Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 ID=Chr13-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58321163
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 747533 characters in sequence are not A, C, G, or T
File 27 of 199
Found at i:7856530 original size:15 final size:15
Alignment explanation
Indices: 7856510--7856540 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7856500 AAAACAACAT
7856510 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
7856525 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
7856540 A
1 A
7856541 CTTACATAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.32, G:0.06, T:0.39
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:7866452 original size:27 final size:27
Alignment explanation
Indices: 7866422--7866478 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
7866412 CTGCTAAATG
*
7866422 GAGTTTGGACTGCTCATATG-GAGAATT
1 GAGTTTGAACTGCTCATA-GAGAGAATT
* *
7866449 GAGTTTGAATTGGTCATAGAGAGAATT
1 GAGTTTGAACTGCTCATAGAGAGAATT
7866476 GAG
1 GAG
7866479 GAGGGATATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.30, C:0.07, G:0.32, T:0.32
Consensus pattern (27 bp):
GAGTTTGAACTGCTCATAGAGAGAATT
Found at i:7867045 original size:27 final size:27
Alignment explanation
Indices: 7867005--7867242 Score: 338
Period size: 27 Copynumber: 8.9 Consensus size: 27
7866995 GTTATAACCA
* * *
7867005 AAATACCTCTATAGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACCG
* *
7867032 AAATACCCCCATAGGGTAGAATGACCA
1 AAATACCCCCATAGGGTAAAATGACCG
7867059 AAATACCCCCATAGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
* * *
7867086 AAATACCCTCATAGGATAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACCG
*
7867113 AAATA-CCCCATAGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACCG
* *
7867139 AAATACCCCTATAGGGTAAAATAACCG
1 AAATACCCCCATAGGGTAAAATGACCG
*
7867166 AAATA-CCCCATAGGGTAGAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
*
7867192 AAATACCCCCATAAGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
7867219 AAATA-CCCCATAGGGTAAAATGAC
1 AAATACCCCCATAGGGTAAAATGAC
7867243 TATTATACCC
Statistics
Matches: 188, Mismatches: 21, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
26 65 0.35
27 123 0.65
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGACCG
Found at i:7867145 original size:53 final size:53
Alignment explanation
Indices: 7867005--7867243 Score: 352
Period size: 53 Copynumber: 4.5 Consensus size: 53
7866995 GTTATAACCA
* * *
7867005 AAATACCTCTATAGGGTAAAATGACTGAAATACCCCCATAGGGTAGAATGACCA
1 AAATACC-CCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACCG
* * * *
7867059 AAATACCCCCATAGGGTAAAATGACCGAAATACCCTCATAGGATAAAATGACTG
1 AAATA-CCCCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACCG
* *
7867113 AAATACCCCATAGGGTAAAATGACTGAAATACCCCTATAGGGTAAAATAACCG
1 AAATACCCCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACCG
* * *
7867166 AAATACCCCATAGGGTAGAATGACCGAAATACCCCCATAAGGTAAAATGACCG
1 AAATACCCCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACCG
7867219 AAATACCCCATAGGGTAAAATGACT
1 AAATACCCCATAGGGTAAAATGACT
7867244 ATTATACCCC
Statistics
Matches: 164, Mismatches: 20, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
53 113 0.69
54 49 0.30
55 2 0.01
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (53 bp):
AAATACCCCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACCG
Found at i:7867153 original size:80 final size:80
Alignment explanation
Indices: 7867005--7867242 Score: 356
Period size: 80 Copynumber: 3.0 Consensus size: 80
7866995 GTTATAACCA
* *
7867005 AAATA-CCTCTATAGGGTAAAATGACTGAAATACCCCCATAGGGTAGAATGACCAAAATACCCCC
1 AAATACCCTC-ATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACCGAAATA-CCCC
7867069 ATAGGGTAAAATGACCG
64 ATAGGGTAAAATGACCG
* *
7867086 AAATACCCTCATAGGATAAAATGACTGAAATA-CCCCATAGGGTAAAATGACTGAAATACCCCTA
1 AAATACCCTCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACCGAAATACCCC-A
*
7867150 TAGGGTAAAATAACCG
65 TAGGGTAAAATGACCG
* * *
7867166 AAATACCC-CATAGGGTAGAATGACCGAAATACCCCCATAAGGTAAAATGACCGAAATACCCCAT
1 AAATACCCTCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCAT
7867230 AGGGTAAAATGAC
66 AGGGTAAAATGAC
7867243 TATTATACCC
Statistics
Matches: 143, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
79 38 0.27
80 75 0.52
81 26 0.18
82 4 0.03
ACGTcount: A:0.42, C:0.22, G:0.18, T:0.18
Consensus pattern (80 bp):
AAATACCCTCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCAT
AGGGTAAAATGACCG
Found at i:7869829 original size:4 final size:4
Alignment explanation
Indices: 7869820--7869871 Score: 104
Period size: 4 Copynumber: 13.0 Consensus size: 4
7869810 AAAGTCTAAT
7869820 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
7869868 TGTA
1 TGTA
7869872 CTGAAATAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 48 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TGTA
Found at i:7871276 original size:2 final size:2
Alignment explanation
Indices: 7871264--7871300 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
7871254 CTACTATGCC
7871264 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7871301 TATCACATGC
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7878162 original size:119 final size:119
Alignment explanation
Indices: 7877941--7878178 Score: 340
Period size: 119 Copynumber: 2.0 Consensus size: 119
7877931 CTAATACTAG
*
7877941 GCGATAATACGTGGTCAAATCGATAACTACTATTCGGCCGGCGTGTGCATAAAAAATAATTTTCT
1 GCGATAATACGTGGTCAAATCGATAACTACTATTCGGCCGACGTGTGCATAAAAAATAATTTTCT
*
7878006 AAAACAACTTTAAAGGTGCGATTTTACCTACATGCGAATAGTGTCAGTTATAAT
66 AAAACAACTTTAAAGGTGCGATTTTACCTACAAGCGAATAGTGTCAGTTATAAT
* * * *
7878060 GCGATATTATGTGGTCAAATCGATAAC-AGCTA-TCTGGTCGACGTGTGCGTAAAAAATAATTTT
1 GCGATAATACGTGGTCAAATCGATAACTA-CTATTC-GGCCGACGTGTGCATAAAAAATAATTTT
* *
7878123 CTAAAACAA-TATTAAAGGTGCGATTTTAACC-GCAAGCGAATAGTGTCAGTTGTAAT
64 CTAAAACAACT-TTAAAGGTGCGATTTT-ACCTACAAGCGAATAGTGTCAGTTATAAT
7878179 ATTTATAGTG
Statistics
Matches: 107, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
118 4 0.04
119 100 0.93
120 3 0.03
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (119 bp):
GCGATAATACGTGGTCAAATCGATAACTACTATTCGGCCGACGTGTGCATAAAAAATAATTTTCT
AAAACAACTTTAAAGGTGCGATTTTACCTACAAGCGAATAGTGTCAGTTATAAT
Found at i:7881127 original size:13 final size:13
Alignment explanation
Indices: 7881111--7881136 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7881101 TTATTTACCA
7881111 AAATTATTATAAT
1 AAATTATTATAAT
7881124 AAATTATTATAAT
1 AAATTATTATAAT
7881137 TATGATTTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AAATTATTATAAT
Found at i:7883402 original size:18 final size:18
Alignment explanation
Indices: 7883381--7883415 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7883371 ATTTTTTGGC
*
7883381 AAAATTACATAATAACAA
1 AAAATTACATAAAAACAA
*
7883399 AAAATTATATAAAAACA
1 AAAATTACATAAAAACA
7883416 CATAACCAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.69, C:0.09, G:0.00, T:0.23
Consensus pattern (18 bp):
AAAATTACATAAAAACAA
Found at i:7885540 original size:40 final size:40
Alignment explanation
Indices: 7885485--7885566 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
7885475 TCGATACATT
7885485 TCACAAGATTGACTTGTGGGAGACACCCGAAGAAGATTTA
1 TCACAAGATTGACTTGTGGGAGACACCCGAAGAAGATTTA
7885525 TCACAAGATTGACTTGTGGGAGACACCCGAAGAAGATTTA
1 TCACAAGATTGACTTGTGGGAGACACCCGAAGAAGATTTA
7885565 TC
1 TC
7885567 TAGATTCCAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.23
Consensus pattern (40 bp):
TCACAAGATTGACTTGTGGGAGACACCCGAAGAAGATTTA
Found at i:7886457 original size:14 final size:16
Alignment explanation
Indices: 7886433--7886465 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
7886423 TCCGAAGATA
7886433 ATAGATAA-TTTTTAC
1 ATAGATAATTTTTTAC
7886448 ATAG-TAATTTTTTAC
1 ATAGATAATTTTTTAC
7886463 ATA
1 ATA
7886466 AATCATTGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 3 0.18
15 14 0.82
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (16 bp):
ATAGATAATTTTTTAC
Found at i:7893050 original size:16 final size:16
Alignment explanation
Indices: 7893031--7893061 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7893021 AATTTTGGGA
*
7893031 AAAATAAATTAAAATT
1 AAAATAAAATAAAATT
7893047 AAAATAAAATAAAAT
1 AAAATAAAATAAAAT
7893062 AAACAATCCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAATAAAATAAAATT
Found at i:7893054 original size:5 final size:5
Alignment explanation
Indices: 7893031--7893064 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
7893021 AATTTTGGGA
*
7893031 AAAAT AAATT AAAATT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAA-T AAAAT AAAAT AAAAT AAA
7893065 CAATCCCTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (5 bp):
AAAAT
Found at i:7903776 original size:41 final size:41
Alignment explanation
Indices: 7903730--7903812 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
7903720 AATATTTTAT
**
7903730 CTTATCTTTTAGTAATTTATTAGAATAAGGGAATTATTTTC
1 CTTATCTTTTAGTAATTTATTAGAATAAGAAAATTATTTTC
*
7903771 CTTATCTTTTAGTAGTTTATTAGAATAAGAAAATTATTTTC
1 CTTATCTTTTAGTAATTTATTAGAATAAGAAAATTATTTTC
7903812 C
1 C
7903813 CAAATAGGTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.33, C:0.08, G:0.11, T:0.48
Consensus pattern (41 bp):
CTTATCTTTTAGTAATTTATTAGAATAAGAAAATTATTTTC
Found at i:7909624 original size:178 final size:174
Alignment explanation
Indices: 7909322--7909682 Score: 501
Period size: 178 Copynumber: 2.0 Consensus size: 174
7909312 GTATTCAGAT
7909322 ATTAGACGAAGCTCAATCAAAAGCAATATGAATAAAAAGACCACTTTATAAGCCAAAACATGTGA
1 ATTAGACGAAGCTCAATCAAAAGCAATATGAATAAAAAGACCACTTTATAAGCCAAAACA-GTGA
* * *
7909387 CATTTAATACAAAGGAAATGAAAGAAGGTATATCAGCAGCATTAAAAAGGAAAGAGATAAGAAGC
65 CATTTAATACAAAAGAAATGAAAGAAGGCATACCAGCAGCATTAAAAAGGAAAGAGATAAGAAGC
* *
7909452 GAACACAACTG-CCTAATATCAAGGGAAACAAATAAAAAGGAGAA
130 AAACACAACTGACCTAATACCAAGGGAAACAAATAAAAAGGAGAA
* *
7909496 ATTAGATGAAGCTCAATCAAAAGCAATATGAATAAAATAATGAAGACCATTTTATAAGCCAAAAC
1 ATTAGACGAAGCTCAATCAAAAGCAATATGAAT---A-AA--AAGACCACTTTATAAGCCAAAAC
*
7909561 A-TGACATTTAATACAAAAGAAATGAAAGAAGGCATACCAGTAGCATTAAAAAGGAAAGAGATAA
60 AGTGACATTTAATACAAAAGAAATGAAAGAAGGCATACCAGCAGCATTAAAAAGGAAAGAGATAA
**
7909625 GGGGCAAACACAACTGTCAACTACCTAATACCAAGGGAAACAAATAAAAAGGAGAA
125 GAAGCAAACACAACTG------ACCTAATACCAAGGGAAACAAATAAAAAGGAGAA
7909681 AT
1 AT
