Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 ID=Chr13-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58321163
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 747533 characters in sequence are not A, C, G, or T
File 197 of 199
Found at i:57523394 original size:25 final size:28
Alignment explanation
Indices: 57523366--57523422 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 28
57523356 CGTTGTTGTT
57523366 GTTTTTTTTT-A-A-TTCCATGTTTTTA
1 GTTTTTTTTTAAGATTTCCATGTTTTTA
57523391 GTTTTTTTTTAATGATTTCCATGTTTTTA
1 GTTTTTTTTTAA-GATTTCCATGTTTTTA
57523420 GTT
1 GTT
57523423 AAAAATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
25 10 0.36
26 1 0.04
28 1 0.04
29 16 0.57
ACGTcount: A:0.16, C:0.07, G:0.11, T:0.67
Consensus pattern (28 bp):
GTTTTTTTTTAAGATTTCCATGTTTTTA
Found at i:57525282 original size:31 final size:29
Alignment explanation
Indices: 57525212--57525285 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
57525202 AGCTCGTATT
* *
57525212 ACATTTTAGTCACTTATGTTTGAAATGTT
1 ACATTTTAGTCACTTATGTTTCAAATGTA
* **
57525241 ACGTTTTAGTCACTTATGTTATCACGTTGTA
1 ACATTTTAGTCACTTATGTT-TCA-AATGTA
57525272 ACATTTTAGTCACT
1 ACATTTTAGTCACT
57525286 GAGCCGTTAG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
29 19 0.51
30 2 0.05
31 16 0.43
ACGTcount: A:0.26, C:0.15, G:0.14, T:0.46
Consensus pattern (29 bp):
ACATTTTAGTCACTTATGTTTCAAATGTA
Found at i:57525477 original size:15 final size:17
Alignment explanation
Indices: 57525445--57525478 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
57525435 TGGACTAGTT
57525445 AAAAATGAAAAACATAG
1 AAAAATGAAAAACATAG
57525462 AAAAAT-AAAAAC-TAG
1 AAAAATGAAAAACATAG
57525477 AA
1 AA
57525479 CACAATTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 6 0.35
17 6 0.35
ACGTcount: A:0.74, C:0.06, G:0.09, T:0.12
Consensus pattern (17 bp):
AAAAATGAAAAACATAG
Found at i:57527190 original size:17 final size:17
Alignment explanation
Indices: 57527168--57527200 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
57527158 ATGGATTATT
57527168 AAAAAT-TTATAAAAATA
1 AAAAATATTA-AAAAATA
57527185 AAAAATATTAAAAAAT
1 AAAAATATTAAAAAAT
57527201 TAGTTTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (17 bp):
AAAAATATTAAAAAATA
Found at i:57528053 original size:14 final size:14
Alignment explanation
Indices: 57528034--57528073 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
57528024 TTGATTGCCA
57528034 GTAAAATATTTTCC
1 GTAAAATATTTTCC
* *
57528048 GTAAAATAATTTCT
1 GTAAAATATTTTCC
*
57528062 GAAAAATATTTT
1 GTAAAATATTTT
57528074 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.42
Consensus pattern (14 bp):
GTAAAATATTTTCC
Found at i:57528082 original size:20 final size:20
Alignment explanation
Indices: 57528057--57528096 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
57528047 CGTAAAATAA
*
57528057 TTTCTGAAAAATATTTTACT
1 TTTCTGAAAAATAATTTACT
*
57528077 TTTCTGTAAAATAATTTACT
1 TTTCTGAAAAATAATTTACT
57528097 AGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.35, C:0.10, G:0.05, T:0.50
Consensus pattern (20 bp):
TTTCTGAAAAATAATTTACT
Found at i:57528086 original size:34 final size:35
Alignment explanation
Indices: 57528042--57528108 Score: 102
Period size: 34 Copynumber: 1.9 Consensus size: 35
57528032 CAGTAAAATA
57528042 TTTTCCGTAAAATAATTT-CT-GAAAAATATTTTAC
1 TTTTCCGTAAAATAATTTACTAG-AAAATATTTTAC
*
57528076 TTTTCTGTAAAATAATTTACTAGAAAATATTTT
1 TTTTCCGTAAAATAATTTACTAGAAAATATTTT
57528109 CTGCTGTTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
34 17 0.57
35 12 0.40
36 1 0.03
ACGTcount: A:0.39, C:0.09, G:0.06, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATAATTTACTAGAAAATATTTTAC
Found at i:57535449 original size:20 final size:20
Alignment explanation
Indices: 57535424--57535463 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
57535414 CGTAAAATGA
*
57535424 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
57535444 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
57535464 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:57535453 original size:34 final size:35
Alignment explanation
Indices: 57535409--57535475 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
57535399 CAGTAAAATA
*
57535409 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
57535443 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
57535476 CTGCTGCTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:57535560 original size:20 final size:19
Alignment explanation
Indices: 57535535--57535581 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
57535525 ACATATATTA
57535535 ATATATATTAATAAATTTTT
1 ATATATATTAAT-AATTTTT
* *
57535555 ATATAT-TAAATTATTTTT
1 ATATATATTAATAATTTTT
*
57535573 ACATATATT
1 ATATATATT
57535582 GCAATGATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
18 11 0.50
19 5 0.23
20 6 0.27
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (19 bp):
ATATATATTAATAATTTTT
Found at i:57544050 original size:42 final size:42
Alignment explanation
Indices: 57544002--57544244 Score: 206
Period size: 42 Copynumber: 5.8 Consensus size: 42
57543992 TCACGTGACA
* * *
57544002 TTCTATAGTACCGATCATCAGGTGAGTAAGAACGGTCCCGCC
1 TTCTATAGTATCGATCATCAGGAGAGTAAGAACGATCCCGCC
* *
57544044 TTCTATAGTATCGATCCTCAGGAGAGTAAGAACGATCCCGTC
1 TTCTATAGTATCGATCATCAGGAGAGTAAGAACGATCCCGCC
* * * * * *
57544086 TGC-AGTGGTAACGATCATCGGGAGAGTAA-AACCTATCACGCC
1 TTCTA-TAGTATCGATCATCAGGAGAGTAAGAA-CGATCCCGCC
* * *
57544128 TTCTATAGTATCTATCATCAGGAGAGTAAGAACGGTCCCGTC
1 TTCTATAGTATCGATCATCAGGAGAGTAAGAACGATCCCGCC
* * * * * * *
57544170 TAT-GATAATAACAATCATAAGGAGAGT-AGGACTGATCACGCC
1 T-TCTATAGTATCGATCATCAGGAGAGTAAGAAC-GATCCCGCC
* * *
57544212 TTCGATAGTATCGATCTTCAGGAGAGTAGGAAC
1 TTCTATAGTATCGATCATCAGGAGAGTAAGAAC
57544245 AGTAACGATA
Statistics
Matches: 155, Mismatches: 38, Indels: 15
0.75 0.18 0.07
Matches are distributed among these distances:
41 8 0.05
42 140 0.90
43 7 0.05
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.24
Consensus pattern (42 bp):
TTCTATAGTATCGATCATCAGGAGAGTAAGAACGATCCCGCC
Found at i:57544113 original size:84 final size:84
Alignment explanation
Indices: 57544013--57544244 Score: 256
Period size: 84 Copynumber: 2.8 Consensus size: 84
57544003 TCTATAGTAC
* * * *
57544013 CGATCATCAGGTGAGTAAGAACGGTCCCGCCTTCTATAGTATCGATCCTCAGGAGAGTAAGAACG
1 CGATCATCAGGAGAGTAAGAACGATCACGCCTTCTATAGTATCGATCATCAGGAGAGTAAGAACG
**
57544078 ATCCCGTC--TGCAGTGGTAA
66 ATCCCGTCTATG-A-TAATAA
* * *
57544097 CGATCATCGGGAGAGTAA-AACCTATCACGCCTTCTATAGTATCTATCATCAGGAGAGTAAGAAC
1 CGATCATCAGGAGAGTAAGAA-CGATCACGCCTTCTATAGTATCGATCATCAGGAGAGTAAGAAC
*
57544161 GGTCCCGTCTATGATAATAA
65 GATCCCGTCTATGATAATAA
* * * * * *
57544181 CAATCATAAGGAGAGT-AGGACTGATCACGCCTTCGATAGTATCGATCTTCAGGAGAGTAGGAAC
1 CGATCATCAGGAGAGTAAGAAC-GATCACGCCTTCTATAGTATCGATCATCAGGAGAGTAAGAAC
57544245 AGTAACGATA
Statistics
Matches: 124, Mismatches: 19, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
83 4 0.03
84 117 0.94
85 1 0.01
86 2 0.02
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.23
Consensus pattern (84 bp):
CGATCATCAGGAGAGTAAGAACGATCACGCCTTCTATAGTATCGATCATCAGGAGAGTAAGAACG
ATCCCGTCTATGATAATAA
Found at i:57548202 original size:20 final size:19
Alignment explanation
Indices: 57548173--57548233 Score: 81
Period size: 19 Copynumber: 3.3 Consensus size: 19
57548163 TTAACAAAAA
*
57548173 AAAAAATCAAAATCATTTTT
1 AAAAAATCAAAAT-ATTTAT
*
57548193 AAAAATTCAAAATATTTAT
1 AAAAAATCAAAATATTTAT
57548212 AAAAAATCAAAAT-TTTA-
1 AAAAAATCAAAATATTTAT
57548229 AAAAA
1 AAAAA
57548234 TATAAATAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
17 5 0.13
18 4 0.11
19 17 0.45
20 12 0.32
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAAAATCAAAATATTTAT
Found at i:57548242 original size:29 final size:30
Alignment explanation
Indices: 57548201--57548264 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 30
57548191 TTAAAAATTC
** *
57548201 AAAATATTTATAAAAAAT-CAAAATTTTAA
1 AAAATATAAATAAAAAATAAAAAATTTTAA
*
57548230 AAAATATAAATAAAAAATAAAAAATTTTAG
1 AAAATATAAATAAAAAATAAAAAATTTTAA
57548260 AAAAT
1 AAAAT
57548265 TTTCTAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 16 0.53
30 14 0.47
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (30 bp):
AAAATATAAATAAAAAATAAAAAATTTTAA
Found at i:57548593 original size:3 final size:3
Alignment explanation
Indices: 57548585--57548616 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
57548575 CTCACCCCTA
*
57548585 ATT ATT ATT ATT ATT ACT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
57548617 ATGTTAGTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:57551901 original size:20 final size:19
Alignment explanation
Indices: 57551857--57551901 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
57551847 AATTTGGTTC
57551857 CAATTAATTTCTTGAGTCT
1 CAATTAATTTCTTGAGTCT
*
57551876 -AGATTACATTTTTTGAGTCT
1 CA-ATTA-ATTTCTTGAGTCT
57551896 CAATTA
1 CAATTA
57551902 TTCCATATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
18 1 0.05
19 4 0.18
20 16 0.73
21 1 0.05
ACGTcount: A:0.29, C:0.13, G:0.11, T:0.47
Consensus pattern (19 bp):
CAATTAATTTCTTGAGTCT
Found at i:57561234 original size:17 final size:16
Alignment explanation
Indices: 57561212--57561269 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
57561202 AGAGTGGAAA
57561212 AAAATTTGGAAGGATGG
1 AAAA-TTGGAAGGATGG
* * *
57561229 AAAATTGAAAGGGTTG
1 AAAATTGGAAGGATGG
* *
57561245 AAAACTAGAAGGATGG
1 AAAATTGGAAGGATGG
57561261 AAAA-TGGAA
1 AAAATTGGAA
57561270 AGAAAAAGTA
Statistics
Matches: 32, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
15 4 0.12
16 24 0.75
17 4 0.12
ACGTcount: A:0.48, C:0.02, G:0.31, T:0.19
Consensus pattern (16 bp):
AAAATTGGAAGGATGG
Found at i:57570158 original size:15 final size:15
Alignment explanation
Indices: 57570139--57570170 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
57570129 ATGTGATAAT
57570139 TTTTTATGTTTTATTA
1 TTTTTAT-TTTTATTA
57570155 TTTTTATTTTTATTA
1 TTTTTATTTTTATTA
57570170 T
1 T
57570171 ATATTTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (15 bp):
TTTTTATTTTTATTA
Found at i:57575818 original size:30 final size:31
Alignment explanation
Indices: 57575762--57575824 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 31
57575752 GGCTCGGCCT
*
57575762 ATTCATCATAATTCATGCAATGTCAAAGAAC
1 ATTCATCATAATTCATGCAATATCAAAGAAC
57575793 ATTCATCATAATTCA-GCAATATCAAAGAAC
1 ATTCATCATAATTCATGCAATATCAAAGAAC
57575823 AT
1 AT
57575825 CTTCAACTGT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 16 0.52
31 15 0.48
ACGTcount: A:0.44, C:0.19, G:0.08, T:0.29
Consensus pattern (31 bp):
ATTCATCATAATTCATGCAATATCAAAGAAC
Found at i:57583722 original size:22 final size:22
