136944 CTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAACTTCAGG
261 CTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGCAACTTCAGG
* *
51137009 GAGATAGGATAGTGTCTTTGATCTGCTCCGCTGTAATATCAGGAAGATAAGATCTCTGGCTTCAA
326 GAGATAGGATAGTGTCTTCGATCTCCTCCGCTGTAATATCAGGAAGATAAGATCTCTGGCTTCAA
* * * *
51137074 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCATTGTAACGTT
391 TCTGCTCCACTGTAACCTCAGAGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
* * * * *
51137139 AGGAAGATAAGACCTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTT
456 AGGAACATAAAACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTA
* * *
51137204 ATCCGCTCCACTGTAACTTCAGGGAGAGAGGATAGTGTCTTTGATCTGCTCCGCTGTAATATTAG
521 ATCCGCTCCACTGTAACTTCAGGGAGAGAGGATAGTGTCTTCGATCTGCTCCGCTGTAATATCAA
51137269 GGAGATAAGATCTCTGGCTTCAA
586 GGAGATAAGATCTCTGGCTTCAA
* *
51137292 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGA
1 TCTACTCCACTGTAACCTCAGGGAGATAAGACCTGA
51137328 AATATTCACT
Statistics
Matches: 604, Mismatches: 40, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
608 604 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (608 bp):
TCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTATAACTTCAGAGA
GATAAGATCATTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATC
TACTCCGCTGTAATCTCAAGGAGATAAGATCTCTGACTTCAATCTGCTCCACTGTAACCTCAGGG
AGATAAGATCTGAAATTTTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGAT
CTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGCAACTTCAGG
GAGATAGGATAGTGTCTTCGATCTCCTCCGCTGTAATATCAGGAAGATAAGATCTCTGGCTTCAA
TCTGCTCCACTGTAACCTCAGAGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
AGGAACATAAAACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTA
ATCCGCTCCACTGTAACTTCAGGGAGAGAGGATAGTGTCTTCGATCTGCTCCGCTGTAATATCAA
GGAGATAAGATCTCTGGCTTCAA
Found at i:51136790 original size:85 final size:85
Alignment explanation
Indices: 51136080--51136884 Score: 357
Period size: 87 Copynumber: 9.3 Consensus size: 85
51136070 CTTCGGTCTA
*
51136080 CTCCACTGTAACCTCAAGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATA
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATA
*
51136145 AGATTATTTATTTTAATCCG
66 AGATCATTTATTTTAATCCG
* * ** * * * *
51136165 CTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAA-TCTCA-AGGA
1 CTCCACTGTAACCTCAGGGAGATAAGA-CCTG-ATGCGATCTACTCTGCTGTAACT-TCAGA-GA
* * * *
51136228 GATAAGATC-TCTGACTTCAATCTG
62 GATAAGATCAT-TTATTTTAATCCG
* * * * ** * *
51136252 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTTTTCGGTCTGCTCCACTGTAACCTCAGGG
1 CTCCACTGTAACCTCAGGGAGATAAGACCTG--A---TGCGATCTACTCTGCTGTAACTTCAGAG
* * *** **
51136317 AGATAAGA-C-CTGA-TGCGATCTA
61 AGATAAGATCATTTATTTTAATCCG
** * * * *** ** * * *
51136339 CTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCT-TCACTGCAACTTCAGGGA
1 CTCCACTGTAACCTCAGGGAGATAAGA-CC-TGA-TGCGATCTACTCT-GCTGTAACTTCAGAGA
* * * **
51136403 GATAGGAT-AGTGT-CTTCGATCTC-
62 GATAAGATCA-TTTATTTTAATC-CG
* * * * * * * *
51136426 CTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCT-TCACTGTAACCTCAGAGA
1 CTCCACTGTAACCTCAGGGAGATAAGA-C-CT-GATGCGATCTACTCT-GCTGTAACTTCAGAGA
* *** **
51136490 GATAAGATCTGAAATT-TTTCGGTCTA
62 GATAAGATC---ATTTATTTTAATCCG
* *
51136516 CTCCACTGTAACCTCAGGGACATAAAACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATA
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATA
*
51136581 AGATTATTTATTTTAATCCG
66 AGATCATTTATTTTAATCCG
* * ** * * * *
51136601 CTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAA-TCTCA-AGGA
1 CTCCACTGTAACCTCAGGGAGATAAGA-CCTG-ATGCGATCTACTCTGCTGTAACT-TCAGA-GA
*** * **
51136664 GATAAGATC-TCTGGCTTCAATCTA
62 GATAAGATCAT-TTATTTTAATCCG
*
51136688 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTATAACTTCAGAGAGATA
1 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATA
51136753 AGATCATTTATTTTAATCCG
66 AGATCATTTATTTTAATCCG
* * * ** * ** * *
51136773 CTCCATTGTAACTTCAGGGAGATAGGATAGTGTCTTTGATCTACTCCGCTGTAA-TCTCAGGGAG
1 CTCCACTGTAACCTCAGGGAGATAAGA-CCTG-ATGCGATCTACTCTGCTGTAACT-TCAGAGAG
*** * *
51136837 ATAAGATC-TCTGGCTTCAATCTG
63 ATAAGATCAT-TTATTTTAATCCG
51136860 CTCCACTGTAACCTCAGGGAGATAA
1 CTCCACTGTAACCTCAGGGAGATAA
51136885 TATCTGAAAT
Statistics
Matches: 548, Mismatches: 132, Indels: 78
0.72 0.17 0.10
Matches are distributed among these distances:
84 3 0.01
85 141 0.26
86 21 0.04
87 311 0.57
88 8 0.01
89 3 0.01
90 60 0.11
91 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.30
Consensus pattern (85 bp):
CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATA
AGATCATTTATTTTAATCCG
Found at i:51136910 original size:218 final size:218
Alignment explanation
Indices: 51136684--51137330 Score: 1114
Period size: 218 Copynumber: 3.0 Consensus size: 218
51136674 CTGGCTTCAA
*
51136684 TCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTATAACTTCAGAGA
1 TCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGA
* *
51136749 GATAAGATCATTTATTTTAATCCGCTCCATTGTAACTTCAGGGAGATAGGATAGTGTCTTTGATC
66 GATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTTGATC
* *
51136814 TACTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGG
131 TGCTCCGCTGTAATATCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGG
* *
51136879 AGATAATATCTGAAATTTTTCGG
196 AGATAAGATCTGAAATTCTTCGG
* *
51136902 TTTACTCCACTGTAACTTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGA
1 TCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGA
*
51136967 GATAAGATCCTTTATTTTAATCCACTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTTGATC
66 GATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTTGATC
*
51137032 TGCTCCGCTGTAATATCAGGAAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGG
131 TGCTCCGCTGTAATATCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGG
51137097 AGATAAGATCTGAAATTCTTCGG
196 AGATAAGATCTGAAATTCTTCGG
* * * * * *
51137120 TCTACTCCATTGTAACGTTAGGAAGATAAGACCTGATGTGATCTACTCTACTGTAACTTCAGAGA
1 TCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGA
* *
51137185 GATAAGATCCTTTATTTTTATCCGCTCCACTGTAACTTCAGGGAGAGAGGATAGTGTCTTTGATC
66 GATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTTGATC
*
51137250 TGCTCCGCTGTAATATTAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGG
131 TGCTCCGCTGTAATATCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGG
51137315 AGATAAGATCTGAAAT
196 AGATAAGATCTGAAAT
51137331 ATTCACTGAT
Statistics
Matches: 406, Mismatches: 23, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
218 406 1.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (218 bp):
TCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGA
GATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTTGATC
TGCTCCGCTGTAATATCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGG
AGATAAGATCTGAAATTCTTCGG
Found at i:51136915 original size:436 final size:432
Alignment explanation
Indices: 51135595--51137325 Score: 1670
Period size: 436 Copynumber: 4.0 Consensus size: 432
51135585 CCTTTATTTT
* * * * * * * * *
51135595 AATCCGCTCCACTATAACTTCAGGGAGATAGGAT-TGATTTCTTTC-GTCTGCTCTACTGCAACT
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAATT-TTTCGGTCTACTCCACTGTAACC
* * * * * **
51135658 TCAGGGAGATAAGA-CTGTATGTGATCTACTCTACTGCAACTTCAAAAAGATAAGATCCTTTATT
65 TCAGGGAGATAAAACCTG-ATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATTATTTATT
**
51135722 TTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCCACTCCGCTGTAATCT
129 TTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCT
* * * *
51135787 TAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT
194 CAAGGAGATAAGATCTCTGGCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGACCTG-AA-
* * * * **
51135852 TCTTCGGTCTACTCTACTGTAACCTCAGGGAGATAAGACCTGATGTGAT-CACTCTGCTGTAACT
257 T-TGCGATCTACTCTACTGTAACCTCAGAGAGATAAGACCTGATGTGATCCGCTCCACTGTAACT
* * * * * * *
51135916 TCAGAGAGATAAGATCCTTTATTTTAAT-TCGCTCCACTGTAACTTCAGGGCGATAGGATAGTGT
321 TCAGAGAGATAAGATACTGTACTTTAATCT-GCTCCACTGTAACTTCAGGGAGATAAGATACTGG
** * * *
51135980 CTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTC
385 CTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTATGGCTTC
*
51136028 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTG-AATTTTTCGGTCTACTCCACTGTAACC
* * *
51136093 TCAAGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATTATTTATTT
65 TCAGGGAGATAAAACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATTATTTATTT
51136158 TAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTC
130 TAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTC
* * *
51136223 AAGGAGATAAGATCTCTGACTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATT
195 AAGGAGATAAGATCTCTGGCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGACCTG-AA--
* * * * * * ** **
51136288 TTTCGGTCTGCTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTT
257 TTGCGATCTACTCTACTGTAACCTCAGAGAGATAAGACCTGATGTGATCCGCTCCACTGTAACTT
* * * * * * * * *
51136353 CAGAGAGATAAGATCCTTTATTTTAATCCGCTTCACTGCAACTTCAGGGAGATAGGATAGTGTCT
322 CAGAGAGATAAGATACTGTACTTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGGCT
* * * * *
51136418 TCGATCTCCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTC
387 TCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTATGGCTTC
* *
51136464 AATCTGCTTCACTGTAACCTCAGAGAGATAAGATCTGAAATTTTTCGGTCTACTCCACTGTAACC
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTG-AATTTTTCGGTCTACTCCACTGTAACC
* *
51136529 TCAGGGACATAAAACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATTATTTATTT
65 TCAGGGAGATAAAACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATTATTTATTT
51136594 TAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTC
130 TAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTC
51136659 AAGGAGATAAGATCTCTGGCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGACCTG-A-TG
195 AAGGAGATAAGATCTCTGGCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGAATTG
* * * * * * * *
51136722 CGATCTACTCTGCTATAACTTCAGAGAGATAAGATCATTTATTTTAATCCGCTCCATTGTAACTT
260 CGATCTACTCTACTGTAACCTCAGAGAGATAAGA-C-CTGA-TGTGATCCGCTCCACTGTAACTT
* * * * * * *
