Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 ID=Chr13-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58321163
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 747533 characters in sequence are not A, C, G, or T
File 51 of 199
Found at i:14932391 original size:265 final size:265
Alignment explanation
Indices: 14931906--14932484 Score: 865
Period size: 265 Copynumber: 2.2 Consensus size: 265
14931896 GCTGGGGTCA
14931906 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTTAACCAGCTCCACTACAA
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTA-TTTTTAACCAGCTCCACTACAA
* * * *
14931971 CCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTTGCTGTCGGTGCAGGAAGGTAAGATTTGCT
65 CCCAGGGAGGCAAGGCTGGTGTCTTCAATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATTTACT
* *
14932036 ATTTTTAGCCTGCTTCGCTGTAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTC
130 ATTTTTAGCCTACTTCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTC
* * *
14932101 GGTGCAGGAATGCAAGATTTGCTATTTTTTTAGCCTATTCCACTGCAACCCAGGG-GGCAAGACA
195 GGTGCAGGAAGGCAAGATCTGCTA-TTTTTTAGCCTACTCCACTGCAACCCAGGGAGGCAAGACA
*
14932165 GGTGTCT
259 GGTGTCC
* * * * * * *
14932172 TCGATTTGTTTCGCTGTCGGTGCAGGAAGGCAAGATCTACTATTTTTAGCCTG-TTCAGTTACAA
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCAGCTCCA-CTACAA
*
14932236 CCCAGGGAGGCAAGGCTGGTGTCTTCAATCTGCTTCGCTGTTGGTGCAGGAAGGCAAGATTTACT
65 CCCAGGGAGGCAAGGCTGGTGTCTTCAATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATTTACT
**
14932301 ATTTTTAGCCTACTTCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTTGCTGTC
130 ATTTTTAGCCTACTTCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTC
* * ** * * *
14932366 GGTGCAGGAAGGTAAGATCTGCTATTTTTTAGCCTGCTCTGCTGCAACCCAGGGAGGCACGGCTG
195 GGTGCAGGAAGGCAAGATCTGCTATTTTTTAGCCTACTCCACTGCAACCCAGGGAGGCAAGACAG
14932431 GTGTCC
260 GTGTCC
*
14932437 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGAAAGATCTGCTATTTTTA
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTA
14932485 CCGATCTGCT
Statistics
Matches: 280, Mismatches: 31, Indels: 5
0.89 0.10 0.02
Matches are distributed among these distances:
264 29 0.10
265 212 0.76
266 39 0.14
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.30
Consensus pattern (265 bp):
TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCAGCTCCACTACAAC
CCAGGGAGGCAAGGCTGGTGTCTTCAATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATTTACTA
TTTTTAGCCTACTTCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCG
GTGCAGGAAGGCAAGATCTGCTATTTTTTAGCCTACTCCACTGCAACCCAGGGAGGCAAGACAGG
TGTCC
Found at i:14933736 original size:27 final size:27
Alignment explanation
Indices: 14933706--14933762 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
14933696 AATTTTCACC
14933706 TTGGCCTCTCCTTTTCTTTTTT-TTTTT
1 TTGGCCTCTCC-TTTCTTTTTTATTTTT
** * *
14933733 TTGGTTTTTTCTTTCTTTTTTATTTTT
1 TTGGCCTCTCCTTTCTTTTTTATTTTT
14933760 TTG
1 TTG
14933763 AAATATTTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 10 0.40
27 15 0.60
ACGTcount: A:0.02, C:0.14, G:0.09, T:0.75
Consensus pattern (27 bp):
TTGGCCTCTCCTTTCTTTTTTATTTTT
Found at i:14939542 original size:3 final size:3
Alignment explanation
Indices: 14939534--14939582 Score: 73
Period size: 3 Copynumber: 16.3 Consensus size: 3
14939524 ATATGTAGGT
*
14939534 ATA ATA ATA ATA ATA ATA ATA TATA AT- ATA ATA ATA AAA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
14939579 ATA A
1 ATA A
14939583 CAAAATTGAT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
2 2 0.05
3 37 0.88
4 3 0.07
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14940023 original size:22 final size:22
Alignment explanation
Indices: 14939998--14940075 Score: 76
Period size: 21 Copynumber: 3.7 Consensus size: 22
14939988 TACAAATTAA
*
14939998 ATCTCTAAGATTACAAAATCAT
1 ATCTCTAAGATTGCAAAATCAT
*
14940020 ATCTTCTAAGGTTGC-AAATCAT
1 ATC-TCTAAGATTGCAAAATCAT
*
14940042 ATC-C-AAGATTGCATATATCAT
1 ATCTCTAAGATTGCA-AAATCAT
14940063 AT-T-TAAGATTGCA
1 ATCTCTAAGATTGCA
14940076 TATCCTCGAA
Statistics
Matches: 47, Mismatches: 4, Indels: 11
0.76 0.06 0.18
Matches are distributed among these distances:
19 7 0.15
20 1 0.02
21 17 0.36
22 13 0.28
23 9 0.19
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (22 bp):
ATCTCTAAGATTGCAAAATCAT
Found at i:14940037 original size:23 final size:22
Alignment explanation
Indices: 14939988--14940044 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
14939978 AAAGGGTATC
* *
14939988 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
*
14940009 TACAAAATCATATCTTCTAAGGT
1 TAC-AAATCATATCTTCTAAGAT
*
14940032 TGCAAATCATATC
1 TACAAATCATATC
14940045 CAAGATTGCA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.60
23 9 0.30
ACGTcount: A:0.42, C:0.18, G:0.07, T:0.33
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:14943153 original size:29 final size:29
Alignment explanation
Indices: 14943094--14943153 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
14943084 TATGGTTTAA
*
14943094 TGTGCAATTGTATACATAAACTTTGATTT
1 TGTGCAATTGTATACATAAACTTTGAGTT
* * *
14943123 TGTGTAATTTTATACATGAAA-TTTTAGTT
1 TGTGCAATTGTATACAT-AAACTTTGAGTT
14943152 TG
1 TG
14943154 ATCCAATTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
29 23 0.88
30 3 0.12
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.48
Consensus pattern (29 bp):
TGTGCAATTGTATACATAAACTTTGAGTT
Found at i:14949676 original size:20 final size:20
Alignment explanation
Indices: 14949653--14949698 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
14949643 TGTTAATATT
*
14949653 TTGTTATTTATTCAAATAGG
1 TTGTTACTTATTCAAATAGG
*
14949673 TTGTTACTTATTTAAATAGG
1 TTGTTACTTATTCAAATAGG
14949693 TTGTTA
1 TTGTTA