Alignment explanation
Indices: 57583697--57583742 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
57583687 GAATTCAATG
* *
57583697 TTCACTTTGGTAATTGAGTTTT
1 TTCAATTTGATAATTGAGTTTT
*
57583719 TTCAATTTGATACTTGAGTTTT
1 TTCAATTTGATAATTGAGTTTT
57583741 TT
1 TT
57583743 TTTTTTGTCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.09, G:0.15, T:0.57
Consensus pattern (22 bp):
TTCAATTTGATAATTGAGTTTT
Found at i:57584517 original size:113 final size:113
Alignment explanation
Indices: 57584319--57584544 Score: 443
Period size: 113 Copynumber: 2.0 Consensus size: 113
57584309 TTTCAAAATT
*
57584319 TGGTAGCTTTCTCCAATTTGTTCTTTGAACTTATCTTGCGGTATTATAAGACATCGTAACTTGAA
1 TGGTAGCTTTCTCCAATTTGTTCTTTGAACTTATCTTCCGGTATTATAAGACATCGTAACTTGAA
57584384 TTTTTTTTACATTTTTAGATGATGACATGGCACAATTTCAGAATGTCA
66 TTTTTTTTACATTTTTAGATGATGACATGGCACAATTTCAGAATGTCA
57584432 TGGTAGCTTTCTCCAATTTGTTCTTTGAACTTATCTTCCGGTATTATAAGACATCGTAACTTGAA
1 TGGTAGCTTTCTCCAATTTGTTCTTTGAACTTATCTTCCGGTATTATAAGACATCGTAACTTGAA
57584497 TTTTTTTTACATTTTTAGATGATGACATGGCACAATTTCAGAATGTCA
66 TTTTTTTTACATTTTTAGATGATGACATGGCACAATTTCAGAATGTCA
57584545 CGTCATTTTA
Statistics
Matches: 112, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
113 112 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.42
Consensus pattern (113 bp):
TGGTAGCTTTCTCCAATTTGTTCTTTGAACTTATCTTCCGGTATTATAAGACATCGTAACTTGAA
TTTTTTTTACATTTTTAGATGATGACATGGCACAATTTCAGAATGTCA
Found at i:57585245 original size:25 final size:23
Alignment explanation
Indices: 57585217--57585263 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
57585207 ATTTTAAAAT
57585217 CTAAAAAAATAAAGAGACTAAATTC
1 CTAAAAAAAT-AA-AGACTAAATTC
**
57585242 CTAAAAGTATAAAGACTAAATT
1 CTAAAAAAATAAAGACTAAATT
57585264 TCAAAATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 10 0.50
24 2 0.10
25 8 0.40
ACGTcount: A:0.57, C:0.11, G:0.09, T:0.23
Consensus pattern (23 bp):
CTAAAAAAATAAAGACTAAATTC
Found at i:57586201 original size:7 final size:7
Alignment explanation
Indices: 57586184--57586216 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
57586174 ATTATTTAAA
57586184 ATATATTT
1 ATAT-TTT
57586192 ATATTTT
1 ATATTTT
57586199 ATATTTT
1 ATATTTT
57586206 ATATTTT
1 ATATTTT
57586213 ATAT
1 ATAT
57586217 ATAGCCATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 21 0.84
8 4 0.16
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (7 bp):
ATATTTT
Found at i:57586208 original size:14 final size:15
Alignment explanation
Indices: 57586184--57586218 Score: 63
Period size: 14 Copynumber: 2.4 Consensus size: 15
57586174 ATTATTTAAA
57586184 ATATATTTATATTTT
1 ATATATTTATATTTT
57586199 ATAT-TTTATATTTT
1 ATATATTTATATTTT
57586213 ATATAT
1 ATATAT
57586219 AGCCATATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 14 0.74
15 5 0.26
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
ATATATTTATATTTT
Found at i:57587399 original size:2 final size:2
Alignment explanation
Indices: 57587394--57587425 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
57587384 ACACACACAG
*
57587394 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
57587426 GAGAGAAACC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:57587895 original size:30 final size:31
Alignment explanation
Indices: 57587861--57587928 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
57587851 ACTTAACAGC
* *
57587861 CAATGGCTTAAATAAAAAC-TTCCGATAGTT
1 CAATGACTTAAATAAAAACTTTCCAATAGTT
* * *
57587891 CAATGATTTAAATGAAAACTTTCTAATAGTT
1 CAATGACTTAAATAAAAACTTTCCAATAGTT
57587922 CAATGAC
1 CAATGAC
57587929 CATTTTGTAA
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
30 16 0.52
31 15 0.48
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (31 bp):
CAATGACTTAAATAAAAACTTTCCAATAGTT
Found at i:57587923 original size:31 final size:30
Alignment explanation
Indices: 57587868--57587927 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 30
57587858 AGCCAATGGC
*
57587868 TTAAATAAAAACTTCCGATAGTTCAATGAT
1 TTAAATAAAAACTTCCAATAGTTCAATGAT
* *
57587898 TTAAATGAAAACTTTCTAATAGTTCAATGA
1 TTAAATAAAAAC-TTCCAATAGTTCAATGA
57587928 CCATTTTGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.35
Consensus pattern (30 bp):
TTAAATAAAAACTTCCAATAGTTCAATGAT
Found at i:57591073 original size:30 final size:30
Alignment explanation
Indices: 57591037--57591101 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
57591027 ACAAAAAAAC
57591037 CTCTCAAATTTCTCCCTAAATTTCTCAAAG
1 CTCTCAAATTTCTCCCTAAATTTCTCAAAG
*
57591067 CTCTCAAATTTCTCCTTAAATTTCTCAAAG
1 CTCTCAAATTTCTCCCTAAATTTCTCAAAG
57591097 CTCTC
1 CTCTC
57591102 TTTAATTAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.28, C:0.31, G:0.03, T:0.38
Consensus pattern (30 bp):
CTCTCAAATTTCTCCCTAAATTTCTCAAAG
Found at i:57591274 original size:10 final size:10
Alignment explanation
Indices: 57591259--57591285 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
57591249 GTTAATTTTA
57591259 ATTTTTTAAT
1 ATTTTTTAAT
57591269 ATTTTTTAAT
1 ATTTTTTAAT
57591279 ATTTTTT
1 ATTTTTT
57591286 TCTTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (10 bp):
ATTTTTTAAT
Found at i:57593363 original size:58 final size:59
Alignment explanation
Indices: 57593245--57593367 Score: 135
Period size: 58 Copynumber: 2.1 Consensus size: 59
57593235 ATATATTTGT
* * ****
57593245 GTAAACTTTTTTTATATTATTTCATTTAATAAAATAAAAGTTGTTTTTAATATTTTAATA
1 GTAAA-TTTTTTTATATTATTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGGCAATA
* *
57593305 GTAAATTATTTTTATGTT-TTT-ATTTAATAAAATATAAGTTCTTTTGAATAAGGCAATA
1 GTAAATT-TTTTTATATTATTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGGCAATA
57593363 G-AAAT
1 GTAAAT
57593368 AATGCAACAT
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
57 4 0.07
58 31 0.57
59 5 0.09
60 14 0.26
ACGTcount: A:0.39, C:0.03, G:0.08, T:0.50
Consensus pattern (59 bp):
GTAAATTTTTTTATATTATTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGGCAATA
Found at i:57598070 original size:44 final size:43
Alignment explanation
Indices: 57597971--57598085 Score: 126
Period size: 44 Copynumber: 2.7 Consensus size: 43
57597961 GGCTCGTACA
* * * *
57597971 ATGCCAACGTCCCAGACGTGGTTTTACATTTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACAGTAAATCACAAATCG
* *
57598014 ATACC-ACTGTCCCAGACAG-GGTCTTACACGTAAATCACAAATTG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACA-GTAAATCACAAATCG
*
57598058 ATGCCAACGTCCCAGACGTGATCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
57598086 TGATAACACA
Statistics
Matches: 59, Mismatches: 8, Indels: 9
0.78 0.11 0.12
Matches are distributed among these distances:
42 2 0.03
43 22 0.37
44 33 0.56
45 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACAGTAAATCACAAATCG
Found at i:57598534 original size:28 final size:25
Alignment explanation
Indices: 57598503--57598556 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 25
57598493 TTATATTTGT
57598503 TTTATTATAATAACTTTATAATATATTA
1 TTTATTAT-A-AACTTTATAAT-TATTA
*
57598531 TTTATTATAACCTTTATAATTATTA
1 TTTATTATAAACTTTATAATTATTA
57598556 T
1 T
57598557 AAAAACTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 6 0.24
26 10 0.40
27 1 0.04
28 8 0.32
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (25 bp):
TTTATTATAAACTTTATAATTATTA
Found at i:57598535 original size:25 final size:25
Alignment explanation
Indices: 57598507--57598556 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
57598497 ATTTGTTTTA
57598507 TTATAATAA-CTTTATAATATATTAT
1 TTATAATAACCTTTATAAT-TATTAT
*
57598532 TTATTATAACCTTTATAATTATTAT
1 TTATAATAACCTTTATAATTATTAT
57598557 AAAAACTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (25 bp):
TTATAATAACCTTTATAATTATTAT
Found at i:57599419 original size:124 final size:125
Alignment explanation
Indices: 57599196--57599467 Score: 397
Period size: 124 Copynumber: 2.2 Consensus size: 125
57599186 TAAGGCCAAA
57599196 CAGGAACTACTGTA-AAAAAAGAGCATCCACGTGGAAGCTTTTTTCATCAATTTTGCTGACAATG
1 CAGGAACTACTGTAGAAAAAA-AGCATCCACGTGGAAGCTTTTTTCATCAA-TTTGCTGACAATG
*
57599260 CATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAACCGTCTTATCAAAATTATTTTTT
64 CATCCTGCTTGAAGCATTTTTGACACTATTTGTTCAGAACCGTCTTATCAAAATTATTTTTT
* * ** * * *
57599322 TAGGAACTACTGTAGAAAAAAAGCGTTTACGT-GAGAGCTTTTTTCATTAA-TTGCTGACAGTGT
1 CAGGAACTACTGTAGAAAAAAAGCATCCACGTGGA-AGCTTTTTTCATCAATTTGCTGACAATGC
* *
57599385 ATCCTGCTTGAAGCATTTTTGACACTATTTGTTCAGAACTGTCTTCTCAAAATTATTTTTT
65 ATCCTGCTTGAAGCATTTTTGACACTATTTGTTCAGAACCGTCTTATCAAAATTATTTTTT
*
57599446 CAGGAATTACTGTAGAAAAAAA
1 CAGGAACTACTGTAGAAAAAAA
57599468 AATCCTTATT
Statistics
Matches: 132, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
124 89 0.67
125 2 0.02
126 35 0.27
127 6 0.05
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.36
Consensus pattern (125 bp):
CAGGAACTACTGTAGAAAAAAAGCATCCACGTGGAAGCTTTTTTCATCAATTTGCTGACAATGCA
TCCTGCTTGAAGCATTTTTGACACTATTTGTTCAGAACCGTCTTATCAAAATTATTTTTT
Found at i:57599611 original size:34 final size:34
Alignment explanation
Indices: 57599542--57599730 Score: 132
Period size: 34 Copynumber: 5.5 Consensus size: 34
57599532 AAAAAAAGCT
* * * *
57599542 AAACCTAATTTAACTAATTTTTTTGAAAACTCTA
1 AAACCTAATTTAATTAATTTATTTAAAAACCCTA
* * *
57599576 AACCCTAAGTTAATTAATTTATTTAAAACCCCTA
1 AAACCTAATTTAATTAATTTATTTAAAAACCCTA
** ** * ***
57599610 AAACCTAAACCTAAACACAAAGTTA-TTAAAAAAAATA
1 AAACCT-AA--TTTA-ATTAATTTATTTAAAAACCCTA
*
57599647 AAACCTAATTTAATTAATTT-TATTAAAAACTCTA
1 AAACCTAATTTAATTAATTTAT-TTAAAAACCCTA
* **
57599681 AACCCTAAGCTAATTAATTTA-TTAAAAACCCCTA
1 AAACCTAATTTAATTAATTTATTTAAAAA-CCCTA
57599715 AAACCTAATTTAATTA
1 AAACCTAATTTAATTA
57599731 TTAAAAAAAT
Statistics
Matches: 114, Mismatches: 33, Indels: 16
0.70 0.20 0.10
Matches are distributed among these distances:
33 12 0.11
34 77 0.68
35 2 0.02
36 2 0.02
37 15 0.13
38 6 0.05
ACGTcount: A:0.48, C:0.17, G:0.02, T:0.33
Consensus pattern (34 bp):
AAACCTAATTTAATTAATTTATTTAAAAACCCTA
Found at i:57599659 original size:105 final size:106
Alignment explanation
Indices: 57599499--57599722 Score: 339
Period size: 105 Copynumber: 2.1 Consensus size: 106
57599489 TTTCCCTAAA
*
57599499 CCCT-AAACCTAGACCTAAACACAACATTATTTAAAAAAAAGCTAAACCTAATTTAACTAATTTT
1 CCCTAAAACCTAAACCTAAACACAACATTATTTAAAAAAAA-CTAAACCTAATTTAACTAATTTT
* * * *
57599563 TTTGAAAACTCTAAACCCTAAGTTAATTAATTTATTTAAAAC
65 ATTAAAAACTCTAAACCCTAAGCTAATTAATTTATTAAAAAC
*
57599605 CCCTAAAACCTAAACCTAAACACAA-AGTTA-TTAAAAAAAA-TAAAACCTAATTTAATTAATTT
1 CCCTAAAACCTAAACCTAAACACAACA-TTATTTAAAAAAAACT-AAACCTAATTTAACTAATTT
57599667 TATTAAAAACTCTAAACCCTAAGCTAATTAATTTATTAAAAAC
64 TATTAAAAACTCTAAACCCTAAGCTAATTAATTTATTAAAAAC
57599710 CCCTAAAACCTAA
1 CCCTAAAACCTAA
57599723 TTTAATTATT
Statistics