51136787 CAGGGAGATAGGATAGTGT-CTTTGATCTACTCCGCTGTAA-TCTCAGGGAGATAAGATCTCTGG
322 CAGAGAGATAAGATACTGTACTTTAATCTGCTCCACTGTAACT-TCAGGGAGATAAGAT-ACTGG
* **
51136850 CTTCAATCTGCTCCACTGTAACCTCAGGGAGATAATATCTGAAAT-TTTTC
385 CTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT---ATGGCTTC
** * * * * * * ** *
51136900 GGTTTACTCCACTGTAACTTCAGGGAGATAAGACCTG-A---TGCGATCTACTCTGCTGTAACTT
1 AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAATTTTTCGGTCTACTCCACTGTAACCT
* * * *** * * * * *
51136961 CAGAGAGATAAGATCCTTTATTTTAATCCACTCCACTGTAACTTCAGGGAGATAGGA-TAGTGT-
66 CAGGGAGATAA-AACC-TGA-TGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATTA-TTTA
* * * * * * ** * * *
51137024 CTTTGATCTGCTCCGCTGTAA-TATCAGGAAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTA
127 TTTTAATCCGCTCCACTGTAACT-TCAGGGAGATAGGAT-AGTGTCTTCGATCTGCTCCGCTGTA
* * * * ** * * * *
51137088 ACCTCAGGGAGATAAGATCTGAAAT-TCTTCGGTCTACTCCATTGTAACGTTAGGAAGATAAGAC
190 ATCTCAAGGAGATAAGATCT---CTGGCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGAC
* * * * *
51137152 CTG-A-TGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTTATCCGCTCCAC
252 CTGAATTGCGATCTACTCTACTGTAACCTCAGAGAGATAAGA-CC-TGA-TGTGATCCGCTCCAC
* * * * * * *
51137215 TGTAACTTCAGGGAGAGAGGATAGTGT-CTTTGATCTGCTCCGCTGTAA-TATTAGGGAGATAAG
314 TGTAACTTCAGAGAGATAAGATACTGTACTTTAATCTGCTCCACTGTAACT-TCAGGGAGATAAG
*
51137278 ATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT
378 AT-ACTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT
51137326 GAAATATTCA
Statistics
Matches: 1131, Mismatches: 142, Indels: 47
0.86 0.11 0.04
Matches are distributed among these distances:
431 55 0.05
432 6 0.01
433 94 0.08
434 141 0.12
435 237 0.21
436 596 0.53
437 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (432 bp):
AATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAATTTTTCGGTCTACTCCACTGTAACCT
CAGGGAGATAAAACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATTATTTATTTT
AATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCA
AGGAGATAAGATCTCTGGCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGACCTGAATTGC
GATCTACTCTACTGTAACCTCAGAGAGATAAGACCTGATGTGATCCGCTCCACTGTAACTTCAGA
GAGATAAGATACTGTACTTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGATACTGGCTTCAA
TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTATGGCTTC
Found at i:51138622 original size:25 final size:26
Alignment explanation
Indices: 51138585--51138647 Score: 87
Period size: 25 Copynumber: 2.5 Consensus size: 26
51138575 TTTTTTTCTT
51138585 TTTTTCTTATTTTTGAC-TTTGA-TTGA
1 TTTTTCTT-TTTTT-ACTTTTGACTTGA
51138611 TTTTTC-TTTTTTACTTTTGACTTGA
1 TTTTTCTTTTTTTACTTTTGACTTGA
51138636 TTTTTCTTTTTT
1 TTTTTCTTTTTT
51138648 CTTTTCCTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
23 2 0.06
24 10 0.29
25 11 0.32
26 11 0.32
ACGTcount: A:0.11, C:0.10, G:0.08, T:0.71
Consensus pattern (26 bp):
TTTTTCTTTTTTTACTTTTGACTTGA
Found at i:51138629 original size:24 final size:25
Alignment explanation
Indices: 51138594--51138652 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
51138584 TTTTTTCTTA
*
51138594 TTTTTGAC-TTTGA-TTGATTTTTC
1 TTTTTTACTTTTGACTTGATTTTTC
51138617 TTTTTTACTTTTGACTTGATTTTTC
1 TTTTTTACTTTTGACTTGATTTTTC
51138642 TTTTTT-CTTTT
1 TTTTTTACTTTT
51138653 CCTCTTTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
23 7 0.21
24 10 0.30
25 16 0.48
ACGTcount: A:0.10, C:0.10, G:0.08, T:0.71
Consensus pattern (25 bp):
TTTTTTACTTTTGACTTGATTTTTC
Found at i:51143051 original size:111 final size:110
Alignment explanation
Indices: 51142718--51143114 Score: 548
Period size: 111 Copynumber: 3.6 Consensus size: 110
51142708 ATCAATCGAG
* * * * **
51142718 AAATCGAAACCCAGAACCTTAGGGTACG-TTTCTCGAATTTCCAAACGCAAAATATTATCTTACT
1 AAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTA-T
** *
51142782 TCGAAAATTTTTTAAAAGGATATTTAGCCATTTGGTTGAACGAGAA
65 TTTAAAATTTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
*
51142828 AAATCGACACCCAGCACCTTAGGGCACGATCTT-TCGAATTTCCCAAACGCAAAACATTGCCTTA
1 AAATCGACACCCAGCACCTTAGGGCACG-TTTTCTCGAATTT-CCAAACGCAAAACATTGCCTTA
51142892 TTTTAAAA-TTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
64 TTTTAAAATTTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
* *
51142938 AAATTGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
1 AAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
*
51143003 TTAAAATTTTTTTTAAAGGATATTAAGCCATTTGGTTGAACGAGAA
66 TTAAAA-TTTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
* * * * * * * *
51143049 AAACCGACATCCAACACCTTAGGGCATGTTTTCTCGAATTTCCAAATGCTAAATATTGCCTCATT
1 AAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
51143114 T
66 T
51143115 AGAAAAATTT
Statistics
Matches: 259, Mismatches: 22, Indels: 11
0.89 0.08 0.04
Matches are distributed among these distances:
109 33 0.13
110 96 0.37
111 109 0.42
112 21 0.08
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (110 bp):
AAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCAAACGCAAAACATTGCCTTATT
TTAAAATTTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
Found at i:51143485 original size:23 final size:23
Alignment explanation
Indices: 51143455--51143515 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 23
51143445 ATAAATATGC
51143455 ATATATATATATAAAAAAAGTAT
1 ATATATATATATAAAAAAAGTAT
* * *
51143478 TTATATATATATTAAATAAATTAT
1 ATATATATATA-TAAAAAAAGTAT
*
51143502 ATGTA-ATATATAAA
1 ATATATATATATAAA
51143516 CACCTATATA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
22 4 0.12
23 15 0.47
24 13 0.41
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (23 bp):
ATATATATATATAAAAAAAGTAT
Found at i:51143664 original size:12 final size:12
Alignment explanation
Indices: 51143647--51143671 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51143637 GGTGTTCATT
51143647 CGGTTAACCGAC
1 CGGTTAACCGAC
51143659 CGGTTAACCGAC
1 CGGTTAACCGAC
51143671 C
1 C
51143672 CAAAATTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:51143841 original size:9 final size:9
Alignment explanation
Indices: 51143829--51143896 Score: 75
Period size: 9 Copynumber: 7.4 Consensus size: 9
51143819 TTTGTTTAAA
51143829 AATTACCCG
1 AATTACCCG
51143838 AATTACCCG
1 AATTACCCG
51143847 AATTACCCG
1 AATTACCCG
* *
51143856 AATTAACCA
1 AATTACCCG
*
51143865 AATTA-CTG
1 AATTACCCG
*
51143873 AAAAATACCCG
1 --AATTACCCG
51143884 AATTACCCG
1 AATTACCCG
51143893 AATT
1 AATT
51143897 TTTTTATTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
8 1 0.02
9 42 0.86
10 4 0.08
11 2 0.04
ACGTcount: A:0.41, C:0.26, G:0.09, T:0.24
Consensus pattern (9 bp):
AATTACCCG
Found at i:51144019 original size:31 final size:31
Alignment explanation
Indices: 51143982--51144041 Score: 104
Period size: 31 Copynumber: 1.9 Consensus size: 31
51143972 TGAGTTGTCT
51143982 TTTAGTTTTAGTTTTATTG-GATTGGGTAAAC
1 TTTAGTTTTAGTTTTATTGAG-TTGGGTAAAC
51144013 TTTAGTTTTAGTTTTATTGAGTTGGGTAA
1 TTTAGTTTTAGTTTTATTGAGTTGGGTAA
51144042 TTGGGTTGGG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
31 27 0.96
32 1 0.04
ACGTcount: A:0.22, C:0.02, G:0.23, T:0.53
Consensus pattern (31 bp):
TTTAGTTTTAGTTTTATTGAGTTGGGTAAAC
Found at i:51144049 original size:13 final size:13
Alignment explanation
Indices: 51144028--51144066 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
51144018 TTTTAGTTTT
51144028 ATTGAGTTGGGTA
1 ATTGAGTTGGGTA
*
51144041 ATTGGGTTGGGTA
1 ATTGAGTTGGGTA
51144054 ATTGAGTTTGGGT
1 ATTGAG-TTGGGT
51144067 TAGGTTGGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 17 0.74
14 6 0.26
ACGTcount: A:0.18, C:0.00, G:0.41, T:0.41
Consensus pattern (13 bp):
ATTGAGTTGGGTA
Found at i:51144301 original size:3 final size:3
Alignment explanation
Indices: 51144293--51144338 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
51144283 TTGGATCACG
51144293 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA A
1 ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA ACA A
51144339 TAATAATAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.33, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:51144343 original size:3 final size:3
Alignment explanation
Indices: 51144337--51144383 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
51144327 CAACAACAAC
51144337 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
51144384 ACATAATGAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:51145805 original size:19 final size:19
Alignment explanation
Indices: 51145766--51145805 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
51145756 ATTTTACACT
*
51145766 ATTATGTAAATCATAAGAA
1 ATTATGTAAAACATAAGAA
51145785 ATTATGTAACAACATAA-AA
1 ATTATGTAA-AACATAAGAA
51145804 AT
1 AT
51145806 CGTAGGAGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.30
Consensus pattern (19 bp):
ATTATGTAAAACATAAGAA
Found at i:51152763 original size:15 final size:15
Alignment explanation
Indices: 51152743--51152777 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
51152733 TCTTTCCTTG
* *
51152743 TTTTTTTTCTTTTTC
1 TTTTTTTTATTTTCC
51152758 TTTTTTTTATTTTCC
1 TTTTTTTTATTTTCC
51152773 TTTTT
1 TTTTT
51152778 CTCTCGGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.86
Consensus pattern (15 bp):
TTTTTTTTATTTTCC
Found at i:51156156 original size:106 final size:105
Alignment explanation
Indices: 51155963--51156391 Score: 693
Period size: 106 Copynumber: 4.1 Consensus size: 105
51155953 TCAAAAAGAT
* * *
51155963 TTTCTAAA-TAAGGTAATATTTCGCGTTTGAAAATTCGAGAAAACGTGCCCTAACGTGTTGGGTT
1 TTTC-AAAGTAAGGCAATATTTTGCGTTTGAAAA-TCGAGAAAACGTGCCCTAACGTGCTGGGTT
51156027 TCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAA
64 TCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAA
* *
51156069 TTTCAAAGTAAGGCAATATTTTGCATTTAGAAAATCGAGAAAACGTGCCTTAACGTGCTGGGTTT
1 TTTCAAAGTAAGGCAATATTTTGCGTTT-GAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTT
51156134 CGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAA
65 CGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAA
* *
51156175 TTTCAAAGTAAGACAATATTTTGCGTTTGAAAAATCGAGAAAACATGCCCTAACGTGCTGGGTTT
