Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 ID=Chr13-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58321163
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 747533 characters in sequence are not A, C, G, or T
File 50 of 199
Found at i:14653729 original size:85 final size:85
Alignment explanation
Indices: 14653580--14653842 Score: 355
Period size: 85 Copynumber: 3.1 Consensus size: 85
14653570 ACCACCGATA
* * * *
14653580 ATTTGCAGTTATTGCCACTTGTTGTAGGTGCACACCATATTTGCAGAATAAACGAACTACCACTT
1 ATTTGCAGTTATTGCCACTTGTTGTGGGTGCACAACATATTTACAGATTAAACGAACTACCACTT
*
14653645 GGTTCGTGATCGAACCGCAT
66 GGTTCGTGATCGAACCACAT
* * * * * **
14653665 ATTTGCAGTTATTGTCACTTATTGTGGGTGCACAACATATTTAAAGATTATATGAACTGTCACTT
1 ATTTGCAGTTATTGCCACTTGTTGTGGGTGCACAACATATTTACAGATTAAACGAACTACCACTT
* *
14653730 GGTTCATGATCGAACTACAT
66 GGTTCGTGATCGAACCACAT
* * *
14653750 ATTTGCAATTACTACCACTTGTTGTGGGTGCACAACATATTTACAGATTAAACGAACTACCACTT
1 ATTTGCAGTTATTGCCACTTGTTGTGGGTGCACAACATATTTACAGATTAAACGAACTACCACTT
*
14653815 GGTTCGTGATCAAACCACATT
66 GGTTCGTGATCGAACCACA-T
14653836 ATTTGCA
1 ATTTGCA
14653843 TATTATTAAA
Statistics
Matches: 150, Mismatches: 27, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
85 142 0.95
86 8 0.05
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (85 bp):
ATTTGCAGTTATTGCCACTTGTTGTGGGTGCACAACATATTTACAGATTAAACGAACTACCACTT
GGTTCGTGATCGAACCACAT
Found at i:14655310 original size:50 final size:50
Alignment explanation
Indices: 14655231--14655473 Score: 342
Period size: 50 Copynumber: 4.8 Consensus size: 50
14655221 ATTTGGGTAA
* * * *
14655231 AGAGGTCCCACGTAAGACTATGTCCGGGACATGGCGTTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
*
14655281 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
14655331 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * * * *
14655381 AGAGGTCCCCCGTAGGACCATATCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** *
14655431 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
14655474 TGTTATTATC
Statistics
Matches: 171, Mismatches: 21, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
50 139 0.81
51 32 0.19
ACGTcount: A:0.25, C:0.23, G:0.32, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:14659239 original size:5 final size:5
Alignment explanation
Indices: 14659231--14659314 Score: 168
Period size: 5 Copynumber: 16.8 Consensus size: 5
14659221 AGTTAAGTTA
14659231 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
14659281 TATAT TATAT TATAT TATAT TATAT TATAT TATA
1 TATAT TATAT TATAT TATAT TATAT TATAT TATA
14659315 AAAGAAATAA
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 79 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:14660368 original size:22 final size:22
Alignment explanation
Indices: 14660337--14660394 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
14660327 NNNNNNNACG
14660337 TCAGTGCTCTCTG-ATTAGCACA
1 TCAGTGCTCTCTGTA-TAGCACA
* *
14660359 TCTGTGCTCTCTGTATAGCACT
1 TCAGTGCTCTCTGTATAGCACA
14660381 TCAGTGCTCTCTGT
1 TCAGTGCTCTCTGT
14660395 TCATTAGTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
22 31 0.97
23 1 0.03
ACGTcount: A:0.16, C:0.28, G:0.19, T:0.38
Consensus pattern (22 bp):
TCAGTGCTCTCTGTATAGCACA
Found at i:14661192 original size:54 final size:54
Alignment explanation
Indices: 14661106--14661221 Score: 135
Period size: 54 Copynumber: 2.1 Consensus size: 54
14661096 AACACGACAA
* * * *
14661106 GAATGAATAGCCTTTATGGCACACTCTAAAAGAATTGCCTCTGTGGTAAG-CTCT
1 GAATGAACAACCTTTATGGCACACTCGAAAAGAACTGCCTCTGTGG-AAGACTCT
* * * * *
14661160 GAATGAACAACCTTTGTGGCGCACTCGGAAAGAACTGCCTTTGTGGCAGACTCT
1 GAATGAACAACCTTTATGGCACACTCGAAAAGAACTGCCTCTGTGGAAGACTCT
14661214 GAATGAAC
1 GAATGAAC
14661222 TGCCTCTGTG
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 2 0.04
54 50 0.96
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (54 bp):
GAATGAACAACCTTTATGGCACACTCGAAAAGAACTGCCTCTGTGGAAGACTCT
Found at i:14661241 original size:27 final size:27
Alignment explanation
Indices: 14661141--14661270 Score: 98
Period size: 27 Copynumber: 4.8 Consensus size: 27
14661131 CTAAAAGAAT
* **
14661141 TGCCTCTGTGGTAAGCTCTGAATGAAC
1 TGCCTCTGTGGCAAAATCTGAATGAAC
** * ** * * *
14661168 AACCTTTGTGGCGCACTCGGAAAGAAC
1 TGCCTCTGTGGCAAAATCTGAATGAAC
* * *
14661195 TGCCTTTGTGGCAGACTCTGAATGAAC
1 TGCCTCTGTGGCAAAATCTGAATGAAC
*
14661222 TGCCTCTGTGGAAAAATCTGAATGAAC
1 TGCCTCTGTGGCAAAATCTGAATGAAC
* * *
14661249 TACCTCGGTGGCATAATCTGAA
1 TGCCTCTGTGGCAAAATCTGAA
14661271 AGGATTTCCT
Statistics
Matches: 80, Mismatches: 23, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (27 bp):
TGCCTCTGTGGCAAAATCTGAATGAAC
Found at i:14661272 original size:81 final size:81
Alignment explanation
Indices: 14661115--14661287 Score: 184
Period size: 81 Copynumber: 2.1 Consensus size: 81
14661105 AGAATGAATA
* * * ** **
14661115 GCCTTTATGGCACACTCTAAAAGAATTGCCTCTGTGGTAAGCTCTGAATGAACAACCTTTGTGGC
1 GCCTTTGTGGCACACTCTAAAAGAACTGCCTCTGTGGAAAAATCTGAATGAACAACCTCGGTGGC
* *
14661180 GCACTCGGAAAGAACT
66 ACAATCGGAAAGAACT
* * * *
14661196 GCCTTTGTGGCAGACTCTGAATGAACTGCCTCTGTGGAAAAATCTGAATGAACTACCTCGGTGGC
1 GCCTTTGTGGCACACTCTAAAAGAACTGCCTCTGTGGAAAAATCTGAATGAACAACCTCGGTGGC
* * * *
14661261 ATAATCTGAAAGGATT
66 ACAATCGGAAAGAACT
*
14661277 TCCTTTGTGGC
1 GCCTTTGTGGC
14661288 GTACATTAAT
Statistics
Matches: 74, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 74 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.28
Consensus pattern (81 bp):
GCCTTTGTGGCACACTCTAAAAGAACTGCCTCTGTGGAAAAATCTGAATGAACAACCTCGGTGGC
ACAATCGGAAAGAACT
Found at i:14663102 original size:19 final size:19
Alignment explanation
Indices: 14663078--14663188 Score: 177
Period size: 19 Copynumber: 5.8 Consensus size: 19
14663068 AATCTTCAGG
14663078 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14663097 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* **
14663116 AATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14663135 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
14663154 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14663173 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
14663189 AGATATGATT
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 82 1.00
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14663128 original size:38 final size:38
Alignment explanation
Indices: 14663085--14663188 Score: 199
Period size: 38 Copynumber: 2.7 Consensus size: 38
14663075 AGGGATATGC
14663085 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
*
14663123 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
14663161 AATCTTAGATATGATATGCAATCTTAGA
1 AATCTTAGATATGATATGCAATCTTAGA
14663189 AGATATGATT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 65 1.00
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.38
Consensus pattern (38 bp):
AATCTTAGATATGATATGCAATCTTAGATATAATATAT
Found at i:14663214 original size:22 final size:21
Alignment explanation
Indices: 14663078--14663214 Score: 114
Period size: 19 Copynumber: 6.9 Consensus size: 21
14663068 AATCTTCAGG
*
14663078 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
14663097 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
* *
14663116 AATATATAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
14663135 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
14663154 GATATATAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
14663173 GATATGCAATCTTAGAAGATAT
1 GATATGTAATCTTAG-AGATAT
*
14663195 GATTTTGTAATCTTAGAGAT
1 GA-TATGTAATCTTAGAGAT
14663215 TTAATTTGTA
Statistics
Matches: 102, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
19 79 0.77
22 12 0.12
23 11 0.11
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.39
Consensus pattern (21 bp):
GATATGTAATCTTAGAGATAT
Found at i:14663848 original size:21 final size:22
Alignment explanation
Indices: 14663836--14663884 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
14663826 TATTATTTTT
* *
14663836 TTATTTATTTATATGTAATTAT
1 TTATTTATCTATATGTATTTAT
*
14663858 TT-TTTATCTATATGTATATAT
1 TTATTTATCTATATGTATTTAT
14663879 TTATTT
1 TTATTT
14663885 TAGTATACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (22 bp):
TTATTTATCTATATGTATTTAT
Found at i:14663849 original size:25 final size:27
Alignment explanation
Indices: 14663821--14663885 Score: 75
Period size: 25 Copynumber: 2.5 Consensus size: 27
14663811 TTGTAGTATA
*
14663821 ATATATATTATTTTTTTAT-T-TATTT
1 ATATATATTATTTTTTTATCTATATGT
*
14663846 ATATGTAATTA-TTTTTTATCTATATGT
1 ATATAT-ATTATTTTTTTATCTATATGT
14663873 ATATAT-TTATTTT
1 ATATATATTATTTT
14663886 AGTATACATA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
25 16 0.48
26 8 0.24
27 9 0.27
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (27 bp):
ATATATATTATTTTTTTATCTATATGT
Found at i:14677589 original size:22 final size:24
Alignment explanation
Indices: 14677561--14677604 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
14677551 AACGTTAACA
14677561 ATTAAAAA-AAA-AGTAATTCATC
1 ATTAAAAAGAAACAGTAATTCATC
*
14677583 ATTAAAAAGAAACCGTAATTCA
1 ATTAAAAAGAAACAGTAATTCA
14677605 AACAGAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
23 3 0.16
24 8 0.42
ACGTcount: A:0.57, C:0.11, G:0.07, T:0.25
Consensus pattern (24 bp):
ATTAAAAAGAAACAGTAATTCATC
Found at i:14679831 original size:28 final size:27
Alignment explanation
Indices: 14679770--14679828 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