Matches: 109, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
104 1 0.01
105 71 0.65
106 15 0.14
107 22 0.20
ACGTcount: A:0.48, C:0.19, G:0.03, T:0.30
Consensus pattern (106 bp):
CCCTAAAACCTAAACCTAAACACAACATTATTTAAAAAAAACTAAACCTAATTTAACTAATTTTA
TTAAAAACTCTAAACCCTAAGCTAATTAATTTATTAAAAAC
Found at i:57599695 original size:30 final size:29
Alignment explanation
Indices: 57599657--57599780 Score: 99
Period size: 28 Copynumber: 4.1 Consensus size: 29
57599647 AAACCTAATT
*
57599657 TAATTAATTTTATTAAAAACTCTAAACCC
1 TAATTAATTTTATTAAAAACCCTAAACCC
* *
57599686 TAAGCTAATTAATTTATTAAAAACCCCTAAAACC
1 TAA-TTAA-T--TTTATTAAAAA-CCCTAAACCC
* **
57599720 TAATTTAATTATTA-AAAAAATACTAAACCC
1 TAA-TTAATT-TTATTAAAAACCCTAAACCC
* *
57599750 TAATTTATTTT-TTAAAATCCCTAAACCC
1 TAATTAATTTTATTAAAAACCCTAAACCC
57599778 TAA
1 TAA
57599781 ACCTAAATTA
Statistics
Matches: 74, Mismatches: 14, Indels: 15
0.72 0.14 0.15
Matches are distributed among these distances:
28 17 0.23
29 8 0.11
30 13 0.18
31 7 0.09
32 3 0.04
33 12 0.16
34 14 0.19
ACGTcount: A:0.46, C:0.18, G:0.01, T:0.35
Consensus pattern (29 bp):
TAATTAATTTTATTAAAAACCCTAAACCC
Found at i:57602242 original size:130 final size:132
Alignment explanation
Indices: 57601879--57602266 Score: 430
Period size: 141 Copynumber: 2.9 Consensus size: 132
57601869 GTTATGCGTT
* * * *
57601879 GTTTGAATAATACACTGTTGTGGTTTACATAATTGGGATGATGGTAGCTGCAGAATGGATAATAA
1 GTTTGAATAATATACTGTTGTGGTTAACATAATTGGGATGATGGTAGCTGCAGAATGGATATTGA
* ** * * *
57601944 TTTGGGTTTTGATCCCAAGTCACTGATTTACCATATATTTTTATTACATACACATACATGCATGC
66 TTTGGGGTTTGAT-CCAAGTCACTGATTTACCAT-T-TTTTT-TT-TGT-TATATACATG-ATAC
57602009 ATACATACATA
124 ATA-ATACA-A
* * *
57602020 GTTTGAATAATATACCGTTGTGG-TATACGTAATTGGGATGAGGGTAGCTGCAGAATGGATATTG
1 GTTTGAATAATATACTGTTGTGGTTA-ACATAATTGGGATGATGGTAGCTGCAGAATGGATATTG
57602084 ATTT-GGGTCTTGATTCCAAGTCACTGATTTACC-TTTTTTTTTTGTTATATACATG-TACAT-A
65 ATTTGGGGT-TTGA-TCCAAGTCACTGATTTACCATTTTTTTTTTGTTATATACATGATACATAA
57602145 TAC-A
128 TACAA
* *
57602149 GTTTGAATAATATACTTTTGTGGGTTAACAT-ATCTGGGATGATGGTAGCTGCAGAATGGACATT
1 GTTTGAATAATATACTGTTGT-GGTTAACATAAT-TGGGATGATGGTAGCTGCAGAATGGATATT
* * *
57602213 GGTTTGGGGTTTGAGTCCAAGTCACTGATTCACCATTTTTTTCTTGTTATATAC
64 GATTTGGGGTTTGA-TCCAAGTCACTGATTTACCATTTTTTTTTTGTTATATAC
57602267 GTATATGTGT
Statistics
Matches: 217, Mismatches: 22, Indels: 26
0.82 0.08 0.10
Matches are distributed among these distances:
129 22 0.10
130 59 0.27
131 28 0.13
133 4 0.02
135 8 0.04
136 1 0.00
137 2 0.01
138 5 0.02
139 1 0.00
140 5 0.02
141 81 0.37
142 1 0.00
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.39
Consensus pattern (132 bp):
GTTTGAATAATATACTGTTGTGGTTAACATAATTGGGATGATGGTAGCTGCAGAATGGATATTGA
TTTGGGGTTTGATCCAAGTCACTGATTTACCATTTTTTTTTTGTTATATACATGATACATAATAC
AA
Found at i:57609727 original size:31 final size:29
Alignment explanation
Indices: 57609670--57609727 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 29
57609660 ATAAATTTAA
*
57609670 AATTTAGTCTCTATATTTTTATTTTTAGG
1 AATTTAGTCTCTATATTTTTAATTTTAGG
57609699 AATTTAGTCACTCTA-ATTTTTAGATTTTA
1 AATTTAGT--CTCTATATTTTTA-ATTTTA
57609728 AAATTTAAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 8 0.32
30 7 0.28
31 10 0.40
ACGTcount: A:0.28, C:0.09, G:0.09, T:0.55
Consensus pattern (29 bp):
AATTTAGTCTCTATATTTTTAATTTTAGG
Found at i:57609733 original size:30 final size:28
Alignment explanation
Indices: 57609665--57609734 Score: 79
Period size: 30 Copynumber: 2.4 Consensus size: 28
57609655 TCTTTATAAA
*
57609665 TTTAAAATTTAGTCTCTATATTTTTATT
1 TTTAAAATTTAGTCTCTATATTTTTAAT
*
57609693 TTTAGGAATTTAGTCACTCTA-ATTTTTAGAT
1 TTTA-AAATTTAGT--CTCTATATTTTTA-AT
57609724 TTTAAAATTTA
1 TTTAAAATTTA
57609735 AGCCCAATTG
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
28 4 0.11
29 8 0.23
30 13 0.37
31 10 0.29
ACGTcount: A:0.31, C:0.07, G:0.07, T:0.54
Consensus pattern (28 bp):
TTTAAAATTTAGTCTCTATATTTTTAAT
Found at i:57611006 original size:31 final size:31
Alignment explanation
Indices: 57610965--57611037 Score: 119
Period size: 31 Copynumber: 2.4 Consensus size: 31
57610955 AACTTTTCGA
*
57610965 AATTGAGTGACCAAAACGTAAACTTACTAAT
1 AATTTAGTGACCAAAACGTAAACTTACTAAT
* *
57610996 AATTTTGTGACCAAAATGTAAACTTACTAAT
1 AATTTAGTGACCAAAACGTAAACTTACTAAT
57611027 AATTTAGTGAC
1 AATTTAGTGAC
57611038 ATTAGGTGCA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.42, C:0.14, G:0.12, T:0.32
Consensus pattern (31 bp):
AATTTAGTGACCAAAACGTAAACTTACTAAT
Found at i:57612547 original size:31 final size:31
Alignment explanation
Indices: 57612506--57612564 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
57612496 GTCATTGAAC
*
57612506 TATTCGAAAGTT-TTCATTTAAGTCACCAAAA
1 TATTCAAAAGTTCTT-ATTTAAGTCACCAAAA
57612537 TATTCAAAAGTTCTTATTTAAGTCACCA
1 TATTCAAAAGTTCTTATTTAAGTCACCA
57612565 GACTGTTAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 24 0.92
32 2 0.08
ACGTcount: A:0.37, C:0.17, G:0.08, T:0.37
Consensus pattern (31 bp):
TATTCAAAAGTTCTTATTTAAGTCACCAAAA
Found at i:57615184 original size:21 final size:21
Alignment explanation
Indices: 57615160--57615206 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
57615150 CTTATGGCAT
*
57615160 ATTTTAACCTTTATTTATTT-A
1 ATTTTAACCTTGATTT-TTTGA
*
57615181 ATTTAAACCTTGATTTTTTGA
1 ATTTTAACCTTGATTTTTTGA
57615202 ATTTT
1 ATTTT
57615207 GCCCCAAACT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 3 0.14
21 19 0.86
ACGTcount: A:0.28, C:0.09, G:0.04, T:0.60
Consensus pattern (21 bp):
ATTTTAACCTTGATTTTTTGA
Found at i:57620902 original size:31 final size:31
Alignment explanation
Indices: 57620844--57620904 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
57620834 TTATTAGGCC
*
57620844 AGTGACTTAAATAAAAACTTTTGAATAGTTT
1 AGTGACTTAAATAAAAACTTTTAAATAGTTT
* *
57620875 AGTGACTTAAATGAAGA-TTTTCAAATAGTT
1 AGTGACTTAAATAAAAACTTTT-AAATAGTT
57620905 CAATGACCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 4 0.15
31 22 0.85
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.38
Consensus pattern (31 bp):
AGTGACTTAAATAAAAACTTTTAAATAGTTT
Found at i:57623370 original size:2 final size:2
Alignment explanation
Indices: 57623328--57623352 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
57623318 ATCTCTTCCC
57623328 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
57623353 ATGATCTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:57625052 original size:18 final size:17
Alignment explanation
Indices: 57625021--57625054 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
57625011 TAATTTTACC
57625021 ATTTTAATAATTTATAT
1 ATTTTAATAATTTATAT
*
57625038 ATTTTTATAACTTTATA
1 ATTTTAATAA-TTTATA
57625055 GGATTAAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTAATAATTTATAT
Found at i:57625859 original size:20 final size:20
Alignment explanation
Indices: 57625830--57625867 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
57625820 GTTAAAAAAA
*
57625830 TAGAGGGACTAATTTAATAG
1 TAGAGAGACTAATTTAATAG
57625850 TAGAGAGACTAATTTAAT
1 TAGAGAGACTAATTTAAT
57625868 CATGTTCCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.05, G:0.21, T:0.32
Consensus pattern (20 bp):
TAGAGAGACTAATTTAATAG
Found at i:57627562 original size:22 final size:23
Alignment explanation
Indices: 57627519--57627562 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
57627509 TTGTCACATT
* * *
57627519 GACATAAAAACAAACACGTTGAA
1 GACAAAAAAAAAAAAACGTTGAA
57627542 GACAAAAAAAAAAAAAC-TTGA
1 GACAAAAAAAAAAAAACGTTGA
57627563 GTTTGAGTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.64, C:0.14, G:0.11, T:0.11
Consensus pattern (23 bp):
GACAAAAAAAAAAAAACGTTGAA
Found at i:57627727 original size:19 final size:20
Alignment explanation
Indices: 57627692--57627733 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 20
57627682 AAATATAAAA
57627692 TTTGAATTTTTATAAA-TAT
1 TTTGAATTTTTATAAATTAT
57627711 TTTGAATTTTTGA-AAATTAT
1 TTTGAATTTTT-ATAAATTAT
57627731 TTT
1 TTT
57627734 AAAATATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (20 bp):
TTTGAATTTTTATAAATTAT
Found at i:57627733 original size:20 final size:19
Alignment explanation
Indices: 57627636--57627721 Score: 64
Period size: 20 Copynumber: 4.2 Consensus size: 19
57627626 AAAATTTAAC
*
57627636 TTTTATATATATTTTAGAAT
1 TTTTATAAATATTTT-GAAT
* * * *
57627656 TTTTAGAATTTTTTATGATT
1 TTTTATAAATATTT-TGAAT
*
57627676 TTTTAAAAATATAAAATTTGAAT
1 TTTTATAAATAT----TTTGAAT
57627699 TTTTATAAATATTTTGAAT
1 TTTTATAAATATTTTGAAT
57627718 TTTT
1 TTTT
57627722 GAAAATTATT
Statistics
Matches: 51, Mismatches: 10, Indels: 11
0.71 0.14 0.15
Matches are distributed among these distances:
19 11 0.22
20 22 0.43
21 1 0.02
23 15 0.29
24 2 0.04
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (19 bp):
TTTTATAAATATTTTGAAT
Found at i:57629099 original size:6 final size:6
Alignment explanation
Indices: 57629088--57629121 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
57629078 AATATGAAAT
57629088 AAATCC AAATCC AAATCC AAATCC AAATCC AAAT
1 AAATCC AAATCC AAATCC AAATCC AAATCC AAAT
57629122 AGGAATAGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.53, C:0.29, G:0.00, T:0.18
Consensus pattern (6 bp):
AAATCC
Found at i:57629128 original size:6 final size:6
Alignment explanation
Indices: 57629119--57629143 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
57629109 TCCAAATCCA
57629119 AATAGG AATAGG AATAGG AATAGG A
1 AATAGG AATAGG AATAGG AATAGG A
57629144 TGATTGAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.32, T:0.16
Consensus pattern (6 bp):
AATAGG
Found at i:57629237 original size:6 final size:6
Alignment explanation
Indices: 57629228--57629261 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
57629218 TCCTATTCCT
57629228 ATTTGG ATTTGG ATTTGG ATTTGG ATTTGG ATTT
1 ATTTGG ATTTGG ATTTGG ATTTGG ATTTGG ATTT
57629262 ATTTCATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.29, T:0.53
Consensus pattern (6 bp):
ATTTGG
Found at i:57631173 original size:20 final size:20
Alignment explanation
Indices: 57631150--57631245 Score: 73
Period size: 19 Copynumber: 5.2 Consensus size: 20
57631140 TAAATTTTAT
57631150 AATTCAAAAAATTTATAAAA
1 AATTCAAAAAATTTATAAAA
57631170 AATTC--AAAATTTAT----
1 AATTCAAAAAATTTATAAAA
* *
57631184 ATTTTAAAAAATTTATAAAA
1 AATTCAAAAAATTTATAAAA
* * *
57631204 ATTTCTAAAAATATAT-AAA
1 AATTCAAAAAATTTATAAAA
**
57631223 AATTTTAAAAATTT-TAAAA
1 AATTCAAAAAATTTATAAAA
57631242 AATT
1 AATT
57631246 TCTAAAATAA
Statistics
Matches: 61, Mismatches: 8, Indels: 15
0.73 0.10 0.18
Matches are distributed among these distances:
14 3 0.05
16 9 0.15
18 10 0.16
19 21 0.34
20 18 0.30
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (20 bp):
AATTCAAAAAATTTATAAAA