7909683 CTAGTACACA
Statistics
Matches: 164, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
174 32 0.20
177 1 0.01
178 74 0.45
180 23 0.14
185 34 0.21
ACGTcount: A:0.52, C:0.14, G:0.17, T:0.17
Consensus pattern (174 bp):
ATTAGACGAAGCTCAATCAAAAGCAATATGAATAAAAAGACCACTTTATAAGCCAAAACAGTGAC
ATTTAATACAAAAGAAATGAAAGAAGGCATACCAGCAGCATTAAAAAGGAAAGAGATAAGAAGCA
AACACAACTGACCTAATACCAAGGGAAACAAATAAAAAGGAGAA
Found at i:7915928 original size:17 final size:17
Alignment explanation
Indices: 7915906--7915938 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7915896 TTTGAAAAAG
7915906 GATAAATTCTTAATTTT
1 GATAAATTCTTAATTTT
*
7915923 GATAAATTTTTAATTT
1 GATAAATTCTTAATTT
7915939 AGTCCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.03, G:0.06, T:0.55
Consensus pattern (17 bp):
GATAAATTCTTAATTTT
Found at i:7921507 original size:15 final size:17
Alignment explanation
Indices: 7921479--7921514 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
7921469 TCTTTCTGTT
7921479 TTTTCTACTCTTT-CAA
1 TTTTCTACTCTTTCCAA
7921495 TTTTCTA-TCTTTCCAA
1 TTTTCTACTCTTTCCAA
7921511 TTTT
1 TTTT
7921515 GTGTCCATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.17, C:0.22, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTTCTACTCTTTCCAA
Found at i:7922262 original size:2 final size:2
Alignment explanation
Indices: 7922255--7922295 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
7922245 GGAAATACAG
7922255 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7922296 ACAATAGATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7924080 original size:46 final size:46
Alignment explanation
Indices: 7924013--7924110 Score: 189
Period size: 46 Copynumber: 2.2 Consensus size: 46
7924003 TTGTACCTAT
7924013 TTGTATGGGTTGATATAATATCTATCACAAATGAATATTGATAGTG
1 TTGTATGGGTTGATATAATATCTATCACAAATGAATATTGATAGTG
7924059 TTGTATGGGTTGATATAATATCTATCACAAATGAATATTGATAGTG
1 TTGTATGGGTTGATATAATATCTATCACAAATGAATATTGATAGTG
7924105 -TGTATG
1 TTGTATG
7924111 AACCTTTCTT
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 6 0.12
46 46 0.88
ACGTcount: A:0.34, C:0.06, G:0.20, T:0.40
Consensus pattern (46 bp):
TTGTATGGGTTGATATAATATCTATCACAAATGAATATTGATAGTG
Found at i:7924658 original size:97 final size:97
Alignment explanation
Indices: 7924567--7925090 Score: 794
Period size: 97 Copynumber: 5.4 Consensus size: 97
7924557 TTTAGATTTG
* *
7924567 AGGG-TTTTAAGGAAAAAAATCAAATAAATTAAGGTTTAGGGTTACTTGAGTAAATTAATTATAA
1 AGGGTTTTTAAGG-AAAAAATCAAATAAATTAGGGTTTGGGGTTACTTGAGTAAATTAATTATAA
7924631 ATTTTAAAAAAATTAGATTAGGGTTTAGTGTTT
65 ATTTTAAAAAAATTAGATTAGGGTTTAGTGTTT
* * * *
7924664 AGAGTTTTTAAGAAAAAAATCAAATAAATTAGAGTTTAGGGTTACTTGAGTAAATTAATTATAAA
1 AGGGTTTTTAAGGAAAAAATCAAATAAATTAGGGTTTGGGGTTACTTGAGTAAATTAATTATAAA
7924729 TTTTTAAAAAAATTAGATTAGGGTTTAGTGTTT
66 -TTTTAAAAAAATTAGATTAGGGTTTAGTGTTT
*
7924762 AGGGTTTTTAA-GAAAAAATCAAATAAATTAGGGTTTGGAGTTACTTGAGTAAATTAATTATAAA
1 AGGGTTTTTAAGGAAAAAATCAAATAAATTAGGGTTTGGGGTTACTTGAGTAAATTAATTATAAA
*
7924826 --TT-AAAAAATATATATTAGGGTTTAGTGTTT
66 TTTTAAAAAAAT-TAGATTAGGGTTTAGTGTTT
*
7924856 AGGGTTTTTAAGG-AAAAATACAAATAAATTAGGGTTTGGGGTTACTTGAGTAAATTAATTGTAA
1 AGGGTTTTTAAGGAAAAAAT-CAAATAAATTAGGGTTTGGGGTTACTTGAGTAAATTAATTATAA
* *
7924920 ATTTAAAAAAAATTAGATAAGGGTTTAGTGTTT
65 ATTTTAAAAAAATTAGATTAGGGTTTAGTGTTT
* * * *
7924953 AGGGTTTTTAAAGAAAAAATCAAATACATTTGGGTTTGGGGTTATTTGAGTAAATTAATTATAAA
1 AGGGTTTTTAAGGAAAAAATCAAATAAATTAGGGTTTGGGGTTACTTGAGTAAATTAATTATAAA
*
7925018 TTTTAAAAAAATTAGATTAGAGTTTAGTGTTT
66 TTTTAAAAAAATTAGATTAGGGTTTAGTGTTT
* *
7925050 AAGG-TTTCAAGG-AAAAATCAAATAAATTAGGGTTTGGGGTT
1 AGGGTTTTTAAGGAAAAAATCAAATAAATTAGGGTTTGGGGTT
7925091 TAGAGTTACT
Statistics
Matches: 390, Mismatches: 28, Indels: 20
0.89 0.06 0.05
Matches are distributed among these distances:
93 7 0.02
94 38 0.10
95 71 0.18
96 6 0.02
97 206 0.53
98 62 0.16
ACGTcount: A:0.41, C:0.02, G:0.19, T:0.37
Consensus pattern (97 bp):
AGGGTTTTTAAGGAAAAAATCAAATAAATTAGGGTTTGGGGTTACTTGAGTAAATTAATTATAAA
TTTTAAAAAAATTAGATTAGGGTTTAGTGTTT
Found at i:7924900 original size:192 final size:191
Alignment explanation
Indices: 7924567--7925090 Score: 772
Period size: 192 Copynumber: 2.7 Consensus size: 191
7924557 TTTAGATTTG
*
7924567 AGGG-TTTTAAGGAAAAAAATCAAATAAATTAAGGTTTAGGGTTACTTGAGTAAATTAATTATAA
1 AGGGTTTTTAA-G-AAAAAATCAAATAAATTAGGGTTT-GGGTTACTTGAGTAAATTAATTATAA
* *
7924631 ATTTTAAAAAAATTAGATTAGGGTTTAGTGTTTAGAGTTTTTAA-GAAAAAAATCAAATAAATTA
63 A-TTTAAAAAAATTAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGGAAAAATA-CAAATAAATTA
* * * *
7924695 GAGTTTAGGGTTACTTGAGTAAATTAATTATAAATTTTTAAAAAAATTAGATTAGGGTTTAGTGT
126 GGGTTTGGGGTTACTTGAGTAAATTAATTATAAA-TTTAAAAAAAATTAGATAAGGGTTTAGTGT
7924760 TT
190 TT
7924762 AGGGTTTTTAAGAAAAAATCAAATAAATTAGGGTTTGGAGTTACTTGAGTAAATTAATTATAAA-
1 AGGGTTTTTAAGAAAAAATCAAATAAATTAGGGTTTGG-GTTACTTGAGTAAATTAATTATAAAT
*
7924826 TT-AAAAAATATATATTAGGGTTTAGTGTTTAGGGTTTTTAAGGAAAAATACAAATAAATTAGGG
65 TTAAAAAAAT-TAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGGAAAAATACAAATAAATTAGGG
*
7924890 TTTGGGGTTACTTGAGTAAATTAATTGTAAATTTAAAAAAAATTAGATAAGGGTTTAGTGTTT
129 TTTGGGGTTACTTGAGTAAATTAATTATAAATTTAAAAAAAATTAGATAAGGGTTTAGTGTTT
* * *
7924953 AGGGTTTTTAAAGAAAAAATCAAATACATTTGGGTTTGGGGTTATTTGAGTAAATTAATTATAAA
1 AGGGTTTTT-AAGAAAAAATCAAATAAATTAGGGTTT-GGGTTACTTGAGTAAATTAATTATAAA
* * *
7925018 TTTTAAAAAAATTAGATTAGAGTTTAGTGTTTAAGG-TTTCAAGGAAAAAT-CAAATAAATTAGG
64 -TTTAAAAAAATTAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGGAAAAATACAAATAAATTAGG
7925081 GTTTGGGGTT
128 GTTTGGGGTT
7925091 TAGAGTTACT
Statistics
Matches: 304, Mismatches: 16, Indels: 21
0.89 0.05 0.06
Matches are distributed among these distances:
191 46 0.15
192 145 0.48
193 24 0.08
194 71 0.23
195 12 0.04
196 6 0.02
ACGTcount: A:0.41, C:0.02, G:0.19, T:0.37
Consensus pattern (191 bp):
AGGGTTTTTAAGAAAAAATCAAATAAATTAGGGTTTGGGTTACTTGAGTAAATTAATTATAAATT
TAAAAAAATTAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGGAAAAATACAAATAAATTAGGGTT
TGGGGTTACTTGAGTAAATTAATTATAAATTTAAAAAAAATTAGATAAGGGTTTAGTGTTT
Found at i:7925352 original size:126 final size:125
Alignment explanation
Indices: 7925122--7925540 Score: 644
Period size: 126 Copynumber: 3.3 Consensus size: 125
7925112 TTTGTTAATT
*
7925122 TAAAA-AAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTCCTGAAAAAATAAATTTGAGAAG
1 TAAAAGAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTTCTGAAAAAAT-AATTTGAGAAG
* *
7925186 ACGTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCATTGTCAGCAAAAGTAC
65 ACGTTTCTGAGAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTAC
* * *
7925247 TAAAAGAAGCTCCCACGTGGACGCTCTTTTGCTACAATAGTTTCTGAAAAAGTAATTCTAAGAAG
1 TAAAAGAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTTCTGAAAAAATAATT-TGAGAAG
*
7925312 ACGTTTCTGAGAAAATAGTGTCAAAAATGCTTCAAGCAGGATGCAATT-TCAGCAAAAGTAC
65 ACGTTTCTGAGAAAATAGTGTCAAAAACGCTTCAAGCAGGATGC-ATTGTCAGCAAAAGTAC
* * * *
7925373 TGAAAGAAGCTCCCACGTGGATGCTCTTTTGTTACAGTAGTTTCTGAAAAAATAATTTTGAGAAA
1 TAAAAGAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTTCTGAAAAAATAA-TTTGAGAAG
* * * *
7925438 ATGTTTCTAAGTAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAATGTCAGCAAAAGTAC
65 ACGTTTCTGAGAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTAC
*
7925499 TAAAAGAAGCTCCCACGTGGACGCTATTTTGCTACAGTAGTT
1 TAAAAGAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTT
7925541 CCAATTTGGC
Statistics
Matches: 266, Mismatches: 23, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
125 11 0.04
126 250 0.94
127 5 0.02
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (125 bp):
TAAAAGAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTTTCTGAAAAAATAATTTGAGAAGA
CGTTTCTGAGAAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTAC
Found at i:7929245 original size:30 final size:30
Alignment explanation
Indices: 7929211--7929273 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
7929201 TTGAAGTATC
* *
7929211 GGGCCCGGTGACTGTGTGGGTGCTGTTGCT
1 GGGCCCGGTGACTGTATGGGTGCTGTTGAT
* * *
7929241 GGGCCTGGTGATTGTATGGGTGTTGTTGAT
1 GGGCCCGGTGACTGTATGGGTGCTGTTGAT
7929271 GGG
1 GGG
7929274 TCTGCGTCGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.06, C:0.13, G:0.48, T:0.33
Consensus pattern (30 bp):
GGGCCCGGTGACTGTATGGGTGCTGTTGAT
Found at i:7932402 original size:103 final size:103
Alignment explanation
Indices: 7932159--7932413 Score: 323
Period size: 103 Copynumber: 2.5 Consensus size: 103
7932149 CACTAAGAAA
* * ** * * * *
7932159 TTTTTTATTGATTTTAGTGTTTCCACATGAAGAGGCGACACCCAAAAAGTAAAAAAAAAATTATT
1 TTTTTTACTGATTTTGGTGCCTCTACATGAAGAGGCGGCACCGAAAAATTAAAAAAAAAATTATT
*
7932224 GGTGTCACCACATTTAGAGTTAGCACCAGCGAAATAAT
66 GGTGCCACCACATTTAGAGTTAGCACCAGCGAAATAAT
* * *
7932262 TTTTTTACTGATTTTGGTGCCTCTACATAAAGAGGCGGCACCGAAAAATTCAAAAAAAAATTTGT
1 TTTTTTACTGATTTTGGTGCCTCTACATGAAGAGGCGGCACCGAAAAATT-AAAAAAAAAATTAT
* * * * *
7932327 TGGTGCCGCCACATTTAGAGTTGGCATCAGGGAAA-ATT
65 TGGTGCCACCACATTTAGAGTTAGCACCAGCGAAATAAT
**
7932365 TTTTTTACTGATTTTGGTGCCTCTACATGAAGAGGCGGCATTGAAAAAT
1 TTTTTTACTGATTTTGGTGCCTCTACATGAAGAGGCGGCACCGAAAAAT
7932414 GTGATAGCCC
Statistics
Matches: 131, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
103 89 0.68
104 42 0.32
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (103 bp):
TTTTTTACTGATTTTGGTGCCTCTACATGAAGAGGCGGCACCGAAAAATTAAAAAAAAAATTATT
GGTGCCACCACATTTAGAGTTAGCACCAGCGAAATAAT
Found at i:7933759 original size:23 final size:23
Alignment explanation
Indices: 7933733--7933823 Score: 155
Period size: 23 Copynumber: 4.0 Consensus size: 23
7933723 GTGTTATTGA
*
7933733 TCAGTGGTAGCTTCGGCTACGTT
1 TCAGTGGTAGCTTCGGCTACATT
*
7933756 TCAGTGGTAGCTTCGGCTACATA
1 TCAGTGGTAGCTTCGGCTACATT
*
7933779 ACAGTGGTAGCTTCGGCTACATT
1 TCAGTGGTAGCTTCGGCTACATT
7933802 TCAGTGGTAGCTTCGGCTACAT
1 TCAGTGGTAGCTTCGGCTACAT
7933824 ATAAGTGTTG
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 63 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.32
Consensus pattern (23 bp):
TCAGTGGTAGCTTCGGCTACATT
Found at i:7933787 original size:46 final size:46
Alignment explanation
Indices: 7933734--7933824 Score: 173
Period size: 46 Copynumber: 2.0 Consensus size: 46
7933724 TGTTATTGAT
*
7933734 CAGTGGTAGCTTCGGCTACGTTTCAGTGGTAGCTTCGGCTACATAA
1 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTCGGCTACATAA
7933780 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTCGGCTACATA
1 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTCGGCTACATA
7933825 TAAGTGTTGC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.31
Consensus pattern (46 bp):
CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTCGGCTACATAA
Found at i:7935434 original size:21 final size:21
Alignment explanation
Indices: 7935410--7935449 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
7935400 ACCTTTTCTA
*
7935410 AAGTTAAAAGTCAAAACTATT
1 AAGTTAAAAGGCAAAACTATT
7935431 AAGTTAAAAGGCAAAACTA
1 AAGTTAAAAGGCAAAACTA
7935450 CGTTATTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.55, C:0.10, G:0.12, T:0.23
Consensus pattern (21 bp):
AAGTTAAAAGGCAAAACTATT
Found at i:7936866 original size:34 final size:34
Alignment explanation
Indices: 7936812--7936898 Score: 95
Period size: 34 Copynumber: 2.6 Consensus size: 34
7936802 AGCATTTAAT
* * * * *
7936812 TATGCTTTTAACAGAACAATA-CGATATCAATTAG
1 TATGCTTATAACAGATCAATATAGATA-CAAATAA
* *
7936846 TATGCTTATAACAGCTCAATATAGTTACAAATAA
1 TATGCTTATAACAGATCAATATAGATACAAATAA
7936880 TATGCTTATAACAGATCAA
1 TATGCTTATAACAGATCAA
7936899 CTCAATACCA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
34 41 0.93
35 3 0.07
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.32
Consensus pattern (34 bp):
TATGCTTATAACAGATCAATATAGATACAAATAA
Found at i:7937825 original size:11 final size:11
Alignment explanation
Indices: 7937805--7937838 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
7937795 AATATGGTGT
*
7937805 AAAGAGAATAG
1 AAAGAGAATAA
*
7937816 AAAGAAAATAA
1 AAAGAGAATAA
7937827 AAAGAGAATAA
1 AAAGAGAATAA
7937838 A
1 A
7937839 TAAAAGGATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.09
Consensus pattern (11 bp):
AAAGAGAATAA
Found at i:7940300 original size:45 final size:45
Alignment explanation
Indices: 7940232--7940328 Score: 146
Period size: 45 Copynumber: 2.2 Consensus size: 45
7940222 ACAAAGTGAT
* *
7940232 AAGTG-TAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACA
1 AAGTGATAAGTGGTAGCTCTAGCTACACTTATCTGATC-AGGGACA
7940277 AAGTGATAAGTGGTAGC-CTAGCTACACTTATCTGATCAGGGACA
1 AAGTGATAAGTGGTAGCTCTAGCTACACTTATCTGATCAGGGACA
7940321 AA-TGATAA
1 AAGTGATAA
7940329 ATGATCATAC
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
43 6 0.12
44 8 0.16
45 24 0.49
46 11 0.22
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (45 bp):
AAGTGATAAGTGGTAGCTCTAGCTACACTTATCTGATCAGGGACA
Found at i:7942390 original size:16 final size:16
Alignment explanation
Indices: 7942369--7942425 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
7942359 TTCAATTTTA
7942369 AAAATAATCTAAATTT
1 AAAATAATCTAAATTT
7942385 AAAATAATCTAAATTT
1 AAAATAATCTAAATTT
* **
7942401 AAAATAACCTAAAGCT
1 AAAATAATCTAAATTT
7942417 AAAATAATC
1 AAAATAATC
7942426 CATCATCATA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.58, C:0.11, G:0.02, T:0.30
Consensus pattern (16 bp):
AAAATAATCTAAATTT
Found at i:7944149 original size:29 final size:29
Alignment explanation
Indices: 7944106--7944161 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
7944096 GATTTTCTTT
* *
7944106 TTTAATAGTATAGGGATTAAATTGATCCA
1 TTTAATAGTAAAGGGACTAAATTGATCCA
*
7944135 TTTAATAGTAAAGGGACTAATTTGATC
1 TTTAATAGTAAAGGGACTAAATTGATC
7944162 TAGTCCTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.38
Consensus pattern (29 bp):
TTTAATAGTAAAGGGACTAAATTGATCCA
Found at i:7959748 original size:16 final size:17
Alignment explanation
Indices: 7959711--7959748 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
7959701 TCATGAATAT
*
7959711 ATATTTTTTTGTTTTTA
1 ATATTTTTTTGTATTTA
7959728 A-ATTTTTTT-TATTTA
1 ATATTTTTTTGTATTTA
7959743 ATATTT
1 ATATTT
7959749 AGTAATTATG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 6 0.32
16 12 0.63
17 1 0.05
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (17 bp):
ATATTTTTTTGTATTTA
Found at i:7967833 original size:22 final size:23
Alignment explanation
Indices: 7967803--7967846 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
7967793 CTTCCACAGA
*
7967803 ATATGATTTTAGTGT-CACAAATT
1 ATATGATTTGA-TGTACACAAATT
7967826 ATAT-ATTTGATGTACACAAAT
1 ATATGATTTGATGTACACAAAT
7967847 AACATACCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 3 0.16
22 12 0.63
23 4 0.21
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (23 bp):
ATATGATTTGATGTACACAAATT
Found at i:7972092 original size:16 final size:15
Alignment explanation
Indices: 7972071--7972100 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
7972061 ATGAATATTT
7972071 AAAATTAATAAAATAG
1 AAAATTAA-AAAATAG
7972087 AAAATTAAAAAATA
1 AAAATTAAAAAATA
7972101 TAGGGCTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.23
Consensus pattern (15 bp):
AAAATTAAAAAATAG
Found at i:7974385 original size:21 final size:21
Alignment explanation
Indices: 7974359--7974399 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7974349 GACGAGTAAC
7974359 AGATCAGACAAATCATATCAT
1 AGATCAGACAAATCATATCAT
* * *
7974380 AGATCATACATATCGTATCA
1 AGATCAGACAAATCATATCA
7974400 CACCATATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.44, C:0.20, G:0.10, T:0.27
Consensus pattern (21 bp):
AGATCAGACAAATCATATCAT
Found at i:7975867 original size:25 final size:24
Alignment explanation
Indices: 7975822--7975869 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
7975812 GTCATTAAGG
* *
7975822 TTACCAATTCCAGCTCTTATGAGC
1 TTACCAATACCAGCTCGTATGAGC
7975846 TTACCAATACTCAGCTCGTATGAG
1 TTACCAATAC-CAGCTCGTATGAG
7975870 ATTATCGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (24 bp):
TTACCAATACCAGCTCGTATGAGC
Found at i:7981582 original size:38 final size:38
Alignment explanation
Indices: 7981539--7981626 Score: 140
Period size: 38 Copynumber: 2.3 Consensus size: 38
7981529 GTGCTTAGAG
* *
7981539 CTAGTCAAATAACGACGATTTCAATTGTGTGCCCAACA
1 CTAGTCAGATAACGACGATTTCAATTGTGTACCCAACA
* *
7981577 TTAGTCAGATAATGACGATTTCAATTGTGTACCCAACA
1 CTAGTCAGATAACGACGATTTCAATTGTGTACCCAACA
7981615 CTAGTCAGATAA
1 CTAGTCAGATAA
7981627 ACCAACAGAG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 45 1.00
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.28
Consensus pattern (38 bp):
CTAGTCAGATAACGACGATTTCAATTGTGTACCCAACA
Found at i:7981780 original size:36 final size:40
Alignment explanation
Indices: 7981644--7981777 Score: 170
Period size: 40 Copynumber: 3.5 Consensus size: 40
7981634 GAGATTTGCG
7981644 CTAGTCGGATAAACCGACGAGATCGAATGTGTGCCCAGCA
1 CTAGTCGGATAAACCGACGAGATCGAATGTGTGCCCAGCA
* **
7981684 TTAGTCGGATAAATGGACGAGATCGAATGTGTGCCC-GACA
1 CTAGTCGGATAAACCGACGAGATCGAATGTGTGCCCAG-CA
* * *
7981724 GTAGTCGAATAAACCGAC-A-AT-G-ATTTGTGCCCAGCA
1 CTAGTCGGATAAACCGACGAGATCGAATGTGTGCCCAGCA
7981760 CTAGTCGGATAAACCGAC
1 CTAGTCGGATAAACCGAC
7981778 AATTACATAC
Statistics
Matches: 82, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
36 27 0.33
37 2 0.02
38 2 0.02
39 2 0.02
40 49 0.60
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.20
Consensus pattern (40 bp):
CTAGTCGGATAAACCGACGAGATCGAATGTGTGCCCAGCA
Found at i:7983733 original size:19 final size:19
Alignment explanation
Indices: 7983692--7983753 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
7983682 ATTGAATTTG
* * *
7983692 AAAATTGGACTTGAGATCG
1 AAAATTGGACTCGAGAACC
7983711 AAAATTGGACTCGAGAACC
1 AAAATTGGACTCGAGAACC
*
7983730 AAAAATTGAGAC-CGAGACCC
1 -AAAATTG-GACTCGAGAACC
7983750 AAAA
1 AAAA
7983754 CTAGTTGAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
19 20 0.54
20 14 0.38
21 3 0.08
ACGTcount: A:0.45, C:0.18, G:0.21, T:0.16
Consensus pattern (19 bp):
AAAATTGGACTCGAGAACC
Found at i:7983736 original size:20 final size:20
Alignment explanation
Indices: 7983692--7983753 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
7983682 ATTGAATTTG
* * *
7983692 AAAATTGGACTTGAG-ATCG
1 AAAATTGGACTCGAGAACCA
7983711 AAAATTGGACTCGAGAACCA
1 AAAATTGGACTCGAGAACCA
*
7983731 AAAATTGAGAC-CGAGACCCA
1 AAAATTG-GACTCGAGAACCA
7983751 AAA
1 AAA
7983754 CTAGTTGAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
19 14 0.38
20 20 0.54
21 3 0.08
ACGTcount: A:0.45, C:0.18, G:0.21, T:0.16
Consensus pattern (20 bp):
AAAATTGGACTCGAGAACCA
Found at i:7984397 original size:31 final size:31
Alignment explanation
Indices: 7984350--7984459 Score: 125
Period size: 31 Copynumber: 3.5 Consensus size: 31
7984340 AAAAAAATAT
*
7984350 TATTTTAATAAATTTAATATTTATCTTGATAG
1 TATTTT-ATTAATTTAATATTTATCTTGATAG
* * *
7984382 TATTTTATTAATTTAATATTAAT-GTGAGA-
1 TATTTTATTAATTTAATATTTATCTTGATAG
** *
7984411 TATTAAATTTGATTTAATATTTATCTTGATAG
1 TATTTTA-TTAATTTAATATTTATCTTGATAG
7984443 TATTTTATTAATTTAAT
1 TATTTTATTAATTTAAT
7984460 GTTAGTAATT
Statistics
Matches: 62, Mismatches: 13, Indels: 7
0.76 0.16 0.09
Matches are distributed among these distances:
29 5 0.08
30 18 0.29
31 28 0.45
32 11 0.18
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.55
Consensus pattern (31 bp):
TATTTTATTAATTTAATATTTATCTTGATAG
Found at i:7987854 original size:2 final size:2
Alignment explanation
Indices: 7987847--7987879 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7987837 ATTCTGCATA
7987847 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7987880 AACCGTAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7997288 original size:27 final size:28
Alignment explanation
Indices: 7997220--7997290 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 28
7997210 AACCCCGTGA
* *
7997220 CAAGTGGTATCCGAG-CTAGATTCAAAC
1 CAAGTGGTATCCAAGCCAAGATTCAAAC
* *
7997247 CAAGTAAGTATCCAAGCCAAG-TTCGAAC
1 CAAGT-GGTATCCAAGCCAAGATTCAAAC
7997275 CAAGTGGTATCCAAGC
1 CAAGTGGTATCCAAGC
7997291 TGTTGGTTCG
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 15 0.41
28 19 0.51
29 3 0.08
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.20
Consensus pattern (28 bp):
CAAGTGGTATCCAAGCCAAGATTCAAAC
Found at i:7997325 original size:29 final size:29
Alignment explanation
Indices: 7997267--7997331 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
7997257 TCCAAGCCAA
* *
7997267 GTTCGAACCAAGTGGTATCCAAGCTGTTG
1 GTTCGAACCAAGTGATATCCAAGCTATTG
** *
7997296 GTTCGAACCAAGTGATATCTGAGTTATTG
1 GTTCGAACCAAGTGATATCCAAGCTATTG
7997325 GTTCGAA
1 GTTCGAA
7997332 GGCACCGTTG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (29 bp):
GTTCGAACCAAGTGATATCCAAGCTATTG
Found at i:8010372 original size:24 final size:24
Alignment explanation
Indices: 8010345--8010394 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