14679760 TATACAAGTT
14679770 AATTTGAAAATTAAAAGAATTAATAAA
1 AATTTGAAAATTAAAAGAATTAATAAA
* *
14679797 AATTTGAAAATATAAAA-AATTAGTTAA
1 AATTTGAAAAT-TAAAAGAATTAATAAA
14679824 AATTT
1 AATTT
14679829 TGATTTTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 24 0.83
28 5 0.17
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (27 bp):
AATTTGAAAATTAAAAGAATTAATAAA
Found at i:14680709 original size:29 final size:30
Alignment explanation
Indices: 14680677--14680742 Score: 71
Period size: 31 Copynumber: 2.2 Consensus size: 30
14680667 AAAATTCCAG
*
14680677 ATATAAAATTGGAC-AAAATCAAAGTTCAT
1 ATATAAAATTGCACTAAAATCAAAGTTCAT
* * * *
14680706 ATATGATATTGCCCTTTAAATCAAAGTTCAT
1 ATATAAAATTGCAC-TAAAATCAAAGTTCAT
14680737 ATATAA
1 ATATAA
14680743 TTTTAATATT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
29 10 0.34
31 19 0.66
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.33
Consensus pattern (30 bp):
ATATAAAATTGCACTAAAATCAAAGTTCAT
Found at i:14680794 original size:39 final size:39
Alignment explanation
Indices: 14680732--14680842 Score: 124
Period size: 39 Copynumber: 2.9 Consensus size: 39
14680722 TAAATCAAAG
14680732 TTCATATATAATTTTAATA-TTTATCTTTTTTTTAAAAT-A
1 TTCAT-TAT-ATTTTAATATTTTATCTTTTTTTTAAAATAA
14680771 TTCATTATATTTTAGATATTTTATCTTTTTTTTCAAAATAA
1 TTCATTATATTTTA-ATATTTTATCTTTTTTTT-AAAATAA
* * *
14680812 GT-ATTAT-TTTTAATATATT-TCTTTTTCTTAA
1 TTCATTATATTTTAATATTTTATCTTTTTTTTAA
14680843 TTATTATTAA
Statistics
Matches: 65, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
36 2 0.03
37 15 0.23
38 12 0.18
39 24 0.37
40 10 0.15
41 2 0.03
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (39 bp):
TTCATTATATTTTAATATTTTATCTTTTTTTTAAAATAA
Found at i:14680801 original size:40 final size:39
Alignment explanation
Indices: 14680732--14680810 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 39
14680722 TAAATCAAAG
*
14680732 TTCATATATAATTTTAATATTTATCTTTTTTTTAAAATA
1 TTCATATATAATTTTAATATTTATCTTTTTTTCAAAATA
14680771 TTCAT-TAT-ATTTTAGATATTTTATCTTTTTTTTCAAAATA
1 TTCATATATAATTTTA-ATA-TTTATC-TTTTTTTCAAAATA
14680811 AGTATTATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
37 6 0.17
38 6 0.17
39 11 0.31
40 13 0.36
ACGTcount: A:0.33, C:0.06, G:0.01, T:0.59
Consensus pattern (39 bp):
TTCATATATAATTTTAATATTTATCTTTTTTTCAAAATA
Found at i:14681349 original size:18 final size:19
Alignment explanation
Indices: 14681312--14681349 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
14681302 TTAAAAATGT
*
14681312 AAATAAAAATATTTTTAAA
1 AAATAAAAATATTGTTAAA
*
14681331 AAATTAAAA-ATTGTTAAA
1 AAATAAAAATATTGTTAAA
14681349 A
1 A
14681350 GAGTATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (19 bp):
AAATAAAAATATTGTTAAA
Found at i:14690065 original size:22 final size:21
Alignment explanation
Indices: 14690027--14690067 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
14690017 TATAAAGTAT
**
14690027 ATAAAAAATTAGGAAAGTAAA
1 ATAAAAAATTAAAAAAGTAAA
14690048 ATAAAAAATATAAAAAAGTA
1 ATAAAAAAT-TAAAAAAGTA
14690068 TGTAGGTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.20
Consensus pattern (21 bp):
ATAAAAAATTAAAAAAGTAAA
Found at i:14691940 original size:43 final size:42
Alignment explanation
Indices: 14691889--14692016 Score: 152
Period size: 43 Copynumber: 3.0 Consensus size: 42
14691879 TAGGACTCCG
14691889 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACATCGGCATCGA
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACAT-GGCATC-A
*
14691933 CT-TGTGTTTTCGTGTAAGACC-CTGTCTGGGACAGTGGCATCA
1 ATATGTGTTTTCGTGTAAGACCAC-GTCTGGGACA-TGGCATCA
* * * *
14691975 ATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCATC
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGAC-ATGGCATC
14692017 TTACTAGCTT
Statistics
Matches: 73, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
42 3 0.04
43 67 0.92
44 3 0.04
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (42 bp):
ATATGTGTTTTCGTGTAAGACCACGTCTGGGACATGGCATCA
Found at i:14692775 original size:15 final size:15
Alignment explanation
Indices: 14692743--14692791 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
14692733 TACTTTAATC
14692743 ATGGATTAGTATTT-T
1 ATGG-TTAGTATTTAT
14692758 ATGGTTAGTATTTAT
1 ATGGTTAGTATTTAT
* *
14692773 ATGGTAATGTATATAT
1 ATGGTTA-GTATTTAT
14692789 ATG
1 ATG
14692792 TGCATGGTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
14 9 0.30
15 11 0.37
16 10 0.33
ACGTcount: A:0.31, C:0.00, G:0.20, T:0.49
Consensus pattern (15 bp):
ATGGTTAGTATTTAT
Found at i:14693248 original size:47 final size:47
Alignment explanation
Indices: 14693027--14693236 Score: 343
Period size: 47 Copynumber: 4.5 Consensus size: 47
14693017 GAGTAAATGA
*
14693027 ATGTATATGCTGTCAAATTTTGATGTACAAAAGCAGTCCAATTATAT
1 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTATAT
14693074 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTATAT
1 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTATAT
14693121 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTATAT
1 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTATAT
* *
14693168 ATGTATATGCTGTCAAATTTTAATGTATAAATGCAGTCCAAATT-T-T
1 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCC-AATTATAT
* *
14693214 GTATATATGCTGTCCAAATTTTG
1 ATGTATATGCTGT-CAAATTTTG
14693237 GTGTGAAAAT
Statistics
Matches: 155, Mismatches: 6, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
46 12 0.08
47 139 0.90
48 4 0.03
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.39
Consensus pattern (47 bp):
ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTATAT
Found at i:14693561 original size:2 final size:2
Alignment explanation
Indices: 14693554--14693588 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
14693544 GTTATGTGTT
*
14693554 TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14693589 TGAATGAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:14696862 original size:13 final size:13
Alignment explanation
Indices: 14696841--14696889 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 13
14696831 TAAACTAAAT
*
14696841 TTTTTAAAAGTAC
1 TTTTCAAAAGTAC
* *
14696854 TTCTCAAAAGTAT
1 TTTTCAAAAGTAC
* *
14696867 TTTTCCACAGTAC
1 TTTTCAAAAGTAC
14696880 TTTTCAAAAG
1 TTTTCAAAAG
14696890 CAATGAAGCA
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.35, C:0.16, G:0.08, T:0.41
Consensus pattern (13 bp):
TTTTCAAAAGTAC
Found at i:14696868 original size:26 final size:26
Alignment explanation
Indices: 14696839--14696889 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
14696829 TTTAAACTAA
*
14696839 ATTTTTTAAAAGTACTTCTCAAAAGT
1 ATTTTTCAAAAGTACTTCTCAAAAGT
* * *
14696865 ATTTTTCCACAGTACTTTTCAAAAG
1 ATTTTTCAAAAGTACTTCTCAAAAG
14696890 CAATGAAGCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.35, C:0.16, G:0.08, T:0.41
Consensus pattern (26 bp):
ATTTTTCAAAAGTACTTCTCAAAAGT
Found at i:14698779 original size:2 final size:2
Alignment explanation
Indices: 14698772--14698797 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14698762 CTTTGTTCAA
14698772 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
14698798 TAATTGAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14702565 original size:15 final size:15
Alignment explanation
Indices: 14702541--14702572 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
14702531 TATGCATGCA
*
14702541 AAATATAAAAGATAT
1 AAATACAAAAGATAT
14702556 AAATACAAAAGATAT
1 AAATACAAAAGATAT
14702571 AA
1 AA
14702573 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.03, G:0.06, T:0.22
Consensus pattern (15 bp):
AAATACAAAAGATAT
Found at i:14706551 original size:19 final size:19
Alignment explanation
Indices: 14706524--14706568 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
14706514 TTGCACCAAA
14706524 AAATCTTTAAATTATG-TTTT
1 AAAT-TTTAAA-TATGTTTTT
*
14706544 AAATTTTAAATCTGTTTTT
1 AAATTTTAAATATGTTTTT
14706563 AAATTT
1 AAATTT
14706569 GATACCCTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 3 0.13
19 16 0.70
20 4 0.17
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.56
Consensus pattern (19 bp):
AAATTTTAAATATGTTTTT
Found at i:14714648 original size:18 final size:18
Alignment explanation
Indices: 14714622--14714660 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
14714612 AATCAAAATT
14714622 TAAAAATCAAAATTAAAC
1 TAAAAATCAAAATTAAAC
* **
14714640 TAAAGATCAAGTTTAAAC
1 TAAAAATCAAAATTAAAC
14714658 TAA
1 TAA
14714661 TTATAGAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.59, C:0.10, G:0.05, T:0.26
Consensus pattern (18 bp):
TAAAAATCAAAATTAAAC
Found at i:14714736 original size:37 final size:37
Alignment explanation
Indices: 14714695--14714772 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
14714685 AAATAATTTG
* ** * *
14714695 ATCTTTATCCAACCATTTTTTAATTTTCAACCC-TTCA
1 ATCTTAATCCAACCAACTTTAAATCTTC-ACCCTTTCA
14714732 ATCTTAATCCAACCAACTTTAAATCTTCACCCTTTCA
1 ATCTTAATCCAACCAACTTTAAATCTTCACCCTTTCA
14714769 ATCT
1 ATCT
14714773 AGCCATCTTC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
36 4 0.11
37 31 0.89
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.41
Consensus pattern (37 bp):
ATCTTAATCCAACCAACTTTAAATCTTCACCCTTTCA
Found at i:14716501 original size:21 final size:21
Alignment explanation
Indices: 14716454--14716515 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
14716444 ACACAGGCTG
*
14716454 TTCACACGGGCGTGTGTC-CCC