Found at i:57631193 original size:34 final size:35
Alignment explanation
Indices: 57631140--57631253 Score: 106
Period size: 34 Copynumber: 3.2 Consensus size: 35
57631130 TAAAATAAAA
*
57631140 TAAATTTTATAATTCAAAAAATTTATAAAAAATTC
1 TAAAATTTATAATTCAAAAAATTTATAAAAAATTC
* * *
57631175 -AAAATTTATATTTTAAAAAATTTATAAAAATTTC
1 TAAAATTTATAATTCAAAAAATTTATAAAAAATTC
* **
57631209 TAAAAATATATAAAAATTTTAAAAATTT-TAAAAAATTTC
1 T-AAAAT-T-T-ATAATTCAAAAAATTTATAAAAAA-TTC
57631248 TAAAAT
1 TAAAAT
57631254 AATAATTATG
Statistics
Matches: 65, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
34 30 0.46
36 5 0.08
37 1 0.02
38 12 0.18
39 17 0.26
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (35 bp):
TAAAATTTATAATTCAAAAAATTTATAAAAAATTC
Found at i:57631203 original size:10 final size:10
Alignment explanation
Indices: 57631186--57631252 Score: 77
Period size: 10 Copynumber: 6.9 Consensus size: 10
57631176 AAATTTATAT
57631186 TTTA-AAAAA
1 TTTATAAAAA
57631195 TTTATAAAAA
1 TTTATAAAAA
*
57631205 TTTCTAAAAA
1 TTTATAAAAA
*
57631215 TATATAAAAA
1 TTTATAAAAA
57631225 TTT-TAAAAA
1 TTTATAAAAA
57631234 TTT-TAAAAAA
1 TTTAT-AAAAA
*
57631244 TTTCTAAAA
1 TTTATAAAA
57631253 TAATAATTAT
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
9 14 0.27
10 36 0.71
11 1 0.02
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (10 bp):
TTTATAAAAA
Found at i:57631251 original size:20 final size:19
Alignment explanation
Indices: 57631156--57631252 Score: 89
Period size: 20 Copynumber: 5.2 Consensus size: 19
57631146 TTATAATTCA
*
57631156 AAAAATTTATAAAAA-ATT
1 AAAAATTTATAAAAATTTT
*
57631174 CAAAATTTAT----ATTTT
1 AAAAATTTATAAAAATTTT
57631189 AAAAAATTTATAAAAATTTCT
1 -AAAAATTTATAAAAATTT-T
*
57631210 AAAAATATATAAAAATTTT
1 AAAAATTTATAAAAATTTT
57631229 AAAAATTT-TAAAAAATTTCT
1 AAAAATTTAT-AAAAATTT-T
57631249 AAAA
1 AAAA
57631253 TAATAATTAT
Statistics
Matches: 65, Mismatches: 5, Indels: 16
0.76 0.06 0.19
Matches are distributed among these distances:
14 1 0.02
15 2 0.03
16 9 0.14
18 10 0.15
19 16 0.25
20 26 0.40
21 1 0.02
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAAATTTATAAAAATTTT
Found at i:57631345 original size:16 final size:16
Alignment explanation
Indices: 57631326--57631356 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
57631316 TTTGAAAATT
57631326 TTTCAAATATATATGG
1 TTTCAAATATATATGG
*
57631342 TTTCAAATTTATATG
1 TTTCAAATATATATG
57631357 CTCTAACATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATATGG
Found at i:57634201 original size:27 final size:29
Alignment explanation
Indices: 57634151--57634206 Score: 80
Period size: 27 Copynumber: 2.0 Consensus size: 29
57634141 GGCCTATTTT
* *
57634151 TTAATAAATATAAAAAATTTATTTTAAAA
1 TTAAAAAATATAAAAAATGTATTTTAAAA
57634180 TTAAAAAAT-TAAAAAA-GTATTTTAAAA
1 TTAAAAAATATAAAAAATGTATTTTAAAA
57634207 ATATTTTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 10 0.40
28 7 0.28
29 8 0.32
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (29 bp):
TTAAAAAATATAAAAAATGTATTTTAAAA
Found at i:57634236 original size:39 final size:39
Alignment explanation
Indices: 57634170--57634271 Score: 181
Period size: 39 Copynumber: 2.7 Consensus size: 39
57634160 ATAAAAAATT
57634170 TATTTTAAAATTAAAAAATT-AAAAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAATTAAAAAAAGTATTTTAAAAA
*
57634208 TATTTTAAAATTAAAAAATTAAAAAAAGTATTTTAAAAG
1 TATTTTAAAATTAAAAAATTAAAAAAAGTATTTTAAAAA
57634247 TATTTTAAAATTAAAAAA-TAAAAAA
1 TATTTTAAAATTAAAAAATTAAAAAA
57634272 TAAAAATATT
Statistics
Matches: 62, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
38 27 0.44
39 35 0.56
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (39 bp):
TATTTTAAAATTAAAAAATTAAAAAAAGTATTTTAAAAA
Found at i:57634245 original size:11 final size:11
Alignment explanation
Indices: 57634231--57634256 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
57634221 AAAAATTAAA
57634231 AAAAGTATTTT
1 AAAAGTATTTT
57634242 AAAAGTATTTT
1 AAAAGTATTTT
57634253 AAAA
1 AAAA
57634257 TTAAAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:57635045 original size:6 final size:6
Alignment explanation
Indices: 57635036--57635060 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
57635026 TCCAAATCCA
57635036 AATAGG AATAGG AATAGG AATAGG A
1 AATAGG AATAGG AATAGG AATAGG A
57635061 TGATTGAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.32, T:0.16
Consensus pattern (6 bp):
AATAGG
Found at i:57635168 original size:6 final size:6
Alignment explanation
Indices: 57635159--57635186 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
57635149 TCCTATTCCT
57635159 ATTTGG ATTTGG ATTTGG ATTTGG ATTT
1 ATTTGG ATTTGG ATTTGG ATTTGG ATTT
57635187 ATTTCATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.29, T:0.54
Consensus pattern (6 bp):
ATTTGG
Found at i:57636613 original size:25 final size:24
Alignment explanation
Indices: 57636562--57636619 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
57636552 AAAATTCAAA
*
57636562 ATATTTATAAAAAATTTAAAATTT
1 ATATTTATAAAAAATTTAAAATAT
* *
57636586 ATATTTTTAAAAAATTCTAATATAT
1 ATATTTATAAAAAATT-TAAAATAT
*
57636611 ATATATATA
1 ATATTTATA
57636620 TAAGTTAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 15 0.54
25 13 0.46
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (24 bp):
ATATTTATAAAAAATTTAAAATAT
Found at i:57637138 original size:34 final size:35
Alignment explanation
Indices: 57637100--57637195 Score: 97
Period size: 34 Copynumber: 2.7 Consensus size: 35
57637090 AATAATAATT
57637100 TTTATAAATAAAAAAAATTATAAAAAATTC-AAAA
1 TTTATAAATAAAAAAAATTATAAAAAATTCAAAAA
** * * *
57637134 TTTATATTTTAAAAAATTTATAAAAATTTCTAAAAA
1 TTTATAAATAAAAAAAATTATAAAAAATTC-AAAAA
* *
57637170 TATATAAA-AAAATAAAATTTTAAAAA
1 TTTATAAATAAAA-AAAATTATAAAAA
57637196 TTTTCTAAAA
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
34 25 0.52
35 3 0.06
36 20 0.42
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (35 bp):
TTTATAAATAAAAAAAATTATAAAAAATTCAAAAA
Found at i:57637158 original size:10 final size:10
Alignment explanation
Indices: 57637141--57637198 Score: 54
Period size: 10 Copynumber: 6.3 Consensus size: 10
57637131 AAATTTATAT
57637141 TTTA-AAAAA
1 TTTATAAAAA
57637150 TTTATAAAAA
1 TTTATAAAAA
*
57637160 TTTCTAAAAA
1 TTTATAAAAA
*
57637170 TATATAAAAA
1 TTTATAAAAA
*
57637180 --AAT-AAAA
1 TTTATAAAAA
57637187 TTT-TAAAAA
1 TTTATAAAAA
57637196 TTT
1 TTT
57637199 TCTAAAATAA
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
7 4 0.10
8 3 0.08
9 11 0.28
10 22 0.55
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (10 bp):
TTTATAAAAA
Found at i:57637962 original size:2 final size:2
Alignment explanation
Indices: 57637955--57637979 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
57637945 ATTAATTTAT
57637955 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
57637980 TTAAAAAGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:57639990 original size:7 final size:7
Alignment explanation
Indices: 57639978--57640007 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
57639968 ACATTTGTGT
*
57639978 TGGCTCG
1 TGGCTCA
57639985 TGGCTCA
1 TGGCTCA
57639992 TGGCTCA
1 TGGCTCA
57639999 TGGCTCA
1 TGGCTCA
57640006 TG
1 TG
57640008 TTGTTTTGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.10, C:0.27, G:0.33, T:0.30
Consensus pattern (7 bp):
TGGCTCA
Found at i:57644361 original size:29 final size:30
Alignment explanation
Indices: 57644297--57644361 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 30
57644287 TAGCCCCCGA
* *
57644297 ATTTTTCAAAAATTACATTTTGACCTCTAGT
1 ATTTTTCAAAAATTACA-TTTGACCCCTAAT
* * *
57644328 TTTTTTCTAAATTTACA-TTGACCCCTAAT
1 ATTTTTCAAAAATTACATTTGACCCCTAAT
57644357 ATTTT
1 ATTTT
57644362 GTAAACTACA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
29 14 0.50
31 14 0.50
ACGTcount: A:0.29, C:0.17, G:0.05, T:0.49
Consensus pattern (30 bp):
ATTTTTCAAAAATTACATTTGACCCCTAAT
Found at i:57645179 original size:22 final size:22
Alignment explanation
Indices: 57645130--57645180 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
57645120 TATTGCATAT
* *
57645130 TTTTAAGTATTTTTTTATTTTG
1 TTTTATGTATTTTTTTATTTTA
57645152 TATTTATGT-TTTTTTTAATTTTA
1 T-TTTATGTATTTTTTT-ATTTTA
57645175 TTTTAT
1 TTTTAT
57645181 TTTATTCGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
22 13 0.52
23 12 0.48
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.75
Consensus pattern (22 bp):
TTTTATGTATTTTTTTATTTTA
Found at i:57645640 original size:19 final size:19
Alignment explanation
Indices: 57645616--57645653 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
57645606 TTTCAAGTTT
**
57645616 TCGTGTTTTCAAAAATTTC
1 TCGTGTTTAAAAAAATTTC
57645635 TCGTGTTTAAAAAAATTTC
1 TCGTGTTTAAAAAAATTTC
57645654 GACTTTTCGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.45
Consensus pattern (19 bp):
TCGTGTTTAAAAAAATTTC
Found at i:57645690 original size:18 final size:18
Alignment explanation
Indices: 57645664--57645712 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
57645654 GACTTTTCGC
*
57645664 TTTTCCAAAATTTTTCATG
1 TTTT-CAAAATTTGTCATG
* *
57645683 TTTTCAAAACTTGTCGTG
1 TTTTCAAAATTTGTCATG
57645701 TTTTCAACAATT
1 TTTTCAA-AATT
57645713 CTCGCATTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
18 18 0.72
19 7 0.28
ACGTcount: A:0.27, C:0.16, G:0.08, T:0.49
Consensus pattern (18 bp):
TTTTCAAAATTTGTCATG
Found at i:57645794 original size:17 final size:16
Alignment explanation
Indices: 57645767--57646053 Score: 171
Period size: 17 Copynumber: 16.2 Consensus size: 16
57645757 TTGTCTTAAA
*
57645767 AAAAATCTCGTGTTTC
1 AAAAATTTCGTGTTTC
57645783 AAAAATTGTCGTGTTTC
1 AAAAATT-TCGTGTTTC
* *
57645800 AGAAATTTTCGTATTTTC
1 A-AAAATTTCGT-GTTTC
57645818 TAAAAATTTCCGTGTTTC
1 -AAAAATTT-CGTGTTTC
* *
57645836 AAAAATTTTCATGGTTTA
1 AAAAA-TTTCGT-GTTTC
*
57645854 AAAAATTGTCGTGTTTT
1 AAAAATT-TCGTGTTTC
*
57645871 AAAAATTTTCGTATTTC
1 AAAAA-TTTCGTGTTTC
57645888 AAAAAAAAATTTCTGTGTTTC
1 ----AAAAATTTC-GTGTTTC
*
57645909 AAAAATTTCCGTGTTTTTA
1 AAAAATTT-CGTG--TTTC
**
57645928 AAAAATTTCCGTGTTAAA
1 AAAAATTT-CGTGTT-TC
*
57645946 AAAAATCTCGTGTTTTC
1 AAAAATTTCGTG-TTTC
57645963 AAAAACTTTCGTGTTGT-
1 AAAAA-TTTCGTGTT-TC
* *
57645980 AGAAATTTTTGTGTTTC
1 A-AAAATTTCGTGTTTC
* *
57645997 TAAAATTCTCGTATTTC
1 AAAAATT-TCGTGTTTC
57646014 AAAAATTTCCGTGTTCTC
1 AAAAATTT-CGTGTT-TC
*
57646032 AAAAAGTTATTGTGTTTC
1 AAAAA-TT-TCGTGTTTC
57646050 AAAA
1 AAAA
57646054 TTCTCGCGTT
Statistics
Matches: 216, Mismatches: 27, Indels: 54
0.73 0.09 0.18
Matches are distributed among these distances:
16 13 0.06
17 90 0.42
18 70 0.32
19 27 0.12
20 5 0.02
21 11 0.05
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (16 bp):
AAAAATTTCGTGTTTC
Found at i:57645832 original size:36 final size:35