8010335 TTTTCTTCTT
*
8010345 TTAA-CTTTTAACTTTTCATCTTTC
1 TTAATCTTTTAACATTT-ATCTTTC
* *
8010369 TTAATTTTTTACCATTTATCTTTC
1 TTAATCTTTTAACATTTATCTTTC
8010393 TT
1 TT
8010395 TTAACCCCTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.20, C:0.18, G:0.00, T:0.62
Consensus pattern (24 bp):
TTAATCTTTTAACATTTATCTTTC
Found at i:8012841 original size:9 final size:9
Alignment explanation
Indices: 8012827--8012902 Score: 89
Period size: 9 Copynumber: 8.4 Consensus size: 9
8012817 TTTGGTTAAA
8012827 AATTAACCG
1 AATTAACCG
*
8012836 AATTAACCT
1 AATTAACCG
*
8012845 AATTAACCA
1 AATTAACCG
*
8012854 AATTACCCG
1 AATTAACCG
*
8012863 AATTAACTG
1 AATTAACCG
* *
8012872 ATTTACCCG
1 AATTAACCG
*
8012881 AATTACCCG
1 AATTAACCG
8012890 AATTAACCG
1 AATTAACCG
8012899 AATT
1 AATT
8012903 GAATCACTAC
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 56 1.00
ACGTcount: A:0.41, C:0.24, G:0.08, T:0.28
Consensus pattern (9 bp):
AATTAACCG
Found at i:8013025 original size:18 final size:18
Alignment explanation
Indices: 8012999--8013048 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
8012989 TTTATGATTA
* *
8012999 GGTTGGGTTGGGTAATTG
1 GGTTTGGTTGGATAATTG
* *
8013017 GGTTTGGTTGAATACTTG
1 GGTTTGGTTGGATAATTG
8013035 GGTTTGGATTGGAT
1 GGTTTGG-TTGGAT
8013049 TTAGGTGAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
18 21 0.81
19 5 0.19
ACGTcount: A:0.14, C:0.02, G:0.42, T:0.42
Consensus pattern (18 bp):
GGTTTGGTTGGATAATTG
Found at i:8015789 original size:25 final size:25
Alignment explanation
Indices: 8015761--8015877 Score: 110
Period size: 25 Copynumber: 4.7 Consensus size: 25
8015751 CTCCGATCTG
* *
8015761 AATAACAAGAAGCTCATGCAAGCTA
1 AATAACGAGAAGCTCATGCGAGCTA
* * *
8015786 AATAACGGGAAGCTCAAGCGAGCTG
1 AATAACGAGAAGCTCATGCGAGCTA
* * *
8015811 AATATCGAGAAGCTCATACGAGCTG
1 AATAACGAGAAGCTCATGCGAGCTA
* *
8015836 TATAACGGGAAGCTCATGCGAGCTA
1 AATAACGAGAAGCTCATGCGAGCTA
* *
8015861 TAA-ATCGGGAAGCTCAT
1 -AATAACGAGAAGCTCAT
8015878 ATGAGCTGTG
Statistics
Matches: 75, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
25 74 0.99
26 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.25, T:0.18
Consensus pattern (25 bp):
AATAACGAGAAGCTCATGCGAGCTA
Found at i:8015857 original size:50 final size:50
Alignment explanation
Indices: 8015723--8015886 Score: 161
Period size: 50 Copynumber: 3.3 Consensus size: 50
8015713 GTACATGTAT
* * * * * * * *
8015723 GCTCACACGAGTTGTA-AACGGAAAGCTCCTCCGATCTGAATAACAAGAA
1 GCTCATACGAGCTGTATAACGGGAAGCTCATGCGAGCTGAATATCGAGAA
* * ** *
8015772 GCTCATGCAAGCTAAATAACGGGAAGCTCAAGCGAGCTGAATATCGAGAA
1 GCTCATACGAGCTGTATAACGGGAAGCTCATGCGAGCTGAATATCGAGAA
* *
8015822 GCTCATACGAGCTGTATAACGGGAAGCTCATGCGAGCT-ATAAATCGGGAA
1 GCTCATACGAGCTGTATAACGGGAAGCTCATGCGAGCTGA-ATATCGAGAA
*
8015872 GCTCATATGAGCTGT
1 GCTCATACGAGCTGT
8015887 GGTGTGTCCA
Statistics
Matches: 92, Mismatches: 21, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
49 11 0.12
50 81 0.88
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (50 bp):
GCTCATACGAGCTGTATAACGGGAAGCTCATGCGAGCTGAATATCGAGAA
Found at i:8016233 original size:17 final size:17
Alignment explanation
Indices: 8016211--8016244 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8016201 GATCTTACTC
8016211 TAAATTAATAATTTTAT
1 TAAATTAATAATTTTAT
* *
8016228 TAAATTTATTATTTTAT
1 TAAATTAATAATTTTAT
8016245 ACAATAAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TAAATTAATAATTTTAT
Found at i:8019506 original size:24 final size:24
Alignment explanation
Indices: 8019442--8019511 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
8019432 TTCGTTATAA
*
8019442 TTAACTTTTCACCTTTCATCTTCC
1 TTAACTTTTCACCTTTTATCTTCC
* **
8019466 TTAACTTTTCACTTTTTATCTTTT
1 TTAACTTTTCACCTTTTATCTTCC
*
8019490 TTAACTCTTCACCTTTTTATCT
1 TTAACTTTTCACC-TTTTATCT
8019512 CATTGTATCC
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
24 31 0.79
25 8 0.21
ACGTcount: A:0.17, C:0.26, G:0.00, T:0.57
Consensus pattern (24 bp):
TTAACTTTTCACCTTTTATCTTCC
Found at i:8019692 original size:7 final size:7
Alignment explanation
Indices: 8019680--8019711 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
8019670 ATTAATTTAC
8019680 ATTTAAT
1 ATTTAAT
8019687 ATTTAAT
1 ATTTAAT
8019694 ATTTAAT
1 ATTTAAT
8019701 ATTTAAT
1 ATTTAAT
8019708 ATTT
1 ATTT
8019712 TTTTTTCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
ATTTAAT
Found at i:8026142 original size:20 final size:21
Alignment explanation
Indices: 8026117--8026160 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
8026107 AGAAAGTTGC
8026117 AAAAATATAA-AAAAATT-TAA
1 AAAAAT-TAATAAAAATTGTAA
*
8026137 AAAAATTAATTAAAATTGTAA
1 AAAAATTAATAAAAATTGTAA
8026158 AAA
1 AAA
8026161 TTATAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 3 0.14
20 12 0.57
21 6 0.29
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.27
Consensus pattern (21 bp):
AAAAATTAATAAAAATTGTAA
Found at i:8027148 original size:26 final size:26
Alignment explanation
Indices: 8027116--8027165 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
8027106 ATACTAATAA
8027116 TTATATTT-T-ATTCAAACTGAAAATTG
1 TTATATTTATAATT-AAACT-AAAATTG
8027142 TTATATTTATAATTAAACTAAAAT
1 TTATATTTATAATTAAACTAAAAT
8027166 CAAAATTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
26 13 0.59
27 6 0.27
28 3 0.14
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (26 bp):
TTATATTTATAATTAAACTAAAATTG
Found at i:8032292 original size:26 final size:24
Alignment explanation
Indices: 8032225--8032292 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 24
8032215 ATTTAAATAA
*
8032225 AAATAATTTAAATATT--TTATTT
1 AAATAATTTAAATATTAATTAATT
* *
8032247 AAATAATTAAAATAACTAATTAATT
1 AAATAATTTAAAT-ATTAATTAATT
8032272 AACATAATATTAAATATTAAT
1 AA-ATAAT-TTAAATATTAAT
8032293 AAAAATGGTT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
22 12 0.33
23 2 0.06
25 7 0.19
26 10 0.28
27 5 0.14
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (24 bp):
AAATAATTTAAATATTAATTAATT
Found at i:8039074 original size:11 final size:11
Alignment explanation
Indices: 8039058--8039136 Score: 51
Period size: 11 Copynumber: 7.4 Consensus size: 11
8039048 ATTTTTTTAA
8039058 TTTTAAAATAC
1 TTTTAAAATAC
*
8039069 TTTTAAAGTAC
1 TTTTAAAATAC
*
8039080 TTTTTTTAAAA-AA
1 ---TTTTAAAATAC
*
8039093 TTTT-TAAT--
1 TTTTAAAATAC
*
8039101 TT-TAAAATAT
1 TTTTAAAATAC
*
8039111 TTTTAAAATAT
1 TTTTAAAATAC
8039122 TTTTAAAATAC
1 TTTTAAAATAC
8039133 TTTT
1 TTTT
8039137 TTAATTTTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
7 1 0.02
8 5 0.09
9 2 0.04
10 6 0.11
11 32 0.59
13 1 0.02
14 7 0.13
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.54
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:8039105 original size:17 final size:17
Alignment explanation
Indices: 8039083--8039116 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8039073 AAAGTACTTT
8039083 TTTTAAAAAATTTTTAA
1 TTTTAAAAAATTTTTAA
*
8039100 TTTTAAAATATTTTTAA
1 TTTTAAAAAATTTTTAA
8039117 AATATTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTTAAAAAATTTTTAA
Found at i:8039153 original size:28 final size:29
Alignment explanation
Indices: 8039122--8039182 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 29
8039112 TTTAAAATAT
*
8039122 TTTTAAAATACTTTTT-TAAT-TTTTTTAA
1 TTTTAAAATA-TTTTTAAAATATTTTTTAA
*
8039150 TTTTAAAATATTTTTAAAATATTTTTTTA
1 TTTTAAAATATTTTTAAAATATTTTTTAA
8039179 TTTT
1 TTTT
8039183 TGTTTTAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 5 0.17
28 13 0.45
29 11 0.38
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.66
Consensus pattern (29 bp):
TTTTAAAATATTTTTAAAATATTTTTTAA
Found at i:8039164 original size:11 final size:11
Alignment explanation
Indices: 8039150--8039175 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
8039140 ATTTTTTTAA
8039150 TTTTAAAATAT
1 TTTTAAAATAT
8039161 TTTTAAAATAT
1 TTTTAAAATAT
8039172 TTTT
1 TTTT
8039176 TTATTTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:8039168 original size:50 final size:52
Alignment explanation
Indices: 8039058--8039175 Score: 177
Period size: 50 Copynumber: 2.3 Consensus size: 52
8039048 ATTTTTTTAA
* *
8039058 TTTTAAAATACTTTTAAAGTACTTTTTTTAAAAAATTTTTAATTTTAAAATAT
1 TTTTAAAATATTTTTAAAATACTTTTTTT-AAAAATTTTTAATTTTAAAATAT
**
8039111 TTTTAAAATATTTTTAAAATAC-TTTTTT-AATTTTTTTAATTTTAAAATAT
1 TTTTAAAATATTTTTAAAATACTTTTTTTAAAAATTTTTAATTTTAAAATAT
8039161 TTTTAAAATATTTTT
1 TTTTAAAATATTTTT
8039176 TTATTTTTGT
Statistics
Matches: 61, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
50 35 0.57
52 6 0.10
53 20 0.33
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.58
Consensus pattern (52 bp):
TTTTAAAATATTTTTAAAATACTTTTTTTAAAAATTTTTAATTTTAAAATAT
Found at i:8039176 original size:39 final size:41
Alignment explanation
Indices: 8039111--8039201 Score: 141
Period size: 39 Copynumber: 2.2 Consensus size: 41
8039101 TTTAAAATAT
8039111 TTTTAAAATATTTTTAAAATACTTTTTTA-ATTT-TTTTAA
1 TTTTAAAATATTTTTAAAATACTTTTTTATATTTGTTTTAA
* *
8039150 TTTTAAAATATTTTTAAAATATTTTTTTATTTTTGTTTTAA
1 TTTTAAAATATTTTTAAAATACTTTTTTATATTTGTTTTAA
8039191 TTCTTAAAATA
1 TT-TTAAAATA
8039202 AATTTTTGGT
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
39 28 0.60
40 3 0.06
41 8 0.17
42 8 0.17
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (41 bp):
TTTTAAAATATTTTTAAAATACTTTTTTATATTTGTTTTAA
Found at i:8039893 original size:3 final size:3
Alignment explanation
Indices: 8039885--8039913 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
8039875 AAATTAGTCT
8039885 TGA TGA TGA TGA TGA TGA TGA TGA TGA TG
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TG
8039914 TTGAGACAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.34, T:0.34
Consensus pattern (3 bp):
TGA
Found at i:8055705 original size:43 final size:42
Alignment explanation
Indices: 8055658--8055778 Score: 111
Period size: 43 Copynumber: 2.8 Consensus size: 42
8055648 TATCGTACCA
* **
8055658 ATGCCAT-GTCCCAGAC-ATAGTCTTACATGGAAATCTCGTATCG
1 ATGCCATAG-CCCA-ACTATAGTCTTACA-CGAAATCTCAAATCG
*
8055701 ATGCCAATAGCCCAACTATGGTCTTACACGAAATCTCAAATCG
1 ATGCC-ATAGCCCAACTATAGTCTTACACGAAATCTCAAATCG
* * * *
8055744 ATGCCAATAGCTCAGCTATGGTATTACACGAAATC
1 ATGCC-ATAGCCCAACTATAGTCTTACACGAAATC
8055779 ACACCTCGGA
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
43 51 0.75
44 16 0.24
45 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (42 bp):