1 TTTCAAAGTAAGGCAATATTTTGCGTTTG-AAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTT
*
51156240 CGATTTCTCGTTCGACCAAATAGCCAAATATCTTTTTAAAA
65 CGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAA
*
51156281 TTTCAAAGCT-AGGCAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTT
1 TTTCAAAG-TAAGGCAATATTTTGCGTTT-GAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTT
*
51156345 TCGATTTCTCGTTCGACCAAATAGCCAAATATCCTCTT-AAA
64 TCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAA
51156386 TTTCAA
1 TTTCAA
51156392 TCCATGTCAT
Statistics
Matches: 303, Mismatches: 15, Indels: 11
0.92 0.05 0.03
Matches are distributed among these distances:
105 13 0.04
106 283 0.93
107 7 0.02
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.33
Consensus pattern (105 bp):
TTTCAAAGTAAGGCAATATTTTGCGTTTGAAAATCGAGAAAACGTGCCCTAACGTGCTGGGTTTC
GATTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAA
Found at i:51158538 original size:2 final size:2
Alignment explanation
Indices: 51158531--51158568 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
51158521 AAATCACGCA
51158531 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
51158569 CAGTTTTTGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:51168645 original size:28 final size:30
Alignment explanation
Indices: 51168587--51168645 Score: 95
Period size: 28 Copynumber: 2.0 Consensus size: 30
51168577 AGGGATTAAA
51168587 AGGGTTGCTAGTTTAGCCTTATAAAAGCTAG
1 AGGGTTGCTAGTTTAGCC-TATAAAAGCTAG
51168618 AGGGTT-CTAGTTTAGCC-ATAAAAGCTAG
1 AGGGTTGCTAGTTTAGCCTATAAAAGCTAG
51168646 GAGAAGGGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 11 0.39
30 11 0.39
31 6 0.21
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.31
Consensus pattern (30 bp):
AGGGTTGCTAGTTTAGCCTATAAAAGCTAG
Found at i:51177276 original size:17 final size:16
Alignment explanation
Indices: 51177242--51177280 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
51177232 TTTTGATAGA
* *
51177242 TTATTTTTTGAATGTT
1 TTATTTTTTAAATATT
51177258 TTATATTTTTAAATATT
1 TTAT-TTTTTAAATATT
51177275 TTATTT
1 TTATTT
51177281 ATAAATTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (16 bp):
TTATTTTTTAAATATT
Found at i:51184744 original size:11 final size:11
Alignment explanation
Indices: 51184730--51184827 Score: 56
Period size: 11 Copynumber: 8.3 Consensus size: 11
51184720 GAGAAATTTA
51184730 AGAGGAAATTG
1 AGAGGAAATTG
*
51184741 AGAGCAAATTG
1 AGAGGAAATTG
*
51184752 AGAGCAAATTG
1 AGAGGAAATTG
*
51184763 AGATTAGATATGGATTTG
1 AGA--GGA-A---A-TTG
51184781 AGA-GAAATTTG
1 AGAGGAAA-TTG
*
51184792 -GAAGGAATTTG
1 AG-AGGAAATTG
*
51184803 AGAGCAAATTG
1 AGAGGAAATTG
51184814 AGAGGAAATTG
1 AGAGGAAATTG
51184825 AGA
1 AGA
51184828 AAATAATTGA
Statistics
Matches: 70, Mismatches: 7, Indels: 20
0.72 0.07 0.21
Matches are distributed among these distances:
10 1 0.01
11 53 0.76
12 4 0.06
13 1 0.01
14 2 0.03
15 2 0.03
17 1 0.01
18 6 0.09
ACGTcount: A:0.43, C:0.03, G:0.31, T:0.23
Consensus pattern (11 bp):
AGAGGAAATTG
Found at i:51184755 original size:22 final size:22
Alignment explanation
Indices: 51184730--51184827 Score: 73
Period size: 22 Copynumber: 4.6 Consensus size: 22
51184720 GAGAAATTTA
51184730 AGAGGAAATTGAGAGCAAATTG
1 AGAGGAAATTGAGAGCAAATTG
* ** *
51184752 AGAGCAAATTGAGATTAGA-T-
1 AGAGGAAATTGAGAGCAAATTG
* *
51184772 A-TGG-ATTTGAGAG-AAATTTG
1 AGAGGAAATTGAGAGCAAA-TTG
*
51184792 -GAAGGAATTTGAGAGCAAATTG
1 AG-AGGAAATTGAGAGCAAATTG
51184814 AGAGGAAATTGAGA
1 AGAGGAAATTGAGA
51184828 AAATAATTGA
Statistics
Matches: 57, Mismatches: 11, Indels: 16
0.68 0.13 0.19
Matches are distributed among these distances:
17 2 0.04
18 7 0.12
19 2 0.04
20 1 0.02
21 3 0.05
22 38 0.67
23 4 0.07
ACGTcount: A:0.43, C:0.03, G:0.31, T:0.23
Consensus pattern (22 bp):
AGAGGAAATTGAGAGCAAATTG
Found at i:51185061 original size:21 final size:22
Alignment explanation
Indices: 51185037--51185095 Score: 54
Period size: 19 Copynumber: 2.9 Consensus size: 22
51185027 GATCGTGCTT
51185037 ACGTGGATGCGATTTGTTGCC-
1 ACGTGGATGCGATTTGTTGCCG
* * * *
51185058 ACGT-CA-GCAAATCG-TGCCG
1 ACGTGGATGCGATTTGTTGCCG
51185077 ACGTGGATGCGATTTGTTG
1 ACGTGGATGCGATTTGTTG
51185096 ACGCGTCCCC
Statistics
Matches: 26, Mismatches: 8, Indels: 7
0.63 0.20 0.17
Matches are distributed among these distances:
18 4 0.15
19 9 0.35
20 2 0.08
21 9 0.35
22 2 0.08
ACGTcount: A:0.19, C:0.20, G:0.32, T:0.29
Consensus pattern (22 bp):
ACGTGGATGCGATTTGTTGCCG
Found at i:51185766 original size:29 final size:28
Alignment explanation
Indices: 51185721--51185807 Score: 77
Period size: 33 Copynumber: 2.9 Consensus size: 28
51185711 TTTAAATTTG
* *
51185721 AAAAGTAAATGGGCTAAATTCTTGAAAAC
1 AAAAGTACA-GGGCTAAATTCTTAAAAAC
*
51185750 AAAAGTACAGGGACTAACTAAATTCTTAAAAAT
1 AAAAGTACAGGG-----CTAAATTCTTAAAAAC
51185783 AAAAGTACAAGGGCTAAATT-TTAAA
1 AAAAGTAC-AGGGCTAAATTCTTAAA
51185808 TTTGTGAAGA
Statistics
Matches: 49, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
28 8 0.16
29 15 0.31
33 22 0.45
34 4 0.08
ACGTcount: A:0.51, C:0.10, G:0.15, T:0.24
Consensus pattern (28 bp):
AAAAGTACAGGGCTAAATTCTTAAAAAC
Found at i:51185776 original size:33 final size:33
Alignment explanation
Indices: 51185734--51185799 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
51185724 AGTAAATGGG
*
51185734 CTAAATTCTTGAAAACAAAAGTAC-AGGGACTAA
1 CTAAATTCTTAAAAACAAAAGTACAAGGG-CTAA
*
51185767 CTAAATTCTTAAAAATAAAAGTACAAGGGCTAA
1 CTAAATTCTTAAAAACAAAAGTACAAGGGCTAA
51185800 ATTTTAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 26 0.87
34 4 0.13
ACGTcount: A:0.50, C:0.14, G:0.14, T:0.23
Consensus pattern (33 bp):
CTAAATTCTTAAAAACAAAAGTACAAGGGCTAA
Found at i:51185900 original size:21 final size:21
Alignment explanation
Indices: 51185851--51185909 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
51185841 TAACATTTAT
* *
51185851 TATTAATATATCTATAATTGAAA
1 TATTAATAT-T-TATTATTAAAA
51185874 TA--AATATTTATTATTAAAA
1 TATTAATATTTATTATTAAAA
*
51185893 TATTAATATTAATTATT
1 TATTAATATTTATTATT
51185910 TTCATTTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
19 11 0.35
20 1 0.03
21 17 0.55
23 2 0.06
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
TATTAATATTTATTATTAAAA
Found at i:51188375 original size:33 final size:33
Alignment explanation
Indices: 51188336--51188399 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
51188326 TAAATGGGAC
* *
51188336 AAATTCTTGAAAACAAAAGTACAGGGACTAACT
1 AAATTCTTAAAAACAAAAGTACAAGGACTAACT
*
51188369 AAATTCTTAAAAATAAAAGTACAAGGACTAA
1 AAATTCTTAAAAACAAAAGTACAAGGACTAA
51188400 ATGTTAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.22
Consensus pattern (33 bp):
AAATTCTTAAAAACAAAAGTACAAGGACTAACT
Found at i:51188500 original size:21 final size:21
Alignment explanation
Indices: 51188451--51188509 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
51188441 TAACATTTAT
* *
51188451 TATTAATATATCTATAATTGAAA
1 TATTAATAT-T-TATTATTAAAA
51188474 TA--AATATTTATTATTAAAA
1 TATTAATATTTATTATTAAAA
*
51188493 TATTAATATTAATTATT
1 TATTAATATTTATTATT
51188510 TTCAATTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
19 11 0.35
20 1 0.03
21 17 0.55
23 2 0.06
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
TATTAATATTTATTATTAAAA
Found at i:51188548 original size:16 final size:17
Alignment explanation
Indices: 51188529--51188565 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
51188519 ATGTGAAGAA
*
51188529 TATTATTTAAAA-TTAT
1 TATTATTGAAAATTTAT
51188545 TATT-TTGAAAATTTAT
1 TATTATTGAAAATTTAT
51188561 TATTA
1 TATTA
51188566 AAATAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (17 bp):
TATTATTGAAAATTTAT
Found at i:51188694 original size:31 final size:31
Alignment explanation
Indices: 51188663--51188718 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
51188653 GTATGTTTAA
51188663 TAATAT-TTAA-AATTAT-AATATTTTATAT
1 TAATATATTAATAATTATAAATATTTTATAT
*
51188691 TAATATATTAATAATTTTAAATATTTTA
1 TAATATATTAATAATTATAAATATTTTA
51188719 AAAATAAGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 6 0.25
29 4 0.17
30 5 0.21
31 9 0.38
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (31 bp):
TAATATATTAATAATTATAAATATTTTATAT
Found at i:51188962 original size:14 final size:14
Alignment explanation
Indices: 51188943--51188969 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
51188933 CAGGAAAATG
51188943 CATAAAACATTTTT
1 CATAAAACATTTTT
51188957 CATAAAACATTTT
1 CATAAAACATTTT
51188970 ACAGTGAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (14 bp):
CATAAAACATTTTT
Found at i:51189938 original size:18 final size:17
Alignment explanation
Indices: 51189897--51189941 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 17
51189887 CAAGAACATA
51189897 AAAACAT-ATT-ATTAT
1 AAAACATAATTAATTAT
51189912 AAAA-A-AATTAATTAT
1 AAAACATAATTAATTAT
51189927 AAAAGCATAATTAAT
1 AAAA-CATAATTAAT
51189942 AGAAGAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
14 4 0.16
15 13 0.52
17 1 0.04
18 7 0.28
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAACATAATTAATTAT
Found at i:51195974 original size:21 final size:21
Alignment explanation
Indices: 51195950--51195993 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
51195940 TCGATTAATT
*
51195950 TTATTTAATTTATATACTATA
1 TTATTTAATTTACATACTATA
* *
51195971 TTATTTTATTTACCTACTATA
1 TTATTTAATTTACATACTATA
51195992 TT
1 TT
51195994 TCATGAAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (21 bp):
TTATTTAATTTACATACTATA
Found at i:51196217 original size:5 final size:5
Alignment explanation
Indices: 51196207--51196233 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
51196197 ATACTTTAAT
51196207 TTTTC TTTTC TTTTC TTTTC TTTTC TT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TT
51196234 GAAAGGGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTC
Found at i:51203853 original size:23 final size:23
Alignment explanation
Indices: 51203827--51203871 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
51203817 TTATTGCATC
*
51203827 TTAAA-TAAAATCTAATTGAATAA
1 TTAAATTAAAATATAATT-AATAA