Alignment explanation
Indices: 57645774--57646070 Score: 195
Period size: 35 Copynumber: 8.4 Consensus size: 35
57645764 AAAAAAAATC
*
57645774 TCGTG-TTTC-AAAAATTGTCGTGTTTCAGAAATTT
1 TCGTGTTTTCTAAAAATT-TCGTGTTTCAAAAATTT
*
57645808 TCGTATTTTCTAAAAATTTCCGTGTTTCAAAAATTT
1 TCGTGTTTTCTAAAAATTT-CGTGTTTCAAAAATTT
* * * *
57645844 TCATGGTTT-AAAAAATTGTCGTGTTTTAAAAATTT
1 TCGTGTTTTCTAAAAATT-TCGTGTTTCAAAAATTT
* *
57645879 TCGT-ATTTCAAAAAAAAATTTCTGTGTTTCAAAAATTT
1 TCGTGTTTTC---TAAAAATTTC-GTGTTTCAAAAATTT
* ** * *
57645917 CCGTGTTTT-TAAAAAATTTCCGTGTTAAAAAAAATC
1 TCGTGTTTTCT-AAAAATTT-CGTGTTTCAAAAATTT
*
57645953 TCGTGTTTTC-AAAAACTTTCGTGTTGT-AGAAATTT
1 TCGTGTTTTCTAAAAA-TTTCGTGTT-TCAAAAATTT
* *
57645988 TTGTG-TTTCT-AAAATTCTCGTATTTCAAAAATTT
1 TCGTGTTTTCTAAAAATT-TCGTGTTTCAAAAATTT
* * * *
57646022 CCGTGTTCTC-AAAAAGTTATTGTGTTTC-AAAATTC
1 TCGTGTTTTCTAAAAA-TT-TCGTGTTTCAAAAATTT
*
57646057 TCGCGTTTTC-AAAA
1 TCGTGTTTTCTAAAA
57646071 CAAAAATTTC
Statistics
Matches: 207, Mismatches: 35, Indels: 41
0.73 0.12 0.14
Matches are distributed among these distances:
33 3 0.01
34 31 0.15
35 74 0.36
36 68 0.33
37 3 0.01
38 25 0.12
39 3 0.01
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.43
Consensus pattern (35 bp):
TCGTGTTTTCTAAAAATTTCGTGTTTCAAAAATTT
Found at i:57645900 original size:20 final size:21
Alignment explanation
Indices: 57645871--57645913 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
57645861 GTCGTGTTTT
*
57645871 AAAAATTTTC-GTATTTCAAA
1 AAAAAATTTCTGTATTTCAAA
*
57645891 AAAAAATTTCTGTGTTTCAAA
1 AAAAAATTTCTGTATTTCAAA
57645912 AA
1 AA
57645914 TTTCCGTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.47, C:0.09, G:0.07, T:0.37
Consensus pattern (21 bp):
AAAAAATTTCTGTATTTCAAA
Found at i:57649472 original size:14 final size:16
Alignment explanation
Indices: 57649433--57649472 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 16
57649423 TAAATTTTAA
*
57649433 AAATATAATATAGAAT
1 AAATTTAATATAGAAT
57649449 AAATTT-ATATA-AAT
1 AAATTTAATATAGAAT
57649463 -AATTTAATAT
1 AAATTTAATAT
57649473 TTTTTAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 5 0.23
14 7 0.32
15 5 0.23
16 5 0.23
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (16 bp):
AAATTTAATATAGAAT
Found at i:57651826 original size:24 final size:24
Alignment explanation
Indices: 57651748--57651828 Score: 67
Period size: 24 Copynumber: 3.3 Consensus size: 24
57651738 GGCCCACCTA
* * *
57651748 TATATATTTTTTAATTT-TAAAAAA
1 TATATATATTTT-ATTTATTAAAAT
* *
57651772 TATATTTATTTTA-ATATATAATAAT
1 TATATATATTTTATTTAT-TAA-AAT
*
57651797 TTTATATATTTTATTTATTAAAAT
1 TATATATATTTTATTTATTAAAAT
57651821 TATATATA
1 TATATATA
57651829 GTCATCTTAA
Statistics
Matches: 44, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
22 1 0.02
23 2 0.05
24 22 0.50
25 16 0.36
26 3 0.07
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (24 bp):
TATATATATTTTATTTATTAAAAT
Found at i:57653157 original size:2 final size:2
Alignment explanation
Indices: 57653150--57653182 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
57653140 ACTTACATTC
57653150 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
57653183 AAAGTTCACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:57656149 original size:14 final size:16
Alignment explanation
Indices: 57656110--57656149 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 16
57656100 TAAATTTTAA
*
57656110 AAATATAATATACAAT
1 AAATTTAATATACAAT
57656126 AAATTT-ATATA-AAT
1 AAATTTAATATACAAT
57656140 -AATTTAATAT
1 AAATTTAATAT
57656150 TTTTAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 5 0.23
14 7 0.32
15 5 0.23
16 5 0.23
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (16 bp):
AAATTTAATATACAAT
Found at i:57658203 original size:16 final size:16
Alignment explanation
Indices: 57658184--57658230 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
57658174 TAACAGTCTA
57658184 AATTTAAAATAATTCG
1 AATTTAAAATAATTCG
*
57658200 AATTTAAAACT-ATCCG
1 AATTTAAAA-TAATTCG
**
57658216 AACCTAAAATAATTC
1 AATTTAAAATAATTC
57658231 TAATGATTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 1 0.04
16 23 0.92
17 1 0.04
ACGTcount: A:0.49, C:0.15, G:0.04, T:0.32
Consensus pattern (16 bp):
AATTTAAAATAATTCG
Found at i:57659664 original size:14 final size:14
Alignment explanation
Indices: 57659645--57659672 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
57659635 GCAGTCATGC
57659645 CTTGAAGACTCCAT
1 CTTGAAGACTCCAT
57659659 CTTGAAGACTCCAT
1 CTTGAAGACTCCAT
57659673 TTTGCTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (14 bp):
CTTGAAGACTCCAT
Found at i:57659707 original size:27 final size:27
Alignment explanation
Indices: 57659669--57659732 Score: 128
Period size: 27 Copynumber: 2.4 Consensus size: 27
57659659 CTTGAAGACT
57659669 CCATTTTGCTAAAAACCCCTGCTTCAC
1 CCATTTTGCTAAAAACCCCTGCTTCAC
57659696 CCATTTTGCTAAAAACCCCTGCTTCAC
1 CCATTTTGCTAAAAACCCCTGCTTCAC
57659723 CCATTTTGCT
1 CCATTTTGCT
57659733 TACATTCATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.23, C:0.36, G:0.08, T:0.33
Consensus pattern (27 bp):
CCATTTTGCTAAAAACCCCTGCTTCAC
Found at i:57663961 original size:48 final size:48
Alignment explanation
Indices: 57663904--57664007 Score: 190
Period size: 48 Copynumber: 2.2 Consensus size: 48
57663894 TCGGATGGGT
* *
57663904 GAACGAGATCTACGGTGCACAGGTGTAGGTGACCTGCGCCGATAAGGA
1 GAACGAGATCTACGGCGCACAGGTGTAGGTGACCCGCGCCGATAAGGA
57663952 GAACGAGATCTACGGCGCACAGGTGTAGGTGACCCGCGCCGATAAGGA
1 GAACGAGATCTACGGCGCACAGGTGTAGGTGACCCGCGCCGATAAGGA
57664000 GAACGAGA
1 GAACGAGA
57664008 CTGAGATCTA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.29, C:0.22, G:0.36, T:0.13
Consensus pattern (48 bp):
GAACGAGATCTACGGCGCACAGGTGTAGGTGACCCGCGCCGATAAGGA
Found at i:57667750 original size:40 final size:39
Alignment explanation
Indices: 57667690--57667806 Score: 155
Period size: 39 Copynumber: 3.0 Consensus size: 39
57667680 AAATATATTT
* *
57667690 ATTTATTAATTTTAAAATATTTTTTTACATACTTTTTAAA
1 ATTTTTTAATTTTAAAATA-TTTTTTAAATACTTTTTAAA
* *
57667730 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTAAA
1 ATTTTTTAATTTTAAAATATTTTTTAAATACTTTTTAAA
* *
57667769 ATTTTTAAATTTTAAAATACTTTTTTAAAT-TTTTTTAA
1 ATTTTTTAATTTTAAAATA-TTTTTTAAATACTTTTTAA
57667807 TTTTAAAATA
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
39 42 0.62
40 26 0.38
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (39 bp):
ATTTTTTAATTTTAAAATATTTTTTAAATACTTTTTAAA
Found at i:57667764 original size:39 final size:40
Alignment explanation
Indices: 57667695--57667858 Score: 158
Period size: 40 Copynumber: 4.3 Consensus size: 40
57667685 TATTTATTTA
* *
57667695 TTAATTTTAAAATATTTTTTTACATAC-TTTTTAAATTTTT
1 TTAATTTTAAAATA-TTTTTAAAATACTTTTTTAAATTTTT
57667735 TTAATTTTAAAATATTTTTAAAATAC-TTTTT-AA-----
1 TTAATTTTAAAATATTTTTAAAATACTTTTTTAAATTTTT
*
57667768 --AATTTT-TAA-A-TTTTAAAATACTTTTTTAAATTTTTT
1 TTAATTTTAAAATATTTTTAAAATACTTTTTTAAA-TTTTT
*
57667804 T-AATTTTAAAATATTTTTAAAATACTTTTTTTAATTTTT
1 TTAATTTTAAAATATTTTTAAAATACTTTTTTAAATTTTT
57667843 TTAAAATTTTAAAATA
1 TT--AATTTTAAAATA
57667859 AAAATGGCCC
Statistics
Matches: 104, Mismatches: 5, Indels: 28
0.76 0.04 0.20
Matches are distributed among these distances:
28 11 0.11
29 6 0.06
30 4 0.04
31 6 0.06
37 6 0.06
38 4 0.04
39 22 0.21
40 33 0.32
42 12 0.12
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (40 bp):
TTAATTTTAAAATATTTTTAAAATACTTTTTTAAATTTTT
Found at i:57667798 original size:68 final size:69
Alignment explanation
Indices: 57667718--57667858 Score: 232
Period size: 68 Copynumber: 2.0 Consensus size: 69
57667708 ATTTTTTTAC
57667718 ATACTTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATAC-TTTTTAAAATTTTT-AAATTT
1 ATACTTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTAAAATTTTTAAAATTT
57667781 TAAA
66 TAAA
**
57667785 ATACTTTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAATTTTTTTAAAAT
1 ATAC-TTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATAC-TTTTTTAAAATTTTTAAAAT
57667850 TTTAAA
64 TTTAAA
57667856 ATA
1 ATA
57667859 AAAATGGCCC
Statistics
Matches: 68, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
67 4 0.06
68 39 0.57
70 12 0.18
71 13 0.19
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (69 bp):
ATACTTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTAAAATTTTTAAAATTT
TAAA
Found at i:57667822 original size:40 final size:41
Alignment explanation
Indices: 57667700--57667858 Score: 136
Period size: 39 Copynumber: 4.2 Consensus size: 41
57667690 ATTTATTAAT
* *
57667700 TTTAAAATATTTTTTTACATAC-TTTTTAAATTTTTTT-AAT
1 TTTAAAATA-TTTTTAAAATACTTTTTTAAATTTTTTTAAAT
57667740 TTTAAAATATTTTTAAAATAC-TTTTT--A-------AAAT
1 TTTAAAATATTTTTAAAATACTTTTTTAAATTTTTTTAAAT
*
57667771 TTT-TAA-ATTT-TAAAATACTTTTTTAAATTTTTTT--AAT
1 TTTAAAATATTTTTAAAATACTTTTTTAAA-TTTTTTTAAAT
*
57667808 TTTAAAATATTTTTAAAATACTTTTTTTAATTTTTTTAAAAT
1 TTTAAAATATTTTTAAAATACTTTTTTAAATTTTTTT-AAAT
57667850 TTTAAAATA
1 TTTAAAATA
57667859 AAAATGGCCC
Statistics
Matches: 97, Mismatches: 5, Indels: 32
0.72 0.04 0.24
Matches are distributed among these distances:
28 8 0.08
29 9 0.09
30 2 0.02
31 7 0.07
37 7 0.07
38 2 0.02
39 25 0.26
40 25 0.26
42 12 0.12
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.58
Consensus pattern (41 bp):
TTTAAAATATTTTTAAAATACTTTTTTAAATTTTTTTAAAT
Found at i:57667833 original size:29 final size:28
Alignment explanation
Indices: 57667750--57667826 Score: 120
Period size: 29 Copynumber: 2.8 Consensus size: 28
57667740 TTTAAAATAT
*
57667750 TTTTAAAATACTTTTTAAAATTTTTAAA
1 TTTTAAAATACTTTTTAAAATTTTTTAA
*
57667778 TTTTAAAATACTTTTTTAAATTTTTTTAA
1 TTTTAAAATAC-TTTTTAAAATTTTTTAA
57667807 TTTTAAAATA-TTTTTAAAAT
1 TTTTAAAATACTTTTTAAAAT
57667827 ACTTTTTTTA
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 9 0.20
28 11 0.24
29 25 0.56
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (28 bp):
TTTTAAAATACTTTTTAAAATTTTTTAA
Found at i:57673520 original size:209 final size:207
Alignment explanation
Indices: 57673018--57673953 Score: 930
Period size: 209 Copynumber: 4.6 Consensus size: 207
57673008 GTAGTTTTTC
* * * *
57673018 AGCTATGAGAAACTAATGTAGAACCACATTGTGCATTTTGATATTTGACTTTATAGTTTTTGACA
1 AGCTATGAGAAACTAATG-AAAACCACATTGTGCATTTTGACATTTGAATTTATAG-TTTTGACC
* * * *
57673083 TTCATTGCTGGTTAGCTGTG-TACAGGGACTTGGGTGTGAGCGTTGAATAGCCTATATGTC----
64 TTCATTGCTAGTTAGCTGTGTTACCGGGACTTGGGTGTGAGCTTTGGATAGCCTATATGTCTATG
** * * *
57673143 -C---A-ATATGCAT--TAGATATGGGTACTTAAAGAAAAATGAGGAGTCCAAGCAATATAGCTT
129 TCATTAGATATGGGTGCTAGATATGGATACTTAAAGAAAAATGAGGAGTTCAAGCAATATAGCTA
*
57673201 GTTGGTAATTTCTA
194 GTCGGTAATTTCTA
* * * * *
57673215 ATCTATGAGAATCTAATGGAAAACCACATTGTGTATTTTGACATTTGAATTTATACTTCTTGGCC