ATGCCATAGCCCAACTATAGTCTTACACGAAATCTCAAATCG
Found at i:8057005 original size:40 final size:40
Alignment explanation
Indices: 8056956--8057043 Score: 158
Period size: 40 Copynumber: 2.2 Consensus size: 40
8056946 AAATTAATAT
*
8056956 ATTAGAATGTACTCAAATCCCTCGTTCAATCCAAACTGCGC
1 ATTA-AATGTACTCAAATCCCGCGTTCAATCCAAACTGCGC
8056997 ATTAAATGTACTCAAATCCCGCGTTCAATCCAAACTGCGC
1 ATTAAATGTACTCAAATCCCGCGTTCAATCCAAACTGCGC
8057037 ATTAAAT
1 ATTAAAT
8057044 TCAATAATAT
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
40 42 0.91
41 4 0.09
ACGTcount: A:0.34, C:0.27, G:0.11, T:0.27
Consensus pattern (40 bp):
ATTAAATGTACTCAAATCCCGCGTTCAATCCAAACTGCGC
Found at i:8059063 original size:28 final size:28
Alignment explanation
Indices: 8059022--8059079 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
8059012 TTCCTACAAT
*
8059022 TTATCTCTTTTCTCTCTG-T-GTTTTCTC
1 TTATCTCTTCTCTCTC-GATAGTTTTCTC
8059049 TTATCGTCTTCTCTCTCGATAGTTTTCTC
1 TTATC-TCTTCTCTCTCGATAGTTTTCTC
8059078 TT
1 TT
8059080 TTGTATTTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
27 6 0.22
28 11 0.41
29 10 0.37
ACGTcount: A:0.07, C:0.26, G:0.09, T:0.59
Consensus pattern (28 bp):
TTATCTCTTCTCTCTCGATAGTTTTCTC
Found at i:8068655 original size:2 final size:2
Alignment explanation
Indices: 8068648--8068674 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8068638 ATCTATATTA
8068648 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
8068675 ATAGTTTAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8070739 original size:18 final size:17
Alignment explanation
Indices: 8070711--8070745 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8070701 ATTATTAAGA
*
8070711 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8070728 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8070746 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8070894 original size:157 final size:157
Alignment explanation
Indices: 8070699--8071015 Score: 607
Period size: 157 Copynumber: 2.0 Consensus size: 157
8070689 ATAAGAATAT
8070699 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
*
8070764 AAATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
8070829 TAATAATTTACCAAAACAAATTTCTGC
131 TAATAATTTACCAAAACAAATTTATGC
8070856 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
8070921 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
8070986 TAATCATTTACCAAAACAAATTTATGC
131 TAATAATTTACCAAAACAAATTTATGC
8071013 TAA
1 TAA
8071016 GGGTATTCTA
Statistics
Matches: 157, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
157 157 1.00
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTATGC
Found at i:8070896 original size:18 final size:17
Alignment explanation
Indices: 8070868--8070902 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8070858 ATTATTAAGA
*
8070868 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8070885 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8070903 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8070936 original size:75 final size:75
Alignment explanation
Indices: 8070700--8070938 Score: 200
Period size: 75 Copynumber: 3.1 Consensus size: 75
8070690 TAAGAATATT
8070700 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
8070765 AATATGATTA
66 AATATGATTA
* ** * * * * *
8070775 AATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATA-A--CAATAATAATT
1 AATTATTAAGAATT-TTATT-A-AA--TTA-TATATTTTAATTAA-AATATATTTAATAATAATT
**** * * *
8070837 -TACCAAAACAAAT-TTCTGCT
59 AT-GTTTAA-ATATGAT-T--A
8070857 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
8070922 AATATGATTA
66 AATATGATTA
8070932 AATTATT
1 AATTATT
8070939 TATTATTGAT
Statistics
Matches: 117, Mismatches: 30, Indels: 34
0.65 0.17 0.19
Matches are distributed among these distances:
75 22 0.19
76 16 0.14
77 8 0.07
78 16 0.14
79 16 0.14
80 8 0.07
81 16 0.14
82 15 0.13
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (75 bp):
AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
AATATGATTA
Found at i:8071155 original size:16 final size:16
Alignment explanation
Indices: 8071136--8071205 Score: 104
Period size: 16 Copynumber: 4.4 Consensus size: 16
8071126 TTGATTTGCT
* *
8071136 ATTACACCTCTATTCT
1 ATTACACCTCTAATCC
8071152 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
8071168 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
8071184 AATACACCTCTAATCC
1 ATTACACCTCTAATCC
*
8071200 AATACA
1 ATTACA
8071206 GCGAACCAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 51 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:8071156 original size:45 final size:44
Alignment explanation
Indices: 8071060--8071157 Score: 115
Period size: 45 Copynumber: 2.2 Consensus size: 44
8071050 CTATTACACC
* * *
8071060 TCTATTCCATTCAACCAAACACAAGATTACTATTACGCCTTTAT
1 TCTATTACATTCAACCAAACACAAGATTACTATTACACCTCTAT
* *** *
8071104 TCCATTACATTCAACCAAACATTTGATTTGCTATTACACCTCTAT
1 TCTATTACATTCAACCAAACACAAGA-TTACTATTACACCTCTAT
8071149 TCTATTACA
1 TCTATTACA
8071158 CCTCTAATCC
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
44 21 0.48
45 23 0.52
ACGTcount: A:0.33, C:0.27, G:0.04, T:0.37
Consensus pattern (44 bp):
TCTATTACATTCAACCAAACACAAGATTACTATTACACCTCTAT
Found at i:8072592 original size:19 final size:19
Alignment explanation
Indices: 8072564--8072603 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
8072554 ATGAAAGAAA
*
8072564 TTAC-ATTTTTTTATAATTT
1 TTACAATTTTTTTA-CATTT
8072583 TTACAATTTTTTTACATTT
1 TTACAATTTTTTTACATTT
8072602 TT
1 TT
8072604 GTAATAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (19 bp):
TTACAATTTTTTTACATTT
Found at i:8079524 original size:32 final size:32
Alignment explanation
Indices: 8079483--8079550 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
8079473 TTTGCATGGT
8079483 TAACACAAACATTTCTAGGAATAAAGGAGAAA
1 TAACACAAACATTTCTAGGAATAAAGGAGAAA
8079515 TAACACAAACATTTCTAGGAATAAAGGAGAAA
1 TAACACAAACATTTCTAGGAATAAAGGAGAAA
8079547 TAAC
1 TAAC
8079551 CTTACTCTCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.53, C:0.13, G:0.15, T:0.19
Consensus pattern (32 bp):
TAACACAAACATTTCTAGGAATAAAGGAGAAA
Found at i:8081703 original size:35 final size:35
Alignment explanation
Indices: 8081662--8081731 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
8081652 ATTAAACATA
*
8081662 GTCTTTTGAACAAATAAAATGATGAAATAATAATG
1 GTCTTTTGAACAAATAAAACGATGAAATAATAATG
8081697 GTCTTTTGAACAAATAAAACGATGAAATAATAATG
1 GTCTTTTGAACAAATAAAACGATGAAATAATAATG
8081732 TAGAATGCGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.49, C:0.07, G:0.14, T:0.30
Consensus pattern (35 bp):
GTCTTTTGAACAAATAAAACGATGAAATAATAATG
Found at i:8082344 original size:19 final size:18
Alignment explanation
Indices: 8082309--8082359 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 18
8082299 AAATTTAATC
* *
8082309 AAAT-ATAATAATGATAA
1 AAATAATAATAGTAATAA
*
8082326 CAATAATAAATAGTAATAA
1 AAATAAT-AATAGTAATAA
8082345 AAATAATAATAGTAA
1 AAATAATAATAGTAA
8082360 ATTAATTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
17 3 0.11
18 10 0.36
19 15 0.54
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (18 bp):
AAATAATAATAGTAATAA
Found at i:8082350 original size:25 final size:24
Alignment explanation
Indices: 8082304--8082365 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
8082294 AATAGAAATT
**
8082304 TAATCAAATATAATAATGATAACAA
1 TAAT-AAATATAATAAAAATAACAA
*
8082329 TAATAAATAGTAATAAAAATAATAA
1 TAATAAATA-TAATAAAAATAACAA
*
8082354 TAGTAAAT-TAAT
1 TAATAAATATAAT
8082366 TAATAGCAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 4 0.12
24 5 0.16
25 23 0.72
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (24 bp):
TAATAAATATAATAAAAATAACAA
Found at i:8085395 original size:9 final size:9
Alignment explanation
Indices: 8085346--8085395 Score: 55
Period size: 9 Copynumber: 5.6 Consensus size: 9
8085336 TTTGGTTAAA
*
8085346 AATTAACCA
1 AATTAACCG
*
8085355 AATTAATCG
1 AATTAACCG
8085364 AATTAACCG
1 AATTAACCG
*
8085373 AATTACCCG
1 AATTAACCG
* *
8085382 GATTAATCG
1 AATTAACCG
8085391 AATTA
1 AATTA
8085396 CCCACATTAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.44, C:0.18, G:0.10, T:0.28
Consensus pattern (9 bp):
AATTAACCG
Found at i:8085404 original size:18 final size:18
Alignment explanation
Indices: 8085365--8085406 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
8085355 AATTAATCGA
**
8085365 ATTAACCGAATTACCCGG
1 ATTAACCGAATTACCCAC
*
8085383 ATTAATCGAATTACCCAC
1 ATTAACCGAATTACCCAC
8085401 ATTAAC
1 ATTAAC
8085407 TGAAAATTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.38, C:0.26, G:0.10, T:0.26
Consensus pattern (18 bp):
ATTAACCGAATTACCCAC
Found at i:8093657 original size:14 final size:14
Alignment explanation
Indices: 8093634--8093673 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
8093624 ACAGAAAAGT
*
8093634 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
8093648 AAATCATTTTACGG
1 AAAACATTTTACAG
8093662 AAAACATTTTAC
1 AAAACATTTTAC
8093674 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:8093658 original size:34 final size:35
Alignment explanation
Indices: 8093599--8093665 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
8093589 CAAACAGCAG
* * *
8093599 AAAATATTTTCTAGTAAATTATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
8093634 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
8093666 CATTTTACTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.46, C:0.10, G:0.09, T:0.34
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:8094354 original size:40 final size:40
Alignment explanation
Indices: 8094304--8094396 Score: 118
Period size: 40 Copynumber: 2.3 Consensus size: 40
8094294 GATAAAGCAG
8094304 GAAAACGCTTCCTCAATG-AAGCACTTTGTCCACGTGGACGA
1 GAAAACGCTTCCTCAA-GAAAGCACTTTGTCCACGTGGA-GA
* ** *
8094345 -AAAACGCTTCTTCAAGAAAGCGTTTTGTCCACGTGGATA
1 GAAAACGCTTCCTCAAGAAAGCACTTTGTCCACGTGGAGA
8094384 GAAAACGCTTCCT
1 GAAAACGCTTCCT
8094397 TGAGGTTTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
39 2 0.04
40 43 0.96
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (40 bp):
GAAAACGCTTCCTCAAGAAAGCACTTTGTCCACGTGGAGA
Found at i:8098546 original size:16 final size:17
Alignment explanation
Indices: 8098522--8098553 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
8098512 TCTATTATAT
8098522 TTTTAAATTATTCCAAG
1 TTTTAAATTATTCCAAG