1 TTCACACGGGCGTGTG-CGACC
* *
14716475 TCCACACGGGTGTGTGCGACC
1 TTCACACGGGCGTGTGCGACC
*
14716496 TTCACATGGGCGTGTG-GACC
1 TTCACACGGGCGTGTGCGACC
14716516 CCCACACAGC
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
20 5 0.15
21 29 0.85
ACGTcount: A:0.13, C:0.32, G:0.32, T:0.23
Consensus pattern (21 bp):
TTCACACGGGCGTGTGCGACC
Found at i:14716538 original size:16 final size:16
Alignment explanation
Indices: 14716517--14716549 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
14716507 GTGTGGACCC
14716517 CCACACAGCCTGGGCA
1 CCACACAGCCTGGGCA
14716533 CCACACAGCCTGGGCA
1 CCACACAGCCTGGGCA
14716549 C
1 C
14716550 TTCCATACGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.45, G:0.24, T:0.06
Consensus pattern (16 bp):
CCACACAGCCTGGGCA
Found at i:14717792 original size:34 final size:34
Alignment explanation
Indices: 14717746--14717815 Score: 124
Period size: 34 Copynumber: 2.1 Consensus size: 34
14717736 TCCTAGCCCG
14717746 GGTTTTAGGGCGTTACAAGATATTTAAAGATTTT
1 GGTTTTAGGGCGTTACAAGATATTTAAAGATTTT
14717780 GGTTTT-GAGGCGTTACAAGATATTTAAAGATTTT
1 GGTTTTAG-GGCGTTACAAGATATTTAAAGATTTT
14717814 GG
1 GG
14717816 CATATTCCCT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 1 0.03
34 34 0.97
ACGTcount: A:0.29, C:0.06, G:0.26, T:0.40
Consensus pattern (34 bp):
GGTTTTAGGGCGTTACAAGATATTTAAAGATTTT
Found at i:14719949 original size:27 final size:27
Alignment explanation
Indices: 14719918--14720232 Score: 264
Period size: 27 Copynumber: 11.7 Consensus size: 27
14719908 AGAGGTCAGT
* *
14719918 AAATGACTGAATTACCCCCACAGGGTA
1 AAATGACTGAAATACCCCCATAGGGTA
* * * *
14719945 AAATGACCGAATTATCCCCACAGGGTA
1 AAATGACTGAAATACCCCCATAGGGTA
* * * *
14719972 AAATGAC-CAAATTACCTCCACAAGGTA
1 AAATGACTGAAA-TACCCCCATAGGGTA
* ** *
14719999 AAATGA-TCGAAATAACCTTACAGGGTA
1 AAATGACT-GAAATACCCCCATAGGGTA
* * *
14720026 AAATGA-TCAAAATACCCCTACAGGGTA
1 AAATGACT-GAAATACCCCCATAGGGTA
*
14720053 AAATGA-TCGGAATACCCCCATAGGGTA
1 AAATGACT-GAAATACCCCCATAGGGTA
* * *
14720080 AAATGGCCGAAATACCCCCATAAGGTA
1 AAATGACTGAAATACCCCCATAGGGTA
* * *
14720107 AAATGACTGGAATACCCCTATAAGGTA
1 AAATGACTGAAATACCCCCATAGGGTA
* * *
14720134 AAATGA-TCGGAATACCCCTATAAGGTA
1 AAATGACT-GAAATACCCCCATAGGGTA
*
14720161 AAATGACTGAAGTACCCCCATAGGGTA
1 AAATGACTGAAATACCCCCATAGGGTA
**
14720188 AAATGACCAAAATACCCCCATAGGGTA
1 AAATGACTGAAATACCCCCATAGGGTA
14720215 AAATGACT-AATATACCCC
1 AAATGACTGAA-ATACCCC
14720233 TAGGAGATGA
Statistics
Matches: 245, Mismatches: 36, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
26 5 0.02
27 236 0.96
28 4 0.02
ACGTcount: A:0.41, C:0.23, G:0.17, T:0.19
Consensus pattern (27 bp):
AAATGACTGAAATACCCCCATAGGGTA
Found at i:14720222 original size:54 final size:53
Alignment explanation
Indices: 14719930--14720232 Score: 293
Period size: 54 Copynumber: 5.6 Consensus size: 53
14719920 ATGACTGAAT
* * * * *
14719930 TACCCCCACAGGGTAAAATGACCGAATTATCCCCACAGGGTAAAATGACCAAAT
1 TACCCCCACAAGGTAAAATGACTGAA-TACCCCCATAGGGTAAAATGACCAAAA
* * ** * *
14719984 TACCTCCACAAGGTAAAATGA-TCGAAATAACCTTACAGGGTAAAATGATCAAAA
1 TACCCCCACAAGGTAAAATGACT-G-AATACCCCCATAGGGTAAAATGACCAAAA
* * * * *
14720038 TACCCCTACAGGGTAAAATGATCGGAATACCCCCATAGGGTAAAATGGCCGAAA
1 TACCCCCACAAGGTAAAATGA-CTGAATACCCCCATAGGGTAAAATGACCAAAA
* * * * **
14720092 TACCCCCATAAGGTAAAATGACTGGAATACCCCTATAAGGTAAAATGATCGGAA
1 TACCCCCACAAGGTAAAATGACT-GAATACCCCCATAGGGTAAAATGACCAAAA
* *
14720146 TACCCCTATAAGGTAAAATGACTGAAGTACCCCCATAGGGTAAAATGACCAAAA
1 TACCCCCACAAGGTAAAATGACTGAA-TACCCCCATAGGGTAAAATGACCAAAA
* * *
14720200 TACCCCCATAGGGTAAAATGACTAATATACCCC
1 TACCCCCACAAGGTAAAATGACTGA-ATACCCC
14720233 TAGGAGATGA
Statistics
Matches: 205, Mismatches: 37, Indels: 14
0.80 0.14 0.05
Matches are distributed among these distances:
53 4 0.02
54 197 0.96
55 4 0.02
ACGTcount: A:0.41, C:0.23, G:0.17, T:0.19
Consensus pattern (53 bp):
TACCCCCACAAGGTAAAATGACTGAATACCCCCATAGGGTAAAATGACCAAAA
Found at i:14720230 original size:81 final size:81
Alignment explanation
Indices: 14719918--14720234 Score: 309
Period size: 81 Copynumber: 3.9 Consensus size: 81
14719908 AGAGGTCAGT
* * * * *
14719918 AAATGACTGAATTACCCCCACAGGGTAAAATGACCGAATTATCCCCACAGGGTAAAATGA-CCAA
1 AAATGACTGAAATACCCCCACAGGGTAAAATGACCAAAATACCCCCACAGGGTAAAATGATCGAA
*
14719982 ATTACCTCC-ACAAGGTA
66 A-TACC-CCTATAAGGTA
* ** * * *
14719999 AAATGA-TCGAAATAACCTTACAGGGTAAAATGATCAAAATACCCCTACAGGGTAAAATGATCGG
1 AAATGACT-GAAATACCCCCACAGGGTAAAATGACCAAAATACCCCCACAGGGTAAAATGATCGA
* *
14720063 AATACCCCCATAGGGTA
65 AATACCCCTATAAGGTA
* * * * *** * * * *
14720080 AAATGGCCGAAATACCCCCATAAGGTAAAATGACTGGAATACCCCTATAAGGTAAAATGATCGGA
1 AAATGACTGAAATACCCCCACAGGGTAAAATGACCAAAATACCCCCACAGGGTAAAATGATCGAA
14720145 ATACCCCTATAAGGTA
66 ATACCCCTATAAGGTA
* * * *
14720161 AAATGACTGAAGTACCCCCATAGGGTAAAATGACCAAAATACCCCCATAGGGTAAAATGA-CTAA
1 AAATGACTGAAATACCCCCACAGGGTAAAATGACCAAAATACCCCCACAGGGTAAAATGATCGAA
14720225 TATACCCCTA
66 -ATACCCCTA
14720235 GGAGATGAAA
Statistics
Matches: 192, Mismatches: 39, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
80 5 0.03
81 184 0.96
82 3 0.02
ACGTcount: A:0.41, C:0.23, G:0.17, T:0.19
Consensus pattern (81 bp):
AAATGACTGAAATACCCCCACAGGGTAAAATGACCAAAATACCCCCACAGGGTAAAATGATCGAA
ATACCCCTATAAGGTA
Found at i:14720413 original size:26 final size:26
Alignment explanation
Indices: 14720384--14720490 Score: 153
Period size: 26 Copynumber: 4.1 Consensus size: 26
14720374 TGGAGGAAGT
*
14720384 ATACTGTTACTGGTAGTTTTGCTGCG
1 ATACTGTTACTGGCAGTTTTGCTGCG
14720410 ATACTGTTACTGGCAGTTTTGCTGCG
1 ATACTGTTACTGGCAGTTTTGCTGCG
* *
14720436 ATACTGTTATTGAG-GGTTTTGCTGCG
1 ATACTGTTACTG-GCAGTTTTGCTGCG
* *
14720462 ATACTATTACTGGCAGCTTTGCTGCG
1 ATACTGTTACTGGCAGTTTTGCTGCG
14720488 ATA
1 ATA
14720491 TTGGTGTGTT
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
25 1 0.01
26 70 0.97
27 1 0.01
ACGTcount: A:0.18, C:0.17, G:0.26, T:0.39
Consensus pattern (26 bp):
ATACTGTTACTGGCAGTTTTGCTGCG
Found at i:14723927 original size:64 final size:64
Alignment explanation
Indices: 14723757--14723929 Score: 238
Period size: 64 Copynumber: 2.7 Consensus size: 64
14723747 AGACGCCCAT
* * * * * *
14723757 AAAGAGCTGTGGTATGTCTACAATACATGTAGGATCAATACCAATCATATAACAGGACACTCAC
1 AAAGAGTTGCGGTATGTCCACAACACATGCAGGATCAATACCGATCATATAACAGGACACTCAC
* ** *
14723821 AAAGAGTTGCTGTATGTCCACAACACATGCAGGATCAATACCGATCATATAACAGGATGCTTAC
1 AAAGAGTTGCGGTATGTCCACAACACATGCAGGATCAATACCGATCATATAACAGGACACTCAC
* *
14723885 AAAGAGTTGCGGTATGTCCGCAACACATGCATGATCAATACCGAT
1 AAAGAGTTGCGGTATGTCCACAACACATGCAGGATCAATACCGAT
14723930 GGGGATGCTC
Statistics
Matches: 96, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
64 96 1.00
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.23
Consensus pattern (64 bp):
AAAGAGTTGCGGTATGTCCACAACACATGCAGGATCAATACCGATCATATAACAGGACACTCAC
Found at i:14727911 original size:10 final size:10
Alignment explanation
Indices: 14727896--14727921 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
14727886 GTACAAATTG
14727896 TGATGTGAAT
1 TGATGTGAAT
14727906 TGATGTGAAT
1 TGATGTGAAT
14727916 TGATGT
1 TGATGT
14727922 TTATGAATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.31, T:0.42
Consensus pattern (10 bp):
TGATGTGAAT
Found at i:14729296 original size:31 final size:31
Alignment explanation
Indices: 14729261--14729319 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
14729251 AAGCATGTTT
*
14729261 TTAAGTTATTTATAATGTTGACTAAGGTATG
1 TTAAGTTATTTAAAATGTTGACTAAGGTATG
* *
14729292 TTAAGTTGTTTAAAATGTTGTCTAAGGT
1 TTAAGTTATTTAAAATGTTGACTAAGGT
14729320 GTTTAAGACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.31, C:0.03, G:0.20, T:0.46
Consensus pattern (31 bp):
TTAAGTTATTTAAAATGTTGACTAAGGTATG
Found at i:14730458 original size:20 final size:20
Alignment explanation
Indices: 14730433--14730472 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
14730423 CGTAAAATGA
*
14730433 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
14730453 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
14730473 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:14730462 original size:34 final size:35
Alignment explanation
Indices: 14730418--14730484 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
14730408 CAGTAAAATA
*
14730418 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
14730452 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
14730485 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:14730488 original size:14 final size:15
Alignment explanation
Indices: 14730412--14730488 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
14730402 GATTGCCAGT
* *
14730412 AAAAT-ATTTTCCGT
1 AAAATGATTTTCTGG
14730426 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
14730440 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
14730460 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
14730475 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
14730489 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 24 0.48
15 12 0.24
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:14736253 original size:5 final size:6
Alignment explanation
Indices: 14736236--14736260 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
14736226 AGCCATTAAA
14736236 TCTTTT TCTTTT TCTTTT TCTTTT T
1 TCTTTT TCTTTT TCTTTT TCTTTT T
14736261 TTCTAAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TCTTTT