14949699 AGCTTTACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.28, C:0.04, G:0.15, T:0.52
Consensus pattern (20 bp):
TTGTTACTTATTCAAATAGG
Found at i:14952438 original size:18 final size:18
Alignment explanation
Indices: 14952415--14952456 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
14952405 AGCCAACCTG
14952415 AACCCA-CATCCAACATGC
1 AACCCACCA-CCAACATGC
14952433 AACCCACCACCAACATGC
1 AACCCACCACCAACATGC
*
14952451 ATCCCA
1 AACCCA
14952457 TGATGACTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 20 0.91
19 2 0.09
ACGTcount: A:0.38, C:0.48, G:0.05, T:0.10
Consensus pattern (18 bp):
AACCCACCACCAACATGC
Found at i:14954168 original size:20 final size:20
Alignment explanation
Indices: 14954145--14954190 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
14954135 TGTTAATATT
* *
14954145 TTGTTATTTA-TTCAAATAGG
1 TTGTTACTTATTTC-AATAAG
14954165 TTGTTACTTATTTCAATAAG
1 TTGTTACTTATTTCAATAAG
14954185 TTGTTA
1 TTGTTA
14954191 AGCTTTACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 20 0.87
21 3 0.13
ACGTcount: A:0.28, C:0.07, G:0.13, T:0.52
Consensus pattern (20 bp):
TTGTTACTTATTTCAATAAG
Found at i:14957496 original size:8 final size:8
Alignment explanation
Indices: 14957483--14957545 Score: 51
Period size: 8 Copynumber: 7.6 Consensus size: 8
14957473 AAATACTTTA
14957483 TTAAATTT
1 TTAAATTT
14957491 TTAAA-TT
1 TTAAATTT
14957498 TTAAATTTT
1 TTAAA-TTT
14957507 TTAAAATACTT
1 TT-AAAT--TT
*
14957518 TTTAATTT
1 TTAAATTT
14957526 TTAAA--T
1 TTAAATTT
14957532 TTAAATATT
1 TTAAAT-TT
14957541 TTAAA
1 TTAAA
14957546 ATACTTTTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 15
0.73 0.03 0.24
Matches are distributed among these distances:
6 6 0.13
7 7 0.16
8 11 0.24
9 11 0.24
10 6 0.13
11 4 0.09
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (8 bp):
TTAAATTT
Found at i:14957543 original size:34 final size:34
Alignment explanation
Indices: 14957447--14957586 Score: 164
Period size: 35 Copynumber: 4.1 Consensus size: 34
14957437 TATTTTATTA
* *
14957447 TTTTT-ATTTTTTAATTTAAATACTTT-AAATAC
1 TTTTTAATTTTTAAATTTAAATATTTTAAAATAC
*
14957479 TTTATTAAATTTTTAAATTTTAAATTTTTTAAAATAC
1 TTT-TT-AATTTTTAAA-TTTAAATATTTTAAAATAC
14957516 TTTTTAATTTTTAAATTTAAATATTTTAAAATAC
1 TTTTTAATTTTTAAATTTAAATATTTTAAAATAC
* *
14957550 TTTTTTAATTTTT--ATTTTAAT-TTTTAAAATAA
1 -TTTTTAATTTTTAAATTTAAATATTTTAAAATAC
14957582 TTTTT
1 TTTTT
14957587 TGGTATTTAT
Statistics
Matches: 96, Mismatches: 6, Indels: 13
0.83 0.05 0.11
Matches are distributed among these distances:
31 5 0.05
32 13 0.14
33 9 0.09
34 18 0.19
35 30 0.31
36 12 0.12
37 9 0.09
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (34 bp):
TTTTTAATTTTTAAATTTAAATATTTTAAAATAC
Found at i:14957596 original size:32 final size:33
Alignment explanation
Indices: 14957497--14957601 Score: 106
Period size: 32 Copynumber: 3.2 Consensus size: 33
14957487 ATTTTTAAAT
* * *
14957497 TTTAAATTTTTTAAAAT-ACTTTTTAATTTTTAAA
1 TTTAAATATTTTAAAATAATTTTTTAATATTT--A
* *
14957531 TTTAAATATTTTAAAATACTTTTTTAATTTTTA
1 TTTAAATATTTTAAAATAATTTTTTAATATTTA
* **
14957564 TTTTAAT-TTTTAAAATAATTTTTTGGTATTTA
1 TTTAAATATTTTAAAATAATTTTTTAATATTTA
14957596 TTTAAA
1 TTTAAA
14957602 AAATGGGCCA
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
32 26 0.43
33 7 0.11
34 16 0.26
35 12 0.20
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (33 bp):
TTTAAATATTTTAAAATAATTTTTTAATATTTA
Found at i:14960353 original size:86 final size:85
Alignment explanation
Indices: 14960192--14960355 Score: 206
Period size: 86 Copynumber: 1.9 Consensus size: 85
14960182 AGCTCTTACA
* * * *
14960192 ATGCCAATGTCCCAAACGTGGTCTTACATGTAATCAAATATCAATGCCACTGTCCCAGACAGGGT
1 ATGCCAATGTCCCAAACATGGTCTTACACGTAATCAAATATCAACGCCAATGTCCCAGACAGGGT
14960257 CTTACACGAAATCGTATACG
66 CTTACACGAAATCGTATACG
* * * * *
14960277 ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCTCAA-ATCGACGCCAATGTCCCAGA-TGT
1 ATGCCAATGTCCCAAACATGGTCTTACACGT-AATC-AAATATCAACGCCAATGTCCCAGACAG-
14960340 GGTCTTACACGAAATC
63 GGTCTTACACGAAATC
14960356 ACATATCGAA
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
85 28 0.42
86 37 0.55
87 2 0.03
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (85 bp):
ATGCCAATGTCCCAAACATGGTCTTACACGTAATCAAATATCAACGCCAATGTCCCAGACAGGGT
CTTACACGAAATCGTATACG
Found at i:14960375 original size:44 final size:43
Alignment explanation
Indices: 14960191--14960365 Score: 162
Period size: 43 Copynumber: 4.0 Consensus size: 43
14960181 AAGCTCTTAC
* * * *
14960191 AATGCCAATGTCCCAAACGTGGTCTTACATGTAATCAAATATC-
1 AATGCC-ATGTCCCAGACGTGGTCTTACACGAAATCACATATCG
**
14960234 AATGCCACTGTCCCAGACAG-GGTCTTACACGAAATCGTATA-CG
1 AATGCCA-TGTCCCAGAC-GTGGTCTTACACGAAATCACATATCG
* * *
14960277 -ATGCCGATGTCCCAGACATGGTCTTACACGTAAATCTCAAATCG
1 AATGCC-ATGTCCCAGACGTGGTCTTACACG-AAATCACATATCG
* *
14960321 -ACGCCAATGTCCCAGATGTGGTCTTACACGAAATCACATATCG
1 AATGCC-ATGTCCCAGACGTGGTCTTACACGAAATCACATATCG
14960364 AA
1 AA
14960366 ATCCTATGTC
Statistics
Matches: 109, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
42 28 0.26
43 51 0.47
44 30 0.28
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (43 bp):
AATGCCATGTCCCAGACGTGGTCTTACACGAAATCACATATCG
Found at i:14961371 original size:13 final size:13
Alignment explanation
Indices: 14961353--14961379 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14961343 CACAAACGAT
14961353 AAAATTTTCACAC
1 AAAATTTTCACAC
14961366 AAAATTTTCACAC
1 AAAATTTTCACAC
14961379 A
1 A
14961380 TATTAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:14967654 original size:4 final size:4
Alignment explanation
Indices: 14967645--14967689 Score: 90
Period size: 4 Copynumber: 11.2 Consensus size: 4
14967635 GCCATTTTTT
14967645 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG T