1 AGCTATGAGAAACTAAT-GAAAACCACATTGTGCATTTTGACATTTGAATTTATAGTT-TTGACC
* *
57673280 TTCATTGCTAGTTAGCGGTGTTACTGGGACTTGGGTGTGAGCTTTGGATAGCCTATATGTCTGAT
64 TTCATTGCTAGTTAGCTGTGTTACCGGGACTTGGGTGTGAGCTTTGGATAGCCTATATGTCT-AT
* *
57673345 GTACATTAGATATGGGTGCTAGATATGGATACTTCAAGAAAAAT-AGGAGTTCAAGCAGTATAGC
128 GT-CATTAGATATGGGTGCTAGATATGGATACTTAAAGAAAAATGAGGAGTTCAAGCAATATAGC
* *
57673409 TAGTCAGTGATTTCTA
192 TAGTCGGTAATTTCTA
* * * * *
57673425 AGCTATGAGAAAGTAATGAAAACCACATTATGCATTTTGATACTTGACTTTATAGGTTTTGACCT
1 AGCTATGAGAAACTAATGAAAACCACATTGTGCATTTTGACATTTGAATTTATA-GTTTTGACCT
* *
57673490 TCAATGCTAGTTAGCTGTGTTACCGGGACTTGGGTGTGAG-TGTTGCG-TAGCCTACATGTCCAA
65 TCATTGCTAGTTAGCTGTGTTACCGGGACTTGGGTGTGAGCT-TTG-GATAGCCTATATGT-C--
* * * * *
57673553 TATG-CATTAGATATTGGTGTTAG-TAAGGATACGTAAAGAAAAATGAGGAG-TCTGAGCAATAT
125 TATGTCATTAGATATGGGTGCTAGATATGGATACTTAAAGAAAAATGAGGAGTTC-AAGCAATAT
*
57673615 AGCTAGTCGGTAATTTCGA
189 AGCTAGTCGGTAATTTCTA
* * * *
57673634 AGCTATGAGAAACTAATG--AACCACATTGTGCATTTTGATATTTGAATCTATAGTTTTCAGTCT
1 AGCTATGAGAAACTAATGAAAACCACATTGTGCATTTTGACATTTGAATTTATAGTTTTGA-CCT
* * * * *
57673697 TTAGTGCTAGTTAACTGTGTTTCCGGGACTTGGGTGTGAGCATTGGATAGCC--TA----TATGT
65 TCATTGCTAGTTAGCTGTGTTACCGGGACTTGGGTGTGAGCTTTGGATAGCCTATATGTCTATGT
** * ***
57673756 C--TA-ATATGCAT-C-AGATATGGGTACTTAAAGAAAAATGAGGAGTTTGCGCAATATAGCTAG
130 CATTAGATATGGGTGCTAGATATGGATACTTAAAGAAAAATGAGGAGTTCAAGCAATATAGCTAG
* *
57673816 TCTGTAATCTCTA
195 TCGGTAATTTCTA
* * *
57673829 AGCTATGAAAAACTAATGAAGAACCACATTGTGCATTTTGGCATTTGAATTTCTAGTTTTTGACC
1 AGCTATGAGAAACTAATGAA-AACCACATTGTGCATTTTGACATTTGAATTTATAG-TTTTGACC
* * * *
57673894 TTCATTGCTATTTAG-TCATGTTACCGGGACTTGGGTGTGA-CGTTGGATAGCCCATATGTC
64 TTCATTGCTAGTTAGCT-GTGTTACCGGGACTTGGGTGTGAGCTTTGGATAGCCTATATGTC
57673954 CAATATGCAT
Statistics
Matches: 611, Mismatches: 87, Indels: 76
0.79 0.11 0.10
Matches are distributed among these distances:
194 2 0.00
195 65 0.11
196 8 0.01
197 83 0.14
198 106 0.17
199 8 0.01
205 2 0.00
206 7 0.01
207 76 0.12
208 22 0.04
209 157 0.26
210 48 0.08
211 26 0.04
212 1 0.00
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (207 bp):
AGCTATGAGAAACTAATGAAAACCACATTGTGCATTTTGACATTTGAATTTATAGTTTTGACCTT
CATTGCTAGTTAGCTGTGTTACCGGGACTTGGGTGTGAGCTTTGGATAGCCTATATGTCTATGTC
ATTAGATATGGGTGCTAGATATGGATACTTAAAGAAAAATGAGGAGTTCAAGCAATATAGCTAGT
CGGTAATTTCTA
Found at i:57673750 original size:207 final size:205
Alignment explanation
Indices: 57673163--57674060 Score: 823
Period size: 209 Copynumber: 4.4 Consensus size: 205
57673153 TAGATATGGG
* * * * *
57673163 TACTTAAAGAAAAATGAGGAGTCCAAGCAATATAGCTTGTTGGTAATTTCTAATCTATGAGAATC
1 TACTTAAAGAAAAATGAGGAGTCTAAGCAATATAGCTAGTCGGTAATTTCTAAGCTATGAGAAAC
* * * *
57673228 TAATGGAAAACCACATTGTGTATTTTGACATTTGAATTTATACTTCTTGGCCTTCATTGCTAGTT
66 TAATAG-AAACCACATTGTGCATTTTGACATTTGAATTTATAGTT-TTAGCCTTCATTGCTAGTT
* * * * ** * *
57673293 AGCGGTGTTACTGGGACTTGGGTGTGAGCTTTGGATAGCCTATATGTCTGATGTACATTAGATAT
129 AACTGTGTTACCGGGACTTGGGTGTGAGCGTTGGATAGCCTATATGTCCAATATGCATTAGATAT
57673358 GGGTGCTAGATATGGA
194 -GGTG-TAG-TA-GGA
* * * *
57673374 TACTTCAAGAAAAAT-AGGAGT-TCAAGCAGTATAGCTAGTCAGTGATTTCTAAGCTATGAGAAA
1 TACTTAAAGAAAAATGAGGAGTCT-AAGCAATATAGCTAGTCGGTAATTTCTAAGCTATGAGAAA
* * * * * *
57673437 GTAAT-GAAAACCACATTATGCATTTTGATACTTGACTTTATAGGTTTT-GACCTTCAATGCTAG
65 CTAATAG-AAACCACATTGTGCATTTTGACATTTGAATTTATA-GTTTTAG-CCTTCATTGCTAG
* * *
57673500 TTAGCTGTGTTACCGGGACTTGGGTGTGAGTGTTGCG-TAGCCTACATGTCCAATATGCATTAGA
127 TTAACTGTGTTACCGGGACTTGGGTGTGAGCGTTG-GATAGCCTATATGTCCAATATGCATTAGA
57673564 TATTGGTGTTAGTAAGGA
191 TA-TGGTG-TAGT-AGGA
* * *
57673582 TACGTAAAGAAAAATGAGGAGTCTGAGCAATATAGCTAGTCGGTAATTTCGAAGCTATGAGAAAC
1 TACTTAAAGAAAAATGAGGAGTCTAAGCAATATAGCTAGTCGGTAATTTCTAAGCTATGAGAAAC
* * * * *
57673647 TAAT-G-AACCACATTGTGCATTTTGATATTTGAATCTATAGTTTTCAGTCTTTAGTGCTAGTTA
66 TAATAGAAACCACATTGTGCATTTTGACATTTGAATTTATAGTTTT-AGCCTTCATTGCTAGTTA
* * * *
57673710 ACTGTGTTTCCGGGACTTGGGTGTGAGCATTGGATAGCCTATATGTCTAATATGCATCAGATA--
130 ACTGTGTTACCGGGACTTGGGTGTGAGCGTTGGATAGCCTATATGTCCAATATGCATTAGATATG
57673773 ---T-G--GG-
195 GTGTAGTAGGA
* ** * * *
57673777 TACTTAAAGAAAAATGAGGAGTTTGCGCAATATAGCTAGTCTGTAATCTCTAAGCTATGAAAAAC
1 TACTTAAAGAAAAATGAGGAGTCTAAGCAATATAGCTAGTCGGTAATTTCTAAGCTATGAGAAAC
* * *
57673842 TAAT-GAAGAACCACATTGTGCATTTTGGCATTTGAATTTCTAGTTTTTGACCTTCATTGCTA-T
66 TAATAG-A-AACCACATTGTGCATTTTGACATTTGAATTTATAGTTTTAG-CCTTCATTGCTAGT
* * * *
57673905 TTAGTCATGTTACCGGGACTTGGGTGTGA-CGTTGGATAGCCCATATGTCCAATATGCATTAG--
128 TAACT-GTGTTACCGGGACTTGGGTGTGAGCGTTGGATAGCCTATATGTCCAATATGCATTAGAT
57673967 AT-GT-T--T--G-
192 ATGGTGTAGTAGGA
* * * * *
57673974 TACTTCAAGAAAAATGAGGAGTCCAA--ATATAATAGCAAGTTGGTAATTTCTAAGCTATGGGAA
1 TACTTAAAGAAAAATGAGGAGTCTAAGCA-AT-ATAGCTAGTCGGTAATTTCTAAGCTATGAGAA
*
57674037 ACTAAT-GAATAACCACATTTTGCA
64 ACTAATAG-A-AACCACATTGTGCA
57674061 CTCTGCTATT
Statistics
Matches: 580, Mismatches: 85, Indels: 58
0.80 0.12 0.08
Matches are distributed among these distances:
195 65 0.11
196 4 0.01
197 104 0.18
198 66 0.11
199 1 0.00
200 1 0.00
206 6 0.01
207 97 0.17
208 19 0.03
209 155 0.27
210 48 0.08
211 14 0.02
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (205 bp):
TACTTAAAGAAAAATGAGGAGTCTAAGCAATATAGCTAGTCGGTAATTTCTAAGCTATGAGAAAC
TAATAGAAACCACATTGTGCATTTTGACATTTGAATTTATAGTTTTAGCCTTCATTGCTAGTTAA
CTGTGTTACCGGGACTTGGGTGTGAGCGTTGGATAGCCTATATGTCCAATATGCATTAGATATGG
TGTAGTAGGA
Found at i:57673993 original size:197 final size:197
Alignment explanation
Indices: 57673365--57674060 Score: 617
Period size: 197 Copynumber: 3.5 Consensus size: 197
57673355 TATGGGTGCT
* * * * *
57673365 AGATATGGATACTTCAAGAAAAAT-AGGAGTT-CAAGCAGTATAGCTAGTCAGTGATTTCTAAGC
1 AGATATGGGTACTTAAAGAAAAATGAGGAGTTGC--GCAATATAGCTAGTCTGTAATTTCTAAGC
* * * * * * *
57673428 TATGAGAAAGTAATGAA-AACCACATTATGCATTTTGATACTTGACTTTATAGGTTTTGA-CCTT
64 TATGAGAAACTAATGAAGAACCACATTGTGCATTTTGACATTTGAATCTATA-GTTTTCAGCCTT
* * * ** * *
57673491 CAATGCTAGTTAGCTGTGTTACCGGGACTTGGGTGTGAGTGTTGCG-TAGCCTACATGTCCAATA
128 CAGTGCTAGTTAACTATGTTACCGGGACTTGGGTGTGAGCATTG-GATAGCCCATATGTCCAATA
*
57673555 TGCATT
192 TGCATC
* * *
57673561 AGATATTGGTGTTAGTAAGGATACGTAAAGAAAAATGAGGAGTCTGAGCAATATAGCTAGTCGGT
1 AGATA-------T-G---GG-TACTTAAAGAAAAATGAGGAGT-TGCGCAATATAGCTAGTCTGT
* *
57673626 AATTTCGAAGCTATGAGAAACTAAT---GAACCACATTGTGCATTTTGATATTTGAATCTATAGT
53 AATTTCTAAGCTATGAGAAACTAATGAAGAACCACATTGTGCATTTTGACATTTGAATCTATAGT
* * * * *
57673688 TTTCAGTCTTTAGTGCTAGTTAACTGTGTTTCCGGGACTTGGGTGTGAGCATTGGATAGCCTATA
118 TTTCAGCCTTCAGTGCTAGTTAACTATGTTACCGGGACTTGGGTGTGAGCATTGGATAGCCCATA
*
57673753 TGTCTAATATGCATC
183 TGTCCAATATGCATC
*
57673768 AGATATGGGTACTTAAAGAAAAATGAGGAGTTTGCGCAATATAGCTAGTCTGTAATCTCTAAGCT
1 AGATATGGGTACTTAAAGAAAAATGAGGAG-TTGCGCAATATAGCTAGTCTGTAATTTCTAAGCT
* * * * *
57673833 ATGAAAAACTAATGAAGAACCACATTGTGCATTTTGGCATTTGAATTTCTAGTTTT-TGACCTTC
65 ATGAGAAACTAATGAAGAACCACATTGTGCATTTTGACATTTGAATCTATAGTTTTCAG-CCTTC
* * * *
57673897 ATTGCTA-TTTAGTCATGTTACCGGGACTTGGGTGTGA-CGTTGGATAGCCCATATGTCCAATAT
129 AGTGCTAGTTAACT-ATGTTACCGGGACTTGGGTGTGAGCATTGGATAGCCCATATGTCCAATAT
*
57673960 GCATT
193 GCATC
* ** * * ** *
57673965 AGATGTTTGTACTTCAAGAAAAATGAGGAG-TCCAAATATAATAGCAAGT-TGGTAATTTCTAAG
1 AGATATGGGTACTTAAAGAAAAATGAGGAGTTGCGCA-AT-ATAGCTAGTCT-GTAATTTCTAAG
* * *
57674028 CTATGGGAAACTAATGAATAACCACATTTTGCA
63 CTATGAGAAACTAATGAAGAACCACATTGTGCA
57674061 CTCTGCTATT
Statistics
Matches: 414, Mismatches: 59, Indels: 53
0.79 0.11 0.10
Matches are distributed among these distances:
195 64 0.15
196 11 0.03
197 106 0.26
198 66 0.16
199 1 0.00
200 1 0.00
203 1 0.00
204 1 0.00
206 7 0.02
207 98 0.24
208 13 0.03
209 44 0.11
210 1 0.00
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (197 bp):
AGATATGGGTACTTAAAGAAAAATGAGGAGTTGCGCAATATAGCTAGTCTGTAATTTCTAAGCTA
TGAGAAACTAATGAAGAACCACATTGTGCATTTTGACATTTGAATCTATAGTTTTCAGCCTTCAG
TGCTAGTTAACTATGTTACCGGGACTTGGGTGTGAGCATTGGATAGCCCATATGTCCAATATGCA
TC
Found at i:57677207 original size:12 final size:12
Alignment explanation
Indices: 57677190--57677214 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
57677180 CATTGTTTTG
57677190 TAGCTTTTAAAA
1 TAGCTTTTAAAA
57677202 TAGCTTTTAAAA
1 TAGCTTTTAAAA
57677214 T
1 T
57677215 GAAGTGATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (12 bp):
TAGCTTTTAAAA
Found at i:57677280 original size:71 final size:71
Alignment explanation
Indices: 57677202--57677333 Score: 228
Period size: 71 Copynumber: 1.9 Consensus size: 71
57677192 GCTTTTAAAA
* * *
57677202 TAGCTTTTAAAATGAAGTGATTAAAATGTAAATTTATTAATAGTTTAGTAATTTTGAGTGTGATT
1 TAGCTTTTAAAATGAAGTGATTAAAATGTAAACTTATTAATAGTTCAGTAACTTTGAGTGTGATT
57677267 GTTTTG
66 GTTTTG
*
57677273 TAGCTTTTAAAATGAAGTGATTAAAATGTAAACTTATTAATAGTTCAGTGACTTTGAGTGT
1 TAGCTTTTAAAATGAAGTGATTAAAATGTAAACTTATTAATAGTTCAGTAACTTTGAGTGT
57677334 AAATTTTTTA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.35, C:0.04, G:0.18, T:0.43
Consensus pattern (71 bp):
TAGCTTTTAAAATGAAGTGATTAAAATGTAAACTTATTAATAGTTCAGTAACTTTGAGTGTGATT
GTTTTG
Found at i:57685589 original size:30 final size:30
Alignment explanation
Indices: 57685526--57685589 Score: 87
Period size: 30 Copynumber: 2.1 Consensus size: 30
57685516 TCCGGATGAA
*
57685526 AAAAGTACAAAGATTAAATTGATCAATTCT
1 AAAAGTACAAAGATTAAATTGATCAAATCT
57685556 AAAAGTA-AAACGATTAAAATTGATCAAAT-T
1 AAAAGTACAAA-GATT-AAATTGATCAAATCT
57685586 AAAA
1 AAAA
57685590 ATATAGACTA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 3 0.10
30 16 0.52
31 12 0.39
ACGTcount: A:0.56, C:0.08, G:0.09, T:0.27
Consensus pattern (30 bp):
AAAAGTACAAAGATTAAATTGATCAAATCT
Found at i:57687523 original size:2 final size:2
Alignment explanation
Indices: 57687516--57687541 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
57687506 AATCAACCAA
57687516 AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC
57687542 TACATACATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:57689964 original size:20 final size:20
Alignment explanation
Indices: 57689934--57689981 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
57689924 TCATTTAAAT
57689934 TTAATTATAAAATATTTTATA
1 TTAA-TATAAAATATTTTATA
* *
57689955 TTAATATAAACTTTTTTATA
1 TTAATATAAAATATTTTATA
*
57689975 TTTATAT
1 TTAATAT
57689982 TATTTTTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (20 bp):
TTAATATAAAATATTTTATA
Found at i:57694426 original size:18 final size:20
Alignment explanation
Indices: 57694395--57694436 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
57694385 AAGCTTGAAA
57694395 TTTTAAAATAAATT-TATTT
1 TTTTAAAATAAATTGTATTT
*
57694414 TTTTAAAAT-AATTGTCTTT
1 TTTTAAAATAAATTGTATTT
57694433 TTTT
1 TTTT
57694437 TTCAATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (20 bp):