Found at i:14736454 original size:9 final size:9
Alignment explanation
Indices: 14736425--14736454 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
14736415 GAATTTTTAC
14736425 AATTCGAAT
1 AATTCGAAT
*
14736434 AACTCGAAT
1 AATTCGAAT
14736443 AATTCGAAT
1 AATTCGAAT
14736452 AAT
1 AAT
14736455 ATATTAGTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.47, C:0.13, G:0.10, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:14736583 original size:20 final size:19
Alignment explanation
Indices: 14736539--14736604 Score: 71
Period size: 19 Copynumber: 3.4 Consensus size: 19
14736529 TACAAAACAA
14736539 TCAAAATAATTTTCAAAAAT
1 TCAAAATAATTTT-AAAAAT
** *
14736559 AAAAAATAATTTTTAAAAT
1 TCAAAATAATTTTAAAAAT
14736578 TCAAAAT-ATTTATAAAAAT
1 TCAAAATAATTT-TAAAAAT
14736597 TCTAAAAT
1 TC-AAAAT
14736605 TTGTATTTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
18 4 0.11
19 18 0.47
20 16 0.42
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (19 bp):
TCAAAATAATTTTAAAAAT
Found at i:14736765 original size:3 final size:3
Alignment explanation
Indices: 14736757--14736804 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
14736747 TACTAAAATA
14736757 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14736805 GCTTTCAAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:14737055 original size:21 final size:21
Alignment explanation
Indices: 14737029--14737068 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14737019 ACTTTATCTA
*
14737029 AAGTTAAAAATCAAAACTATC
1 AAGTTAAAAAGCAAAACTATC
*
14737050 AAGTTAAAAGGCAAAACTA
1 AAGTTAAAAAGCAAAACTA
14737069 CGTTGTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.12, G:0.10, T:0.20
Consensus pattern (21 bp):
AAGTTAAAAAGCAAAACTATC
Found at i:14744328 original size:22 final size:23
Alignment explanation
Indices: 14744296--14744371 Score: 88
Period size: 22 Copynumber: 3.4 Consensus size: 23
14744286 AACTAATCCT
*
14744296 CTCTCAAATTTGCTCTCAATTTC
1 CTCTCAAATTTCCTCTCAATTTC
*
14744319 CTCT-AAATTTCCTCTCAATTTG
1 CTCTCAAATTTCCTCTCAATTTC
14744341 CTCTCAAA-TTCCT-TCCAAATTT-
1 CTCTCAAATTTCCTCT-C-AATTTC
14744363 CTCTCAAAT
1 CTCTCAAAT
14744372 CCATATTTAA
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
21 1 0.02
22 34 0.72
23 12 0.26
ACGTcount: A:0.25, C:0.30, G:0.03, T:0.42
Consensus pattern (23 bp):
CTCTCAAATTTCCTCTCAATTTC
Found at i:14744341 original size:33 final size:33
Alignment explanation
Indices: 14744295--14744369 Score: 107
Period size: 33 Copynumber: 2.2 Consensus size: 33
14744285 AAACTAATCC
* *
14744295 TCTCTCAAATTTGCTCTCAATTTCC-TCTAAATT
1 TCTCTC-AATTTGCTCTCAAATTCCTTCCAAATT
14744328 TCCTCTCAATTTGCTCTCAAATTCCTTCCAAATT
1 T-CTCTCAATTTGCTCTCAAATTCCTTCCAAATT
14744362 TCTCTCAA
1 TCTCTCAA
14744370 ATCCATATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
33 25 0.66
34 13 0.34
ACGTcount: A:0.24, C:0.31, G:0.03, T:0.43
Consensus pattern (33 bp):
TCTCTCAATTTGCTCTCAAATTCCTTCCAAATT
Found at i:14744370 original size:11 final size:11
Alignment explanation
Indices: 14744295--14744371 Score: 72
Period size: 11 Copynumber: 6.9 Consensus size: 11
14744285 AAACTAATCC
14744295 TCTCTCAAATT
1 TCTCTCAAATT
14744306 TGCTCTC-AATT
1 T-CTCTCAAATT
14744317 TC-CTCTAAATT
1 TCTCTC-AAATT
14744328 TCCTCTC-AATT
1 T-CTCTCAAATT
14744339 TGCTCTCAAATT
1 T-CTCTCAAATT
*
14744351 CCT-TCCAAATT
1 TCTCT-CAAATT
14744362 TCTCTCAAAT
1 TCTCTCAAAT
14744372 CCATATTTAA
Statistics
Matches: 55, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
9 3 0.05
10 2 0.04
11 36 0.65
12 11 0.20
13 3 0.05
ACGTcount: A:0.25, C:0.30, G:0.03, T:0.43
Consensus pattern (11 bp):
TCTCTCAAATT
Found at i:14744388 original size:51 final size:51
Alignment explanation
Indices: 14744331--14744430 Score: 130
Period size: 51 Copynumber: 2.0 Consensus size: 51
14744321 CTAAATTTCC
* *
14744331 TCTCAATTTGCTCTCAAATTCCT-TCCAAATTTCTCTCAAATCCATATTTAA
1 TCTCAATTTACTCTCAAATTCCTCT-CAAATTTCTATCAAATCCATATTTAA
* * * *
14744382 TCTCAATTTACTCTCAAGTTCCTCTTAAATTTCTATTAAATCCCTATTT
1 TCTCAATTTACTCTCAAATTCCTCTCAAATTTCTATCAAATCCATATTT
14744431 TTAAATAATT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
51 41 0.98
52 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.02, T:0.44
Consensus pattern (51 bp):
TCTCAATTTACTCTCAAATTCCTCTCAAATTTCTATCAAATCCATATTTAA
Found at i:14746263 original size:18 final size:18
Alignment explanation
Indices: 14746240--14746279 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
14746230 CAGGTGCGTT
*
14746240 TCCTAACCCTTTTATGTA
1 TCCTAACCCTTATATGTA
*
14746258 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
14746276 TCCT
1 TCCT
14746280 TTTCCGAGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.30, G:0.05, T:0.45
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:14748881 original size:127 final size:125
Alignment explanation
Indices: 14748451--14748942 Score: 691
Period size: 126 Copynumber: 3.9 Consensus size: 125
14748441 CCCAAACATG
* * *
14748451 CTACTATAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTTTCATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
* * ** * * *
14748516 TAGAAGCG-ATTTTATTCTATTTGCTCAAAAACGTCAAGTCGAAATTATTTTTCCAAGAC
66 TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
* * *
14748575 CTACTGTAGCAAAAGCGCGTCCGCGAGGACGCGATTTCACAAATTTTTCTCA-AATAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTG
* * * * * *
14748639 CTTGCAGCGTTGTTTTATACTATCTGCTCAGAAATGTCAACTCAAAATTATTTTTTCAGGAC
65 CTTGAAGCGTT-TTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
*
14748701 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
* *
14748766 TTGAAACAGTTTTTTAAACTATTTGCTCAGAAACATCAACTCGAAATTATTTCTTCCAGGAC
66 TTGAAGC-GTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTT-TTCCAGGAC
* * * * *
14748828 CAACTGTAGCAAAAGCGCGTCCATGAGGGCACAATTTCACAAATTCTTCTCATAAAGTATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
14748893 TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATT
66 TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATT
14748943 NNNNNNNNNN
Statistics
Matches: 325, Mismatches: 37, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
123 2 0.01
124 62 0.19
126 183 0.56
127 78 0.24
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
Found at i:14751004 original size:25 final size:24
Alignment explanation
Indices: 14750967--14751021 Score: 56
Period size: 24 Copynumber: 2.2 Consensus size: 24
14750957 ATATATAAAT
* * **
14750967 AGGTAAGGGGTTACAAGAAGATGAA
1 AGGTGAGGAGTTA-AAGAAGACAAA
*
14750992 AGGTGAGGAGTTAAGGAAGACAAA
1 AGGTGAGGAGTTAAAGAAGACAAA
14751016 AGGTGA
1 AGGTGA
14751022 AAGGTTGATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 14 0.56
25 11 0.44
ACGTcount: A:0.44, C:0.04, G:0.38, T:0.15
Consensus pattern (24 bp):
AGGTGAGGAGTTAAAGAAGACAAA
Found at i:14752199 original size:15 final size:15
Alignment explanation
Indices: 14752175--14752205 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14752165 ATATATTATG
14752175 ACTTGCTATTATGCT
1 ACTTGCTATTATGCT
*
14752190 ACTTGTTATTATGCT
1 ACTTGCTATTATGCT
14752205 A
1 A
14752206 ACATGTACTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.16, G:0.13, T:0.48
Consensus pattern (15 bp):
ACTTGCTATTATGCT
Found at i:14757151 original size:42 final size:41
Alignment explanation
Indices: 14757103--14757193 Score: 105
Period size: 41 Copynumber: 2.2 Consensus size: 41
14757093 TAAGAAAATA
*
14757103 TTGTGGAGTT-ATCATT-GAAAACAACCTTCCATAATGGGAAGG
1 TTGTGGAGTTAAT-ATTAG-AAACAA-ATTCCATAATGGGAAGG
* * *
14757145 TTGTGGAGTTAATATTAGGAACAAATTTCATATTGGGAAGG
1 TTGTGGAGTTAATATTAGAAACAAATTCCATAATGGGAAGG
14757186 TTGTGGAG
1 TTGTGGAG
14757194 AAAACTTTGG
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
41 22 0.51
42 18 0.42
43 3 0.07
ACGTcount: A:0.32, C:0.09, G:0.27, T:0.32
Consensus pattern (41 bp):
TTGTGGAGTTAATATTAGAAACAAATTCCATAATGGGAAGG
Found at i:14759225 original size:20 final size:20
Alignment explanation
Indices: 14759200--14759258 Score: 118
Period size: 20 Copynumber: 3.0 Consensus size: 20
14759190 CGGAAAATAA
14759200 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
14759220 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
14759240 TTTCTGGAAAATGATTTAC
1 TTTCTGGAAAATGATTTAC
14759259 AATAAATATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.44
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:14760661 original size:32 final size:32
Alignment explanation
Indices: 14760625--14760704 Score: 90
Period size: 32 Copynumber: 2.5 Consensus size: 32
14760615 TGTCAATCAT
* *
14760625 TTCAATATCCAATAAGCTT-AAAACATAATAAA
1 TTCAATATCCAACAA-ATTCAAAACATAATAAA
* * *
14760657 TTCAATATCTAACAAATTCAAGACATAATAAT
1 TTCAATATCCAACAAATTCAAAACATAATAAA
*
14760689 TTCAAAATCCAACAAA
1 TTCAATATCCAACAAA
14760705 CTAAAATTTC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
31 2 0.05
32 38 0.95
ACGTcount: A:0.53, C:0.17, G:0.03, T:0.28
Consensus pattern (32 bp):
TTCAATATCCAACAAATTCAAAACATAATAAA
Found at i:14764223 original size:15 final size:15
Alignment explanation
Indices: 14764203--14764236 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
14764193 AGGAATCTAA
14764203 TAACCATAAAGATGC
1 TAACCATAAAGATGC
14764218 TAACCATAAAGATGC
1 TAACCATAAAGATGC
14764233 TAAC
1 TAAC
14764237 TTTGTGGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.47, C:0.21, G:0.12, T:0.21
Consensus pattern (15 bp):
TAACCATAAAGATGC