14967690 TTCTGATTTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:14975485 original size:21 final size:21
Alignment explanation
Indices: 14975456--14975514 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
14975446 AAAAGCTACA
14975456 GAATTCTATCGGTAGAACTGG
1 GAATTCTATCGGTAGAACTGG
* * * * *
14975477 GATTTCTATTGATACAACTTG
1 GAATTCTATCGGTAGAACTGG
14975498 GAATTCTATCGGTAGAA
1 GAATTCTATCGGTAGAA
14975515 TGTACTCCAG
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.34
Consensus pattern (21 bp):
GAATTCTATCGGTAGAACTGG
Found at i:14978470 original size:42 final size:42
Alignment explanation
Indices: 14978396--14978587 Score: 201
Period size: 42 Copynumber: 4.6 Consensus size: 42
14978386 TCGAAAGCTG
* * * * * *
14978396 AACAGAAGCTCATGAGAGCTAAA-TAGATACCCATAAGGGTTG
1 AACAGAAGCTCATAAAAGCTAAACGA-AAACCCATAAGAGTTA
* * *
14978438 AACAGAAGCTCGTAAAAGCTGAACGAAAACCCATATGAGTTA
1 AACAGAAGCTCATAAAAGCTAAACGAAAACCCATAAGAGTTA
* * * *
14978480 AACAGAAGCTCATAAGAGCTGAACAAAAACTCATAAGAGTTA
1 AACAGAAGCTCATAAAAGCTAAACGAAAACCCATAAGAGTTA
* *
14978522 AACAGAAGCT-A-AAAGAGCTAAACGAAAACTCATATGAGTTA
1 AACAGAAGCTCATAAA-AGCTAAACGAAAACCCATAAGAGTTA
*
14978563 AATAGAAGCTCATAAAAGCTAAACG
1 AACAGAAGCTCATAAAAGCTAAACG
14978588 GAAAGTAAAA
Statistics
Matches: 127, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
40 2 0.02
41 33 0.26
42 88 0.69
43 4 0.03
ACGTcount: A:0.47, C:0.17, G:0.19, T:0.17
Consensus pattern (42 bp):
AACAGAAGCTCATAAAAGCTAAACGAAAACCCATAAGAGTTA
Found at i:14978504 original size:21 final size:21
Alignment explanation
Indices: 14978391--14978586 Score: 121
Period size: 21 Copynumber: 9.4 Consensus size: 21
14978381 GAAGCTCGAA
* *
14978391 AGCTGAACAGAAGCTCATGAG
1 AGCTAAACAGAAGCTCATAAG
* *
14978412 AGCTAAATAGATA-CCCATAAG
1 AGCTAAACAGA-AGCTCATAAG
* * * * *
14978433 GGTTGAACAGAAGCTCGTAAA
1 AGCTAAACAGAAGCTCATAAG
* * * *
14978454 AGCTGAAC-GAAAACCCATATG
1 AGCTAAACAG-AAGCTCATAAG
*
14978475 AGTTAAACAGAAGCTCATAAG
1 AGCTAAACAGAAGCTCATAAG
* * *
14978496 AGCTGAACAAAAACTCATAAG
1 AGCTAAACAGAAGCTCATAAG
* *
14978517 AGTTAAACAGAAGCT-AAAAG
1 AGCTAAACAGAAGCTCATAAG
* *
14978537 AGCTAAAC-GAAAACTCATATG
1 AGCTAAACAG-AAGCTCATAAG
* * *
14978558 AGTTAAATAGAAGCTCATAAA
1 AGCTAAACAGAAGCTCATAAG
14978579 AGCTAAAC
1 AGCTAAAC
14978587 GGAAAGTAAA
Statistics
Matches: 125, Mismatches: 43, Indels: 14
0.69 0.24 0.08
Matches are distributed among these distances:
19 1 0.01
20 17 0.14
21 104 0.83
22 3 0.02
ACGTcount: A:0.47, C:0.17, G:0.19, T:0.17
Consensus pattern (21 bp):
AGCTAAACAGAAGCTCATAAG
Found at i:14978576 original size:83 final size:83
Alignment explanation
Indices: 14978396--14978586 Score: 240
Period size: 83 Copynumber: 2.3 Consensus size: 83
14978386 TCGAAAGCTG
* * * * * * * *
14978396 AACAGAAGCTCATGAGAGCTAAATAGATACCCATAAGGGTTGAACAGAAGCTCGTAAAAGCTGAA
1 AACAGAAGCTCATAAGAGCTAAACAAAAACCCATAAGAGTTAAACAGAAGCTC-AAAAAGCTAAA
14978461 CGAAAACCCATATGAGTTA
65 CGAAAACCCATATGAGTTA
* *
14978480 AACAGAAGCTCATAAGAGCTGAACAAAAACTCATAAGAGTTAAACAGAAGCT-AAAAGAGCTAAA
1 AACAGAAGCTCATAAGAGCTAAACAAAAACCCATAAGAGTTAAACAGAAGCTCAAAA-AGCTAAA
*
14978544 CGAAAACTCATATGAGTTA
65 CGAAAACCCATATGAGTTA
* *
14978563 AATAGAAGCTCATAAAAGCTAAAC
1 AACAGAAGCTCATAAGAGCTAAAC
14978587 GGAAAGTAAA
Statistics
Matches: 92, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
82 3 0.03
83 45 0.49
84 44 0.48
ACGTcount: A:0.48, C:0.17, G:0.18, T:0.17
Consensus pattern (83 bp):
AACAGAAGCTCATAAGAGCTAAACAAAAACCCATAAGAGTTAAACAGAAGCTCAAAAAGCTAAAC
GAAAACCCATATGAGTTA
Found at i:14980434 original size:232 final size:232
Alignment explanation
Indices: 14980022--14980477 Score: 700
Period size: 232 Copynumber: 2.0 Consensus size: 232
14980012 GGCTGTTACA
* * * * * *
14980022 CTCTTAGTGTATTTCGATCTTAACAATTGGTATCAGAGCTAGAATTCTAGAGATAATTTTACCAC
1 CTCTTAGTGTATTTCAATCTTAAAAATTGGTATCAGAACTAGAACTCTAAAGACAATTTTACCAC
* * * * * *
14980087 TAAGAGAGAAGATCTTCAAGATATCTAGATGGAAGCCATAAGTTAAGAAATTTGCTTTATGGCAT
66 CAAGAGAGAAGATCCTCAAGATATCAAAATGGAAGCCATAAGTTAAGAAATTTACTTCATGGCAT
14980152 TGGAGCAAAATTCCACCATATTAGGAGAAGGGCATTCCACCATGAGGCCTCATTTATTCAATGGC
131 TGGAGCAAAATTCCACCATATTAGGAGAAGGGCATTCCACCATGAGGCCTCATTTATTCAATGGC
* *
14980217 ACCAACTACTTATATTGGAGAACAAGAATTTACCCCT
196 ACCAACTACTCATATTAGAGAACAAGAATTTACCCCT
* *
14980254 CTCTTGGTGTATTTCAATCTTAAAAATTGGTATC-GAAACTAGAACTCTAAAGACGATTTTACCA
1 CTCTTAGTGTATTTCAATCTTAAAAATTGGTATCAG-AACTAGAACTCTAAAGACAATTTTACCA
*
14980318 CCAAGAGAGAAGATCCTCAAGATATCAAAATGGAAGCTATAA-TTCAAGAAATTTACTTCATGGC
65 CCAAGAGAGAAGATCCTCAAGATATCAAAATGGAAGCCATAAGTT-AAGAAATTTACTTCATGGC
*
14980382 ATTGGAGCAAAATTCCACCATATTAGGAGAAGGGCATTCCACCATGAGGCCTCCTTTATTCAATG
129 ATTGGAGCAAAATTCCACCATATTAGGAGAAGGGCATTCCACCATGAGGCCTCATTTATTCAATG
* *
14980447 GCATCAACTACTCATATTAGAGAATAAGAAT
194 GCACCAACTACTCATATTAGAGAACAAGAAT
14980478 AAAGTTATTC
Statistics
Matches: 202, Mismatches: 20, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
231 3 0.01
232 199 0.99
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (232 bp):
CTCTTAGTGTATTTCAATCTTAAAAATTGGTATCAGAACTAGAACTCTAAAGACAATTTTACCAC
CAAGAGAGAAGATCCTCAAGATATCAAAATGGAAGCCATAAGTTAAGAAATTTACTTCATGGCAT
TGGAGCAAAATTCCACCATATTAGGAGAAGGGCATTCCACCATGAGGCCTCATTTATTCAATGGC
ACCAACTACTCATATTAGAGAACAAGAATTTACCCCT
Found at i:14986368 original size:21 final size:21
Alignment explanation
Indices: 14986320--14986381 Score: 87
Period size: 19 Copynumber: 3.1 Consensus size: 21
14986310 TTCTTCAAGG
14986320 ATATGCAATCTTAGATATG--
1 ATATGCAATCTTAGATATGAT
14986339 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
*
14986360 ATATACAATCTTAGA-A-GAT
1 ATATGCAATCTTAGATATGAT
14986379 ATA
1 ATA
14986382 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
19 25 0.62
20 1 0.03
21 14 0.35