TTTTAAAATAAATTGTATTT
Found at i:57698764 original size:2 final size:2
Alignment explanation
Indices: 57698757--57698781 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
57698747 TTCATTAATC
57698757 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
57698782 AAACCGTGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:57699936 original size:19 final size:19
Alignment explanation
Indices: 57699901--57699955 Score: 60
Period size: 18 Copynumber: 2.9 Consensus size: 19
57699891 TTTTTAAAAA
*
57699901 TATAAAT-TTTGAAATTTT
1 TATAAATATTTTAAATTTT
57699919 TATAAATATTTTAAA-TTT
1 TATAAATATTTTAAATTTT
* *
57699937 TAAAAATTATTTTGAATTT
1 TATAAA-TATTTTAAATTT
57699956 ATTTTTTTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
18 15 0.48
19 14 0.45
20 2 0.06
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.55
Consensus pattern (19 bp):
TATAAATATTTTAAATTTT
Found at i:57699938 original size:18 final size:18
Alignment explanation
Indices: 57699901--57699955 Score: 58
Period size: 19 Copynumber: 3.0 Consensus size: 18
57699891 TTTTTAAAAA
*
57699901 TATAAAT-TTTGAAATTTT
1 TATAAATATTTTAAA-TTT
57699919 TATAAATATTTTAAATTT
1 TATAAATATTTTAAATTT
* *
57699937 TAAAAATTATTTTGAATTT
1 TATAAA-TATTTTAAATTT
57699956 ATTTTTTTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
18 15 0.47
19 17 0.53
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.55
Consensus pattern (18 bp):
TATAAATATTTTAAATTT
Found at i:57700401 original size:2 final size:2
Alignment explanation
Indices: 57700358--57700386 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
57700348 AATACTTTAT
57700358 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
57700387 TAGTTTGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:57706890 original size:31 final size:31
Alignment explanation
Indices: 57706824--57706942 Score: 77
Period size: 31 Copynumber: 3.9 Consensus size: 31
57706814 ACAACAAAAA
** * * *
57706824 AAAAATTTT-GAAGAGCCTAATTGAAATTTTT
1 AAAAATTTTAGAAG-GTTTAATTAAAATCTTC
57706855 AAAAATTTTCA-AAGGTTTAA-TAATATAT-TTC
1 AAAAATTTT-AGAAGGTTTAATTAA-A-ATCTTC
* *
57706886 AAAAACTTTAGAGGGTTTAATTAAAATCTTC
1 AAAAATTTTAGAAGGTTTAATTAAAATCTTC
* * *
57706917 AAAAATTTT-GAGGGTATAACTAAAAT
1 AAAAATTTTAGAAGGTTTAATTAAAAT
57706943 TTTTTAAAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
30 20 0.28
31 44 0.61
32 8 0.11
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.37
Consensus pattern (31 bp):
AAAAATTTTAGAAGGTTTAATTAAAATCTTC
Found at i:57706941 original size:30 final size:31
Alignment explanation
Indices: 57706883--57706942 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
57706873 AATAATATAT
* *
57706883 TTCAAAAACTTTAGAGGGTTTAATTAAAATC
1 TTCAAAAACTTTAGAGGGTATAACTAAAATC
*
57706914 TTCAAAAA-TTTTGAGGGTATAACTAAAAT
1 TTCAAAAACTTTAGAGGGTATAACTAAAAT
57706943 TTTTTAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.43, C:0.08, G:0.13, T:0.35
Consensus pattern (31 bp):
TTCAAAAACTTTAGAGGGTATAACTAAAATC
Found at i:57708238 original size:31 final size:31
Alignment explanation
Indices: 57708170--57708240 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 31
57708160 TTAATATAAT
*
57708170 ATTTGGTACTTGAACTTGATATATTTTTCTA
1 ATTTGGTACTTGAACTTGATATATTTTCCTA
* *
57708201 ACTTGGT-CTCTGAACTTGACTCT-TTTTCCTA
1 ATTTGGTACT-TGAACTTGA-TATATTTTCCTA
57708232 ATTTGGTAC
1 ATTTGGTAC
57708241 CTAATTTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
30 2 0.06
31 28 0.85
32 3 0.09
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTTGGTACTTGAACTTGATATATTTTCCTA
Found at i:57708680 original size:31 final size:32
Alignment explanation
Indices: 57708640--57708775 Score: 126
Period size: 31 Copynumber: 4.4 Consensus size: 32
57708630 AAGAAAAAGC
57708640 TTAGGTACCAAATTAAG-AAAAAATGTCAAGT
1 TTAGGTACCAAATTAAGCAAAAAATGTCAAGT
* *
57708671 TCAGGTACCAAATT-AGAAAAAAAGTGTCAAGT
1 TTAGGTACCAAATTAAGCAAAAAA-TGTCAAGT
* * *
57708703 TGAGGTACCAATTTGAGCCCAAAAAA----AA-T
1 TTAGGTACCAAATTAAG--CAAAAAATGTCAAGT
*
57708732 TTAGGTACCAAATTAAG-AAAAAACGTCAAGT
1 TTAGGTACCAAATTAAGCAAAAAATGTCAAGT
*
57708763 TTAAGTACCAAAT
1 TTAGGTACCAAAT
57708776 ATTATATTAA
Statistics
Matches: 87, Mismatches: 8, Indels: 20
0.76 0.07 0.17
Matches are distributed among these distances:
26 6 0.07
29 15 0.17
30 6 0.07
31 32 0.37
32 20 0.23
33 2 0.02
35 6 0.07
ACGTcount: A:0.47, C:0.13, G:0.16, T:0.24
Consensus pattern (32 bp):
TTAGGTACCAAATTAAGCAAAAAATGTCAAGT
Found at i:57710932 original size:29 final size:29
Alignment explanation
Indices: 57710898--57710966 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 29
57710888 GAATTTTTTT
*
57710898 AAAATTTTAATTAATCTCTCAAAAACTTA
1 AAAATTTTAATTAATCTCACAAAAACTTA
* * *
57710927 AAAATTCTT-ATTAATCTCACAAGAATTTT
1 AAAATT-TTAATTAATCTCACAAAAACTTA
57710956 AAAATTTTAAT
1 AAAATTTTAAT
57710967 CAGACCCCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
28 2 0.06
29 30 0.88
30 2 0.06
ACGTcount: A:0.46, C:0.12, G:0.01, T:0.41
Consensus pattern (29 bp):
AAAATTTTAATTAATCTCACAAAAACTTA
Found at i:57720160 original size:30 final size:32
Alignment explanation
Indices: 57720124--57720196 Score: 82
Period size: 30 Copynumber: 2.4 Consensus size: 32
57720114 TCTAATTTGA
*
57720124 TAATTTGGTATCC-AAATTT-AATACTTTTT-T
1 TAATTTGGTATCCTAAATTTGAAT-CTTTTTCC
*
57720154 TAATTTGATA-CCTAAATTTGAATCTTTTTCC
1 TAATTTGGTATCCTAAATTTGAATCTTTTTCC
*
57720185 TAATTTAGTATC
1 TAATTTGGTATC
57720197 TAATCTTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
29 2 0.06
30 21 0.60
31 11 0.31
32 1 0.03
ACGTcount: A:0.30, C:0.12, G:0.07, T:0.51
Consensus pattern (32 bp):
TAATTTGGTATCCTAAATTTGAATCTTTTTCC
Found at i:57724980 original size:90 final size:91
Alignment explanation
Indices: 57724881--57725062 Score: 339
Period size: 90 Copynumber: 2.0 Consensus size: 91
57724871 TCTGAATTAA
* *
57724881 ATTTAATTTACTTAGCCCAACAAATTGAAGATTTAGACTCATTTTGAAGCTCGATTT-TAAAAAA
1 ATTTAATTTACTTAGCCCAACAAATTAAAGATTTAGACTCATTTTGAAGCTCGATTTAAAAAAAA
57724945 ATCAATCGTATTAAATTAATAGGTCG
66 ATCAATCGTATTAAATTAATAGGTCG
57724971 ATTTAATTTACTTAGCCCAACAAATTAAAGATTTAGACTCATTTTGAAGCTCGATTTAAAAAAAA
1 ATTTAATTTACTTAGCCCAACAAATTAAAGATTTAGACTCATTTTGAAGCTCGATTTAAAAAAAA
57725036 ATCAATCGTATTAAATTAATAGGTCG
66 ATCAATCGTATTAAATTAATAGGTCG
57725062 A
1 A
57725063 AACTCGTTGA
Statistics
Matches: 89, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
90 56 0.63
91 33 0.37
ACGTcount: A:0.41, C:0.13, G:0.12, T:0.35
Consensus pattern (91 bp):
ATTTAATTTACTTAGCCCAACAAATTAAAGATTTAGACTCATTTTGAAGCTCGATTTAAAAAAAA
ATCAATCGTATTAAATTAATAGGTCG
Found at i:57728430 original size:205 final size:204
Alignment explanation
Indices: 57728076--57728893 Score: 1086
Period size: 205 Copynumber: 4.0 Consensus size: 204
57728066 TGTTTCATAG
* *
57728076 GTTTCTATAACTCTCTAAAGCAAAATACTAGTCGCCGGACAACGAAACATTCTCTCGAGTCAAAT
1 GTTTCTATAACTCTCTAAAGCAAAATACTAGTCGCCGGACAACAAAACATTCTCTAGAGTCAAAT
* ** * * *
57728141 CCAATCTTATGGACCAACTTGTACTAAGACATTCATTCACCGGACTGTCGCAATACATCTCGTTT
66 CCAATTTTATGGACCAACTTGTACCGAGACATTCATTCACCAGACTTTCGCAATGCATCTCGTTT
* * * *
57728206 CCACAATAGAACGAAGATGAAAGCTCGTACATGTGTTTATGCAAACTGAGTTTTAGCTTCTCAAG
131 CCACGATAGAACAAAGATGAAAGCTCGT-CATGTGTTTATGCAAACCGAGTTTTAGCTTCTCAAT
57728271 ATGCAGCAAT
195 ATGCAGCAAT
* * *
57728281 GTTTCTATAACTCTCTAAAGCAAAATACTAGTTGCCGGACTACAAAACATTCTCAAGAGTCAAAT
1 GTTTCTATAACTCTCTAAAGCAAAATACTAGTCGCCGGACAACAAAACATTCTCTAGAGTCAAAT
* ** * * *
57728346 CCAATTTTATGGACCAGCTTCAACTGAGACATTCATACCCCAGACTTTCGCAATGCATCTCGTTT
66 CCAATTTTATGGACCAACTTGTACCGAGACATTCATTCACCAGACTTTCGCAATGCATCTCGTTT
** * * *
57728411 CCGTGATAGAACAAAGATGAAAGCTCGTACATGTGTTAATGAAAACCAAGTTTTAGCTTCTCAAT
131 CCACGATAGAACAAAGATGAAAGCTCGT-CATGTGTTTATGCAAACCGAGTTTTAGCTTCTCAAT
57728476 ATGCAGCAAT
195 ATGCAGCAAT
* *
57728486 GTTTCTATAACTCTCTAAAGCAAAATACTAGTCGCCAGACAACAAAACATTTTCTCA-AGTC-AA
1 GTTTCTATAACTCTCTAAAGCAAAATACTAGTCGCCGGACAACAAAACATTCTCT-AGAGTCAAA
* * * * *
57728549 TTCGATTTTATGGACCAACTT-TGACCGAGACATTCATTCGCCATACTTTCGCAATGCATCTTGT
65 TCCAATTTTATGGACCAACTTGT-ACCGAGACATTCATTCACCAGACTTTCGCAATGCATCTCGT
* * * *
57728613 TTCCACGATAGAACAGAGATGAAAGCTAGGTCTTGTGTTTATGCAGACCCGAGTTTTAGCTTCTC
129 TTCCACGATAGAACAAAGATGAAAGCT-CGTCATGTGTTTATGCA-AACCGAGTTTTAGCTTCTC
57728678 AATATGCAGCAAT
192 AATATGCAGCAAT
* *
57728691 GTTTCTACAACTCTCTAAAGCAAAATACTAGTCGCCGGACAACAAAACTTTCTCTAGAGTCAAAT
1 GTTTCTATAACTCTCTAAAGCAAAATACTAGTCGCCGGACAACAAAACATTCTCTAGAGTCAAAT
* * *
57728756 CCGATTTTATGGACCAACTTGTACCGAGACATTCATTCACCGGACTTTCGCAATGCATCTCGTAT
66 CCAATTTTATGGACCAACTTGTACCGAGACATTCATTCACCAGACTTTCGCAATGCATCTCGTTT
* ** ** * *
57728821 -CAGAGATAGAACGGAGATGAAAGCTCGGTCGCGTGTCTACGCAAACCCGAGTTTTAGCTTCTCA
131 CCA-CGATAGAACAAAGATGAAAGCTC-GTCATGTGTTTATGCAAA-CCGAGTTTTAGCTTCTCA
57728885 ATATGCAGC
193 ATATGCAGC
57728894 CAGGATTAAA
Statistics
Matches: 538, Mismatches: 65, Indels: 19
0.86 0.10 0.03
Matches are distributed among these distances:
204 92 0.17
205 325 0.60
206 120 0.22
207 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (204 bp):
GTTTCTATAACTCTCTAAAGCAAAATACTAGTCGCCGGACAACAAAACATTCTCTAGAGTCAAAT
CCAATTTTATGGACCAACTTGTACCGAGACATTCATTCACCAGACTTTCGCAATGCATCTCGTTT
CCACGATAGAACAAAGATGAAAGCTCGTCATGTGTTTATGCAAACCGAGTTTTAGCTTCTCAATA
TGCAGCAAT
Found at i:57730262 original size:3 final size:3
Alignment explanation
Indices: 57730254--57730290 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
57730244 TTTTGATTTT
*
57730254 TAA TAA TAA TAA TAA CAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
57730291 CAAAGGTTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:57731391 original size:10 final size:10
Alignment explanation
Indices: 57731376--57731459 Score: 65
Period size: 11 Copynumber: 8.8 Consensus size: 10
57731366 AAAACAAAAA
57731376 TTTAAAATAT
1 TTTAAAATAT
57731386 TTT-AAA-A-
1 TTTAAAATAT
*
57731393 TTAAAAAGTAT
1 TTTAAAA-TAT
*
57731404 TTTAAAATAA
1 TTTAAAATAT
57731414 TTT-AAA-A-
1 TTTAAAATAT
57731421 TTTAAAA-AT
1 TTTAAAATAT
57731430 TTTAAAAGTAT
1 TTTAAAA-TAT
*
57731441 TTAAAAAGTAT
1 TTTAAAA-TAT
57731452 TTTAAAAT
1 TTTAAAAT
57731460 TAAAAATTAA
Statistics
Matches: 61, Mismatches: 5, Indels: 16
0.74 0.06 0.20
Matches are distributed among these distances:
7 5 0.08
8 9 0.15
9 13 0.21
10 10 0.16
11 24 0.39
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.43
Consensus pattern (10 bp):
TTTAAAATAT
Found at i:57731398 original size:29 final size:28
Alignment explanation
Indices: 57731353--57731428 Score: 89
Period size: 28 Copynumber: 2.6 Consensus size: 28
57731343 ACCAAAAATT
57731353 TATTTTAAAAATTAAAACAAAAATTTAAAA
1 TATTTT-AAAATTAAAA-AAAAATTTAAAA
** *
57731383 TATTTTAAAATTAAAAAGTATTTTAAAA
1 TATTTTAAAATTAAAAAAAAATTTAAAA