Found at i:14771289 original size:42 final size:42
Alignment explanation
Indices: 14771237--14771326 Score: 126
Period size: 42 Copynumber: 2.1 Consensus size: 42
14771227 ACGGCCTAGC
* *
14771237 ACACTGCCTGGCACACAGTCATGTCACCCAAGTCAGAGAGTT
1 ACACGGCCTGGCACACAGCCATGTCACCCAAGTCAGAGAGTT
* * * *
14771279 ACACGGCCTGGCACACGGCCGTGTGACCCAAGTTAGAGAGTT
1 ACACGGCCTGGCACACAGCCATGTCACCCAAGTCAGAGAGTT
14771321 ACACGG
1 ACACGG
14771327 GCATGGACAT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.27, C:0.30, G:0.27, T:0.17
Consensus pattern (42 bp):
ACACGGCCTGGCACACAGCCATGTCACCCAAGTCAGAGAGTT
Found at i:14802773 original size:30 final size:30
Alignment explanation
Indices: 14802737--14802793 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
14802727 TGGGCATTTT
* * *
14802737 CACACGGGTTGGATGCAAGCCCATGTGTGC
1 CACACGGGCTAGATACAAGCCCATGTGTGC
*
14802767 CACACGGGCTAGATACACGCCCATGTG
1 CACACGGGCTAGATACAAGCCCATGTG
14802794 CCAGCCCATG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.18
Consensus pattern (30 bp):
CACACGGGCTAGATACAAGCCCATGTGTGC
Found at i:14806200 original size:19 final size:19
Alignment explanation
Indices: 14806173--14806212 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
14806163 TAAGATTAAT
* *
14806173 TTTAGTTAATCTTAATTAG
1 TTTACTTAATCATAATTAG
*
14806192 TTTACTTAATCATGATTAG
1 TTTACTTAATCATAATTAG
14806211 TT
1 TT
14806213 AAACTCTAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.30, C:0.07, G:0.10, T:0.53
Consensus pattern (19 bp):
TTTACTTAATCATAATTAG
Found at i:14810478 original size:15 final size:15
Alignment explanation
Indices: 14810458--14810493 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
14810448 AACCTACAGC
*
14810458 TGAGGAAGACGAACT
1 TGAGGAAGACGAAAT
*
14810473 TGAGGAAGAGGAAAT
1 TGAGGAAGACGAAAT
14810488 TGAGGA
1 TGAGGA
14810494 GGAAAATGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.39, T:0.14
Consensus pattern (15 bp):
TGAGGAAGACGAAAT
Found at i:14814001 original size:2 final size:2
Alignment explanation
Indices: 14813994--14814026 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
14813984 CTTAATTAGC
14813994 TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14814027 GGGCTAAGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14815135 original size:16 final size:16
Alignment explanation
Indices: 14815097--14815135 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
14815087 TGGCAATAGC
* *
14815097 AAAGAAAGCAAAAACG
1 AAAGAAAGAAAAAACA
*
14815113 AATGAAAGAAAAAACA
1 AAAGAAAGAAAAAACA
14815129 AAAGAAA
1 AAAGAAA
14815136 AGAACTCAGC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.74, C:0.08, G:0.15, T:0.03
Consensus pattern (16 bp):
AAAGAAAGAAAAAACA
Found at i:14819635 original size:16 final size:16
Alignment explanation
Indices: 14819597--14819635 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
14819587 TGGCAGTAGC
* *
14819597 AAAGAAAGCAAAAACG
1 AAAGAAAGAAAAAACA
*
14819613 AATGAAAGAAAAAACA
1 AAAGAAAGAAAAAACA
14819629 AAAGAAA
1 AAAGAAA
14819636 AGAACTCAGC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.74, C:0.08, G:0.15, T:0.03
Consensus pattern (16 bp):
AAAGAAAGAAAAAACA
Found at i:14830061 original size:30 final size:30
Alignment explanation
Indices: 14830025--14830102 Score: 138
Period size: 30 Copynumber: 2.6 Consensus size: 30
14830015 TTCGGCTATC
14830025 AATTATGAAAAGGGATGGTGACAACCATCA
1 AATTATGAAAAGGGATGGTGACAACCATCA
* *
14830055 AATTATGAAAAGGGATGGTGACGACCATTA
1 AATTATGAAAAGGGATGGTGACAACCATCA
14830085 AATTATGAAAAGGGATGG
1 AATTATGAAAAGGGATGG
14830103 CTTCAGGTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.42, C:0.09, G:0.27, T:0.22
Consensus pattern (30 bp):
AATTATGAAAAGGGATGGTGACAACCATCA
Found at i:14830122 original size:30 final size:29
Alignment explanation
Indices: 14830088--14830192 Score: 131
Period size: 30 Copynumber: 3.5 Consensus size: 29
14830078 ACCATTAAAT
*
14830088 TATGAAAAGGGATGGCTTCAGG-TATCGTAC
1 TATGAAAAGGGATGGCTT-TGGCTATCG-AC
*
14830118 TATGAAAAGAGATGGCTTTGGCTATCGATC
1 TATGAAAAGGGATGGCTTTGGCTATCGA-C
* *
14830148 TATGAAAAGGGATGGCTTTGGCTATCAAAT
1 TATGAAAAGGGATGGCTTTGGCTATC-GAC
14830178 TATGAAAAGGGATGG
1 TATGAAAAGGGATGG
14830193 TGACGACCAT
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
29 3 0.04
30 63 0.94
31 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (29 bp):
TATGAAAAGGGATGGCTTTGGCTATCGAC
Found at i:14830235 original size:60 final size:60
Alignment explanation
Indices: 14830028--14830237 Score: 167
Period size: 60 Copynumber: 3.5 Consensus size: 60
14830018 GGCTATCAAT
** ** *
14830028 TATGAAAAGGGATGG-TGACAACCATCAAATTATGAAAAGGGATGGTGACGACCATTAAAT
1 TATGAAAAGGGATGGCT-ATGACCATCAAATTATGAAAAGGGATGGTGACGACCATCGAAC
* ** ** * * ** * * *
14830088 TATGAAAAGGGATGGCT-TCAGGTATCGTACTATGAAAAGAGATGGCT-TTGGCTATCGATC
1 TATGAAAAGGGATGGCTATGA-CCATCAAATTATGAAAAGGGATGG-TGACGACCATCGAAC
* * *
14830148 TATGAAAAGGGATGGCTTTGGCTATCAAATTATGAAAAGGGATGGTGACGACCATCGAAC
1 TATGAAAAGGGATGGCTATGACCATCAAATTATGAAAAGGGATGGTGACGACCATCGAAC
*
14830208 AATGAAAAGGGATGG-TGATGACCATCAAAT
1 TATGAAAAGGGATGGCT-ATGACCATCAAAT
14830238 GTGAAAAAGG
Statistics
Matches: 112, Mismatches: 32, Indels: 12
0.72 0.21 0.08
Matches are distributed among these distances:
59 3 0.03
60 106 0.95
61 3 0.03
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.24
Consensus pattern (60 bp):
TATGAAAAGGGATGGCTATGACCATCAAATTATGAAAAGGGATGGTGACGACCATCGAAC
Found at i:14836639 original size:16 final size:16
Alignment explanation
Indices: 14836618--14836648 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14836608 GTTTGCATTA
*
14836618 TTTTAATATTAAATAC
1 TTTTAAAATTAAATAC
14836634 TTTTAAAATTAAATA
1 TTTTAAAATTAAATA
14836649 ATATTCATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (16 bp):
TTTTAAAATTAAATAC
Found at i:14836756 original size:23 final size:23
Alignment explanation
Indices: 14836708--14836757 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
14836698 TAATTACATT
* * *
14836708 AATTTTTTAATAATTTTTAAATA
1 AATTTATTAATAAATTTTAAAAA
14836731 AATTTATTAA-AAATTTTAAACAA
1 AATTTATTAATAAATTTTAAA-AA
14836754 AATT
1 AATT
14836758 AATGTTTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
AATTTATTAATAAATTTTAAAAA
Found at i:14839332 original size:2 final size:2
Alignment explanation
Indices: 14839325--14839360 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
14839315 CTCAACCATT
14839325 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14839361 GCAAGTTAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:14840984 original size:2 final size:2
Alignment explanation
Indices: 14840931--14840969 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
14840921 ACAAAAGTTA
14840931 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14840970 AACCCAAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:14846130 original size:23 final size:23
Alignment explanation
Indices: 14846096--14846253 Score: 109
Period size: 23 Copynumber: 6.9 Consensus size: 23
14846086 GAACTTACCC
* *
14846096 CAAAGAGATTACAGCATACGCCA
1 CAAAGACATTACAGAATACGCCA
* * *
14846119 TAAAGACGTTACAGAATATGCCA
1 CAAAGACATTACAGAATACGCCA
* **
14846142 CATAGACATTACCTAATACGCCA
1 CAAAGACATTACAGAATACGCCA
* **
14846165 CAAAGACATTACAAAATATACCA
1 CAAAGACATTACAGAATACGCCA
* * * *
14846188 CAAAGCCATTATAGTATACGCTA
1 CAAAGACATTACAGAATACGCCA
* * * * *
14846211 CATAGGCATTTCATAATATGCCA
1 CAAAGACATTACAGAATACGCCA
* * *
14846234 TAAAGGCATTGCAGAATACG
1 CAAAGACATTACAGAATACG
14846254 TAACATAGGT
Statistics
Matches: 99, Mismatches: 36, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
23 99 1.00
ACGTcount: A:0.42, C:0.22, G:0.14, T:0.22
Consensus pattern (23 bp):
CAAAGACATTACAGAATACGCCA
Found at i:14846161 original size:46 final size:46
Alignment explanation
Indices: 14846111--14846198 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 46
14846101 AGATTACAGC
* * * * *
14846111 ATACGCCATAAAGACGTTACAGAATATGCCACATAGACATTACCTA
1 ATACGCCACAAAGACATTACAAAATATACCACAAAGACATTACCTA
*
14846157 ATACGCCACAAAGACATTACAAAATATACCACAAAGCCATTA
1 ATACGCCACAAAGACATTACAAAATATACCACAAAGACATTA
14846199 TAGTATACGC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 36 1.00
ACGTcount: A:0.45, C:0.25, G:0.10, T:0.19
Consensus pattern (46 bp):
ATACGCCACAAAGACATTACAAAATATACCACAAAGACATTACCTA
Found at i:14846229 original size:46 final size:46
Alignment explanation
Indices: 14846171--14846275 Score: 113
Period size: 46 Copynumber: 2.3 Consensus size: 46
14846161 GCCACAAAGA
* * *
14846171 CATTACAAAATATACCACAAAGCCATTATAGTATACGCT-ACATAGG
1 CATTTCAAAATATACCACAAAGCCATTACAGAATACG-TAACATAGG
* * * * *
14846217 CATTTCATAATATGCCATAAAGGCATTGCAGAATACGTAACATAGG
1 CATTTCAAAATATACCACAAAGCCATTACAGAATACGTAACATAGG
*
14846263 TATTTCAAAATAT
1 CATTTCAAAATAT
14846276 CTTGCATAAA
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
45 1 0.02
46 47 0.98
ACGTcount: A:0.42, C:0.18, G:0.12, T:0.28
Consensus pattern (46 bp):
CATTTCAAAATATACCACAAAGCCATTACAGAATACGTAACATAGG
Found at i:14861794 original size:2 final size:2
Alignment explanation
Indices: 14861787--14861819 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
14861777 ACTAAATTAC
14861787 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14861820 ACAAAACTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14862016 original size:17 final size:17
Alignment explanation