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:14986410 original size:21 final size:23
Alignment explanation
Indices: 14986366--14986411 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
14986356 TGATATATAC
14986366 AATCTTAGAAGATATAATTTTGT
1 AATCTTAGAAGATATAATTTTGT
*
14986389 AATCTTAG-AGATTTAA-TTTGT
1 AATCTTAGAAGATATAATTTTGT
14986410 AA
1 AA
14986412 ATATCCTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 7 0.32
22 7 0.32
23 8 0.36
ACGTcount: A:0.39, C:0.04, G:0.13, T:0.43
Consensus pattern (23 bp):
AATCTTAGAAGATATAATTTTGT
Found at i:14986645 original size:23 final size:23
Alignment explanation
Indices: 14986601--14986645 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
14986591 TCTTATTTTG
* *
14986601 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
14986624 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
14986646 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:14987329 original size:3 final size:3
Alignment explanation
Indices: 14987323--14987352 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
14987313 TTATCTTTTC
14987323 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
14987353 TTTGTTCTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:15015692 original size:16 final size:16
Alignment explanation
Indices: 15015671--15015703 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
15015661 TTCGCTGTAT
*
15015671 TGGAATATAGGCGTAA
1 TGGAATAGAGGCGTAA
15015687 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
15015703 T
1 T
15015704 AGCAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.06, G:0.33, T:0.24
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:15015956 original size:18 final size:17
Alignment explanation
Indices: 15015935--15015969 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
15015925 TTATTATTAA
*
15015935 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
15015953 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
15015970 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:15016076 original size:18 final size:17
Alignment explanation
Indices: 15016053--15016089 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
15016043 AATTATTATT
15016053 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
15016069 AAATATATGATTTAATA
1 AAATATATGATTTAATA
15016086 AAAT
1 AAAT
15016090 TCTTAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:15016133 original size:120 final size:119
Alignment explanation
Indices: 15015915--15016315 Score: 626
Period size: 120 Copynumber: 3.4 Consensus size: 119
15015905 TTAATCATAT
*
15015915 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
* * *
15015980 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
66 CAATATTCTTATATGAATTTACTAAAATTATAATATAT-ATAATATAAAATATAA
15016035 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
* **
15016100 CAATATTCTTATATGAATTTACTAAAATTATAATATATAAAATATAATTTGA-AA
66 CAATATTCTTATATGAATTTACTAAAATTATAATATATATAATATAAAAT-ATAA
*
15016154 TTTGAA-ATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAT
1 TTT-AACATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAA
* * *
15016218 TAAATATTCTTATATGAATTTACTAAAATTATAATACATAATAGTATAAAATATAA
65 TCAATATTCTTATATGAATTTACTAAAATTATAATATAT-ATAATATAAAATATAA
* * *
15016274 TTTAAAATAATTATTATTAAATATAATTTAATAAAAATATAT
1 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATAT
15016316 AANNNNNNNN
Statistics
Matches: 260, Mismatches: 16, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
119 110 0.42
120 150 0.58
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.44
Consensus pattern (119 bp):
TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
CAATATTCTTATATGAATTTACTAAAATTATAATATATATAATATAAAATATAA
Found at i:15016195 original size:18 final size:17
Alignment explanation
Indices: 15016172--15016208 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 17
15016162 AATTATTATT
15016172 AAATATAT--TTTAATTA
1 AAATATATGATTTAA-TA
15016188 AAATATATGATTTAATA
1 AAATATATGATTTAATA
15016205 AAAT
1 AAAT
15016209 TCTTAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AAATATATGATTTAATA
Found at i:15020025 original size:23 final size:22
Alignment explanation
Indices: 15019986--15020029 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
15019976 AAATAGACTC
*
15019986 ATTCAGCTTCAATTTCATATATT
1 ATTCAGCCTCAATTTCA-ATATT
15020009 ATTCAGCCTCTAA-TTCAATAT
1 ATTCAGCCTC-AATTTCAATAT
15020030 CCACCATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 4 0.21
23 13 0.68
24 2 0.11
ACGTcount: A:0.32, C:0.20, G:0.05, T:0.43
Consensus pattern (22 bp):
ATTCAGCCTCAATTTCAATATT
Found at i:15020189 original size:37 final size:37
Alignment explanation
Indices: 15020103--15020189 Score: 108
Period size: 37 Copynumber: 2.3 Consensus size: 37
15020093 AATGTACTCT
15020103 TTCATAATTTCACTTTTTCACTTTCAATCACAATTCAA
1 TTCA-AATTTCACTTTTTCACTTTCAATCACAATTCAA
*
15020141 TTCAAAATTCACTTTTTCA-TTTCTAAGTCA-ATATTCAA
1 TTCAAATTTCACTTTTTCACTTTC-AA-TCACA-ATTCAA
15020179 TTC-AATTTCAC
1 TTCAAATTTCAC
15020190 ACCTATATTC
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
36 4 0.09
37 24 0.55
38 16 0.36
ACGTcount: A:0.32, C:0.22, G:0.01, T:0.45
Consensus pattern (37 bp):
TTCAAATTTCACTTTTTCACTTTCAATCACAATTCAA
Found at i:15020323 original size:45 final size:44
Alignment explanation
Indices: 15020259--15020351 Score: 141
Period size: 45 Copynumber: 2.1 Consensus size: 44
15020249 AATAGATACT
* * *
15020259 CGGTGGATTTAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATG-TGTC
*
15020304 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGTGTT
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGTGTC
15020348 CGGT
1 CGGT
15020352 TCACATAGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
44 7 0.16