8098539 TTTT-AATTATTCCAA
1 TTTTAAATTATTCCAA
8098554 CTTATGGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.34, C:0.12, G:0.03, T:0.50
Consensus pattern (17 bp):
TTTTAAATTATTCCAAG
Found at i:8106281 original size:17 final size:17
Alignment explanation
Indices: 8106249--8106299 Score: 57
Period size: 19 Copynumber: 2.9 Consensus size: 17
8106239 GTTTTCATGA
* *
8106249 AAAACAAAACAAAAAAT
1 AAAATAAAATAAAAAAT
*
8106266 ATAATAAAAAATAAAAAAT
1 A-AA-ATAAAATAAAAAAT
8106285 AAAATAAAATAAAAA
1 AAAATAAAATAAAAA
8106300 GTTCTGAGGG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 12 0.41
18 4 0.14
19 13 0.45
ACGTcount: A:0.82, C:0.04, G:0.00, T:0.14
Consensus pattern (17 bp):
AAAATAAAATAAAAAAT
Found at i:8106281 original size:19 final size:19
Alignment explanation
Indices: 8106254--8106293 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
8106244 CATGAAAAAC
*
8106254 AAAACAAAAAATATAATAA
1 AAAACAAAAAATAAAATAA
*
8106273 AAAATAAAAAATAAAATAA
1 AAAACAAAAAATAAAATAA
8106292 AA
1 AA
8106294 TAAAAAGTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (19 bp):
AAAACAAAAAATAAAATAA
Found at i:8106281 original size:24 final size:24
Alignment explanation
Indices: 8106248--8106299 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
8106238 TGTTTTCATG
*
8106248 AAAAACAAAACAA-AAAATATAATA
1 AAAAACAAAA-AATAAAATAAAATA
*
8106272 AAAAATAAAAAATAAAATAAAATA
1 AAAAACAAAAAATAAAATAAAATA
8106296 AAAA
1 AAAA
8106300 GTTCTGAGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 2 0.08
24 23 0.92
ACGTcount: A:0.83, C:0.04, G:0.00, T:0.13
Consensus pattern (24 bp):
AAAAACAAAAAATAAAATAAAATA
Found at i:8108869 original size:455 final size:455
Alignment explanation
Indices: 8108007--8108881 Score: 1581
Period size: 455 Copynumber: 1.9 Consensus size: 455
8107997 GTCAGGGTCA
*
8108007 CAGATATTTTGGCCTAATATGTAATTTTATTTTTCTCACCAAAGTTTATCTCTCCAAATTCTGCT
1 CAGATATTTTAGCCTAATATGTAATTTTATTTTTCTCACCAAAGTTTATCTCTCCAAATTCTGCT
8108072 TGGAATTAAAAGGACAAATATTAAATTGAGGTTAATGACTCATTTAATTCAAAAGTTAATGACTC
66 TGGAATTAAAAGGACAAATATTAAATTGAGGTTAATGACTCATTTAATTCAAAAGTTAATGACTC
* *
8108137 CTTAATTCACAGATGTTATTAGCTCCATTAGTCAAAATTTCTAAAAGTTCTTTTAATTTTTGAAT
131 CTCAATTCACAAATGTTATTAGCTCCATTAGTCAAAATTTCTAAAAGTTCTTTTAATTTTTGAAT
*
8108202 TTTCTTTAAAACCAAATAATTTGCAGGAAAAGATATACAAACTAAAATTTCAGATATTTCAAGAT
196 TTTCTTTAAAACCAAATAATTTGCAGGAAAAGATATACAAACTAAAATTTCAGAAATTTCAAGAT
* *
8108267 CTTTTCCCTGCATATTTCGAACCTATTTTCAGTGATAGAATAAGGTAAGGCTACAGTTCGTTGAT
261 CTTTTCCCTGCATATTTCGAACCTATTTTCAGTGATAGAAGAAAGTAAGGCTACAGTTCGTTGAT
*
8108332 CACTGTAGCCGTGCTACTGCCGTGCTCATCTCATTGTTGTATCTTGGGAGACAGTCGACCAACAT
326 CACTATAGCCGTGCTACTGCCGTGCTCATCTCATTGTTGTATCTTGGGAGACAGTCGACCAACAT
*
8108397 TTCTCCAGCAGCAAAGGAGCGACCGAATCTATGAAAATAGGTTATTTTATTTTATTTTAGGTTTG
391 TTCTCCAGCACCAAAGGAGCGACCGAATCTATGAAAATAGGTTATTTTATTTTATTTTAGGTTTG
* * *
8108462 CAGATATTTTAGCCTAATATGTACTTTTATTTTTCTCACCAGAGTTTATCTCTTCAAATTCTGCT
1 CAGATATTTTAGCCTAATATGTAATTTTATTTTTCTCACCAAAGTTTATCTCTCCAAATTCTGCT
*
8108527 TGGAATTAAAAGGACAAATATTAAATTGAGGTTAATGGCTCATTTAATTCAAAAGTTAATGACTC
66 TGGAATTAAAAGGACAAATATTAAATTGAGGTTAATGACTCATTTAATTCAAAAGTTAATGACTC
8108592 CTCAATTCACAAATGTTATTAGCTCCATTAGTCAAAATTTCTAAAAGTTCTTTTAATTTTTGAAT
131 CTCAATTCACAAATGTTATTAGCTCCATTAGTCAAAATTTCTAAAAGTTCTTTTAATTTTTGAAT
*
8108657 TTTCTTTAAAACCAAATAATTTGCAGGAAAAGATATACAAACTAAAATTTCCA-AAATTTCGAGA
196 TTTCTTTAAAACCAAATAATTTGCAGGAAAAGATATACAAACTAAAATTT-CAGAAATTTCAAGA
*
8108721 TCTTTTCCCTGCATATTTCGAACCTATTTTTAGTGATAGAAGAAAGTAAGGCTACAGTTCGTTGA
260 TCTTTTCCCTGCATATTTCGAACCTATTTTCAGTGATAGAAGAAAGTAAGGCTACAGTTCGTTGA
* *
8108786 TCACTATAGTCGTGCTACTGCCGTGCTCATCTCATTGTTGTATCTTGGGAGACAGTCGACCAACG
325 TCACTATAGCCGTGCTACTGCCGTGCTCATCTCATTGTTGTATCTTGGGAGACAGTCGACCAACA
*
8108851 TTTCTCTAGCACCAAAGGAGCGACCGAATCT
390 TTTCTCCAGCACCAAAGGAGCGACCGAATCT
8108882 GTCTTAAGGA
Statistics
Matches: 402, Mismatches: 17, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
455 400 1.00
456 2 0.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (455 bp):
CAGATATTTTAGCCTAATATGTAATTTTATTTTTCTCACCAAAGTTTATCTCTCCAAATTCTGCT
TGGAATTAAAAGGACAAATATTAAATTGAGGTTAATGACTCATTTAATTCAAAAGTTAATGACTC
CTCAATTCACAAATGTTATTAGCTCCATTAGTCAAAATTTCTAAAAGTTCTTTTAATTTTTGAAT
TTTCTTTAAAACCAAATAATTTGCAGGAAAAGATATACAAACTAAAATTTCAGAAATTTCAAGAT
CTTTTCCCTGCATATTTCGAACCTATTTTCAGTGATAGAAGAAAGTAAGGCTACAGTTCGTTGAT
CACTATAGCCGTGCTACTGCCGTGCTCATCTCATTGTTGTATCTTGGGAGACAGTCGACCAACAT
TTCTCCAGCACCAAAGGAGCGACCGAATCTATGAAAATAGGTTATTTTATTTTATTTTAGGTTTG
Found at i:8111097 original size:21 final size:21
Alignment explanation
Indices: 8111071--8111113 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
8111061 TATTATGAAG
8111071 TATGTTAGATTCACTGATTGA
1 TATGTTAGATTCACTGATTGA
8111092 TATGTTAGATTCACTGATTGA
1 TATGTTAGATTCACTGATTGA
8111113 T
1 T
8111114 CGAATTAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.09, G:0.19, T:0.44
Consensus pattern (21 bp):
TATGTTAGATTCACTGATTGA
Found at i:8115358 original size:3 final size:3
Alignment explanation
Indices: 8115352--8115378 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
8115342 CAACAACAAC
8115352 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
8115379 CTAGCACCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8120126 original size:211 final size:209
Alignment explanation
Indices: 8119584--8120607 Score: 970
Period size: 211 Copynumber: 4.9 Consensus size: 209
8119574 TATAATACGA
* * *
8119584 GCATAATACTTACTTCATCGGAGGATGAATCTTCCTCACTACTAGACTCTGAACTACTATCAGCT
1 GCATAATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATCAGCT
* * * * * ** *
8119649 TTCACTGTCTTAGCAACTGGTATAGAGCCACTTTTAGCAACTACGGGTTTTTTCTTCTGAACAGA
66 TTCACTGTCTTAGCAGCTGGAACAGAGCCACTTTTAGCAACTACAGGTTTTTTATTCTGTGCAGG
* * *
8119714 AGCTTCCTGGAATAAAACAGACA-ATTGAACATTAACAATCATGCAAAAGAATATTCCCAACCAT
131 AGCTTCCTGGGATAAAACA-AAATATTGAACATCAACAATCATGCAAAAGAATA-TCCCAACCAT
*
8119778 GCTAATATTACAAGCAT
194 ACTAA-ATTACAAGCAT
* * * * *
8119795 GAGTATAATAGTCACTTCGTCAGAGGATGAACCCTCCTCACTACTAGACTCAGAACTACTATCAG
1 --GCATAATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATCAG
* * ** *** *
8119860 CTTTCACAGTCTTAGCATCTGGAACAGATACACTTTTAGTGGCTACAGATTTTTTATTCTGTGCA
64 CTTTCACTGTCTTAGCAGCTGGAACAGAGCCACTTTTAGCAACTACAGGTTTTTTATTCTGTGCA
* *
8119925 GGAGCTTCCTGGGATAAGACAAAATATTGAACATCAACAATCATGCAAAAGAACACTCCCAACCA
129 GGAGCTTCCTGGGATAAAACAAAATATTGAACATCAACAATCATGCAAAAGAATA-TCCCAACCA
* * *
8119990 TACTCAAAATAAAACCAT
193 TACT-AAATTACAAGCAT
* * * *
8120008 GCATATTACTCACTTCATCAGAGGATGAGTCTTCTTCGCTACTAGACTCAGAACTACTATCAGCT
1 GCATAATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATCAGCT
* * * * * ** *
8120073 TTAACAGTCTTAGCAGCCGGAATAGAGCCAGGTTTT-GCAGGTACAGGTTTTTTATTCTGAGCAG
66 TTCACTGTCTTAGCAGCTGGAACAGAGCCA-CTTTTAGCAACTACAGGTTTTTTATTCTGTGCAG
* * * * ** **
8120137 GAGCTTCCT--GA-AAAA-AAAACAATTGAACATTAACAATTATACAAAAGAAGGT-CCAATTAT
130 GAGCTTCCTGGGATAAAACAAAA-TATTGAACATCAACAATCATGCAAAAGAATATCCCAACCAT
* * * * *
8120197 GCGAACGTTTTAACTAGCAAGA
194 ACTAA---ATT-ACAAGC-A-T
* *
8120219 GCATAATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTTGA---AGAACTGCTATCAGCT
1 GCATAATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATCAGCT
* * ** * *
8120281 TTCAGTGTCTTGGCAGCTGGAACAGAGCCTTTTTTAGCAACTACAGGGTTTTTCTTCT-TAGCAG
66 TTCACTGTCTTAGCAGCTGGAACAGAGCCACTTTTAGCAACTACAGGTTTTTTATTCTGT-GCAG
* *
8120345 GAGCTTCCT-GGATAAAACAAAATATTGAACATCAAAAATCATAG-AAAAGAATATAACCAACCA
130 GAGCTTCCTGGGATAAAACAAAATATTGAACATCAACAATCAT-GCAAAAGAATAT-CCCAACCA
*
8120408 -AGCTATATTACAAGCAT
193 TA-CTAAATTACAAGCAT
* * * *
8120425 GAGCATGATACTCACTTCGTCAGAGGATGAATCTTCCTCACTGCTAGACTCAGAACCACTATCAG
1 --GCATAATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATCAG
* * * *
8120490 CTTTCACTGTCTTGGCAGCTGGAACAGGGCCATTTTTAGAAACTACAGGTTTTTTATTC--TG-A
64 CTTTCACTGTCTTAGCAGCTGGAACAGAGCCACTTTTAGCAACTACAGGTTTTTTATTCTGTGCA
* * * *
8120552 GGAGCTTCCTGGAATATTAAA-AAAATATTTGAACATTAACGATCATAC-AAAGAATA
129 GGAGCTTCCTGGGATA--AAACAAAATA-TTGAACATCAACAATCATGCAAAAGAATA
8120608 CATCTTGACC
Statistics
Matches: 660, Mismatches: 122, Indels: 61
0.78 0.14 0.07
Matches are distributed among these distances:
205 2 0.00
206 7 0.01
207 10 0.02
208 156 0.24
209 14 0.02
210 44 0.07
211 240 0.36
212 13 0.02
213 172 0.26
214 2 0.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.28
Consensus pattern (209 bp):
GCATAATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATCAGCT
TTCACTGTCTTAGCAGCTGGAACAGAGCCACTTTTAGCAACTACAGGTTTTTTATTCTGTGCAGG
AGCTTCCTGGGATAAAACAAAATATTGAACATCAACAATCATGCAAAAGAATATCCCAACCATAC
TAAATTACAAGCAT
Found at i:8120474 original size:419 final size:422
Alignment explanation
Indices: 8119582--8120607 Score: 1154
Period size: 419 Copynumber: 2.4 Consensus size: 422
8119572 AATATAATAC
* * *
8119582 GAGCATAATACTTACTTCATCGGAGGATGAATCTTCCTCACTACTAGACTCTGAACTACTATCAG
1 GAGCAT-ATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATCAG
* * * * *
8119647 CTTTCACTGTCTTAGCAACTGGTATAGAGCCACTTTTAGCAACTACGGGTTTTTTCTTCTGAACA
65 CTTTCACTGTCTTAGCAGCTGGAATAGAGCCACTTTTAGCAACTACAGGTTTTTTATTCTGAGCA
* * * *
8119712 GAAGCTTCCTGGAATAAAACAGACAATTGAACATTAACAATCATGCAAAAGAATATTCCCAACCA
130 GGAGCTTCCTGGAATAAAA-AAACAATTGAACATTAACAATCATACAAAAGAATAGTCCCAACCA
* * * * *
8119777 TGCTAATATTACAAGCATGAGTATAATAGTCACTTCGTCAGAGGATGAACCCTCCTCACTACTAG
194 TGCGAATATTACAAGCAAGAGCATAATACTCACTTCATCAGAGGATGAACCCTCCTCACTACTAG
* * ***
8119842 ACTCAGAACTACTATCAGCTTTCACAGTCTTAGCATCTGGAACAGATACACTTTTAGTGGCTACA
259 A--CAGAACTACTATCAGCTTTCACAGTCTTAGCAGCTGGAACAGAGACACTTTTAGCAACTACA
* * *
8119907 GATTTTTTATTCTGTGCAGGAGCTTCCTGGGATAAGACAAAATATTGAACATCAACAATCATGCA
322 GAGTTTTTATTCTGTGCAGGAGCTTCCTGGGATAAAACAAAATATTGAACATCAAAAATCATGCA
*
8119972 AAAGAACACTCCCAACCATACTCAAAATAAAACCAT
387 AAAGAACACTACCAACCATACTCAAAATAAAACCAT
* * *
8120008 --GCATATTACTCACTTCATCAGAGGATGAGTCTTCTTCGCTACTAGACTCAGAACTACTATCAG
1 GAGCATA-TACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATCAG
* * * * **
8120071 CTTTAACAGTCTTAGCAGCCGGAATAGAGCCAGGTTTT-GCAGGTACAGGTTTTTTATTCTGAGC
65 CTTTCACTGTCTTAGCAGCTGGAATAGAGCCA-CTTTTAGCAACTACAGGTTTTTTATTCTGAGC
* * **
8120135 AGGAGCTTCCT-GAA-AAAAAAACAATTGAACATTAACAATTATACAAAAGAA-GGT-CCAATTA
129 AGGAGCTTCCTGGAATAAAAAAACAATTGAACATTAACAATCATACAAAAGAATAGTCCCAACCA
* * * *
8120196 TGCGAACGTTTTAACTAGCAAGAGCATAATACTCACTTCATCAGAGGATGAATCTTCCTCACTAC