Indices: 14861994--14862026 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14861984 AATAGTAAAA
14861994 TATAAA-TATGAAATTAT
1 TATAAATTAT-AAATTAT
14862011 TATAAATTATAAATTA
1 TATAAATTATAAATTA
14862027 CAATCTACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (17 bp):
TATAAATTATAAATTAT
Found at i:14865972 original size:90 final size:90
Alignment explanation
Indices: 14865820--14866005 Score: 246
Period size: 90 Copynumber: 2.1 Consensus size: 90
14865810 TCTAGCAGAA
* * * * ** * *
14865820 TATTAATCTTCAAATCTGGTGGTTCATCCACATATTATCTGTTAGCTATTATCTGCAATTATGTT
1 TATTAAACTGCAAAACTGGTGGTTCATCCACACATTATCTGACAACTATTATCTACAATTATGTT
*
14865885 GTGTATTCACAACCATGTAGCAACG
66 GTGTATTCACAACCATCTAGCAACG
* * *
14865910 TATTAAACTGCAAAACTGGTGGTTCATCCACCCATTATCTGACAACTTTTATCTACATTTATGTT
1 TATTAAACTGCAAAACTGGTGGTTCATCCACACATTATCTGACAACTATTATCTACAATTATGTT
* *
14865975 GTGTATTCACAACCATCTGGTAACG
66 GTGTATTCACAACCATCTAGCAACG
14866000 TATTAA
1 TATTAA
14866006 CCGCAACTTT
Statistics
Matches: 82, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
90 82 1.00
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.38
Consensus pattern (90 bp):
TATTAAACTGCAAAACTGGTGGTTCATCCACACATTATCTGACAACTATTATCTACAATTATGTT
GTGTATTCACAACCATCTAGCAACG
Found at i:14868120 original size:9 final size:9
Alignment explanation
Indices: 14868108--14868157 Score: 52
Period size: 9 Copynumber: 5.8 Consensus size: 9
14868098 GTATTTAGTA
14868108 ATTTTTTAT
1 ATTTTTTAT
14868117 ATTTTATT-T
1 ATTTT-TTAT
14868126 ATTTTTTA-
1 ATTTTTTAT
14868134 ATTTTTT-T
1 ATTTTTTAT
* *
14868142 AATTTTTAG
1 ATTTTTTAT
14868151 ATTTTTT
1 ATTTTTT
14868158 TGAAATTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
8 15 0.44
9 17 0.50
10 2 0.06
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (9 bp):
ATTTTTTAT
Found at i:14868130 original size:17 final size:17
Alignment explanation
Indices: 14868110--14868168 Score: 66
Period size: 17 Copynumber: 3.4 Consensus size: 17
14868100 ATTTAGTAAT
*
14868110 TTTTTATATTTTATTTAT
1 TTTTTATATTTT-TTTAA
14868128 TTTTTA-ATTTTTTTAA
1 TTTTTATATTTTTTTAA
*
14868144 TTTTTAGATTTTTTTGAAA
1 TTTTTATATTTTTTT--AA
14868163 TTTTTA
1 TTTTTA
14868169 AATAATTTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
16 10 0.27
17 13 0.35
18 6 0.16
19 8 0.22
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (17 bp):
TTTTTATATTTTTTTAA
Found at i:14868142 original size:16 final size:17
Alignment explanation
Indices: 14868108--14868158 Score: 68
Period size: 17 Copynumber: 3.0 Consensus size: 17
14868098 GTATTTAGTA
*
14868108 ATTTTTTATATTTTATTT
1 ATTTTTTAGATTTT-TTT
14868126 ATTTTTTA-ATTTTTTT
1 ATTTTTTAGATTTTTTT
*
14868142 AATTTTTAGATTTTTTT
1 ATTTTTTAGATTTTTTT
14868159 GAAATTTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
16 10 0.32
17 13 0.42
18 8 0.26
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (17 bp):
ATTTTTTAGATTTTTTT
Found at i:14869150 original size:25 final size:25
Alignment explanation
Indices: 14869122--14869174 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 25
14869112 ATTTTTGAAT
*
14869122 TTGATAATGATTTTGTG-TTTTGTTA
1 TTGATAAT-AGTTTGTGATTTTGTTA
*
14869147 TTGATGATAGTTTGTGATTTTTGTTA
1 TTGATAATAGTTTGTGA-TTTTGTTA
14869173 TT
1 TT
14869175 TGTGGTTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 7 0.29
25 7 0.29
26 10 0.42
ACGTcount: A:0.19, C:0.00, G:0.21, T:0.60
Consensus pattern (25 bp):
TTGATAATAGTTTGTGATTTTGTTA
Found at i:14869763 original size:2 final size:2
Alignment explanation
Indices: 14869751--14869784 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
14869741 TTAGATACAA
*
14869751 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14869785 TATGCTCGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:14870304 original size:41 final size:41
Alignment explanation
Indices: 14870259--14870445 Score: 293
Period size: 41 Copynumber: 4.6 Consensus size: 41
14870249 GGTTTTAAAA
*
14870259 CCTAGCAGGCTAAGTGCCGGTGAACTAAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGCTATAAG
* *
14870300 CCTAGCAGGCTAAGTGCCGGTGATTTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGCTATAAG
*
14870341 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGCTATAAG
* *
14870382 CCTAGCAGGCTAAGTGTCGGTGATCTAAATCAGGCTTTAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGCTATAAG
* * *
14870423 CCTAACAAGCTAAGTGCCAGTGA
1 CCTAGCAGGCTAAGTGCCGGTGA
14870446 ATCTGTTTAA
Statistics
Matches: 135, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 135 1.00
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.22
Consensus pattern (41 bp):
CCTAGCAGGCTAAGTGCCGGTGATCTAAATCAGGCTATAAG
Found at i:14872657 original size:30 final size:30
Alignment explanation
Indices: 14872591--14872658 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
14872581 AAATAAATAA
* *
14872591 ATAACTTTAAATGGTTTAGTGACTTAAATG
1 ATAACTTTAAATGGTTTAGTAACTCAAATG
* *
14872621 AAAACTTTCAAATGGTTTAGTAAC-CAAATT
1 ATAACTTT-AAATGGTTTAGTAACTCAAATG
14872651 ATAACTTT
1 ATAACTTT
14872659 TTTAGTTAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
30 18 0.56
31 14 0.44
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (30 bp):
ATAACTTTAAATGGTTTAGTAACTCAAATG
Found at i:14877037 original size:3 final size:3
Alignment explanation
Indices: 14877029--14877054 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
14877019 ACCTAGGAAA
14877029 AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AA
14877055 AGAGTTAGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:14877721 original size:30 final size:30
Alignment explanation
Indices: 14877670--14877726 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
14877660 GAGAAGGAAG
*
14877670 AAATAATAATGTGTTTCTTTTTCTTTTGGT
1 AAATAATAATGTGTTTCTTTTTATTTTGGT
14877700 AAAT-ATAATGTGTTTCTTTTTTATTTT
1 AAATAATAATGTGTTTC-TTTTTATTTT
14877727 TACTTATATG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 12 0.48
30 13 0.52
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.60
Consensus pattern (30 bp):
AAATAATAATGTGTTTCTTTTTATTTTGGT
Found at i:14885976 original size:22 final size:22
Alignment explanation
Indices: 14885951--14885993 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
14885941 CAATTTCAAG
14885951 TTTAAATT-TGTACTAACTATTC
1 TTTAAATTATGT-CTAACTATTC
**
14885973 TTTATTTTATGTCTAACTATT
1 TTTAAATTATGTCTAACTATT
14885994 GTAATACATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.28, C:0.12, G:0.05, T:0.56
Consensus pattern (22 bp):
TTTAAATTATGTCTAACTATTC
Found at i:14887525 original size:20 final size:19
Alignment explanation
Indices: 14887499--14887548 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
14887489 CATCGAAGAG
14887499 AAATTAGGGCAACAAAAGT
1 AAATTAGGGCAACAAAAGT
* *
14887518 GCAATTAGGAGC-ATAAAAGT
1 -AAATTAGG-GCAACAAAAGT
14887538 AAATTAGGGCA
1 AAATTAGGGCA
14887549 CCGTAGTGCA
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
18 2 0.08
19 7 0.28
20 14 0.56
21 2 0.08
ACGTcount: A:0.48, C:0.10, G:0.24, T:0.18
Consensus pattern (19 bp):
AAATTAGGGCAACAAAAGT
Found at i:14887648 original size:40 final size:40
Alignment explanation
Indices: 14887604--14887682 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 40
14887594 GTACTAACAG
* *
14887604 GAGTATGAAAGTACTATTAGAAGCACTATAGTGCTATCAA
1 GAGTACGAAAGTACTATTAGAAGCACCATAGTGCTATCAA
* *
14887644 GAGTACGAAAGTACTGTTAGGAGCACCATAGTGCTATCA
1 GAGTACGAAAGTACTATTAGAAGCACCATAGTGCTATCA
14887683 GGAGCACTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.25
Consensus pattern (40 bp):
GAGTACGAAAGTACTATTAGAAGCACCATAGTGCTATCAA
Found at i:14887687 original size:20 final size:20
Alignment explanation
Indices: 14887625--14887689 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
14887615 TACTATTAGA
* *
14887625 AGCACTATAGTGCTATCAAG
1 AGCACCATAGTGCTATCAGG
* * * * * *
14887645 AGTACGAAAGTACTGTTAGG
1 AGCACCATAGTGCTATCAGG
14887665 AGCACCATAGTGCTATCAGG
1 AGCACCATAGTGCTATCAGG
14887685 AGCAC
1 AGCAC
14887690 TTATTCAAGA
Statistics
Matches: 32, Mismatches: 13, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.22
Consensus pattern (20 bp):
AGCACCATAGTGCTATCAGG
Found at i:14890239 original size:68 final size:68
Alignment explanation
Indices: 14890131--14890264 Score: 171
Period size: 68 Copynumber: 2.0 Consensus size: 68
14890121 TGATTAAACT
* ** * * *
14890131 TAATCACTTTAATATAAGTTAATATGATACTTATCCAGATAAATATTTAATTTAATTTAATTTTA
1 TAATCACTTTAATATAAATTAATAAAATACTTATCAAGATAAATATTAAATTTAATTTAATATTA
14890196 AGA
66 AGA
* * *
14890199 TAATCACTTTAATTTTAAATTAATAAAATA-TTATTAAGATAAGTATTAAATTTAATTTAATATT
1 TAATCACTTTAA-TATAAATTAATAAAATACTTATCAAGATAAATATTAAATTTAATTTAATATT
14890263 AA
65 AA
14890265 TATTATTAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
68 43 0.77
69 13 0.23
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.45
Consensus pattern (68 bp):
TAATCACTTTAATATAAATTAATAAAATACTTATCAAGATAAATATTAAATTTAATTTAATATTA
AGA
Found at i:14890689 original size:17 final size:17
Alignment explanation
Indices: 14890667--14890705 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
14890657 AAGATTTTTC
14890667 AAATTAATTTTTAAAGA
1 AAATTAATTTTTAAAGA
14890684 AAATTAATTTTTAAAGA
1 AAATTAATTTTTAAAGA
14890701 AAATT
1 AAATT
14890706 CTTTAATCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (17 bp):
AAATTAATTTTTAAAGA
Found at i:14892285 original size:26 final size:26
Alignment explanation