* *
57731411 TAATTTAAAATTTAAAAA
1 TATTTTAAAATTAAAAAA
57731429 TTTTAAAAGT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
28 24 0.60
29 10 0.25
30 6 0.15
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.38
Consensus pattern (28 bp):
TATTTTAAAATTAAAAAAAAATTTAAAA
Found at i:57731404 original size:18 final size:17
Alignment explanation
Indices: 57731372--57731411 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 17
57731362 AATTAAAACA
*
57731372 AAAATTTAAAATATTTT
1 AAAATTAAAAATATTTT
57731389 AAAATTAAAAAGTATTTT
1 AAAATTAAAAA-TATTTT
57731407 AAAAT
1 AAAAT
57731412 AATTTAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (17 bp):
AAAATTAAAAATATTTT
Found at i:57731417 original size:28 final size:26
Alignment explanation
Indices: 57731371--57731446 Score: 93
Period size: 28 Copynumber: 2.9 Consensus size: 26
57731361 AAATTAAAAC
*
57731371 AAAAA-TTTAAAATATTTTAAAATTA
1 AAAAATTTTAAAATAATTTAAAATTA
*
57731396 AAAAGTATTTTAAAATAATTTAAAATTT
1 AAAA--ATTTTAAAATAATTTAAAATTA
57731424 AAAAATTTTAAAAGT-ATTTAAAA
1 AAAAATTTTAAAA-TAATTTAAAA
57731447 AGTATTTTAA
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
25 4 0.09
26 17 0.38
27 2 0.04
28 22 0.49
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (26 bp):
AAAAATTTTAAAATAATTTAAAATTA
Found at i:57731463 original size:37 final size:37
Alignment explanation
Indices: 57731374--57731467 Score: 111
Period size: 37 Copynumber: 2.5 Consensus size: 37
57731364 TTAAAACAAA
* * *
57731374 AATTTAAAATATTTTAAAA-TTAAAAAGTATTTTAAAAT
1 AATTT-AAA-ATTTAAAAATTTTAAAAGTATTTAAAAAT
57731412 AATTTAAAATTTAAAAATTTTAAAAGTATTTAAAAAGT
1 AATTTAAAATTTAAAAATTTTAAAAGTATTTAAAAA-T
*
57731450 ATTTTAAAA-TTAAAAATT
1 AATTTAAAATTTAAAAATT
57731468 AAAAATAAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
36 8 0.16
37 28 0.56
38 14 0.28
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.41
Consensus pattern (37 bp):
AATTTAAAATTTAAAAATTTTAAAAGTATTTAAAAAT
Found at i:57734021 original size:26 final size:25
Alignment explanation
Indices: 57733973--57734020 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
57733963 TTTTATTTTT
57733973 ATTTTTAATTTTAAAATACTTTTAA
1 ATTTTTAATTTTAAAATACTTTTAA
* *
57733998 ATTTTTTATTTTAAAATATTTTT
1 ATTTTTAATTTTAAAATACTTTT
57734021 TTTGTGTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (25 bp):
ATTTTTAATTTTAAAATACTTTTAA
Found at i:57737451 original size:18 final size:18
Alignment explanation
Indices: 57737428--57737463 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
57737418 GGTCCGACAT
57737428 CAGCTCCAACGACGGCCA
1 CAGCTCCAACGACGGCCA
* *
57737446 CAGCTCCATCGGCGGCCA
1 CAGCTCCAACGACGGCCA
57737464 TGGCTCCGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.22, C:0.44, G:0.25, T:0.08
Consensus pattern (18 bp):
CAGCTCCAACGACGGCCA
Found at i:57751398 original size:176 final size:174
Alignment explanation
Indices: 57751040--57751722 Score: 772
Period size: 176 Copynumber: 3.9 Consensus size: 174
57751030 CCAAACAGTG
** * * *
57751040 ATTAAACTGAGAGTGAATACATACAATTCCTACAAGATTATCACAACGCTAGGCAAAATCAGATC
1 ATTAAACTGAGAGACAATACATACAATTCCTACAAAATTATCACAATGCTAAGCAAAATCAGATC
* ** * *
57751105 GAAAATCATCAATTCAT-A--CTATATAATAAAACGTCG-ATCTGAAATTTTAATCTATTGTCTT
66 GAAAATCATCAATT-ATGATGTTATATAATAAAAC-AAGAATCTGAAATTTTCATCTATAGTCTT
* * *
57751166 CTTGTTTCATATCTATTCTCAGAAACCAAACAGTAGCTAAACGATCA
129 CTTTTTTC-TATATATTCTCAGGAACCAAACAGTAGCTAAACGATCA
*
57751213 ATTAAACTGAGAGACAATACATACAATT-CTGACAAAAGTATCACAATGCTAAGCAAAATCAGAT
1 ATTAAACTGAGAGACAATACATACAATTCCT-ACAAAATTATCACAATGCTAAGCAAAATCAGAT
* * *** * *
57751277 ACGAAGATCATCGAACTATGATGTTATATAATAAAATGTGAATCTGAAATTTCCATCTATTGTCC
65 -CGAAAATCATC-AATTATGATGTTATATAATAAAACAAGAATCTGAAATTTTCATCTATAGT-C
**
57751342 TT-TTTTTTCTATATATTCTCAGGAACCAAACAGTAGCTAAAATATCA
127 TTCTTTTTTCTATATATTCTCAGGAACCAAACAGTAGCTAAACGATCA
* ** * * * * *
57751389 GTTAAACTGACCG--GATACATACAATTCCAACAAAATTATCACAATGCCAAACAAAAGCAGATC
1 ATTAAACTGAGAGACAATACATACAATTCCTACAAAATTATCACAATGCTAAGCAAAATCAGATC
** * *
57751452 GAAAAGAATCAATGTATGTTGTTATATAATAAAACAAGAATCTGAAATTTTCATATATAGTCTTC
66 GAAAATCATCAAT-TATGATGTTATATAATAAAACAAGAATCTGAAATTTTCATCTATAGTCTTC
* *
57751517 TTTTTTCCAGTATACTCTCAGGAACCAAACAGTAGCTAAACGATCA
130 TTTTTTCTA-TATATTCTCAGGAACCAAACAGTAGCTAAACGATCA
* * * * * *
57751563 ATTAAACTGAGA-ACGGAGACGTACATTTCCTACAAACTTATCGCAATGCTAAGCAAAATCAGAT
1 ATTAAACTGAGAGAC-AATACATACAATTCCTACAAAATTATCACAATGCTAAGCAAAATCAGAT
* * *
57751627 CAAAAATCATCAATTTATGACGTTATAAAATAAAACAAGAATCTGAAATTTTCATCTATAGTCTT
65 CGAAAATCATCAA-TTATGATGTTATATAATAAAACAAGAATCTGAAATTTTCATCTATAGTCTT
*
57751692 CTTTTTTCCAATATATTCTCAGGAACCAAAC
129 CTTTTTT-CTATATATTCTCAGGAACCAAAC
57751723 GATCAATTAA
Statistics
Matches: 429, Mismatches: 64, Indels: 31
0.82 0.12 0.06
Matches are distributed among these distances:
172 7 0.02
173 111 0.26
174 95 0.22
175 5 0.01
176 167 0.39
177 41 0.10
178 3 0.01
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (174 bp):
ATTAAACTGAGAGACAATACATACAATTCCTACAAAATTATCACAATGCTAAGCAAAATCAGATC
GAAAATCATCAATTATGATGTTATATAATAAAACAAGAATCTGAAATTTTCATCTATAGTCTTCT
TTTTTCTATATATTCTCAGGAACCAAACAGTAGCTAAACGATCA
Found at i:57751542 original size:174 final size:172
Alignment explanation
Indices: 57751056--57751797 Score: 757
Period size: 176 Copynumber: 4.3 Consensus size: 172
57751046 CTGAGAGTGA
* * *
57751056 ATACATACAATTCCTACAAGATTATCACAACGCTAGGCAAAATCAGATCGAAAATCATCAATTCA
1 ATACATACAATTCCTACAAAATTATCACAATGCTAAGCAAAATCAGATCGAAAATCATCAATT-A
* ** * * *
57751121 T-A--CTATATAATAAAACGTCG-ATCTGAAATTTTAATCTATTGTCTTCTTGTTT-CATATCTA
65 TGATGTTATATAATAAAAC-AAGAATCTGAAATTTTCATCTATAGTCTTCTTTTTTCCATA--TA
* *
57751181 TTCTCAGAAACCAAACAGTAGCTAAACGATCAATTAAACTGAGA-GACA
127 TTCTCAGGAACCAAACAGTAGCTAAACGATCAATTAAACTGA-ACG--G
* * *
57751229 ATACATACAATT-CTGACAAAAGTATCACAATGCTAAGCAAAATCAGATACGAAGATCATCGAAC
1 ATACATACAATTCCT-ACAAAATTATCACAATGCTAAGCAAAATCAGAT-CGAAAATCATC-AAT
*** * * *
57751293 TATGATGTTATATAATAAAATGTGAATCTGAAATTTCCATCTATTGTCCTT-TTTTTTCTATATA
63 TATGATGTTATATAATAAAACAAGAATCTGAAATTTTCATCTATAGT-CTTCTTTTTTCCATATA
** * *
57751357 TTCTCAGGAACCAAACAGTAGCTAAAATATCAGTTAAACTGACCGG
127 TTCTCAGGAACCAAACAGTAGCTAAACGATCAATTAAACTGAACGG
* * * * **
57751403 ATACATACAATTCCAACAAAATTATCACAATGCCAAACAAAAGCAGATCGAAAAGAATCAATGTA
1 ATACATACAATTCCTACAAAATTATCACAATGCTAAGCAAAATCAGATCGAAAATCATCAAT-TA
* * *
57751468 TGTTGTTATATAATAAAACAAGAATCTGAAATTTTCATATATAGTCTTCTTTTTTCCAGTATACT
65 TGATGTTATATAATAAAACAAGAATCTGAAATTTTCATCTATAGTCTTCTTTTTTCCA-TATATT
57751533 CTCAGGAACCAAACAGTAGCTAAACGATCAATTAAACTGAGAACGG
129 CTCAGGAACCAAACAGTAGCTAAACGATCAATTAAACT--GAACGG
* * * * * *
57751579 AGACGTACATTTCCTACAAACTTATCGCAATGCTAAGCAAAATCAGATCAAAAATCATCAATTTA
1 ATACATACAATTCCTACAAAATTATCACAATGCTAAGCAAAATCAGATCGAAAATCATCAA-TTA
* *
57751644 TGACGTTATAAAATAAAACAAGAATCTGAAATTTTCATCTATAGTCTTCTTTTTTCCAATATATT
65 TGATGTTATATAATAAAACAAGAATCTGAAATTTTCATCTATAGTCTTCTTTTTTCC-ATATATT
*
57751709 CTCAGG-----AAC-----C-AAACGATCAATTAAAATGAGAGCGG
129 CTCAGGAACCAAACAGTAGCTAAACGATCAATTAAACTGA-A-CGG
* * * * *
57751744 ATACGTACATTTCCTATAAAATTATCGCAATGCTAAGCAAAATCAGATTGAAAA
1 ATACATACAATTCCTACAAAATTATCACAATGCTAAGCAAAATCAGATCGAAAA
57751798 AATAAACAGT
Statistics
Matches: 484, Mismatches: 65, Indels: 48
0.81 0.11 0.08
Matches are distributed among these distances:
163 2 0.00
164 1 0.00
165 68 0.14
166 1 0.00
171 3 0.01
172 7 0.01
173 97 0.20
174 93 0.19
175 5 0.01
176 162 0.33
177 39 0.08
178 6 0.01
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (172 bp):
ATACATACAATTCCTACAAAATTATCACAATGCTAAGCAAAATCAGATCGAAAATCATCAATTAT
GATGTTATATAATAAAACAAGAATCTGAAATTTTCATCTATAGTCTTCTTTTTTCCATATATTCT
CAGGAACCAAACAGTAGCTAAACGATCAATTAAACTGAACGG
Found at i:57751552 original size:350 final size:334
Alignment explanation
Indices: 57750870--57751722 Score: 892
Period size: 350 Copynumber: 2.5 Consensus size: 334
57750860 CAACCATTAA
* * * * * * *
57750870 ATCAATTAAACAGATAACGGATACATACAATCCCCTACAAAATTATCACAATGCTTAGCAAAACC
1 ATCAATTAAACTGAGAACGAAGACATACAAT-TCCTACAAAATTATCACAATGCTAAGCAAAATC
* * * * *
57750935 ATATCGAAAACCAACAATTTATGACGTTATATAATAAAAATGGAATATGAAGTTTTCATCTATTG
65 AGATCGAAAATCATCAATTTATGACGTTATATAAT-AAAATGGAATCTGAAATTTTCATCTATTG
* * * * *
57751000 TCATATTTGTTTCTTATATATTCTCAGGAACCAAACAGTGATTAAACTGAGAGTGAATACATACA
129 TCCT-TTTTTTTC-TATATATTCTCAGGAACCAAACAGTGATAAAACTGAAACTGAATACATACA
* * * ** * **
57751065 ATTCCTACAAGATTATCACAACGCTAGGCAAAATCAGATCGAAAATCATCAATTCATACTATATA
192 ATTCCAACAAAATTATCACAACGCCAAACAAAAGCAGATCGAAAAGAATCAATTCATACTATATA
** * * *
57751130 ATAAAACGTCGATCTGAAATTTTAATCTATTGTCTTCTTGTTTCATATCTATTCTCAGAAACCAA
257 ATAAAACGAAGATCTGAAATTTTAATATATAGTCTTCTTGTTTCATA-CTACTCTCAGAAACCAA
57751195 ACAGTAGCTAAACG
321 ACAGTAGCTAAACG
* *
57751209 ATCAATTAAACTGAGAGAC-AATACATACAATT-CTGACAAAAGTATCACAATGCTAAGCAAAAT
1 ATCAATTAAACTGAGA-ACGAAGACATACAATTCCT-ACAAAATTATCACAATGCTAAGCAAAAT
* * * *
57751272 CAGATACGAAGATCATCGAA-CTATGATGTTATATAATAAAATGTGAATCTGAAATTTCCATCTA
64 CAGAT-CGAAAATCATC-AATTTATGACGTTATATAATAAAATG-GAATCTGAAATTTTCATCTA
* *
57751336 TTGTCCTTTTTTTTCTATATATTCTCAGGAACCAAACAGTAGCTAAAATATCAGTTAAACTGACC
126 TTGTCCTTTTTTTTCTATATATTCTCAGGAACCAAACAGT-GAT-AAA-A-C--TGAAACTGA--
*
57751401 GGATACATACAATTCCAACAAAATTATCACAATGCCAAACAAAAGCAGATCGAAAAGAATCAATG
183 --ATACATACAATTCCAACAAAATTATCACAACGCCAAACAAAAGCAGATCGAAAAGAATCAAT-
** * *
57751466 T-ATGTTGTTATATAATAAAAC-AAGAATCTGAAATTTTCATATATAGTCTTCTTTTTTCCAGTA
245 TCA---TACTATATAATAAAACGAAG-ATCTGAAATTTTAATATATAGTCTTCTTGTTT-CA-TA
*
57751529 -TACTCTCAGGAACCAAACAGTAGCTAAACG
304 CTACTCTCAGAAACCAAACAGTAGCTAAACG
* * * * *
57751559 ATCAATTAAACTGAGAACGGAGACGTACATTTCCTACAAACTTATCGCAATGCTAAGCAAAATCA
1 ATCAATTAAACTGAGAACGAAGACATACAATTCCTACAAAATTATCACAATGCTAAGCAAAATCA
* * ** *
57751624 GATCAAAAATCATCAATTTATGACGTTATAAAATAAAACAAGAATCTGAAATTTTCATCTATAGT
66 GATCGAAAATCATCAATTTATGACGTTATATAATAAAA-TGGAATCTGAAATTTTCATCTATTGT
*
57751689 -CTTCTTTTTTCCAATATATTCTCAGGAACCAAAC
130 CCTT-TTTTTT-CTATATATTCTCAGGAACCAAAC
57751723 GATCAATTAA
Statistics
Matches: 427, Mismatches: 59, Indels: 45
0.80 0.11 0.08
Matches are distributed among these distances:
337 27 0.06
338 44 0.10
339 73 0.17
340 5 0.01
341 1 0.00
343 6 0.01
347 54 0.13
348 6 0.01
349 58 0.14
350 147 0.34
351 4 0.01
352 2 0.00
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (334 bp):
ATCAATTAAACTGAGAACGAAGACATACAATTCCTACAAAATTATCACAATGCTAAGCAAAATCA
GATCGAAAATCATCAATTTATGACGTTATATAATAAAATGGAATCTGAAATTTTCATCTATTGTC
CTTTTTTTTCTATATATTCTCAGGAACCAAACAGTGATAAAACTGAAACTGAATACATACAATTC
CAACAAAATTATCACAACGCCAAACAAAAGCAGATCGAAAAGAATCAATTCATACTATATAATAA
AACGAAGATCTGAAATTTTAATATATAGTCTTCTTGTTTCATACTACTCTCAGAAACCAAACAGT
AGCTAAACG
Done.