194 TGCGAA--TATT-ACAAGCAAGAGCATAATACTCACTTCATCAGAGGATGAACCCTCCTCACTAC
* * ** * * **
8120261 TTGA-AGAACTGCTATCAGCTTTCAGTGTCTTGGCAGCTGGAACAGAGCCTTTTTTAGCAACTAC
256 TAGACAGAACTACTATCAGCTTTCACAGTCTTAGCAGCTGGAACAGAGACACTTTTAGCAACTAC
* *
8120325 AGGGTTTTTCTTCT-TAGCAGGAGCTTCCT-GGATAAAACAAAATATTGAACATCAAAAATCATA
321 AGAGTTTTTATTCTGT-GCAGGAGCTTCCTGGGATAAAACAAAATATTGAACATCAAAAATCAT-
* * * * *
8120388 G-AAAAGAATA-TAACCAACCA-AGCT-ATATTACAAGCAT
384 GCAAAAGAACACT-ACCAACCATA-CTCAAAATAAAACCAT
* * *
8120425 GAGCATGATACTCACTTCGTCAGAGGATGAATCTTCCTCACTGCTAGACTCAGAACCACTATCAG
1 GAGCAT-ATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATCAG
* * * * *
8120490 CTTTCACTGTCTTGGCAGCTGGAACAGGGCCATTTTTAGAAACTACAGGTTTTTTATTCT--G-A
65 CTTTCACTGTCTTAGCAGCTGGAATAGAGCCACTTTTAGCAACTACAGGTTTTTTATTCTGAGCA
*
8120552 GGAGCTTCCTGGAATATTAAAAAA-ATATTTGAACATTAACGATCATAC-AAAGAATA
130 GGAGCTTCCTGGAATA--AAAAAACA-A-TTGAACATTAACAATCATACAAAAGAATA
8120608 CATCTTGACC
Statistics
Matches: 503, Mismatches: 77, Indels: 45
0.80 0.12 0.07
Matches are distributed among these distances:
416 11 0.02
417 15 0.03
418 54 0.11
419 184 0.37
420 15 0.03
421 51 0.10
422 52 0.10
423 4 0.01
424 113 0.22
425 4 0.01
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.28
Consensus pattern (422 bp):
GAGCATATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATCAGC
TTTCACTGTCTTAGCAGCTGGAATAGAGCCACTTTTAGCAACTACAGGTTTTTTATTCTGAGCAG
GAGCTTCCTGGAATAAAAAAACAATTGAACATTAACAATCATACAAAAGAATAGTCCCAACCATG
CGAATATTACAAGCAAGAGCATAATACTCACTTCATCAGAGGATGAACCCTCCTCACTACTAGAC
AGAACTACTATCAGCTTTCACAGTCTTAGCAGCTGGAACAGAGACACTTTTAGCAACTACAGAGT
TTTTATTCTGTGCAGGAGCTTCCTGGGATAAAACAAAATATTGAACATCAAAAATCATGCAAAAG
AACACTACCAACCATACTCAAAATAAAACCAT
Found at i:8124539 original size:20 final size:20
Alignment explanation
Indices: 8124514--8124554 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
8124504 CTTCCTTACC
8124514 CCCAACCGATAAGTAGTGTA
1 CCCAACCGATAAGTAGTGTA
8124534 CCCAACCGATAAGTAGTGTA
1 CCCAACCGATAAGTAGTGTA
8124554 C
1 C
8124555 GCTCTAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.20
Consensus pattern (20 bp):
CCCAACCGATAAGTAGTGTA
Found at i:8127016 original size:27 final size:27
Alignment explanation
Indices: 8126959--8127278 Score: 320
Period size: 27 Copynumber: 11.9 Consensus size: 27
8126949 GGGTATAAAA
* *
8126959 GTCATTTTACCCTAT-GAGG-ATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* **
8126984 GTCATTTTAACCTATGGAAGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* **
8127011 GTCATTCTACCCTATGGGGGTATTTTA
1 GTCATTTTACCCTATGGGGGTATTTCG
*
8127038 GTCATTTTATCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* **
8127065 ATCATTTTACCCTATGGGGGTATTTTA
1 GTCATTTTACCCTATGGGGGTATTTCG
* **
8127092 GTTATTTTACCCTATAAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * *
8127119 GTTATTTTACCTTATGAGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
8127146 GTTATTTTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
8127173 GTCATTCTATCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
8127200 ATCATTTTACTCTATGGAGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * *
8127227 GCCATTCTATCGTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * *
8127254 ATAATTTAACCCTATGGAGGTATTT
1 GTCATTTTACCCTATGGGGGTATTT
8127279 TGGTTATAAC
Statistics
Matches: 239, Mismatches: 54, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
25 14 0.06
26 3 0.01
27 222 0.93
ACGTcount: A:0.21, C:0.15, G:0.21, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:8130820 original size:29 final size:30
Alignment explanation
Indices: 8130788--8130846 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
8130778 TATCGTTTAA
* *
8130788 TGTGCAATTGTATACATG-AATTTTGATTT
1 TGTGAAATTGTATACAAGAAATTTTGATTT
*
8130817 TGTGAAATTTTATACAAGAAATTTTGATTT
1 TGTGAAATTGTATACAAGAAATTTTGATTT
8130847 GATTCAATTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.32, C:0.05, G:0.15, T:0.47
Consensus pattern (30 bp):
TGTGAAATTGTATACAAGAAATTTTGATTT
Found at i:8140185 original size:25 final size:27
Alignment explanation
Indices: 8140151--8140201 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
8140141 ATATTATTAA
8140151 TATAATATA-TAA-ATGTTATAATAAG
1 TATAATATATTAATATGTTATAATAAG
8140176 TATAATATATTAATATGTTATAATAA
1 TATAATATATTAATATGTTATAATAA
8140202 ACATTAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 9 0.38
26 3 0.12
27 12 0.50
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (27 bp):
TATAATATATTAATATGTTATAATAAG
Found at i:8147477 original size:20 final size:21
Alignment explanation
Indices: 8147435--8147482 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
8147425 TACTTTTAAA
*
8147435 AAAGTATAGATACATTGGTGC
1 AAAGTATAAATACATTGGTGC
*
8147456 AAAGTATAAATA-ATTTGTGC
1 AAAGTATAAATACATTGGTGC
8147476 AAAGTAT
1 AAAGTAT
8147483 CTATACCTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 14 0.56
21 11 0.44
ACGTcount: A:0.44, C:0.06, G:0.19, T:0.31
Consensus pattern (21 bp):
AAAGTATAAATACATTGGTGC
Found at i:8148305 original size:14 final size:17
Alignment explanation
Indices: 8148273--8148310 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 17
8148263 AATTATAAAG
8148273 TATATTATTAAATTAAT
1 TATATTATTAAATTAAT
8148290 TATATTA-TAAA-T-AT
1 TATATTATTAAATTAAT
8148304 TATATTA
1 TATATTA
8148311 AGAAATAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 9 0.43
15 1 0.05
16 4 0.19
17 7 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TATATTATTAAATTAAT
Found at i:8148354 original size:12 final size:12
Alignment explanation
Indices: 8148337--8148361 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8148327 AAGACAAATG
8148337 TATGGTGATGAT
1 TATGGTGATGAT
8148349 TATGGTGATGAT
1 TATGGTGATGAT
8148361 T
1 T
8148362 TGATACAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (12 bp):
TATGGTGATGAT
Found at i:8148666 original size:9 final size:9
Alignment explanation
Indices: 8148644--8148683 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
8148634 GAAATAGGGA
8148644 GAAAGGAAAG
1 GAAA-GAAAG
*
8148654 GAAAGAAAT
1 GAAAGAAAG
8148663 GAAAGAAA-
1 GAAAGAAAG
8148671 GAAAGAAAG
1 GAAAGAAAG
8148680 GAAA
1 GAAA
8148684 AACTAGAGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
8 8 0.29
9 16 0.57
10 4 0.14
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.03
Consensus pattern (9 bp):
GAAAGAAAG
Found at i:8149075 original size:17 final size:18
Alignment explanation
Indices: 8149053--8149086 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
8149043 TAAATGAGTT
8149053 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
8149070 AATTAGGGTATAAATTG
1 AATTAGGATATAAATTG
8149087 AAAAGAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.35
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:8150445 original size:26 final size:26
Alignment explanation
Indices: 8150415--8150466 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
8150405 AATGGTTGTG
*
8150415 GTTTGAAATTGCAGGGAAGGTTAGAT
1 GTTTGAAATTGCAGGAAAGGTTAGAT
* *
8150441 GTTTGAAATTGTAGGAAATGTTAGAT
1 GTTTGAAATTGCAGGAAAGGTTAGAT
8150467 AATTATAAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.02, G:0.31, T:0.35
Consensus pattern (26 bp):
GTTTGAAATTGCAGGAAAGGTTAGAT
Found at i:8158900 original size:22 final size:22
Alignment explanation
Indices: 8158875--8158946 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 22
8158865 AGTACTTTGG
8158875 TGCTCTTTGTTCAACACTTCGA
1 TGCTCTTTGTTCAACACTTCGA
* *
8158897 TGCTCTCTGCTT-ATCACTTTCG-
1 TGCTCTTTG-TTCAACAC-TTCGA
* * *
8158919 TGCTCTTTGATCAGCATTTCGA
1 TGCTCTTTGTTCAACACTTCGA
8158941 TGCTCT
1 TGCTCT
8158947 CTTCTTAGCA
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
21 5 0.12
22 29 0.73
23 6 0.15
ACGTcount: A:0.14, C:0.28, G:0.15, T:0.43
Consensus pattern (22 bp):
TGCTCTTTGTTCAACACTTCGA
Found at i:8158940 original size:44 final size:44
Alignment explanation
Indices: 8158863--8158972 Score: 134
Period size: 44 Copynumber: 2.5 Consensus size: 44
8158853 GTGTACGAGT
* * *
8158863 TTAGTACTTTGGTGCTCTTTGTTCAACACTTCGATGCTCTCTGC
1 TTAGCACTTTCGTGCTCTTTGATCAACACTTCGATGCTCTCTGC
* * * *
8158907 TTATCACTTTCGTGCTCTTTGATCAGCATTTCGATGCTCTCTTC
1 TTAGCACTTTCGTGCTCTTTGATCAACACTTCGATGCTCTCTGC
8158951 TTAGCAC-TTCAGTGCT-TTTGAT
1 TTAGCACTTTC-GTGCTCTTTGAT
8158973 TTATCACTAT
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
43 9 0.16
44 48 0.84
ACGTcount: A:0.15, C:0.25, G:0.16, T:0.45
Consensus pattern (44 bp):
TTAGCACTTTCGTGCTCTTTGATCAACACTTCGATGCTCTCTGC
Found at i:8158956 original size:22 final size:23
Alignment explanation
Indices: 8158892--8158959 Score: 70
Period size: 22 Copynumber: 3.0 Consensus size: 23
8158882 TGTTCAACAC
* *
8158892 TTCGATGCTCTCTGCTTATCACT
1 TTCGATGCTCTCTTCTTAGCACT
* *
8158915 TTCG-TGCTCT-TTGATCAGCA-T
1 TTCGATGCTCTCTT-CTTAGCACT
8158936 TTCGATGCTCTCTTCTTAGCACT
1 TTCGATGCTCTCTTCTTAGCACT
8158959 T
1 T
8158960 CAGTGCTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
21 6 0.17
22 21 0.60
23 8 0.23
ACGTcount: A:0.13, C:0.28, G:0.15, T:0.44
Consensus pattern (23 bp):
TTCGATGCTCTCTTCTTAGCACT
Found at i:8160641 original size:20 final size:20
Alignment explanation
Indices: 8160609--8160660 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
8160599 ATATATCTTG
8160609 AATT-ATTTAATTCTAATCA
1 AATTGATTTAATTCTAATCA
* *
8160628 ATTTGATTTGATTCTAATCA
1 AATTGATTTAATTCTAATCA
*
8160648 AATTGATTCAATT
1 AATTGATTTAATT
8160661 GCCCCATTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 3 0.11
20 24 0.89
ACGTcount: A:0.37, C:0.10, G:0.06, T:0.48
Consensus pattern (20 bp):
AATTGATTTAATTCTAATCA
Found at i:8161121 original size:18 final size:19
Alignment explanation
Indices: 8161100--8161139 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
8161090 TGTTCTGTTT
8161100 ATATTTTA-TTATATATAA
1 ATATTTTATTTATATATAA
*
8161118 ATA-TTTATTTATATATAT
1 ATATTTTATTTATATATAA
8161136 ATAT
1 ATAT
8161140 CTATTTTGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
ATATTTTATTTATATATAA
Found at i:8161144 original size:18 final size:18
Alignment explanation
Indices: 8161108--8161145 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
8161098 TTATATTTTA
*
8161108 TTATATATAAATATTTAT
1 TTATATATAAATATCTAT
*
8161126 TTATATATATATATCTAT
1 TTATATATAAATATCTAT
8161144 TT
1 TT
8161146 TGTTTGCTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (18 bp):