Indices: 14892249--14892300 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
14892239 AGCACCCATC
14892249 CAACCCTACACACCAATTAGTGTCGG
1 CAACCCTACACACCAATTAGTGTCGG
14892275 CAACCCTACACACCAATTAGTGTCGG
1 CAACCCTACACACCAATTAGTGTCGG
14892301 TATGACACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.35, G:0.15, T:0.19
Consensus pattern (26 bp):
CAACCCTACACACCAATTAGTGTCGG
Found at i:14892925 original size:62 final size:63
Alignment explanation
Indices: 14892787--14892927 Score: 162
Period size: 63 Copynumber: 2.3 Consensus size: 63
14892777 ATAACCCCTC
* * * * *
14892787 ACACGGCCTGGACACACGCCTGTGTCCCTGACCCATGTGACCCTAAATACCAAATAGTAAGTT
1 ACACGGCTTGGACACAAGCCCGTGTCCCTGACCCATGTGACCCTAAATACCAAACAATAAGTT
** * *
14892850 ACACACCTTGGACATAAGCCCGTGTCCCT-AGCCCATGTGA-CCTAAAGTA-CAAACAATGAGTT
1 ACACGGCTTGGACACAAGCCCGTGTCCCTGA-CCCATGTGACCCTAAA-TACCAAACAATAAGTT
14892912 ACACGGCTTGGACACA
1 ACACGGCTTGGACACA
14892928 CGTTTGTGTC
Statistics
Matches: 64, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
62 30 0.47
63 34 0.53
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.20
Consensus pattern (63 bp):
ACACGGCTTGGACACAAGCCCGTGTCCCTGACCCATGTGACCCTAAATACCAAACAATAAGTT
Found at i:14892937 original size:62 final size:63
Alignment explanation
Indices: 14892787--14892950 Score: 181
Period size: 62 Copynumber: 2.6 Consensus size: 63
14892777 ATAACCCCTC
* * *
14892787 ACACGGCCTGGACACACGCCTGTGTCCCT-GACCCATGTGACCCTAAATACCAAATAGTAAGTT
1 ACACGGCTTGGACACACGCCTGTGTCCCTAG-CCCATGTGACCCTAAATACCAAACAATAAGTT
** * * * *
14892850 ACACACCTTGGACATAAGCCCGTGTCCCTAGCCCATGTGA-CCTAAAGTA-CAAACAATGAGTT
1 ACACGGCTTGGACACACGCCTGTGTCCCTAGCCCATGTGACCCTAAA-TACCAAACAATAAGTT
** *
14892912 ACACGGCTTGGACACACGTTTGTGTCCCTAGCCCGTGTG
1 ACACGGCTTGGACACACGCCTGTGTCCCTAGCCCATGTG
14892951 CCTCTAATTC
Statistics
Matches: 82, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
62 47 0.57
63 34 0.41
64 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (63 bp):
ACACGGCTTGGACACACGCCTGTGTCCCTAGCCCATGTGACCCTAAATACCAAACAATAAGTT
Found at i:14904359 original size:16 final size:17
Alignment explanation
Indices: 14904340--14904373 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
14904330 TGTTATTCAG
*
14904340 AATTT-AAATTATTTTA
1 AATTTCAAACTATTTTA
14904356 AATTTCAAACTATTTTA
1 AATTTCAAACTATTTTA
14904373 A
1 A
14904374 TTGAGTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
AATTTCAAACTATTTTA
Found at i:14907123 original size:15 final size:14
Alignment explanation
Indices: 14907105--14907138 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
14907095 CTGTTATTAT
*
14907105 TTTATTTTATATTTG
1 TTTATTTTAT-TTTA
14907120 TTTATTTTATTTTA
1 TTTATTTTATTTTA
14907134 TTTAT
1 TTTAT
14907139 CAACTAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:14907894 original size:19 final size:19
Alignment explanation
Indices: 14907867--14907903 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14907857 TAAAAATAAA
14907867 TTAACTTATATAAATATGG
1 TTAACTTATATAAATATGG
* *
14907886 TTAATTTATGTAAATATG
1 TTAACTTATATAAATATG
14907904 TTGCAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.11, T:0.46
Consensus pattern (19 bp):
TTAACTTATATAAATATGG
Found at i:14915245 original size:102 final size:101
Alignment explanation
Indices: 14915069--14915412 Score: 458
Period size: 102 Copynumber: 3.4 Consensus size: 101
14915059 TATCGATGAA
* * *
14915069 CACGTGTGTAATACTCTGTGAAGGCTATTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
*
14915134 TAAGTGAAGGCTACAATGTGTATCGAGAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTGTATCGA-AAGCTTTGGT
*
14915171 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
* *
14915236 TAAGTGAAGGCTACTATGTGTACCAAAAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTGTATC-GAAAGCTTTGGT
* *** * *
14915273 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGATCACGTGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
* * * * *
14915337 TATGTGAAGGCTACTACGTGAATCGTAAAAC-TTGAT
66 TAAGTGAAGGCTACTATGTGTATCG-AAAGCTTTGGT
* * *
14915373 CACATGTGTAGTACTATGTGAAGGCTACTACATGTATCGA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGA
14915413 ATGATAAAAG
Statistics
Matches: 215, Mismatches: 24, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
100 39 0.18
101 44 0.20
102 131 0.61
103 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (101 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGTGTATCGAAAGCTTTGGT
Found at i:14915339 original size:50 final size:50
Alignment explanation
Indices: 14915069--14915403 Score: 368
Period size: 51 Copynumber: 6.6 Consensus size: 50
14915059 TATCGATGAA
* * * ***
14915069 CACGTGTGTAATACTCTGTGAAGGCTATTACGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCG-TAAAACTTGGT
* * * * * *
14915120 CACATGTGTAGTACTAAGTGAAGGCTACAATGTGTATCG-AGAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGTA-AAAC-TTGGT
* ***
14915171 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCG-TAAAACTTGGT
* * * * **
14915222 CACATGTGTAGTACTAAGTGAAGGCTACTATGTGTA-CCAAAAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGTAAAA-C-TTGGT
* *
14915273 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGTAAAACTTGGT
*
14915323 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGTAAAACTTGGT
*
14915373 CACATGTGTAGTACTATGTGAAGGCTACTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTAC
14915404 ATGTATCGAA
Statistics
Matches: 238, Mismatches: 39, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
49 4 0.02
50 86 0.36
51 140 0.59
52 7 0.03
53 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGTAAAACTTGGT
Found at i:14915673 original size:37 final size:38
Alignment explanation
Indices: 14915604--14915676 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 38
14915594 ATGTATGGAA
* **
14915604 TTGAATTGAATATTAACTTGAAAATGGCAAAGTGAATT
1 TTGAATTGAATAGTAACTTGAAAATGAAAAAGTGAATT
* *
14915642 TTGAATTGAATAGTGA-TTGAAAGTGAAAAAGTGAA
1 TTGAATTGAATAGTAACTTGAAAATGAAAAAGTGAA
14915677 ATTATGAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
37 16 0.53
38 14 0.47
ACGTcount: A:0.44, C:0.03, G:0.22, T:0.32
Consensus pattern (38 bp):
TTGAATTGAATAGTAACTTGAAAATGAAAAAGTGAATT
Found at i:14923672 original size:63 final size:63
Alignment explanation
Indices: 14923594--14923775 Score: 211
Period size: 63 Copynumber: 2.9 Consensus size: 63
14923584 CTAGAGAAGG
* * * * * * * ***
14923594 TGTCAGTGCAGTGAATGATTTTGCATGCTGCGGTGCTTATGTAAAATAAAGTGGTGATGATTG
1 TGTCGGTGCAATGAATGATTGTGCATGTTGTGGTGCTTGTGTAAAATAAATTGGTGATGAACA
* * *
14923657 TGTTGGTGCAATGAATAATTGTGCGTGTTGTGGTGCTTGTGTAAAATAAATTGGTGATGAACA
1 TGTCGGTGCAATGAATGATTGTGCATGTTGTGGTGCTTGTGTAAAATAAATTGGTGATGAACA
* * * *
14923720 TGTCGGTGCAATAAATGATTGTGCTTGTTGTAGTGCTTGTGGAAAATAAATTGGTG
1 TGTCGGTGCAATGAATGATTGTGCATGTTGTGGTGCTTGTGTAAAATAAATTGGTG
14923776 TTGTATGTGT
Statistics
Matches: 100, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
63 100 1.00
ACGTcount: A:0.26, C:0.08, G:0.30, T:0.36
Consensus pattern (63 bp):
TGTCGGTGCAATGAATGATTGTGCATGTTGTGGTGCTTGTGTAAAATAAATTGGTGATGAACA
Found at i:14923800 original size:63 final size:63
Alignment explanation
Indices: 14923626--14923867 Score: 211
Period size: 63 Copynumber: 3.9 Consensus size: 63
14923616 GCATGCTGCG
* * * * * * * *
14923626 GTGCTTATGTAAAATAAAGTGGTGATG-ATTGTGTTGGTGCAATGAATAATTGTGCGTGTTGTG
1 GTGCTTGTGGAAAATAAATTGGTGTTGTA-TGTGTTGATGCAAGGAATGATTGTGCGTGTTGTA
* * * ** * * ** *
14923689 GTGCTTGTGTAAAATAAATTGGTGATGAACATGTCGGTGCAATAAATGATTGTGCTTGTTGTA
1 GTGCTTGTGGAAAATAAATTGGTGTTGTATGTGTTGATGCAAGGAATGATTGTGCGTGTTGTA
* * *
14923752 GTGCTTGTGGAAAATAAATTGGTGTTGTATGTGTTGATGTAGGGAATGATTGTGCGTGCTG-A
1 GTGCTTGTGGAAAATAAATTGGTGTTGTATGTGTTGATGCAAGGAATGATTGTGCGTGTTGTA
* * * * *
14923814 GGTACATGTGGAAAATAAACTGTTGTTGTATGTATTGATGCAAGGAA-GATTGTG
1 -GTGCTTGTGGAAAATAAATTGGTGTTGTATGTGTTGATGCAAGGAATGATTGTG
14923868 TGTGCTAAGG
Statistics
Matches: 148, Mismatches: 29, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
62 8 0.05
63 139 0.94
64 1 0.01
ACGTcount: A:0.27, C:0.06, G:0.31, T:0.36
Consensus pattern (63 bp):
GTGCTTGTGGAAAATAAATTGGTGTTGTATGTGTTGATGCAAGGAATGATTGTGCGTGTTGTA
Found at i:14923895 original size:62 final size:63
Alignment explanation
Indices: 14923752--14923895 Score: 182
Period size: 63 Copynumber: 2.3 Consensus size: 63
14923742 GCTTGTTGTA
* * * * * *
14923752 GTGCTTGTGGAAAATAAATTGGTGTTGTATGTGTTGATGTAGGGAATGATTGTGCGTGCTGAG
1 GTGCATGTGGAAAATAAACTGGTGTTGTATGTATTGATGCAAGGAATGATTGTGCGTGCTAAG
* * *
14923815 GTACATGTGGAAAATAAACTGTTGTTGTATGTATTGATGCAAGGAA-GATTGTGTGTGCTAAG
1 GTGCATGTGGAAAATAAACTGGTGTTGTATGTATTGATGCAAGGAATGATTGTGCGTGCTAAG
* *
14923877 GTGCGTGTGAAAAATAAAC
1 GTGCATGTGGAAAATAAAC
14923896 CAGAGTTGAA
Statistics
Matches: 69, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
62 30 0.43
63 39 0.57
ACGTcount: A:0.28, C:0.06, G:0.32, T:0.33
Consensus pattern (63 bp):
GTGCATGTGGAAAATAAACTGGTGTTGTATGTATTGATGCAAGGAATGATTGTGCGTGCTAAG
Found at i:14925299 original size:9 final size:9
Alignment explanation
Indices: 14925285--14925315 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
14925275 GTTAAATGAA
14925285 TCGAGTTAT
1 TCGAGTTAT
14925294 TCGAGTTAT
1 TCGAGTTAT
14925303 TCGAGTTAT
1 TCGAGTTAT
14925312 TCGA
1 TCGA
14925316 ATCAACTCGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.23, T:0.42
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:14925386 original size:9 final size:9