45 37 0.84
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (44 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGTGTC
Found at i:15020451 original size:51 final size:48
Alignment explanation
Indices: 15020346--15020538 Score: 181
Period size: 51 Copynumber: 3.9 Consensus size: 48
15020336 AATCAATGTG
* * * * * *
15020346 TTCGGTTCACATAGTAGCCTGCGCATAGCACTACACATGTGGCCATTACCA
1 TTCGGTACACGTAGTAGCCTGCACATAGTACTACACA-GTGACCA--AACA
* * *
15020397 TTCGATGCACGTAGTAGCCTGCACATAGTACTACACAGGTGATCGAAACTA
1 TTCGGTACACGTAGTAGCCTGCACATAGTACTACACA-GTGA-CCAAAC-A
* * * *
15020448 TTCGGTACGCATAGTAGCCTGCACATAGTACTACACA-TCGACCTATCA
1 TTCGGTACACGTAGTAGCCTGCACATAGTACTACACAGT-GACCAAACA
15020496 TTCCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGA
1 TT-CGGTACACGTAGTAGCCTGCACATAGTACTACACA-GTGA
15020539 ACAACACTTT
Statistics
Matches: 118, Mismatches: 18, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
48 3 0.03
49 37 0.31
50 6 0.05
51 70 0.59
52 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (48 bp):
TTCGGTACACGTAGTAGCCTGCACATAGTACTACACAGTGACCAAACA
Found at i:15020562 original size:100 final size:101
Alignment explanation
Indices: 15020353--15020540 Score: 245
Period size: 100 Copynumber: 1.9 Consensus size: 101
15020343 GTGTTCGGTT
* * * *
15020353 CACATAGTAGCCTGCGCATAGCACTACACATGTGGCCATTACCATTCGATGCACGTAGTAGCCTG
1 CACATAGTAGCCTGCACATAGCACTACACATGCGACCA-TACCATTCGATACACGTAGTAGCCTG
* * *
15020418 CACATAGTACTACACAGGTGATCGAAACTATTCGGTA
65 CACATAGTACTACACACGTGAACGAAACTATTCCGTA
* * * *
15020455 CGCATAGTAGCCTGCACATAGTACTACACAT-CGACC-TATCATTCCGGTACACGTAGTAGCCTG
1 CACATAGTAGCCTGCACATAGCACTACACATGCGACCATACCATT-CGATACACGTAGTAGCCTG
15020518 CACATAGTACTACACACGTGAAC
65 CACATAGTACTACACACGTGAAC
15020541 AACACTTTCA
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
99 6 0.08
100 38 0.51
101 3 0.04
102 28 0.37
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (101 bp):
CACATAGTAGCCTGCACATAGCACTACACATGCGACCATACCATTCGATACACGTAGTAGCCTGC
ACATAGTACTACACACGTGAACGAAACTATTCCGTA
Found at i:15021003 original size:35 final size:35
Alignment explanation
Indices: 15020964--15021032 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
15020954 ATTAATCCTT
15020964 TTAGGCATTTTCATCGAAAATTACTTAGTACAAAA
1 TTAGGCATTTTCATCGAAAATTACTTAGTACAAAA
15020999 TTAGGCATTTTCATCGAAAATTACTTAGTACAAA
1 TTAGGCATTTTCATCGAAAATTACTTAGTACAAA
15021033 TCGTTTATCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (35 bp):
TTAGGCATTTTCATCGAAAATTACTTAGTACAAAA
Found at i:15021020 original size:20 final size:20
Alignment explanation
Indices: 15020964--15021021 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
15020954 ATTAATCCTT
15020964 TTAGGCATTTTCATCGAAAA
1 TTAGGCATTTTCATCGAAAA
*
15020984 TTA--C-TTAGT-A-C-AAAA
1 TTAGGCATT-TTCATCGAAAA
15020999 TTAGGCATTTTCATCGAAAA
1 TTAGGCATTTTCATCGAAAA
15021019 TTA
1 TTA
15021022 CTTAGTACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 14
0.64 0.04 0.31
Matches are distributed among these distances:
15 7 0.24
16 1 0.03
17 5 0.17
18 5 0.17
19 1 0.03
20 10 0.34
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (20 bp):
TTAGGCATTTTCATCGAAAA
Found at i:15022829 original size:20 final size:19
Alignment explanation
Indices: 15022779--15022829 Score: 61
Period size: 17 Copynumber: 2.7 Consensus size: 19
15022769 AATAGTTCTG
*
15022779 TCTCTTGATGAACAGTTGTA
1 TCTCTTG-TGAACAATTGTA
15022799 TCT-TT-TGAACAATTGTA
1 TCTCTTGTGAACAATTGTA
15022816 TCTCTTGGTGAACA
1 TCTCTT-GTGAACA
15022830 GATTCATTGC
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 14 0.52
18 2 0.07
19 2 0.07
20 9 0.33
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (19 bp):
TCTCTTGTGAACAATTGTA
Found at i:15023599 original size:16 final size:19
Alignment explanation
Indices: 15023580--15023623 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
15023570 TAATTAAATT
15023580 ATAATATAA-C-ACAA-AA
1 ATAATATAATCTACAAGAA
15023596 ATAATATAATCTACAAGAA
1 ATAATATAATCTACAAGAA
*
15023615 AAAATATAA
1 ATAATATAA
15023624 ACATAATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 9 0.38
17 1 0.04
18 4 0.17
19 10 0.42
ACGTcount: A:0.66, C:0.09, G:0.02, T:0.23
Consensus pattern (19 bp):
ATAATATAATCTACAAGAA
Found at i:15027463 original size:18 final size:17
Alignment explanation
Indices: 15027437--15027471 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
15027427 AATATTAAGA
*
15027437 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
15027454 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
15027472 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:15027722 original size:16 final size:16
Alignment explanation
Indices: 15027701--15027770 Score: 113
Period size: 16 Copynumber: 4.4 Consensus size: 16
15027691 TTGAATTGCT
*
15027701 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
*
15027717 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
15027733 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
15027749 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
15027765 AATACA
1 ATTACA
15027771 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 52 1.00
ACGTcount: A:0.26, C:0.36, G:0.03, T:0.36
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:15041984 original size:13 final size:13
Alignment explanation
Indices: 15041966--15042006 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
15041956 TAGATTTTTC
15041966 CTAAATATTATTA
1 CTAAATATTATTA
15041979 CTAAATA--ATT-
1 CTAAATATTATTA
*
15041989 CTAAATATTATCA
1 CTAAATATTATTA
15042002 CTAAA
1 CTAAA
15042007 AAATTCAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
10 7 0.29
11 3 0.12
12 2 0.08
13 12 0.50
ACGTcount: A:0.49, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
CTAAATATTATTA