51203850 TTAAATTAAAATATAATTAATA
1 TTAAATTAAAATATAATTAATA
51203872 GTACCAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (23 bp):
TTAAATTAAAATATAATTAATAA
Found at i:51204787 original size:2 final size:2
Alignment explanation
Indices: 51204774--51204805 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
51204764 ATAGTGTTGA
*
51204774 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51204806 GCAATAAACC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:51214194 original size:18 final size:17
Alignment explanation
Indices: 51214154--51214197 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 17
51214144 TCCTCAGTGA
51214154 AATGTAAC-AATGAGAG
1 AATGTAACAAATGAGAG
* *
51214170 AAAGTAACAAATTGCGAG
1 AATGTAACAAA-TGAGAG
51214188 AATGTAACAA
1 AATGTAACAA
51214198 TGCCTTTGAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 7 0.30
17 2 0.09
18 14 0.61
ACGTcount: A:0.52, C:0.09, G:0.20, T:0.18
Consensus pattern (17 bp):
AATGTAACAAATGAGAG
Found at i:51215618 original size:29 final size:30
Alignment explanation
Indices: 51215580--51215644 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 30
51215570 TCGACTCGAA
51215580 TATATTATGTTATAA-AATTATTATAT-TAAT
1 TATA-TATGTTA-AATAATTATTATATATAAT
*
51215610 TATATATGTTAAATAATTATTATATATATT
1 TATATATGTTAAATAATTATTATATATAAT
51215640 TATAT
1 TATAT
51215645 TTATATTAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
28 2 0.06
29 18 0.56
30 12 0.38
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (30 bp):
TATATATGTTAAATAATTATTATATATAAT
Found at i:51215654 original size:32 final size:29
Alignment explanation
Indices: 51215595--51215660 Score: 78
Period size: 32 Copynumber: 2.2 Consensus size: 29
51215585 TATGTTATAA
*
51215595 AATTATTATATTAATTATATATGTTAAAT
1 AATTATTATATTAATTATATATATTAAAT
*
51215624 AATTATTATATATATTTATATTTATATTAAAT
1 AATTATTATAT-TAATTATA--TATATTAAAT
*
51215656 CATTA
1 AATTA
51215661 ATCCAATAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 11 0.35
30 7 0.23
32 13 0.42
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (29 bp):
AATTATTATATTAATTATATATATTAAAT
Found at i:51215817 original size:39 final size:38
Alignment explanation
Indices: 51215738--51215831 Score: 93
Period size: 38 Copynumber: 2.5 Consensus size: 38
51215728 AAAATTATAC
* * *
51215738 TTAATACAATAAAATATTTGTTATATTTATTCCTGTTTT
1 TTAATATAAT-AAATATTTATTATATTTATACCTGTTTT
* **
51215777 TTAATATAATAAATATTTATTATGTTTATAGTTGTGTTT
1 TTAATATAATAAATATTTATTATATTTATACCTGT-TTT
*
51215816 TTCAT-T-ATAAATATTT
1 TTAATATAATAAATATTT
51215832 TTCAAAGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 10 0.21
38 21 0.45
39 16 0.34
ACGTcount: A:0.34, C:0.04, G:0.06, T:0.55
Consensus pattern (38 bp):
TTAATATAATAAATATTTATTATATTTATACCTGTTTT
Found at i:51215911 original size:2 final size:2
Alignment explanation
Indices: 51215906--51215948 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
51215896 CATTTAGTGT
51215906 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
51215948 T
1 T
51215949 TAAATAAAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:51217705 original size:24 final size:24
Alignment explanation
Indices: 51217678--51217729 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
51217668 TTAGTAAGTC
*
51217678 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
51217702 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
51217726 AAAT
1 AAAT
51217730 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:51220765 original size:16 final size:16
Alignment explanation
Indices: 51220744--51220782 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
51220734 TTTATGAAAA
51220744 TATTTTTTT-ATTT-T
1 TATTTTTTTAATTTCT
51220758 TAATTTTTTTAATTTCT
1 T-ATTTTTTTAATTTCT
51220775 TATTTTTT
1 TATTTTTT
51220783 AAAAATTGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 1 0.05
15 8 0.36
16 11 0.50
17 2 0.09
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (16 bp):
TATTTTTTTAATTTCT
Found at i:51228193 original size:27 final size:28
Alignment explanation
Indices: 51228140--51228194 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 28
51228130 TCAACATTCT
* *
51228140 TTTTTTCTCTTCTGAATCTTTAGATTTCC
1 TTTTTCCTCTTCTGAATCTCTA-ATTTCC
*
51228169 TTTTTCCTTTTCTGAATCTCT-ATTTC
1 TTTTTCCTCTTCTGAATCTCTAATTTC
51228195 ACTGTTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 5 0.22
29 18 0.78
ACGTcount: A:0.13, C:0.22, G:0.05, T:0.60
Consensus pattern (28 bp):
TTTTTCCTCTTCTGAATCTCTAATTTCC
Found at i:51236212 original size:16 final size:16
Alignment explanation
Indices: 51236188--51236220 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
51236178 TTCGCTGTAT
51236188 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
*
51236204 TGGATTAGAGGCGTAA
1 TGGAATAGAGGCGTAA
51236220 T
1 T
51236221 AGTAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.06, G:0.36, T:0.24
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:51236266 original size:45 final size:44
Alignment explanation
Indices: 51236201--51236288 Score: 115
Period size: 45 Copynumber: 2.0 Consensus size: 44
51236191 AATAGAGGCG
* *
51236201 TAATGGATTAGAGGCGTAATAGTAAATCAAT-TGTTTGGTTGAATA
1 TAATGGAATAGAGGCATAATAG-AAATC-ATGTGTTTGGTTGAATA
* *
51236246 TAATGGAATAGAGGCATAATAGCAATCTTGTGTTTGGTTGAAT
1 TAATGGAATAGAGGCATAATAGAAATCATGTGTTTGGTTGAAT
51236289 GGAATAGAGG
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
43 1 0.03
44 17 0.45
45 20 0.53
ACGTcount: A:0.34, C:0.06, G:0.25, T:0.35
Consensus pattern (44 bp):
TAATGGAATAGAGGCATAATAGAAATCATGTGTTTGGTTGAATA
Found at i:51236580 original size:44 final size:43
Alignment explanation
Indices: 51236500--51236582 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
51236490 CTCAAATCAT
* *
51236500 AATATATGATACTATAAAATATAAATTAACATAATTATTGTTA
1 AATATATGATAATATAAAATATAAATTAACAAAATTATTGTTA
* *
51236543 AATATATTATAAT-TAAAATATATAATTTAATAAAATTATT
1 AATATATGATAATATAAAATATA-AA-TTAACAAAATTATT
51236583 AATAATCAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 9 0.26
43 13 0.38
44 12 0.35
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (43 bp):
AATATATGATAATATAAAATATAAATTAACAAAATTATTGTTA
Found at i:51236620 original size:120 final size:120
Alignment explanation
Indices: 51236408--51237002 Score: 973
Period size: 120 Copynumber: 5.0 Consensus size: 120
51236398 NNNNNNNNNN
* *
51236408 AACATAATTATTATTAAATAT-ATTATAAT-AAAATATATAATTTAATAAAATTCTTAATAATCA
1 AACATAATTATTATTAAATATAATT-TAATAAAAATATATAATTTAATAAAATTCTTAATATTAA
* * * *
51236471 ATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
65 ATATTCTTATATGAATTTAATAAAATCATAATATATGATACTATATAATATAATTT
* * * * *
51236527 AACATAATTATTGTTAAATAT-ATTATAATTAAAATATATAATTTAATAAAATTATTAATAATCA
1 AACATAATTATTATTAAATATAATT-TAATAAAAATATATAATTTAATAAAATTCTTAATATTAA
* * *
51236591 ATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAATTT
65 ATATTCTTATATGAATTTAATAAAATCATAATATATGATACTATATAATATAATTT
51236647 AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAA
1 AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAA
*
51236712 TATTCTTATATGAATTTAATAAAATTATAATATA-GAATACTATATAATATAATTT
66 TATTCTTATATGAATTTAATAAAATCATAATATATG-ATACTATATAATATAATTT
51236767 AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAA
1 AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAA
*
51236832 TATTCTTATATGAATTTAATAAAATCATAATATATAATACTATATAATATAATTT
66 TATTCTTATATGAATTTAATAAAATCATAATATATGATACTATATAATATAATTT
*
51236887 AAAATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAA
1 AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAA
*
51236952 TATTCTTATATGAATTTAATAAAATCATAATATATAATACTATATAATATA
66 TATTCTTATATGAATTTAATAAAATCATAATATATGATACTATATAATATA
51237003 GATTAATAAT
Statistics
Matches: 457, Mismatches: 15, Indels: 7
0.95 0.03 0.01
Matches are distributed among these distances:
119 29 0.06
120 425 0.93
121 3 0.01
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAA
TATTCTTATATGAATTTAATAAAATCATAATATATGATACTATATAATATAATTT
Found at i:51236739 original size:19 final size:18
Alignment explanation
Indices: 51236664--51236976 Score: 105
Period size: 18 Copynumber: 15.9 Consensus size: 18
51236654 TTATTATTAA
*
51236664 ATATAATTTAATAAAAAT
1 ATATAATTTAATAAAATT
51236682 ATATAATTTAATAAAATT
1 ATATAATTTAATAAAATT
* ***
51236700 CT-TAATATTAAATATTCTT
1 ATATAAT-TT-AATAAAATT
51236719 ATATGAATTTAATAAAATT
1 ATAT-AATTTAATAAAATT
** * *
51236738 ATA-ATATAGAATACTATATA
1 ATATA-ATTTAATA--AAATT
51236758 ATATAATTTAACATAATTATTATT
1 ATATAATTT-A-ATAA--A--ATT
*
51236782 AAATATAATTTAATAAAAAT
1 --ATATAATTTAATAAAATT
51236802 ATATAATTTAATAAAATT
1 ATATAATTTAATAAAATT
* ***
51236820 CT-TAATATTAAATATTCTT
1 ATATAAT-TT-AATAAAATT
*
51236839 ATATGAATTTAATAAAATC
1 ATAT-AATTTAATAAAATT
* * *
51236858 ATA-ATATATAATACTATATA
1 ATATA-ATTTAATA--AAATT
51236878 ATATAATTTAAAATAATTATTATT
1 ATATAATTT--AATAA--A--ATT
*
51236902 AAATATAATTTAATAAAAAT
1 --ATATAATTTAATAAAATT
51236922 ATATAATTTAATAAAATT
1 ATATAATTTAATAAAATT
* ***
51236940 CT-TAATATTAAATATTCTT
1 ATATAAT-TT-AATAAAATT
51236959 ATATGAATTTAATAAAAT
1 ATAT-AATTTAATAAAAT
51236977 CATAATATAT
Statistics
Matches: 215, Mismatches: 44, Indels: 71
0.65 0.13 0.22
Matches are distributed among these distances:
17 14 0.07
18 73 0.34
19 43 0.20
20 32 0.15
21 12 0.06
22 9 0.04
24 13 0.06
25 1 0.00
26 18 0.08
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.43
Consensus pattern (18 bp):
ATATAATTTAATAAAATT
Found at i:51236849 original size:56 final size:55
Alignment explanation
Indices: 51236784--51236975 Score: 208
Period size: 56 Copynumber: 3.3 Consensus size: 55
51236774 TTATTATTAA
51236784 ATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTT
1 ATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTT
* * * * *
51236839 ATATGAATTTAATAAAATCATAATATATAATACTATATAATATAAT-TTAA-AATAATTATTATT
1 ATAT-AATTTAAT--AA--A-AATATATAAT-TTA-ATAA-A-ATTCTTAATATTAAATATTCTT
51236902 AAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTT
1 --ATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTT
51236959 ATATGAATTTAATAAAA
1 ATAT-AATTTAATAAAA
51236976 TCATAATATA
Statistics
Matches: 112, Mismatches: 10, Indels: 29
0.74 0.07 0.19
Matches are distributed among these distances:
55 10 0.09
56 25 0.22
57 14 0.12
58 4 0.04
59 10 0.09
60 2 0.02
61 10 0.09
62 4 0.04
63 14 0.12
64 13 0.12
65 6 0.05
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (55 bp):
ATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTT
Found at i:51244528 original size:31 final size:31
Alignment explanation
Indices: 51244492--51244555 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
51244482 AACATCTGAA
51244492 ATCCCTTCTGGATTTCTCCTATTCTGAAGCT
1 ATCCCTTCTGGATTTCTCCTATTCTGAAGCT
51244523 ATCCCTTCTGGATTTCTCCTATTCTGAAGCT
1 ATCCCTTCTGGATTTCTCCTATTCTGAAGCT
51244554 AT
1 AT
51244556 GGCCGCTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.17, C:0.28, G:0.12, T:0.42
Consensus pattern (31 bp):
ATCCCTTCTGGATTTCTCCTATTCTGAAGCT
Found at i:51264796 original size:30 final size:30
Alignment explanation
Indices: 51264760--51264905 Score: 265
Period size: 30 Copynumber: 4.9 Consensus size: 30
51264750 TAGTCCCAAG
51264760 AGGCGAAGGCGGTCCACTTGGTGGCCGAAA
1 AGGCGAAGGCGGTCCACTTGGTGGCCGAAA
*
51264790 AGGCGAAGGCGGTCCACTTGGTGGCCCAAA
1 AGGCGAAGGCGGTCCACTTGGTGGCCGAAA
*
51264820 AGGCGAAGGCGGTCCACTTGGTGACCGAAA
1 AGGCGAAGGCGGTCCACTTGGTGGCCGAAA
*
51264850 AGGCGAAGGCGGTCCACTTGGTGACCGAAA
1 AGGCGAAGGCGGTCCACTTGGTGGCCGAAA
51264880 AGGCGAAGGCGGTCCACTTGGTGGCC
1 AGGCGAAGGCGGTCCACTTGGTGGCC
51264906 CAAATGGCCT
Statistics
Matches: 112, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 112 1.00
ACGTcount: A:0.23, C:0.25, G:0.38, T:0.14
Consensus pattern (30 bp):
AGGCGAAGGCGGTCCACTTGGTGGCCGAAA
Found at i:51266277 original size:15 final size:15
Alignment explanation
Indices: 51266259--51266293 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
51266249 CAAAACAAAT
51266259 ATTTTCACAACATCC
1 ATTTTCACAACATCC
* *
51266274 ATTTTCACAATATTC
1 ATTTTCACAACATCC
51266289 ATTTT
1 ATTTT
51266294 TCTTTAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (15 bp):
ATTTTCACAACATCC
Found at i:51271266 original size:26 final size:25
Alignment explanation
Indices: 51271198--51271292 Score: 70
Period size: 26 Copynumber: 3.8 Consensus size: 25
51271188 TAAGATATGC
** **
51271198 AAAAATATGTATGTACGTGCAT-AT
1 AAAAATATGTATGTATATAAATAAT
* *
51271222 AAAAATATATATACT-TATAAA-AAT
1 AAAAATATGTAT-GTATATAAATAAT
51271246 AAAAGGATATGTATGTATATAAATTAAT
1 AAAA--ATATGTATGTATATAAA-TAAT
*
51271274 AATAATATGTATGTATATA
1 AAAAATATGTATGTATATA
51271293 CGGATTTATA
Statistics
Matches: 55, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
24 19 0.35
25 2 0.04
26 28 0.51
28 6 0.11
ACGTcount: A:0.51, C:0.03, G:0.11, T:0.36
Consensus pattern (25 bp):
AAAAATATGTATGTATATAAATAAT
Found at i:51271554 original size:2 final size:2
Alignment explanation
Indices: 51271534--51271580 Score: 71
Period size: 2 Copynumber: 24.0 Consensus size: 2
51271524 ATAGGTAATA
51271534 AT AT A- AT ACT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51271575 AT AT AT
1 AT AT AT
51271581 GTTATAAAAC
Statistics
Matches: 42, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.05
2 38 0.90
3 2 0.05
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:51271652 original size:140 final size:143
Alignment explanation
Indices: 51271406--51271682 Score: 508
Period size: 140 Copynumber: 2.0 Consensus size: 143
51271396 TAAGTTGTAA
51271406 AATATATAAACTATATAAGTATATATATATATATGTTATAAAACAATGTATGTATATCACAAAAA
1 AATATATAAACTATATAAGTATATATATATATATGTTATAAAACAATGTATGTATATCACAAAAA
51271471 TATATGCATGTATATATATGTACCGAAAATTTAAATAAAATAAATACAAACAAATAGGTAATAAT
66 TATATGCATGTATATATATGTACCGAAAATTTAAATAAAATAAATACAAACAAATAGGTAATAAT
51271536 -ATAATACTATAT
131 AATAATACTATAT
*
51271548 AATATATATA-TATATATA-TATATATATATATATGTTATAAAACAATGTATGTATATCAC-AAA
1 AATATATAAACTATATA-AGTATATATATATATATGTTATAAAACAATGTATGTATATCACAAAA
51271610 ATATATGCATGTATATATATGTACCGAAAATTTAAATAAAATAAATACAAACAAATAGGTAATAA
65 ATATATGCATGTATATATATGTACCGAAAATTTAAATAAAATAAATACAAACAAATAGGTAATAA
51271675 TAATAATA
130 TAATAATA
51271683 ACAATAATAA
Statistics
Matches: 132, Mismatches: 1, Indels: 5
0.96 0.01 0.04
Matches are distributed among these distances:
140 69 0.52
141 53 0.40
142 10 0.08
ACGTcount: A:0.52, C:0.06, G:0.07, T:0.34
Consensus pattern (143 bp):
AATATATAAACTATATAAGTATATATATATATATGTTATAAAACAATGTATGTATATCACAAAAA
TATATGCATGTATATATATGTACCGAAAATTTAAATAAAATAAATACAAACAAATAGGTAATAAT
AATAATACTATAT
Found at i:51271677 original size:3 final size:3
Alignment explanation
Indices: 51271669--51271736 Score: 127
Period size: 3 Copynumber: 22.7 Consensus size: 3
51271659 AACAAATAGG
*
51271669 TAA TAA TAA TAA TAA CAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
51271717 TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TA
51271737 GGACTAAATC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:51272455 original size:14 final size:13
Alignment explanation
Indices: 51272427--51272464 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
51272417 TGCAAAGAAA
51272427 AAATAAAACAAAAT
1 AAATAAAA-AAAAT
51272441 AAGATAAAAAAAAT
1 AA-ATAAAAAAAAT
51272455 AAATAAAAAA
1 AAATAAAAAA
51272465 CAAGAAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 8 0.35
14 9 0.39
15 6 0.26
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.13
Consensus pattern (13 bp):
AAATAAAAAAAAT
Found at i:51273060 original size:28 final size:28
Alignment explanation
Indices: 51273029--51273083 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
51273019 TTCCAGTCTA
51273029 CTGTGTCTTGTTGCTTCGATCCACTCCT
1 CTGTGTCTTGTTGCTTCGATCCACTCCT
51273057 CTGTGTCTTGTTGCTTCGATCCACTCC
1 CTGTGTCTTGTTGCTTCGATCCACTCC
51273084 ACTGCACTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.07, C:0.33, G:0.18, T:0.42
Consensus pattern (28 bp):
CTGTGTCTTGTTGCTTCGATCCACTCCT
Found at i:51273310 original size:44 final size:43
Alignment explanation
Indices: 51273165--51273910 Score: 404
Period size: 44 Copynumber: 17.3 Consensus size: 43
51273155 GTTTTTTCTG
* * *
51273165 TCTGCTCCGCTACTGCTTAGGGAGATAAGACTTG--A--TGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-TCGCCATCTTCGA
* *** **
51273205 TCTGCTCCACTACTGCTTAGGGAGATAGGACTCG-TGGCTTAAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-TCGCCATCTTCGA
* * *
51273248 TCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-TCGCCATCTTCGA
* *** *
51273292 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTAATATCTTTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATC-GCCATCTTCGA
* * * **** **
51273336 CCTGCTCCACTACTGCTTAAGGAGATAGGA-CTGGTGGCTTAAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATC-GCCATCTTCGA
* * * * *
51273379 TCTGCTTCACTTCTGCTTAGGAAGATGAGATTCGCCGTCTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-TCGCCATCTTCGA
* * * *** *
51273423 TCTGCTCTACTACTGCTTAAGGAGATAGGATCTAATATCTTTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATC-GCCATCTTCGA
* * ** *
51273467 CCTGCTCCACTACTGCTTAGGGAGACAAGATCTAACATCTTTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATC-GCCATCTTCGA
* * **** **
51273511 CCTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTTAAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATC-GCCATCTTCGA
* * * * *
51273554 TCTGCTTCACTACTGCTTAGGAAGATGAGATTTGCCATTTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-TCGCCATCTTCGA
* * **
51273598 TCTGTTCCACTACTGCTTAGGGAGATAAGATCTACCAT-TTTAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATC-GCCATCTTCGA
* * ** * * ***
51273641 TCCGCTCCACTGCAACTTTAGGGAGATAGGATTGGTTTCTTCTG-
1 TCTGCTCCACTACTGC-TTAGGGAGATAAGATCGCCATCTTC-GA
* * * *
51273685 TCTGCTCTACTACTGCTTAGGGAGATAAGA----CTTGGTGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCGCCAT-CTTCGA
* * * *
51273725 TCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATATTTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATC-GCCATCTTCGA
* * **** **
51273769 CCTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTTAAA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATC-GCCATCTTCGA
* * * * *
51273812 TCTGCTGCACTACTGCTTAGGAAGATGAGATTTGCCATTTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-TCGCCATCTTCGA
*
51273856 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATC-GCCATCTTCGA
*
51273900 CCTGCTCCACT
1 TCTGCTCCACT
51273911 GTAACCTCAG
Statistics
Matches: 534, Mismatches: 148, Indels: 44
0.74 0.20 0.06
Matches are distributed among these distances:
39 3 0.01
40 61 0.11
43 157 0.29
44 310 0.58
45 3 0.01
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.31
Consensus pattern (43 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATCGCCATCTTCGA
Found at i:51273382 original size:87 final size:87
Alignment explanation
Indices: 51273165--51273882 Score: 560
Period size: 87 Copynumber: 8.3 Consensus size: 87
51273155 GTTTTTTCTG
* * * *
51273165 TCTGCTCCGCTACTGCTTAGGGAGATAAGACTTGAT-GC---GATCTGCTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAGGAC-TGGTGGCTTAAATCTGCTCCACTACTGCTTAGG
* **
51273226 GAGATAGGACTCGTG---GCTTAAA
65 GAGATAGGA-TC-TGCCATCTTTGA
* * * * ** * **
51273248 TCTGCTTCACTACTGCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAGGACT-GGTGGCTTAAATCTGCTCCACTACTGCTTAGG
***
51273313 GAGATAGGATCTAATATCTTTGA
65 GAGATAGGATCTGCCATCTTTGA
* * * * *
51273336 CCTGCTCCACTACTGCTTAAGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTTCTGCTTAGGA
1 TCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTCCACTACTGCTTAGGG
* *
51273401 AGAT-GAGAT-TCGCCGTCTTCGA
66 AGATAG-GATCT-GCCATCTTTGA
* * ** ** ** *
51273423 TCTGCTCTACTACTGCTTAAGGAGATAGGATCTAATATCTTTGACCTGCTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAGGA-CTGGTGGCTTAAATCTGCTCCACTACTGCTTAGG
* * **
51273488 GAGACAAGATCTAACATCTTTGA
65 GAGATAGGATCTGCCATCTTTGA
* * *
51273511 CCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCACTACTGCTTAGGA
1 TCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTCCACTACTGCTTAGGG
*
51273576 AGAT-GAGATTTGCCAT-TTTCGA
66 AGATAG-GATCTGCCATCTTT-GA