TTATATATAAATATCTAT
Found at i:8161316 original size:40 final size:41
Alignment explanation
Indices: 8161228--8161322 Score: 106
Period size: 40 Copynumber: 2.4 Consensus size: 41
8161218 GTTTGGATAA
* * **
8161228 AAAACGCCGCT-AAAGATCGAGCATTAGCGGCGCTTTTTGG
1 AAAACGCCGCTAAAAGATCAAGCATTAGCGCCGCTTTTCAG
8161268 AAAACGCCGCTAAAAGAT-AAGCATTAGCGCCG-TTTTCCAG
1 AAAACGCCGCTAAAAGATCAAGCATTAGCGCCGCTTTT-CAG
* *
8161308 AAAGCGCCGCAAAAA
1 AAAACGCCGCTAAAA
8161323 ACCTAAGCCC
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
39 4 0.09
40 37 0.79
41 6 0.13
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.18
Consensus pattern (41 bp):
AAAACGCCGCTAAAAGATCAAGCATTAGCGCCGCTTTTCAG
Found at i:8161415 original size:41 final size:41
Alignment explanation
Indices: 8161358--8161499 Score: 214
Period size: 41 Copynumber: 3.5 Consensus size: 41
8161348 TGAGCTTTCG
* *
8161358 GGGCTTTAGCGGCGTTTTTAGGAAAGTGCCGCCAATGCTCA
1 GGGCTTTAGCGGCGTTTTTAGGTAAGTGCCGCTAATGCTCA
*
8161399 GGGCTTTAGCTGCGTTTTT-GAGTAAGTGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTAG-GTAAGTGCCGCTAATGCTCA
* * *
8161440 GGGATTTAGCGGCGTTTTTAGGTAAGCGCCGCTAATGCTTA
1 GGGCTTTAGCGGCGTTTTTAGGTAAGTGCCGCTAATGCTCA
8161481 GGGCTTTAGCGGCGTTTTT
1 GGGCTTTAGCGGCGTTTTT
8161500 TTGTGAAAAC
Statistics
Matches: 91, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
40 1 0.01
41 89 0.98
42 1 0.01
ACGTcount: A:0.17, C:0.19, G:0.32, T:0.32
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTAGGTAAGTGCCGCTAATGCTCA
Found at i:8161781 original size:161 final size:157
Alignment explanation
Indices: 8161542--8161842 Score: 467
Period size: 161 Copynumber: 1.9 Consensus size: 157
8161532 GGTTTAGGGG
8161542 TTATTATAATTTAAAGTTTATCAATATGGTTTAGGGTTTTAGGGTTTATTATATAATATTTATTA
1 TTATTATAATTTAAAGTTTATCAATATGGTTTAGGGTTTTAGGGTTTATTATATAATATTTATTA
* * * * *
8161607 TTTTGGGATTAGAGTTTTGAGTTTAGGGTTTATGGTGTAAGTTTAGTGTTTTGGGTTTAGGGTTT
66 TTTTGGGATTAGAGTCTTGAGTTTAGGGTTTATGATGTAAGTTTAGTATTTTGAGTTTAGGGGTT
*
8161672 GGGAGTTTGGTGATTAAGGTTTAGTTA
131 AGGAGTTTGGTGATTAAGGTTTAGTTA
* * *
8161699 TTATTATAATTTAAAGTTTTTCGTATATGGTTTAGGGTTTTAGGGTTAATCATTATATAATGTTT
1 TTATTATAATTTAAAGTTTATC-AATATGGTTTAGGGTTTTAGGGTT--T-ATTATATAATATTT
* *
8161764 ATTATTTTGGGATTAGAGTCTTGAGTTTAGGGTTTATGATGTAGGTTTAGTATTTTTAGTTTAGG
62 ATTATTTTGGGATTAGAGTCTTGAGTTTAGGGTTTATGATGTAAGTTTAGTATTTTGAGTTTAGG
8161829 GGTTAGGAGTTTGG
127 GGTTAGGAGTTTGG
8161843 GGTTTAAGAT
Statistics
Matches: 129, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
157 21 0.16
158 23 0.18
160 1 0.01
161 84 0.65
ACGTcount: A:0.24, C:0.01, G:0.26, T:0.50
Consensus pattern (157 bp):
TTATTATAATTTAAAGTTTATCAATATGGTTTAGGGTTTTAGGGTTTATTATATAATATTTATTA
TTTTGGGATTAGAGTCTTGAGTTTAGGGTTTATGATGTAAGTTTAGTATTTTGAGTTTAGGGGTT
AGGAGTTTGGTGATTAAGGTTTAGTTA
Found at i:8162395 original size:13 final size:13
Alignment explanation
Indices: 8162382--8162412 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
8162372 AAATTTTTTA
8162382 AATAATAT-TATT
1 AATAATATATATT
8162394 AATAATATATATT
1 AATAATATATATT
8162407 AATAAT
1 AATAAT
8162413 GTCTTTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 8 0.44
13 10 0.56
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
AATAATATATATT
Found at i:8162940 original size:253 final size:253
Alignment explanation
Indices: 8162492--8163256 Score: 1228
Period size: 253 Copynumber: 3.0 Consensus size: 253
8162482 TTGAAAATTT
8162492 ATAAATAATATTAATAAAAAGTTAATCAGTAGCGGCGTTTCCATGTAAAAACGCCACAAAATCTA
1 ATAAATAATATTAATAAAAAGTTAATCAGTAGCGGCGTTTCCATGT-AAAACGCCACAAAATCTA
* * ** ** *
8162557 AATATTAGCGGCGTTTGTTCAGAAAACACCT-CAAAAAACATA-TAAAAATTAAACAAAACGGCA
65 AATACTAGCGGCATTTGTTTGGAAAA-TGCTGAAAAAAACATATTAAAAATTAAACAAAACGGCA
* * * * * * *
8162620 CCGCTTCATTGACGAGTTAAATATTATTGGCGTTTTTTGTCAAAATGCCGTAAAAGTTGTGAAAC
129 CCGCTTCATTGACGAGTTAAATGTTAGTGGTGTTTCTTATCAAAACGCCGCAAAAGTTGTGAAAC
* *
8162685 TAGTGGCATTTTTTCGTAAGCGCCGCAAATGTTAAAATAGAAAACGACGCCGTTTTAAAC
194 TAGTGGCGTTTTTTCGTAAGCGCCGCAAATGTTAAAATAGAAAACGACGCCGTTTTTAAC
8162745 ATAAATAATATTAATAAAAAGTTAATCAGTAGCGGCGTTTCCATGTAAAACGCCACAAAATCTAA
1 ATAAATAATATTAATAAAAAGTTAATCAGTAGCGGCGTTTCCATGTAAAACGCCACAAAATCTAA
8162810 ATACTAGCGGCATTTGTTTGGAAAATGCTGAAAAAAACATATTAAAAATTAAACAAAACGGCACC
66 ATACTAGCGGCATTTGTTTGGAAAATGCTGAAAAAAACATATTAAAAATTAAACAAAACGGCACC
8162875 GCTTCATTGACGAGTTAAATGTTAGTGGTGTTTCTTATCAAAACGCCGCAAAAGTTGTGAAACTA
131 GCTTCATTGACGAGTTAAATGTTAGTGGTGTTTCTTATCAAAACGCCGCAAAAGTTGTGAAACTA
* * * *
8162940 GTGGCGTTTTTTCGTAAGCGCCGCAAATGTTGAAATGGAAAACGACGTCGTTTTTAGC
196 GTGGCGTTTTTTCGTAAGCGCCGCAAATGTTAAAATAGAAAACGACGCCGTTTTTAAC
* * *
8162998 ATAAATAATATTAATAGAAAGTTAATCAGTAGCGGCGTTTCGATGTAAAGCGCCACAAAATCTAA
1 ATAAATAATATTAATAAAAAGTTAATCAGTAGCGGCGTTTCCATGTAAAACGCCACAAAATCTAA
* *
8163063 ATACTAGCAGCATTTGTTTGGAAAATGCCGAAAAAAACATATTAAAAATTAAACAAAACGGCACC
66 ATACTAGCGGCATTTGTTTGGAAAATGCTGAAAAAAACATATTAAAAATTAAACAAAACGGCACC
8163128 GCTTCATTGACGAGTTAAATGTTAGTGGTGTTTCTTATCAAAACGCCGCAAAAGTTGTGAAACTA
131 GCTTCATTGACGAGTTAAATGTTAGTGGTGTTTCTTATCAAAACGCCGCAAAAGTTGTGAAACTA
* * * **
8163193 GTGGCGTTTTTTTGTAAGTGCCGCAAATGTTAAAATAGAAAACAAATCCGTTTTTAAC
196 GTGGCGTTTTTTCGTAAGCGCCGCAAATGTTAAAATAGAAAACGACGCCGTTTTTAAC
8163251 ATAAAT
1 ATAAAT
8163257 CAGGTTCTTT
Statistics
Matches: 476, Mismatches: 34, Indels: 4
0.93 0.07 0.01
Matches are distributed among these distances:
251 2 0.00
252 50 0.11
253 424 0.89
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (253 bp):
ATAAATAATATTAATAAAAAGTTAATCAGTAGCGGCGTTTCCATGTAAAACGCCACAAAATCTAA
ATACTAGCGGCATTTGTTTGGAAAATGCTGAAAAAAACATATTAAAAATTAAACAAAACGGCACC
GCTTCATTGACGAGTTAAATGTTAGTGGTGTTTCTTATCAAAACGCCGCAAAAGTTGTGAAACTA
GTGGCGTTTTTTCGTAAGCGCCGCAAATGTTAAAATAGAAAACGACGCCGTTTTTAAC
Found at i:8164161 original size:122 final size:122
Alignment explanation
Indices: 8163944--8164187 Score: 400
Period size: 122 Copynumber: 2.0 Consensus size: 122
8163934 CAACTGCTTT
* *
8163944 CCCTGACATACAACATTAGAATTCTATGTTATATACACTTTGAACCTTTTTGCATTCAGCATTGA
1 CCCTGACATACAACATTAGAATTCAATGTTATATACACTTTGAACCTTTCTGCATTCAGCATTGA
* ** *
8164009 CTTGAAAACTGGGAATCTAAGCTCAGAAATTGTGAATGG-ATCAAGTGGCACCTCATA
66 CTAGAAAACTAAGAATCTAAGCTCAGAAATTGTG-ACGGTATCAAGTGGCACCTCATA
* *
8164066 CCCTGACATGCAACATTAGGATTCAATGTTATATACACTTTGAACCTTTCTGCATTCAGCATTGA
1 CCCTGACATACAACATTAGAATTCAATGTTATATACACTTTGAACCTTTCTGCATTCAGCATTGA
8164131 CTAGAAAACTAAGAATCTAAGCTCAGAAATTGTGACGGTATCAAGTGGCACCTCATA
66 CTAGAAAACTAAGAATCTAAGCTCAGAAATTGTGACGGTATCAAGTGGCACCTCATA
8164188 TAGCATGCAT
Statistics
Matches: 113, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
121 3 0.03
122 110 0.97
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.30
Consensus pattern (122 bp):
CCCTGACATACAACATTAGAATTCAATGTTATATACACTTTGAACCTTTCTGCATTCAGCATTGA
CTAGAAAACTAAGAATCTAAGCTCAGAAATTGTGACGGTATCAAGTGGCACCTCATA
Found at i:8166105 original size:41 final size:42
Alignment explanation
Indices: 8166060--8166189 Score: 120
Period size: 43 Copynumber: 3.1 Consensus size: 42
8166050 ATTATTTTTT
* * *
8166060 TAAAGATATGTT-TTTAGCGGCATTTGTGTGAAAAGTGCCGC
1 TAAAGATATGTTCTATAGCGGCATTTGTGGGAAAAGCGCCGC
* * * *
8166101 TAAAGGTCTGTTCTATAGCGGCGTTTGTGGGAAAAGCGGCGC
1 TAAAGATATGTTCTATAGCGGCATTTGTGGGAAAAGCGCCGC
* * * **
8166143 TAAA-AGTCAGGATCTATAGCGGCGTTTGTAAGAAAAGCGCCGC
1 TAAAGA-T-ATGTTCTATAGCGGCATTTGTGGGAAAAGCGCCGC
8166186 TAAA
1 TAAA
8166190 AGTCATTTTG
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
41 10 0.14
42 29 0.40
43 33 0.46
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.27
Consensus pattern (42 bp):
TAAAGATATGTTCTATAGCGGCATTTGTGGGAAAAGCGCCGC
Found at i:8166171 original size:43 final size:43
Alignment explanation
Indices: 8166074--8166194 Score: 154
Period size: 43 Copynumber: 2.8 Consensus size: 43
8166064 GATATGTTTT
* * * * * *
8166074 TAGCGGCATTTGTGTGAAAAGTGCCGCTAAAGGTC-TGTTCTA
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAAGTCAGGATCTA
* *
8166116 TAGCGGCGTTTGTGGGAAAAGCGGCGCTAAAAGTCAGGATCTA
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAAGTCAGGATCTA
*
8166159 TAGCGGCGTTTGTAAGAAAAGCGCCGCTAAAAGTCA
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAAGTCA
8166195 TTTTGTGTAA
Statistics
Matches: 68, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 30 0.44
43 38 0.56
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (43 bp):
TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAAGTCAGGATCTA
Found at i:8166256 original size:43 final size:42
Alignment explanation
Indices: 8166196--8166319 Score: 143
Period size: 43 Copynumber: 3.1 Consensus size: 42
8166186 TAAAAGTCAT
* *
8166196 TTTGTGTAAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGAG
1 TTTGTGGAAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCG
* *
8166238 TTTGTGGAAAAAGTGCCGCTAAAGGT-C----CTA-AGGGGCG
1 TTTGTGG-AAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCG
* *
8166275 TTTGTGGGAAAGCGCCGCTAAAGGTCATGATCTATAGCGGCG
1 TTTGTGGAAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCG
8166317 TTT
1 TTT
8166320 ATTTCTAAAA
Statistics
Matches: 67, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
36 16 0.24
37 12 0.18
38 3 0.04
41 3 0.04
42 16 0.24
43 17 0.25
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (42 bp):
TTTGTGGAAAAGCGCCGCTAAAGGTCCTGATCTATAGCGGCG
Found at i:8173770 original size:19 final size:19
Alignment explanation
Indices: 8173748--8173785 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
8173738 AATTTTGATT
*
8173748 AAATAAATTTAAATTAATA
1 AAATAAATTAAAATTAATA
*
8173767 AAATTAATTAAAATTAATA
1 AAATAAATTAAAATTAATA
8173786 TGATATTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
AAATAAATTAAAATTAATA
Found at i:8174268 original size:62 final size:59
Alignment explanation
Indices: 8174202--8174320 Score: 175
Period size: 62 Copynumber: 2.0 Consensus size: 59
8174192 TATTTTATTA
* * * *
8174202 ATTTAATATTAAATTTAATTTAATGTTTATCTTGTAGATAAATATTCTATTAATTTAATAAG
1 ATTTAATATTAAATTTAATCTAATATTTATC-T-T-GATAAATACTATATTAATTTAATAAG
8174264 ATTTAATATTAAATTTAATCTAATATTTATCTTGATAAATACTATATTAATTTAATA
1 ATTTAATATTAAATTTAATCTAATATTTATCTTGATAAATACTATATTAATTTAATA
8174321 TTAAAGTATA
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 22 0.42
60 1 0.02
61 1 0.02
62 29 0.55
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (59 bp):
ATTTAATATTAAATTTAATCTAATATTTATCTTGATAAATACTATATTAATTTAATAAG
Done.