Found at i:15041992 original size:23 final size:23
Alignment explanation
Indices: 15041966--15042017 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 23
15041956 TAGATTTTTC
* *
15041966 CTAAATATTATTACTAAATAATT
1 CTAAATATTATCACTAAAAAATT
15041989 CTAAATATTATCACTAAAAAATT
1 CTAAATATTATCACTAAAAAATT
*
15042012 CAAAAT
1 CTAAAT
15042018 TTAAAAATCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.37
Consensus pattern (23 bp):
CTAAATATTATCACTAAAAAATT
Found at i:15049172 original size:26 final size:26
Alignment explanation
Indices: 15049129--15049191 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 26
15049119 TGATTAAGAT
* *
15049129 AATAAAATAAGGAAATA-TGAAAAATA
1 AATAAAATAA-AAAATATTCAAAAATA
15049155 AATAAAATAAAAATATATTCAAAAATA
1 AATAAAATAAAAA-ATATTCAAAAATA
*
15049182 CA-AAAATAAA
1 AATAAAATAAA
15049192 TTTAAGAAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 2 0.06
26 21 0.66
27 9 0.28
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.21
Consensus pattern (26 bp):
AATAAAATAAAAAATATTCAAAAATA
Found at i:15050069 original size:13 final size:13
Alignment explanation
Indices: 15050053--15050095 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
15050043 TATATTTTTC
15050053 CTAAATATTATCA
1 CTAAATATTATCA
*
15050066 CTAAATA--ATTA
1 CTAAATATTATCA
15050077 -TAAATATTATCA
1 CTAAATATTATCA
15050089 CTAAATA
1 CTAAATA
15050096 ATTCAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 6 0.24
11 3 0.12
12 3 0.12
13 13 0.52
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:15050104 original size:23 final size:23
Alignment explanation
Indices: 15050054--15050098 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
15050044 ATATTTTTCC
15050054 TAAATATTATCACTAAATAATTA
1 TAAATATTATCACTAAATAATTA
15050077 TAAATATTATCACTAAATAATT
1 TAAATATTATCACTAAATAATT
15050099 CAAAATTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (23 bp):
TAAATATTATCACTAAATAATTA
Found at i:15053322 original size:14 final size:13
Alignment explanation
Indices: 15053298--15053331 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
15053288 ATTTTCATTG
15053298 TTTTAAATATATA
1 TTTTAAATATATA
*
15053311 TTTTACA-ATATA
1 TTTTAAATATATA
15053323 TTTTAAATA
1 TTTTAAATA
15053332 AATTGGTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (13 bp):
TTTTAAATATATA
Found at i:15060812 original size:40 final size:41
Alignment explanation
Indices: 15060754--15060841 Score: 106
Period size: 40 Copynumber: 2.2 Consensus size: 41
15060744 ATTTTATCTG
* *
15060754 AATTTTTGTAAATATTTTGTACTGTTAATTATAAGTTTTAT
1 AATTTTTGTAAATATTTTGTACTATTAATTATAAGTCTTAT
* * * * *
15060795 -ATTTTTGTGAATCTTTTGTATTATTCATTATAGGTCTTAT
1 AATTTTTGTAAATATTTTGTACTATTAATTATAAGTCTTAT
15060835 AATTTTT
1 AATTTTT
15060842 TCCATTTTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
40 33 0.85
41 6 0.15
ACGTcount: A:0.27, C:0.05, G:0.10, T:0.58
Consensus pattern (41 bp):
AATTTTTGTAAATATTTTGTACTATTAATTATAAGTCTTAT
Found at i:15060936 original size:34 final size:34
Alignment explanation
Indices: 15060888--15060953 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
15060878 CTACTATTAG
* *
15060888 AGTTTTAAGTCTTATTATTTTTGTTTCATTTTTT
1 AGTTTTAAGCCTTATCATTTTTGTTTCATTTTTT
15060922 AGTTTTAAGCCTTATCATTTTTGTTTCATTTT
1 AGTTTTAAGCCTTATCATTTTTGTTTCATTTT
15060954 GGTGAATATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.18, C:0.09, G:0.09, T:0.64
Consensus pattern (34 bp):
AGTTTTAAGCCTTATCATTTTTGTTTCATTTTTT
Found at i:15064418 original size:20 final size:21
Alignment explanation
Indices: 15064393--15064432 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
15064383 TTTTCAATGA
15064393 ATTTTTATTTATA-AAATTAT
1 ATTTTTATTTATATAAATTAT
*
15064413 ATTTTTATTTTTATAAATTA
1 ATTTTTATTTATATAAATTA
15064433 AATAAAACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
ATTTTTATTTATATAAATTAT
Found at i:15067429 original size:3 final size:3
Alignment explanation
Indices: 15067421--15067507 Score: 174
Period size: 3 Copynumber: 29.0 Consensus size: 3
15067411 GTTTCATCAG
15067421 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
15067469 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
15067508 CGTTTTAGTT
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 84 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:15076526 original size:68 final size:68
Alignment explanation
Indices: 15076392--15076531 Score: 156
Period size: 68 Copynumber: 2.1 Consensus size: 68
15076382 GTCTTCGTCT
* * ** ** *
15076392 ACAACCTACATGGCAGCTTATCTGCAAATATTGGTGGCTTCGCTCACAACCTTTATGGTGGTTTG
1 ACAACCTACATGGCAGCTTACCTGCAAATATTGGTGGCTTCGCTCACAAACTACATGGCAGCTTG
15076457 TCC
66 TCC
* * * *
15076460 ACAACCTACATGGTAGCTTGCCTGCGAATATTGGTGGCTTTG-TCCACAAACTACATGGCAGCTT
1 ACAACCTACATGGCAGCTTACCTGCAAATATTGGTGGCTTCGCT-CACAAACTACATGGCAGCTT
*
15076524 GTCT
65 GTCC
15076528 ACAA
1 ACAA
15076532 ATATTGATGG
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
67 1 0.02
68 58 0.98
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (68 bp):
ACAACCTACATGGCAGCTTACCTGCAAATATTGGTGGCTTCGCTCACAAACTACATGGCAGCTTG
TCC
Found at i:15076553 original size:22 final size:22
Alignment explanation
Indices: 15076486--15076553 Score: 59
Period size: 22 Copynumber: 3.0 Consensus size: 22
15076476 CTTGCCTGCG
*
15076486 AATATTGGTGGCTTTGTCCACA
1 AATATTGATGGCTTTGTCCACA
* * *
15076508 AACTA--CATGGCAGCTTGTCTACA
1 AA-TATTGATGGC--TTTGTCCACA
15076531 AATATTGATGGCTTTGTCCACA
1 AATATTGATGGCTTTGTCCACA
15076553 A
1 A
15076554 CCTATATGGT
Statistics
Matches: 34, Mismatches: 7, Indels: 10
0.67 0.14 0.20
Matches are distributed among these distances:
21 4 0.12
22 13 0.38
23 12 0.35
24 5 0.15
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (22 bp):
AATATTGATGGCTTTGTCCACA