* * * ** * * * **
51273598 TCTGTTCCACTACTGCTTAGGGAGATAAGA-T-CTACCATTTTAATCCGCTCCACTGCAACTTTA
1 TCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGC--TTAAATCTGCTCCACTACTGC-TTA
***
51273661 GGGAGATAGGAT-TGGTTTCTTCTG-
63 GGGAGATAGGATCTGCCATCTT-TGA
* * *
51273685 TCTGCTCTACTACTGCTTAGGGAGATAAGACTTGGT-GC---GATCTGCTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAGGAC-TGGTGGCTTAAATCTGCTCCACTACTGCTTAGG
* *
51273746 GAGATAGGATCTACCATATTTGA
65 GAGATAGGATCTGCCATCTTTGA
* * *
51273769 CCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTGCACTACTGCTTAGGA
1 TCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTCCACTACTGCTTAGGG
*
51273834 AGAT-GAGATTTGCCAT-TTTCGA
66 AGATAG-GATCTGCCATCTTT-GA
51273856 TCTGCTCCACTACTGCTTAGGGAGATA
1 TCTGCTCCACTACTGCTTAGGGAGATA
51273883 AGATCTACCA
Statistics
Matches: 499, Mismatches: 104, Indels: 60
0.75 0.16 0.09
Matches are distributed among these distances:
82 1 0.00
83 49 0.10
84 48 0.10
85 3 0.01
86 12 0.02
87 270 0.54
88 110 0.22
89 5 0.01
90 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.31
Consensus pattern (87 bp):
TCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTCCACTACTGCTTAGGG
AGATAGGATCTGCCATCTTTGA
Found at i:51273557 original size:131 final size:130
Alignment explanation
Indices: 51273203--51273910 Score: 548
Period size: 131 Copynumber: 5.4 Consensus size: 130
51273193 GACTTGATGC
* * ** * *
51273203 GATCTGCTCCACTACTGCTTAGGGAGATAGGA-CT--CGTGGCTTAAATCTGCTTCACTACTGCT
1 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCAT--CTTTGACCTGCTCCACTACTGCT
* * * ** * ** * *
51273265 TAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTAATAT
64 TAGGGAGATAGGACT-GGTGGCTTAAATCTGCTCTACTACTGCTTAAGGAGATAGGATCTAATAT
51273330 CTTT
128 -TTT
* * * ***** ** * * *
51273334 GACCTGCTCCACTACTGCTTAAGGAGATAGGA-CTGGTGGCTTAAATCTGCTTCACTTCTGCTTA
1 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTTGACCTGCTCCACTACTGCTTA
* * ** * **
51273398 GGAAGAT-GAGATTCGCCGTCTTCGATCTGCTCTACTACTGCTTAAGGAGATAGGATCTAATATC
66 GGGAGATAG-GACT-GGTGGCTTAAATCTGCTCTACTACTGCTTAAGGAGATAGGATCTAATAT-
51273462 TTT
128 TTT
* * *
51273465 GACCTGCTCCACTACTGCTTAGGGAGACAAGATCTAACATCTTTGACCTGCTCCACTACTGCTTA
1 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTTGACCTGCTCCACTACTGCTTA
* ***
51273530 GGGAGATAGGACTGGTGGCTTAAATCTGCT-TCACTACTGCTT-AGGAAGAT-GAGATTTGCCAT
66 GGGAGATAGGACTGGTGGCTTAAATCTGCTCT-ACTACTGCTTAAGG-AGATAG-GATCTAATAT
51273592 TTT
128 TTT
* * * **
51273595 CGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTACCAT-TTTAATCC-GCTCCACTGCAACT
1 -GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTTGA-CCTGCTCCACTACTGC-
* ** *** * * **
51273658 TTAGGGAGATAGGATTGGTTTCTTCTGTCTGCTCTACTACTGCTTAGGGAGATAAGA-CT--TGG
63 TTAGGGAGATAGGACTGGTGGCTTAAATCTGCTCTACTACTGCTTAAGGAGATAGGATCTAATAT
**
51273720 TGC
128 TTT
* *
51273723 GATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACCATATTTGACCTGCTCCACTACTGCTTA
1 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTTGACCTGCTCCACTACTGCTTA
* ***
51273788 GGGAGATAGGACTGGTGGCTTAAATCTGCTGC-ACTACTGCTT-AGGAAGAT-GAGATTTGCCAT
66 GGGAGATAGGACTGGTGGCTTAAATCTGCT-CTACTACTGCTTAAGG-AGATAG-GATCTAATAT
51273850 TTT
128 TTT
*
51273853 CGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTCGACCTGCTCCACT
1 -GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTTGACCTGCTCCACT
51273911 GTAACCTCAG
Statistics
Matches: 477, Mismatches: 77, Indels: 46
0.80 0.13 0.08
Matches are distributed among these distances:
126 2 0.00
127 83 0.17
128 17 0.04
130 24 0.05
131 315 0.66
132 34 0.07
133 2 0.00
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (130 bp):
GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACCATCTTTGACCTGCTCCACTACTGCTTA
GGGAGATAGGACTGGTGGCTTAAATCTGCTCTACTACTGCTTAAGGAGATAGGATCTAATATTTT
Found at i:51273664 original size:175 final size:175
Alignment explanation
Indices: 51273247--51273795 Score: 598
Period size: 175 Copynumber: 3.2 Consensus size: 175
51273237 CGTGGCTTAA
* * ** * ** * **
51273247 ATCTGCTTCACTACTGCTTAGGAAGATAAGAT-TCGCCGTCTTCGATCTGCTCCACTACTGCTTA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-AACATCTTTAACCTGCTCCACTACAACTTA
*
51273311 GGGAGATAGGATCTAATATCTTTGACCTGCTCCACTACTGCTTAAGGAGATAGGACTGGTGGCTT
65 GGGAGATAGGATCTAATATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTT
* * * *
51273376 AAATCTGCTTCACTTCTGCTTAGGAAGATGAGATTCGCCGTCTTCG
130 AAATCTGCTTCACTACTGCTTAGGAAGATGAGATTTGCCATTTTCG
* * * * * **
51273422 ATCTGCTCTACTACTGCTTAAGGAGATAGGATCTAATATCTTTGACCTGCTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTAACATCTTTAACCTGCTCCACTACAACTTAG
* * *
51273487 GGAGACAAGATCTAACATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTA
66 GGAGATAGGATCTAATATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTA
51273552 AATCTGCTTCACTACTGCTTAGGAAGATGAGATTTGCCATTTTCG
131 AATCTGCTTCACTACTGCTTAGGAAGATGAGATTTGCCATTTTCG
* * *
51273597 ATCTGTTCCACTACTGCTTAGGGAGATAAGATCTACCAT-TTTAATCC-GCTCCACTGCAACTTT
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTAACATCTTTAA-CCTGCTCCACTACAAC-TT
** * * * *
51273660 AGGGAGATAGGAT-TGGTTTCTTCTG-TCTGCTCTACTACTGCTTAGGGAGATAAGACTTGGT-G
64 AGGGAGATAGGATCTAATATCTT-TGACCTGCTCCACTACTGCTTAGGGAGATAGGAC-TGGTGG
* * * * *
51273722 C---GATCTGCTCCACTACTGCTTAGGGAGAT-AGGATCTACCATATTT-G
127 CTTAAATCTGCTTCACTACTGCTTAGGAAGATGA-GATTTGCCAT-TTTCG
*
51273768 ACCTGCTCCACTACTGCTTAGGGAGATA
1 ATCTGCTCCACTACTGCTTAGGGAGATA
51273796 GGACTGGTGG
Statistics
Matches: 322, Mismatches: 45, Indels: 18
0.84 0.12 0.05
Matches are distributed among these distances:
170 1 0.00
171 60 0.19
172 3 0.01
174 49 0.15
175 208 0.65
176 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.32
Consensus pattern (175 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTAACATCTTTAACCTGCTCCACTACAACTTAG
GGAGATAGGATCTAATATCTTTGACCTGCTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTA
AATCTGCTTCACTACTGCTTAGGAAGATGAGATTTGCCATTTTCG
Found at i:51273958 original size:46 final size:46
Alignment explanation
Indices: 51273874--51274687 Score: 431
Period size: 44 Copynumber: 18.3 Consensus size: 46
51273864 ACTACTGCTT
* *
51273874 AGGGAGATAAGATCT-ACCA-TCTTCGACCTGCTCCACTGTAACCTC
1 AGGGAGATAAGATCTGA-AATTCTTCGATCTGCTCCACTGTAACCTC
* *
51273919 AGGGAGATAAGATCTGAAATTCTTCGGT-TGACTCCACTGTAACCTT
1 AGGGAGATAAGATCTGAAATTCTTCGATCTG-CTCCACTGTAACCTC
* * * * *
51273965 AGGGAGATAAGATTTG----T-TGCGATCTACTCTACTGTAACTTC
1 AGGGAGATAAGATCTGAAATTCTTCGATCTGCTCCACTGTAACCTC
* * ** * * *
51274006 AGAGAGATGAGATCCT-TTATT-TT-AATCCGCTCCACTGTAACTTC
1 AGGGAGATAAGAT-CTGAAATTCTTCGATCTGCTCCACTGTAACCTC
* * * * *
51274050 AGGGAGATAGGAT-T--ACTAGCTCCAATCTGCTCCACTGTAACCTC
1 AGGGAGATAAGATCTGAAAT-TCTTCGATCTGCTCCACTGTAACCTC
**
51274094 AGGGAGATAAGATCTGAAATTCTTC-AGTCCACTCCACTGTAACCTC
1 AGGGAGATAAGATCTGAAATTCTTCGA-TCTGCTCCACTGTAACCTC
* * * * * *
51274140 AGGGAGATAAGA-CTTG-CA-TATTCAAACTGCCCCACTGTAACTTC
1 AGGGAGATAAGATC-TGAAATTCTTCGATCTGCTCCACTGTAACCTC
* * * * *
51274184 AGGGAGATAAGGTTTG---TGGCTTCGATCTGCTCCTCTGTAATCTC
1 AGGGAGATAAGATCTGAAAT-TCTTCGATCTGCTCCACTGTAACCTC
* * *
51274228 AGGGAGATAAGATCT---CTGGCTTCAATCTGCTCCACTGTAACCTC
1 AGGGAGATAAGATCTGAAAT-TCTTCGATCTGCTCCACTGTAACCTC
* * *
51274272 AGGGAGATAAGAAT-TGAAATTCTTCGGTCTACTCCACTGTAATCTC
1 AGGGAGATAAG-ATCTGAAATTCTTCGATCTGCTCCACTGTAACCTC
* * * *
51274318 AGGGAGATAAGACCTAAAATTCTTCGGTCTACTCCACTGTAACCTC
1 AGGGAGATAAGATCTGAAATTCTTCGATCTGCTCCACTGTAACCTC
* * * * *
51274364 AGGGAGATAAGA-CTTG-CA-TATTCAACCTGC-CCTACTGTAACTTC
1 AGGGAGATAAGATC-TGAAATTCTTCGATCTGCTCC-ACTGTAACCTC
* * * * *
51274408 AGGGAGATAAGGT-TCG---TGGCTTCGATCTGCTCCTCTATAATCTC
1 AGGGAGATAAGATCT-GAAAT-TCTTCGATCTGCTCCACTGTAACCTC
* * *
51274452 AGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAATCTC
1 AGGGAGATAAGATCTGAAATTCTTCGATCTGCTCCACTGTAACCTC
* * * * * *
51274498 AGGGAGATAAGA-CTTG-CA-TATTCAACCTGCCCCACTGTAACTTC
1 AGGGAGATAAGATC-TGAAATTCTTCGATCTGCTCCACTGTAACCTC
* * * * ** *
51274542 AGGGAGATAAGGTTTG-TA-GCTTCGATCTGCTCTTCTGTAACTTC
1 AGGGAGATAAGATCTGAAATTCTTCGATCTGCTCCACTGTAACCTC
* * ** * * * *
51274586 AGAGAGATATGATCCT-TTATT-TT-AATCCGCTCCACTATAACTTC
1 AGGGAGATAAGAT-CTGAAATTCTTCGATCTGCTCCACTGTAACCTC
* * * *
51274630 AGGGAGATAGGA--T--AGTGTCTTCGATCTGCTCCGCTGTAATCTC
1 AGGGAGATAAGATCTGAAAT-TCTTCGATCTGCTCCACTGTAACCTC
51274673 AGGGAGATAAGATCT
1 AGGGAGATAAGATCT
51274688 CTGGCTCTTT
Statistics
Matches: 593, Mismatches: 128, Indels: 96
0.73 0.16 0.12
Matches are distributed among these distances:
40 1 0.00
41 30 0.05
42 6 0.01
43 30 0.05
44 301 0.51
45 41 0.07
46 180 0.30
47 4 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (46 bp):
AGGGAGATAAGATCTGAAATTCTTCGATCTGCTCCACTGTAACCTC
Found at i:51274189 original size:134 final size:132
Alignment explanation
Indices: 51274037--51274283 Score: 336
Period size: 134 Copynumber: 1.9 Consensus size: 132
51274027 TTAATCCGCT
51274037 CCACTGTAACTTCAGGGAGAT-AGGATTACTAGCTCCAATCTGCTCCACTGTAACCTCAGGGAGA
1 CCACTGTAACTTCAGGGAGATAAGG-TTACTAGCTCCAATCTGCTCCACTGTAACCTCAGGGAGA
* *
51274101 TAAGATCTGAAAT-TCTTCAGTCCACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAA
65 TAAGATCT---ATGGCTTCAATCCACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAA
51274165 ACTGCC
127 ACTGCC
** * * * * *
51274171 CCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGAT
1 CCACTGTAACTTCAGGGAGATAAGGTTACTAGCTCCAATCTGCTCCACTGTAACCTCAGGGAGAT
* **
51274236 AAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGA
66 AAGATCTATGGCTTCAATCCACTCCACTGTAACCTCAGGGAGATAAGA
51274284 ATTGAAATTC
Statistics
Matches: 99, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
131 1 0.01
132 34 0.34
134 61 0.62
135 3 0.03
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.27
Consensus pattern (132 bp):
CCACTGTAACTTCAGGGAGATAAGGTTACTAGCTCCAATCTGCTCCACTGTAACCTCAGGGAGAT
AAGATCTATGGCTTCAATCCACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAAACTG
CC
Found at i:51274490 original size:134 final size:134
Alignment explanation
Indices: 51274203--51274599 Score: 489
Period size: 134 Copynumber: 2.9 Consensus size: 134