Alignment explanation
Indices: 14925372--14925405 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
14925362 GTTTTTGAAT
14925372 TCGAATAAC
1 TCGAATAAC
14925381 TCGAATAAC
1 TCGAATAAC
*
14925390 TCGAATAAT
1 TCGAATAAC
14925399 TCGAATA
1 TCGAATA
14925406 TCAAACTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.44, C:0.18, G:0.12, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:14926324 original size:5 final size:5
Alignment explanation
Indices: 14926314--14926339 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
14926304 GAACAAATAT
14926314 ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG A
14926340 ATTCCATCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATTCG
Found at i:14926945 original size:14 final size:14
Alignment explanation
Indices: 14926923--14927016 Score: 71
Period size: 14 Copynumber: 6.7 Consensus size: 14
14926913 AAAAATTGGG
*
14926923 AATTTAGAATAAAA
1 AATTGAGAATAAAA
** *
14926937 AATTGAGAATTGAC
1 AATTGAGAATAAAA
*
14926951 GATTGAGAATAAAA
1 AATTGAGAATAAAA
* * **
14926965 AATCGAGAACAAGC
1 AATTGAGAATAAAA
14926979 AATTGAGAATAAAA
1 AATTGAGAATAAAA
* ** *
14926993 AATCGAGAGCAAGA
1 AATTGAGAATAAAA
14927007 AATTGAGAAT
1 AATTGAGAAT
14927017 CAAATTGTGA
Statistics
Matches: 56, Mismatches: 24, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
14 56 1.00
ACGTcount: A:0.54, C:0.06, G:0.19, T:0.20
Consensus pattern (14 bp):
AATTGAGAATAAAA
Found at i:14926947 original size:28 final size:28
Alignment explanation
Indices: 14926916--14927000 Score: 91
Period size: 28 Copynumber: 3.0 Consensus size: 28
14926906 AATTTAAAAA
* *
14926916 AATTGGGAATTTAGAATAAAAAATTGAG
1 AATTGGGAATTGAGAATAAAAAATCGAG
*
14926944 AATTGACG-ATTGAGAATAAAAAATCGAG
1 AATTG-GGAATTGAGAATAAAAAATCGAG
*** *
14926972 AACAAGCAATTGAGAATAAAAAATCGAG
1 AATTGGGAATTGAGAATAAAAAATCGAG
14927000 A
1 A
14927001 GCAAGAAATT
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
28 46 0.98
29 1 0.02
ACGTcount: A:0.53, C:0.06, G:0.20, T:0.21
Consensus pattern (28 bp):
AATTGGGAATTGAGAATAAAAAATCGAG
Found at i:14927005 original size:28 final size:28
Alignment explanation
Indices: 14926952--14927016 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
14926942 AGAATTGACG
*
14926952 ATTGAGAATAAAAAATCGAGAACAAGCA
1 ATTGAGAATAAAAAATCGAGAACAAGAA
*
14926980 ATTGAGAATAAAAAATCGAGAGCAAGAA
1 ATTGAGAATAAAAAATCGAGAACAAGAA
14927008 ATTGAGAAT
1 ATTGAGAAT
14927017 CAAATTGTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.55, C:0.08, G:0.20, T:0.17
Consensus pattern (28 bp):
ATTGAGAATAAAAAATCGAGAACAAGAA
Found at i:14930462 original size:6 final size:6
Alignment explanation
Indices: 14930447--14930477 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
14930437 TGCATTTGTG
14930447 AAAATAA AAAATA AAAATA AAAATA AAAATA
1 AAAAT-A AAAATA AAAATA AAAATA AAAATA
14930478 TACATATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.79
7 5 0.21
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:14930814 original size:3 final size:3
Alignment explanation
Indices: 14930806--14930845 Score: 55
Period size: 3 Copynumber: 13.3 Consensus size: 3
14930796 ATATGTAGGT
*
14930806 ATA ATA ATA ATA TATA AT- ATA ATA ATA AAA ATA ATA ATA A
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA A
14930846 CAAAATTGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 28 0.85
4 3 0.09
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14930850 original size:15 final size:15
Alignment explanation
Indices: 14930806--14930850 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
14930796 ATATGTAGGT
*
14930806 ATAATAATAATATATA
1 ATAATAATAATA-AAA
14930822 AT-ATAATAATAAAA
1 ATAATAATAATAAAA
*
14930836 ATAATAATAACAAAA
1 ATAATAATAATAAAA
14930851 TTGATAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
14 4 0.15
15 20 0.77
16 2 0.08
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (15 bp):
ATAATAATAATAAAA
Found at i:14931321 original size:21 final size:21
Alignment explanation
Indices: 14931287--14931338 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
14931277 CATATCTTCT
14931287 AAGATTGC--ATATCATATCC
1 AAGATTGCATATATCATATCC
*
14931306 AAGATTGCATATATCATATCT
1 AAGATTGCATATATCATATCC
14931327 AAGATTGCATAT
1 AAGATTGCATAT
14931339 CCTCGAAGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 8 0.27
21 22 0.73
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (21 bp):
AAGATTGCATATATCATATCC
Found at i:14931895 original size:44 final size:44
Alignment explanation
Indices: 14931771--14931895 Score: 189
Period size: 44 Copynumber: 2.8 Consensus size: 44
14931761 ATCAGATGCG
* * * *
14931771 ATCTTCAATCTATTCCACTGCTG-CCTAGGAAGATAGAATTCTCA
1 ATCTTCAACCTATTCCACTGCTGACC-AGGGAGATAGGATTCACA
14931815 ATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACA
1 ATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACA
*
14931859 ATCTTTAACCTATTCCACTGCTGACCAGGGAGATAGG
1 ATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGG
14931896 GCTGGGGTCA
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
44 73 0.97
45 2 0.03
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.28
Consensus pattern (44 bp):
ATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACA
Found at i:14932100 original size:88 final size:88
Alignment explanation
Indices: 14931895--14932484 Score: 792
Period size: 88 Copynumber: 6.7 Consensus size: 88
14931885 AGGGAGATAG
* * * *
14931895 GGCTGGGGTCATCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTTAACCAG
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTA-TTTTTAGCCTG
* * *
14931960 CTCCACTACAACCCAGGGAGGCAA
65 CTTCGCTGCAACCCAGGGAGGCAA
* * *
14931984 GGCTGGTGTCTTCGATCTGCTTTGCTGTCGGTGCAGGAAGGTAAGATTTGCTATTTTTAGCCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGC
*
14932049 TTCGCTGTAACCCAGGGAGGCAA
66 TTCGCTGCAACCCAGGGAGGCAA
* * *
14932072 GGCTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAGGAATGCAAGATTTGCTATTTTTTTAGCCT
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTA--TTTTTAGCCT
* *
14932137 -ATTCCACTGCAACCCAGGG-GGCAA
64 GCTT-CGCTGCAACCCAGGGAGGCAA
* * * * *
14932161 GACAGGTGTCTTCGATTTGTTTCGCTGTCGGTGCAGGAAGGCAAGATCTACTATTTTTAGCCTG-
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGC
* *
14932225 TTCAGTTACAACCCAGGGAGGCAA
66 TTC-GCTGCAACCCAGGGAGGCAA
* * * * *
14932249 GGCTGGTGTCTTCAATCTGCTTCGCTGTTGGTGCAGGAAGGCAAGATTTACTATTTTTAGCCTAC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGC
14932314 TTCGCTGCAACCCAGGGAGGCAA
66 TTCGCTGCAACCCAGGGAGGCAA
* *
14932337 GGCTGGTGTCTTCGATCTGCTTTGCTGTCGGTGCAGGAAGGTAAGATCTGCTATTTTTTAGCCTG
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTA-TTTTTAGCCTG
*
14932402 C-TCTGCTGCAACCCAGGGAGGCAC
65 CTTC-GCTGCAACCCAGGGAGGCAA
* *
14932426 GGCTGGTGTCCTCGATCTGCTTCGCTGTCGGTGCAGGAAGGAAAGATCTGCTATTTTTA
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTA
14932485 CCGATCTGCT
Statistics
Matches: 442, Mismatches: 50, Indels: 19
0.86 0.10 0.04
Matches are distributed among these distances:
86 1 0.00
87 23 0.05
88 212 0.48
89 183 0.41
90 23 0.05
ACGTcount: A:0.19, C:0.23, G:0.28, T:0.30
Consensus pattern (88 bp):
GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGC
TTCGCTGCAACCCAGGGAGGCAA
Found at i:14932190 original size:177 final size:179
Alignment explanation
Indices: 14931895--14932483 Score: 847
Period size: 177 Copynumber: 3.3 Consensus size: 179
14931885 AGGGAGATAG
* * *
14931895 GGCTGGGGTCATCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTTAACC-A
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTTAGCCTA
*
14931959 GC-TCCACTACAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTTGCTGTCGGTGCAGGAA
66 -CTTCCACTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTTGCTGTCGGTGCAGGAA
* *
14932023 GGTAAGATTTGCTATTTTTAGCCTGCTTC-GCTGTAACCCAGGGAGGCAA
130 GGTAAGATCTGCTATTTTTAGCCTGCTTCAGCTGCAACCCAGGGAGGCAA
* * *
14932072 GGCTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAGGAATGCAAGATTTGCTATTTTTTTAGCCT
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTA-TTTTTTAGCCT
* * *
14932137 A-TTCCACTGCAACCCAGGG-GGCAAGACAGGTGTCTTCGATTTG-TTTCGCTGTCGGTGCAGGA
65 ACTTCCACTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTT-GCTGTCGGTGCAGGA
* * * *
14932199 AGGCAAGATCTACTATTTTTAGCCTG-TTCAGTTACAACCCAGGGAGGCAA
129 AGGTAAGATCTGCTATTTTTAGCCTGCTTCAGCTGCAACCCAGGGAGGCAA
* * * *
14932249 GGCTGGTGTCTTCAATCTGCTTCGCTGTTGGTGCAGGAAGGCAAGATTTACTA-TTTTTAGCCTA
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTTAGCCTA
*
14932313 CTT-CGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTTGCTGTCGGTGCAGGAAG
66 CTTCCACTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTTGCTGTCGGTGCAGGAAG
* *
14932377 GTAAGATCTGCTATTTTTTAGCCTGC-TCTGCTGCAACCCAGGGAGGCAC
131 GTAAGATCTGCTA-TTTTTAGCCTGCTTCAGCTGCAACCCAGGGAGGCAA
* *
14932426 GGCTGGTGTCCTCGATCTGCTTCGCTGTCGGTGCAGGAAGGAAAGATCTGCTATTTTT
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTT
14932484 ACCGATCTGC
Statistics
Matches: 364, Mismatches: 37, Indels: 21
0.86 0.09 0.05
Matches are distributed among these distances:
175 25 0.07
176 57 0.16
177 252 0.69
178 29 0.08
179 1 0.00
ACGTcount: A:0.19, C:0.23, G:0.29, T:0.30
Consensus pattern (179 bp):
GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTTAGCCTA
CTTCCACTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTTGCTGTCGGTGCAGGAAG
GTAAGATCTGCTATTTTTAGCCTGCTTCAGCTGCAACCCAGGGAGGCAA
Done.