Found at i:15076570 original size:23 final size:23
Alignment explanation
Indices: 15076436--15076570 Score: 75
Period size: 23 Copynumber: 6.0 Consensus size: 23
15076426 TGGCTTCGCT
* * *
15076436 CACAACCTTTATGGTGGTTTGTC
1 CACAACCTATATGGTAGCTTGTC
*
15076459 CACAACCTACATGGTAGCTTG-C
1 CACAACCTATATGGTAGCTTGTC
* *
15076481 CTGCGAA--TAT-TGGTGGCTTTGTC
1 C-AC-AACCTATATGGTAGC-TTGTC
* * *
15076504 CACAAACTACATGGCAGCTTGTC
1 CACAACCTATATGGTAGCTTGTC
* * * *
15076527 TACAA-ATAT-TGATGGCTTTGTC
1 CACAACCTATATGGTAGC-TTGTC
15076549 CACAACCTATATGGTAGCTTGT
1 CACAACCTATATGGTAGCTTGT
15076571 TTGCGAATAT
Statistics
Matches: 81, Mismatches: 21, Indels: 20
0.66 0.17 0.16
Matches are distributed among these distances:
21 12 0.15
22 19 0.23
23 38 0.47
24 12 0.15
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.33
Consensus pattern (23 bp):
CACAACCTATATGGTAGCTTGTC
Found at i:15076597 original size:45 final size:45
Alignment explanation
Indices: 15076447--15076589 Score: 207
Period size: 45 Copynumber: 3.2 Consensus size: 45
15076437 ACAACCTTTA
*
15076447 TGGTGG-TTTGTCCACAACCTACATGGTAGCTTGCCTGCGAATAT
1 TGGTGGCTTTGTCCACAACCTACATGGTAGCTTGTCTGCGAATAT
* * * *
15076491 TGGTGGCTTTGTCCACAAACTACATGGCAGCTTGTCTACAAATAT
1 TGGTGGCTTTGTCCACAACCTACATGGTAGCTTGTCTGCGAATAT
* * *
15076536 TGATGGCTTTGTCCACAACCTATATGGTAGCTTGTTTGCGAATAT
1 TGGTGGCTTTGTCCACAACCTACATGGTAGCTTGTCTGCGAATAT
15076581 TGGTGGCTT
1 TGGTGGCTT
15076590 CATCCACATA
Statistics
Matches: 85, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
44 6 0.07
45 79 0.93
ACGTcount: A:0.22, C:0.20, G:0.24, T:0.34
Consensus pattern (45 bp):
TGGTGGCTTTGTCCACAACCTACATGGTAGCTTGTCTGCGAATAT
Found at i:15080902 original size:42 final size:42
Alignment explanation
Indices: 15080841--15080984 Score: 198
Period size: 42 Copynumber: 3.4 Consensus size: 42
15080831 ACTGAGATGT
* * *
15080841 GATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTTATGT
1 GATT-CGTGTAAGACCATGTCTGGGACATTGGCATCGATATGA
*
15080884 GATTCGTGTAAGATCATGTCTGGGACATTGGCATCGATATGA
1 GATTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATGA
* * * *
15080926 GATTCATGTAACACCTTGTCTGGAACATTGGCATCGATATGA
1 GATTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATGA
*
15080968 AATTCGTGTAAGACCAT
1 GATTCGTGTAAGACCAT
15080985 AGCTAGCTAT
Statistics
Matches: 88, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 84 0.95
43 4 0.05
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (42 bp):
GATTCGTGTAAGACCATGTCTGGGACATTGGCATCGATATGA
Found at i:15081020 original size:84 final size:84
Alignment explanation
Indices: 15080848--15081006 Score: 189
Period size: 84 Copynumber: 1.9 Consensus size: 84
15080838 TGTGATTACG
* * * * ** * *
15080848 TGTAAGACCATGTCTGGGACATTGGCATTGTTATGTGATTCGTGTAAGATCATGTCTGGGACATT
1 TGTAACACCATGTCTGGAACATTGGCATCGATATGAAATTCGTGTAAGACCATGTCTGAGACATT
*
15080913 GGCATCGATATGAGATTCA
66 GGCATCGATATGAGATGCA
*
15080932 TGTAACACCTTGTCTGGAACATTGGCATCGATATGAAATTCGTGTAAGACCATAG-CT-AG-CTA
1 TGTAACACCATGTCTGGAACATTGGCATCGATATGAAATTCGTGTAAGACCAT-GTCTGAGAC-A
15080994 TTGGCATCGATAT
64 TTGGCATCGATAT
15081007 ATGATAGGAT
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
82 1 0.02
83 15 0.23
84 47 0.73
85 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (84 bp):
TGTAACACCATGTCTGGAACATTGGCATCGATATGAAATTCGTGTAAGACCATGTCTGAGACATT
GGCATCGATATGAGATGCA
Found at i:15083662 original size:20 final size:20
Alignment explanation
Indices: 15083637--15083736 Score: 112
Period size: 20 Copynumber: 5.0 Consensus size: 20
15083627 CTTGTACGGA
15083637 TTGCACTTTGGTGCCTCTGT
1 TTGCACTTTGGTGCCTCTGT
* *
15083657 TTGCAC-TTGGTGCCTTTTT
1 TTGCACTTTGGTGCCTCTGT
* *
15083676 TTACACTTCGGTGCCTCTGT
1 TTGCACTTTGGTGCCTCTGT
* * *
15083696 TCGCACTATGGTGCCACTGT
1 TTGCACTTTGGTGCCTCTGT
* *
15083716 TTGCACTTCGGTGCCTTTGT
1 TTGCACTTTGGTGCCTCTGT
15083736 T
1 T
15083737 ACGTATCTAT
Statistics
Matches: 63, Mismatches: 16, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
19 16 0.25
20 47 0.75
ACGTcount: A:0.08, C:0.26, G:0.23, T:0.43
Consensus pattern (20 bp):
TTGCACTTTGGTGCCTCTGT
Found at i:15083723 original size:40 final size:39
Alignment explanation
Indices: 15083637--15083736 Score: 128
Period size: 40 Copynumber: 2.5 Consensus size: 39
15083627 CTTGTACGGA
* * ** *
15083637 TTGCACTTTGGTGCCTCTGTTTGCACTTGGTGCCTTTTT
1 TTGCACTTCGGTGCCTCTGTTCGCACTTGGTGCCACTGT
*
15083676 TTACACTTCGGTGCCTCTGTTCGCACTATGGTGCCACTGT
1 TTGCACTTCGGTGCCTCTGTTCGCACT-TGGTGCCACTGT
*
15083716 TTGCACTTCGGTGCCTTTGTT
1 TTGCACTTCGGTGCCTCTGTT
15083737 ACGTATCTAT
Statistics
Matches: 52, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 24 0.46
40 28 0.54
ACGTcount: A:0.08, C:0.26, G:0.23, T:0.43
Consensus pattern (39 bp):
TTGCACTTCGGTGCCTCTGTTCGCACTTGGTGCCACTGT
Found at i:15087999 original size:18 final size:19
Alignment explanation
Indices: 15087973--15088008 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
15087963 CATGTGTTAT
*
15087973 AAATTACATAATA-AATAA
1 AAATAACATAATATAATAA
15087991 AAATAACATAATATAATA
1 AAATAACATAATATAATA
15088009 TATTATAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.28
Consensus pattern (19 bp):
AAATAACATAATATAATAA
Found at i:15090254 original size:44 final size:44
Alignment explanation
Indices: 15090177--15090281 Score: 103
Period size: 45 Copynumber: 2.4 Consensus size: 44
15090167 CTCATTTTCA
* *
15090177 TTTCCA-TT-TCCATTTTGAGAAACCTAAATTCATTTCTAAATG
1 TTTCCATTTCTCCATTTCGAGAAACCTAAATTCATTCCTAAATG
*
15090219 ATTT-CATTTCTCCATTTCGAAGAAACCGT-AA-TCATTCCTGAATG
1 -TTTCCATTTCTCCATTTCG-AGAAACC-TAAATTCATTCCTAAATG
*
15090263 TTTCCCATTTCTCTATTTC
1 TTT-CCATTTCTCCATTTC
15090282 TATCTATTCT
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.04
43 8 0.15
44 19 0.37