51274193 AGGTTTGTGG
* * * * * *
51274203 CTTCGATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTCTGGC---TTCAATCTGCTCCACTG
1 CTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGA-CT-T-GCATATTCAACCTGCCCCACTG
* * * * * * *
51274265 TAACCTCAGGGAGATAAGAATT-GAAATTCTTCGGTCTACTCCACTGTAATCTCAGGGAGATAAG
63 TAACTTCAGGGAGATAAG-GTTCG-TA-GCTTCGATCTGCTCCTCTGTAATCTCAGGGAGATAAG
*
51274329 ACCTAAAATT
125 ATCTAAAATT
*
51274339 CTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAACCTGCCCTACTGTAA
1 CTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAACCTGCCCCACTGTAA
* * *
51274404 CTTCAGGGAGATAAGGTTCGTGGCTTCGATCTGCTCCTCTATAATCTCAGGGAGATAAGATCTGA
66 CTTCAGGGAGATAAGGTTCGTAGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTAA
51274469 AATT
131 AATT
*
51274473 CTTCGGTCTACTCCACTGTAATCTCAGGGAGATAAGACTTGCATATTCAACCTGCCCCACTGTAA
1 CTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAACCTGCCCCACTGTAA
* * * *
51274538 CTTCAGGGAGATAAGGTTTGTAGCTTCGATCTGCTCTTCTGTAA-CTTCAGAGAGATATGATC
66 CTTCAGGGAGATAAGGTTCGTAGCTTCGATCTGCTCCTCTGTAATC-TCAGGGAGATAAGATC
51274600 CTTTATTTTA
Statistics
Matches: 230, Mismatches: 26, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
133 3 0.01
134 158 0.69
135 4 0.02
136 65 0.28
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (134 bp):
CTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAACCTGCCCCACTGTAA
CTTCAGGGAGATAAGGTTCGTAGCTTCGATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTAA
AATT
Found at i:51274503 original size:358 final size:351
Alignment explanation
Indices: 51273874--51274685 Score: 991
Period size: 358 Copynumber: 2.3 Consensus size: 351
51273864 ACTACTGCTT
* * * *
51273874 AGGGAGATAAGATCTACCATCTTCGACCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT
1 AGGGAGATAAGATCT-CTAACTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-TGAAAT
* * * *
51273939 TCTTCGGT-TGACTCCACTGTAACCTTAGGGAGATAAGATTTGTTGCGATCTACTCTACTGTAAC
64 TCTTCGGTCT-ACTCCACTGTAATCTCAGGGAGATAAGATTTCTTGCGATCTACTCCACTGTAAC
* * * *
51274003 TTCAGAGAGATGAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTACTA
128 CTCAGAGAGATAAGA-CCTTCATTTCAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTACTA
*
51274068 GCTCCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCAGTCCACTCCACTG
192 GCTCCAATCTGCTCCACTATAACCTCAGGGAGATAAGATCTGAAATTCTTCAGTCCACTCCACTG
51274133 TAACCTCAGGGAGATAAGACTTGCATATTCAAACTGCCCCACTGTAACTTCAGGGAGATAAGGTT
257 TAACCTCAGGGAGATAAGACTTGCATATTCAAACTGCCCCACTGTAACTTCAGGGAGATAAGGTT
*
51274198 TGTGGCTTCGATCTGCTCCTCTGTAA-TCTC
322 TGTAGCTTCGATCTGCTCCTCTGTAACT-TC
**
51274228 AGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGAATTGAAATT
1 AGGGAGATAAGATCTCTAACTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAG-ATTGAAATT
*
51274293 CTTCGGTCTACTCCACTGTAATCTCAGGGAGATAAGACCTAAAATTCTT-CGGTCTACTCCACTG
65 CTTCGGTCTACTCCACTGTAATCTCAGGGAGATAAGA--T----TTCTTGCGATCTACTCCACTG
*
51274357 TAACCTCAGGGAGATAAGA-CTTGCATATTCAA-CCTGC-CCTACTGTAACTTCAGGGAGATAAG
124 TAACCTCAGAGAGATAAGACCTT-CAT-TTCAATCC-GCTCC-ACTGTAACTTCAGGGAGAT-AG
* * * * * * *
51274419 G-TT-CGTGGCTTCGATCTGCTCCTCTATAATCTCAGGGAGATAAGATCTGAAATTCTTCGGTCT
184 GATTAC-TAGCTCCAATCTGCTCCACTATAACCTCAGGGAGATAAGATCTGAAATTCTTCAGTCC
* *
51274482 ACTCCACTGTAATCTCAGGGAGATAAGACTTGCATATTCAACCTGCCCCACTGTAACTTCAGGGA
248 ACTCCACTGTAACCTCAGGGAGATAAGACTTGCATATTCAAACTGCCCCACTGTAACTTCAGGGA
*
51274547 GATAAGGTTTGTAGCTTCGATCTGCTCTTCTGTAACTTC
313 GATAAGGTTTGTAGCTTCGATCTGCTCCTCTGTAACTTC
* * * * * * * * * *
51274586 AGAGAGATATGATC-CTTTATTTTAATCCGCTCCACTATAACTTCAGGGAGATAGGA-T--AGTG
1 AGGGAGATAAGATCTC-TAACTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATTGAAAT-
* * *
51274647 TCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
64 TCTTCGGTCTACTCCACTGTAATCTCAGGGAGATAAGAT
51274686 CTCTGGCTCT
Statistics
Matches: 400, Mismatches: 41, Indels: 35
0.84 0.09 0.07
Matches are distributed among these distances:
353 76 0.19
354 20 0.05
355 36 0.09
356 4 0.01
357 9 0.02
358 247 0.62
359 8 0.02
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (351 bp):
AGGGAGATAAGATCTCTAACTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATTGAAATTC
TTCGGTCTACTCCACTGTAATCTCAGGGAGATAAGATTTCTTGCGATCTACTCCACTGTAACCTC
AGAGAGATAAGACCTTCATTTCAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTACTAGCTC
CAATCTGCTCCACTATAACCTCAGGGAGATAAGATCTGAAATTCTTCAGTCCACTCCACTGTAAC
CTCAGGGAGATAAGACTTGCATATTCAAACTGCCCCACTGTAACTTCAGGGAGATAAGGTTTGTA
GCTTCGATCTGCTCCTCTGTAACTTC
Found at i:51274535 original size:224 final size:221
Alignment explanation
Indices: 51274076--51274552 Score: 679
Period size: 224 Copynumber: 2.1 Consensus size: 221
51274066 TAGCTCCAAT
* *
51274076 CTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCAGTCCACTCCACTGTAACCTCA
1 CTGCTCCACTGTAA-CTCAGGGAGATAAGACCTAAAATTCTTCAGTCCACTCCACTGTAACCTCA
*
51274141 GGGAGATAAGACTTGCATATTCAAACTGCCCCACTGTAACTTCAGGGAGATAAGGTTTGTGGCTT
65 GGGAGATAAGACTTGCATATTCAAACTGCCCCACTGTAACTTCAGGGAGATAAGGTTCGTGGCTT
* * *
51274206 CGATCTGCTCCTCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCT
130 CGATCTGCTCCTCTATAATCTCAGGGAGATAAGATCTATGGCTTCAATCTACTCCACTGTAACCT
**
51274271 CAGGGAGATAAGAATTGAAATTCTTCGG
195 CAGGGAGATAAGAATTGAAATTCAAC-G
* * *
51274299 TCTACTCCACTGTAATCTCAGGGAGATAAGACCTAAAATTCTTCGGTCTACTCCACTGTAACCTC
1 -CTGCTCCACTGTAA-CTCAGGGAGATAAGACCTAAAATTCTTCAGTCCACTCCACTGTAACCTC
* *
51274364 AGGGAGATAAGACTTGCATATTCAACCTGCCCTACTGTAACTTCAGGGAGATAAGGTTCGTGGCT
64 AGGGAGATAAGACTTGCATATTCAAACTGCCCCACTGTAACTTCAGGGAGATAAGGTTCGTGGCT
* **
51274429 TCGATCTGCTCCTCTATAATCTCAGGGAGATAAGATCTGAAAT-TCTTCGGTCTACTCCACTGTA
129 TCGATCTGCTCCTCTATAATCTCAGGGAGATAAGATCT---ATGGCTTCAATCTACTCCACTGTA
* * *
51274493 ATCTCAGGGAGATAAGACTTGCATATTCAAC-
191 ACCTCAGGGAGATAAGAATTG-AAATTCAACG
*
51274524 CTGCCCCACTGTAACTTCAGGGAGATAAG
1 CTGCTCCACTGTAAC-TCAGGGAGATAAG
51274553 GTTTGTAGCT
Statistics
Matches: 226, Mismatches: 22, Indels: 10
0.88 0.09 0.04
Matches are distributed among these distances:
223 1 0.00
224 182 0.81
226 36 0.16
227 7 0.03
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.28
Consensus pattern (221 bp):
CTGCTCCACTGTAACTCAGGGAGATAAGACCTAAAATTCTTCAGTCCACTCCACTGTAACCTCAG
GGAGATAAGACTTGCATATTCAAACTGCCCCACTGTAACTTCAGGGAGATAAGGTTCGTGGCTTC
GATCTGCTCCTCTATAATCTCAGGGAGATAAGATCTATGGCTTCAATCTACTCCACTGTAACCTC
AGGGAGATAAGAATTGAAATTCAACG
Found at i:51275991 original size:20 final size:20
Alignment explanation
Indices: 51275962--51276012 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
51275952 AGCCTCTCCA
* *
51275962 TTTTTT-AATTTTCTTTTTC
1 TTTTTTCAATTTTCATTCTC
51275981 TTTTTTCAATTTTCATTCTC
1 TTTTTTCAATTTTCATTCTC
*
51276001 ATTTTTC-ATTTT
1 TTTTTTCAATTTT
51276013 TTCAGAGTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 11 0.39
20 17 0.61
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTTTTCAATTTTCATTCTC
Found at i:51277739 original size:26 final size:28
Alignment explanation
Indices: 51277710--51277765 Score: 64
Period size: 25 Copynumber: 2.1 Consensus size: 28
51277700 TGAAATAATC
*
51277710 AGAAATAATTATTCAAAAA-GAATG-AA
1 AGAAATAATTACTCAAAAAGGAATGCAA
* *
51277736 AG-AATATTTGCTCAAAAAGGAATGCAA
1 AGAAATAATTACTCAAAAAGGAATGCAA
51277763 AGA
1 AGA
51277766 TGTATTTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
25 13 0.54
26 7 0.29
27 4 0.17
ACGTcount: A:0.55, C:0.07, G:0.16, T:0.21
Consensus pattern (28 bp):
AGAAATAATTACTCAAAAAGGAATGCAA
Found at i:51281749 original size:26 final size:25
Alignment explanation
Indices: 51281681--51281775 Score: 70
Period size: 26 Copynumber: 3.8 Consensus size: 25
51281671 TAAGATATGC
** **
51281681 AAAAATATGTATGTACGTGCAT-AT
1 AAAAATATGTATGTATATAAATAAT
* *
51281705 AAAAATATATATACT-TATAAA-AAT
1 AAAAATATGTAT-GTATATAAATAAT
51281729 AAAAGGATATGTATGTATATAAATTAAT
1 AAAA--ATATGTATGTATATAAA-TAAT
*
51281757 AATAATATGTATGTATATA
1 AAAAATATGTATGTATATA
51281776 CGGATTTATA
Statistics
Matches: 55, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
24 19 0.35
25 2 0.04
26 28 0.51
28 6 0.11
ACGTcount: A:0.51, C:0.03, G:0.11, T:0.36
Consensus pattern (25 bp):
AAAAATATGTATGTATATAAATAAT
Found at i:51282026 original size:3 final size:3
Alignment explanation
Indices: 51282018--51282057 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
51282008 ACAAATAGGC
*
51282018 AAT AAT AAT AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
51282058 GGACTAAATC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:51282798 original size:25 final size:23
Alignment explanation
Indices: 51282742--51282799 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 23
51282732 TAGATTTGCG
* *
51282742 AAGAAAAA-AAATAAAACAAAAT
1 AAGAAAAATAAATAAAAAAAAAC
51282764 AAGATAAAATAAATAAATAAAAAAC
1 AAGA-AAAATAAATAAA-AAAAAAC
51282789 AAGAAGAAATA
1 AAGAA-AAATA
51282800 GTAAGGATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
22 4 0.13
23 4 0.13
24 8 0.27
25 14 0.47
ACGTcount: A:0.78, C:0.03, G:0.07, T:0.12
Consensus pattern (23 bp):
AAGAAAAATAAATAAAAAAAAAC
Found at i:51286754 original size:23 final size:23
Alignment explanation
Indices: 51286728--51286787 Score: 68
Period size: 25 Copynumber: 2.6 Consensus size: 23
51286718 CAATTTAAAT
51286728 TAATCAATTAATTTTATATTATC
1 TAATCAATTAATTTTATATTATC
* * *
51286751 TAATCACATAATATTTTATTTTGTC
1 TAATCA-ATTA-ATTTTATATTATC
51286776 TAATC-ATTAATT
1 TAATCAATTAATT
51286788 AATGTTTATA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
22 3 0.10
23 9 0.29
24 3 0.10
25 16 0.52
ACGTcount: A:0.37, C:0.10, G:0.02, T:0.52
Consensus pattern (23 bp):
TAATCAATTAATTTTATATTATC
Found at i:51287171 original size:17 final size:17
Alignment explanation
Indices: 51287141--51287174 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
51287131 TAATGAATTT
51287141 AAATTTAATAAATTTAA
1 AAATTTAATAAATTTAA
51287158 AAATATTAAT-AATTTAA
1 AAAT-TTAATAAATTTAA
51287175 TCTAATTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
AAATTTAATAAATTTAA
Found at i:51293132 original size:21 final size:22
Alignment explanation
Indices: 51293103--51293149 Score: 87
Period size: 21 Copynumber: 2.2 Consensus size: 22
51293093 AAATTAATTA
51293103 GAATGAGCTCAGCTTTAGACAC
1 GAATGAGCTCAGCTTTAGACAC
51293125 GAAT-AGCTCAGCTTTAGACAC
1 GAATGAGCTCAGCTTTAGACAC
51293146 GAAT
1 GAAT
51293150 TTTCCTCGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.34, C:0.21, G:0.21, T:0.23
Consensus pattern (22 bp):
GAATGAGCTCAGCTTTAGACAC
Found at i:51296904 original size:36 final size:37
Alignment explanation
Indices: 51296830--51296906 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
51296820 ATTGTAATTG
* *
51296830 TTAAAATATACTATTAGTCCTTTTACTTTTTACAAAT
1 TTAAAATATACTATTAGTACTTTTACTTTTTAAAAAT
*
51296867 TTAAAATTTAACTATTA-TACTTTTAC-TTTTAAAAAT
1 TTAAAATAT-ACTATTAGTACTTTTACTTTTTAAAAAT
51296903 TTAA
1 TTAA
51296907 TCTTTTTATT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
36 13 0.36
37 16 0.44
38 7 0.19
ACGTcount: A:0.39, C:0.10, G:0.01, T:0.49
Consensus pattern (37 bp):
TTAAAATATACTATTAGTACTTTTACTTTTTAAAAAT
Found at i:51297586 original size:22 final size:22
Alignment explanation
Indices: 51297558--51297600 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
51297548 ATTAGGGTTT
51297558 AGGG-TTTAGGGTTAAGGTTTTG
1 AGGGTTTTA-GGTTAAGGTTTTG
*
51297580 AGGGTTTTAGGTTTAGGTTTT
1 AGGGTTTTAGGTTAAGGTTTT
51297601 TAAAGAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.16, C:0.00, G:0.37, T:0.47
Consensus pattern (22 bp):
AGGGTTTTAGGTTAAGGTTTTG
Found at i:51297599 original size:6 final size:7
Alignment explanation
Indices: 51297549--51297596 Score: 53
Period size: 7 Copynumber: 6.7 Consensus size: 7
51297539 CCTGCTAGGA
51297549 TTAGGGT
1 TTAGGGT
51297556 TTAGGGT
1 TTAGGGT
51297563 TTAGGGT
1 TTAGGGT
* *
51297570 TAAGGTT
1 TTAGGGT
51297577 TTGAGGGTT
1 TT-AGGG-T
51297586 TTA-GGT
1 TTAGGGT
51297592 TTAGG
1 TTAGG
51297597 TTTTTAAAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
6 4 0.12
7 23 0.68
8 4 0.12
9 3 0.09
ACGTcount: A:0.17, C:0.00, G:0.40, T:0.44
Consensus pattern (7 bp):
TTAGGGT
Found at i:51297745 original size:89 final size:92
Alignment explanation
Indices: 51297627--51297917 Score: 277
Period size: 96 Copynumber: 3.1 Consensus size: 92
51297617 TAAATAAGGG
* * * * * *
51297627 ATTAGGGTTCAGAGTTTCTTAATTAAATTAATTATAAAATTTTCAAAATTAGA-T-GTTTTGTGT
1 ATTAGGGTTTAGAGTTACTTGAGTAAATTAATTATAAAATTTTAAAAATTAGATTGGTTTAGTG-
* *** *
51297690 TTATG-GTTTTT-TTTAAAATCAATTAA
65 TTAAGAGTTTTTAGGAAAAATCAAATAA
* *
51297716 ATTAGGGTTTAGAGTTACTTGAGTAAATTAATTAAAAAAATTTAAAAAATTAGATTAGGGTTTAG
1 ATTAGGGTTTAGAGTTACTTGAGTAAATTAATT-ATAAAATTTTAAAAATTAGATT--GGTTTAG
51297781 TGTTAAGAGTTTTTAAGGAAAAATCAAATAA
63 TGTTAAGAGTTTTT-AGGAAAAATCAAATAA
* * * *
51297812 ATTAAGGTTTAGGGTTACTTGAGTAAATTAATTAT-AAATTTTAAAAAAATAGCTTAGGGTTTAG
1 ATTAGGGTTTAGAGTTACTTGAGTAAATTAATTATAAAATTTT-AAAAATTAGATT--GGTTTAG
* * *
51297876 TGTTTAGGGGTTTTAAGGAAAAACTCAAATAA
63 TG-TTAAGAGTTTTTAGGAAAAA-TCAAATAA
51297908 ATTAGGGTTT
1 ATTAGGGTTT
51297918 GGGGTTTAGA
Statistics
Matches: 168, Mismatches: 23, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
89 29 0.17
90 17 0.10
91 1 0.01
93 4 0.02
94 19 0.11
95 30 0.18
96 68 0.40
ACGTcount: A:0.39, C:0.03, G:0.17, T:0.40
Consensus pattern (92 bp):
ATTAGGGTTTAGAGTTACTTGAGTAAATTAATTATAAAATTTTAAAAATTAGATTGGTTTAGTGT
TAAGAGTTTTTAGGAAAAATCAAATAA
Found at i:51297923 original size:96 final size:96
Alignment explanation
Indices: 51297704--51297923 Score: 325
Period size: 96 Copynumber: 2.3 Consensus size: 96
51297694 GGTTTTTTTT
* * *
51297704 AAAATCAATTAAATTAGGGTTTAGAGTTACTTGAGTAAATTAATTAAAAAAATTTAAAAAATTAG
1 AAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAAAAAAATTTAAAAAAATAG
*
51297769 ATTAGGGTTTAGTGTTAAGAGTTTTTAAGGA
66 ATTAGGGTTTAGTGTTAAGAGGTTTTAAGGA
* * *
51297800 AAAATCAAATAAATTAAGGTTTAGGGTTACTTGAGTAAATTAATT-ATAAATTTTAAAAAAATAG
1 AAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAAAAAAATTTAAAAAAATAG
* * *
51297864 CTTAGGGTTTAGTGTTTAGGGGTTTTAAGGA
66 ATTAGGGTTTAGTGTTAAGAGGTTTTAAGGA
*
51297895 AAAACTCAAATAAATTAGGGTTTGGGGTT
1 AAAA-TCAAATAAATTAGGGTTTAGGGTT
51297924 TAGAGTTACT
Statistics
Matches: 111, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
95 47 0.42
96 64 0.58
ACGTcount: A:0.41, C:0.03, G:0.20, T:0.36
Consensus pattern (96 bp):
AAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAAAAAAATTTAAAAAAATAG
ATTAGGGTTTAGTGTTAAGAGGTTTTAAGGA
Found at i:51298186 original size:126 final size:126
Alignment explanation
Indices: 51297960--51298372 Score: 657
Period size: 126 Copynumber: 3.3 Consensus size: 126
51297950 TAATTTAAAA
* * * * * *
51297960 AAGCTCCCATGTAGACGCTCTTTTGCTACAATAGCTCCTTAAAAAATAATTTCGAGAAGACGTTT
1 AAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGACGTTT
*
51298025 CTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCATTATCAGCAAAAGTACTGAAAG
66 CTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
*
51298086 AAGCTCCCACGTGGACGAGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGACGTTT
1 AAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGACGTTT
* * *
51298151 CTAAGCAAATAGTGTTAAAAACGCTTTAAGTAGGATGCATTGTCAGCAAAAGTACTGAAAG
66 CTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
* * *
51298212 AAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCTTGAAAAAAAAATTT-AAGTAGACGTTT
1 AAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGACGTTT
* * *
51298276 CTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATACTTTGTCAGCAAAAGTATTGAAAG
66 CTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
*
51298337 AAGCTCTCACGTGGACGCGCTTTTGCTACAGTAGCT
1 AAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCT
51298373 TCTGTTTGGC
Statistics
Matches: 265, Mismatches: 22, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
125 101 0.38
126 164 0.62
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (126 bp):
AAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGACGTTT
CTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
Found at i:51301591 original size:34 final size:34
Alignment explanation
Indices: 51301576--51301643 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
51301566 TGTAAAAGTA
*
51301576 AATTTCTATTTTATTACATGAAATAATATAGAAG
1 AATTTCTATTTTATTACATGAAATAATATAAAAG
* *
51301610 AATTTCTATTTTATTACGTCAAATAATATCAAAA
1 AATTTCTATTTTATTACATGAAATAATAT-AAAA
51301644 TGTTTGTACA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 27 0.90
35 3 0.10
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (34 bp):
AATTTCTATTTTATTACATGAAATAATATAAAAG
Found at i:51301781 original size:21 final size:22
Alignment explanation
Indices: 51301757--51301805 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
51301747 AGCTTCTGGC
*
51301757 GGGGGTTGTGGTTACTCTAG-A
1 GGGGATTGTGGTTACTCTAGTA
* *
51301778 GGGGATTTTGGTTCCTCTAGTA
1 GGGGATTGTGGTTACTCTAGTA
51301800 GGGGAT
1 GGGGAT
51301806 CTGGTTATCG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.14, C:0.10, G:0.41, T:0.35
Consensus pattern (22 bp):
GGGGATTGTGGTTACTCTAGTA
Found at i:51301810 original size:21 final size:21
Alignment explanation
Indices: 51301765--51301812 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
51301755 GCGGGGGTTG
*
51301765 TGGTTACTCTAGAGGGGATTT
1 TGGTTACTCTAGAGGGGATTC
*
51301786 TGGTTCCTCTAGTAGGGGA-TC
1 TGGTTACTCTAG-AGGGGATTC
51301807 TGGTTA
1 TGGTTA
51301813 TCGGTGTTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 17 0.74
22 6 0.26
ACGTcount: A:0.17, C:0.12, G:0.33, T:0.38
Consensus pattern (21 bp):
TGGTTACTCTAGAGGGGATTC
Found at i:51302093 original size:18 final size:18
Alignment explanation
Indices: 51302053--51302095 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
51302043 GACTAGAAAC
* * *
51302053 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
*
51302071 TGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
51302089 AGGATAC
1 AGGATAC
51302096 GTACCTGACA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.09, G:0.28, T:0.21
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:51315177 original size:2 final size:2
Alignment explanation
Indices: 51315170--51315211 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
51315160 TTTAATTAAG
51315170 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
51315212 TTTCTTTATC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:51316889 original size:14 final size:14
Alignment explanation
Indices: 51316872--51316898 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
51316862 TCTACTTATG
51316872 TTTTTTTCTTTTTC
1 TTTTTTTCTTTTTC
51316886 TTTTTTTCTTTTT
1 TTTTTTTCTTTTT
51316899 TTGCAGCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (14 bp):
TTTTTTTCTTTTTC
Found at i:51318249 original size:7 final size:7
Alignment explanation
Indices: 51318237--51318264 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
51318227 TTATGACATT
51318237 TTGCCAG
1 TTGCCAG
51318244 TTGCCAG
1 TTGCCAG
51318251 TTGCCAG
1 TTGCCAG
51318258 TTGCCAG
1 TTGCCAG
51318265 GGATGGTCTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.14, C:0.29, G:0.29, T:0.29
Consensus pattern (7 bp):
TTGCCAG
Found at i:51327267 original size:45 final size:44
Alignment explanation
Indices: 51327216--51327453 Score: 298
Period size: 45 Copynumber: 5.3 Consensus size: 44
51327206 GTATCATACT
* * * * *
51327216 GAAGAGAAATGGAATAAGCCTTCTAGACCCGTTCAGTATGACGTC
1 GAAGAGAAATGGAATAAGCCATCTAGTCCTGTTCGGTATG-TGTC
*
51327261 GAAGAGAAATGGAATAAGCCATCGAGTCCTGTTCGGTATCGTGTC
1 GAAGAGAAATGGAATAAGCCATCTAGTCCTGTTCGGTAT-GTGTC
*
51327306 GAAGAGAAATGGAATAAGCCCTCTAGTCCTGTTCGGTATCGTGTC
1 GAAGAGAAATGGAATAAGCCATCTAGTCCTGTTCGGTAT-GTGTC
51327351 GAAGAGAAATGGAATAAGCCATCTAGTCCTGTT-GGTTATGGTGTC
1 GAAGAGAAATGGAATAAGCCATCTAGTCCTGTTCGG-TAT-GTGTC
* * * * **
51327396 GAAGAGAAATGGAGTAGGCCTTCGAGTCCTGTTCGGTACCATGTC
1 GAAGAGAAATGGAATAAGCCATCTAGTCCTGTTCGGTA-TGTGTC
51327441 GAAGAGAAATGGA
1 GAAGAGAAATGGA
51327454 CGAACCGGCC
Statistics
Matches: 173, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
44 2 0.01
45 168 0.97
46 3 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (44 bp):
GAAGAGAAATGGAATAAGCCATCTAGTCCTGTTCGGTATGTGTC
Done.