45 22 0.42
46 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.08, T:0.43
Consensus pattern (44 bp):
TTTCCATTTCTCCATTTCGAGAAACCTAAATTCATTCCTAAATG
Found at i:15101193 original size:22 final size:23
Alignment explanation
Indices: 15101165--15101208 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
15101155 GGCTTTATTT
15101165 ATTTGGTTT-TTATATTT-TTTGC
1 ATTTGGTTTATTAT-TTTCTTTGC
15101187 ATTTGGTTTATTATTTTCTTTG
1 ATTTGGTTTATTATTTTCTTTG
15101209 TGTATGCGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.14, C:0.05, G:0.14, T:0.68
Consensus pattern (23 bp):
ATTTGGTTTATTATTTTCTTTGC
Found at i:15107366 original size:6 final size:6
Alignment explanation
Indices: 15107344--15107384 Score: 64
Period size: 6 Copynumber: 6.5 Consensus size: 6
15107334 TTCCAAATGA
15107344 TTTCAT TTCTCCAT TTTCAT TTTCAT TTTCAT TTTCAT TTT
1 TTTCAT TT-T-CAT TTTCAT TTTCAT TTTCAT TTTCAT TTT
15107385 GGAGAAAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 26 0.79
7 2 0.06
8 5 0.15
ACGTcount: A:0.15, C:0.20, G:0.00, T:0.66
Consensus pattern (6 bp):
TTTCAT
Found at i:15110488 original size:21 final size:20
Alignment explanation
Indices: 15110430--15110490 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 20
15110420 ATTATTGTTG
*
15110430 AATTGCACATACGTGCCTCT
1 AATTGCACATACGTGCCCCT
* * *
15110450 ATTTGTAC-TTCAGTGCCCCT
1 AATTGCACATAC-GTGCCCCT
15110470 AAATTGCACATACGTGCCCCT
1 -AATTGCACATACGTGCCCCT
15110491 GTTTGTACTT
Statistics
Matches: 31, Mismatches: 7, Indels: 5
0.72 0.16 0.12
Matches are distributed among these distances:
19 2 0.06
20 13 0.42
21 14 0.45
22 2 0.06
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.31
Consensus pattern (20 bp):
AATTGCACATACGTGCCCCT
Found at i:15110555 original size:41 final size:41
Alignment explanation
Indices: 15110428--15110559 Score: 176
Period size: 41 Copynumber: 3.2 Consensus size: 41
15110418 AGATTATTGT
* * *
15110428 TGAATTGCACATACGTGCCTCTATTTGTACTTCAGTGCCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCCC
* *
15110469 TAAATTGCACATACGTGCCCCTGTTTGTACTTCAGCACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCCC
* * * *
15110510 TGAATTACACATACGTGCCCCTGTTTGTACTTCGGTAACCA
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCCC
15110551 TGAA-TGCAC
1 TGAATTGCAC
15110560 TTTTGTGCCC
Statistics
Matches: 79, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
40 4 0.05
41 75 0.95
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.31
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCCC
Found at i:15110700 original size:12 final size:12
Alignment explanation
Indices: 15110680--15110712 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
15110670 TTATTCGTTC
*
15110680 TTGTGGATTGTT
1 TTGTAGATTGTT
15110692 TTGTAGATTGTT
1 TTGTAGATTGTT
15110704 TTGTAGATT
1 TTGTAGATT
15110713 ATCGTTACTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.27, T:0.58
Consensus pattern (12 bp):
TTGTAGATTGTT
Found at i:15119267 original size:48 final size:48
Alignment explanation
Indices: 15119196--15119312 Score: 227
Period size: 48 Copynumber: 2.5 Consensus size: 48
15119186 GAGTGGAAGA
15119196 TGTTCGACTCAAGAAGCGAAAGGAAGCGGATTAGGATCAAATTTAAGT
1 TGTTCGACTCAAGAAGCGAAAGGAAGCGGATTAGGATCAAATTTAAGT
15119244 TGTTCGACTCAAGAAGCGAAAGGAAGCGGATTAGGATCAAATTTAAGT
1 TGTTCGACTCAAGAAGCGAAAGGAAGCGGATTAGGATCAAATTTAAGT
15119292 TGTTCGACTCAAGAAG-GAAAG
1 TGTTCGACTCAAGAAGCGAAAG
15119313 ATTTGGGTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
47 5 0.07
48 64 0.93
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.22
Consensus pattern (48 bp):
TGTTCGACTCAAGAAGCGAAAGGAAGCGGATTAGGATCAAATTTAAGT
Found at i:15119415 original size:16 final size:16
Alignment explanation
Indices: 15119396--15119445 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
15119386 AAGAACTAAG
15119396 AATAAATATTTAAAAT
1 AATAAATATTTAAAAT
*
15119412 AATAAATA---AATA-
1 AATAAATATTTAAAAT
15119424 AATAAATATTTAAAAT
1 AATAAATATTTAAAAT
15119440 AATAAA
1 AATAAA
15119446 GAACCGATGG
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 8 0.29
13 3 0.11
15 3 0.11
16 14 0.50
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
AATAAATATTTAAAAT
Found at i:15120192 original size:13 final size:13
Alignment explanation
Indices: 15120174--15120199 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15120164 CACCTTACAC
15120174 TTTACTATTTGGA
1 TTTACTATTTGGA
15120187 TTTACTATTTGGA
1 TTTACTATTTGGA
15120200 GTTGTGCCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54
Consensus pattern (13 bp):
TTTACTATTTGGA
Found at i:15122871 original size:15 final size:15
Alignment explanation
Indices: 15122846--15122880 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
15122836 AACTCTATTT
*
15122846 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
15122860 TAATTAATATTAAGA
1 TAATTAATATTAAGA
15122875 TAATTA
1 TAATTA
15122881 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:15122923 original size:10 final size:10
Alignment explanation
Indices: 15122905--15122952 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
15122895 ATTTTAGGAT
15122905 TTTAT-TTTA
1 TTTATCTTTA
15122914 TTTATCTTTA
1 TTTATCTTTA
15122924 TTTATCTTTA
1 TTTATCTTTA
* ** *
15122934 ATTAAATGTA
1 TTTATCTTTA
15122944 TTTATCTTT
1 TTTATCTTT
15122953 CGGGAATTTA
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
9 5 0.17
10 25 0.83
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.67
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:15128253 original size:18 final size:17
Alignment explanation
Indices: 15128232--15128269 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
15128222 TCTCGGTAAC
15128232 AAGT-AAAAAGAAAAGCAA
1 AAGTGAAAAA-AAAAG-AA
15128250 AAGTGAAAAAAAAAGAA
1 AAGTGAAAAAAAAAGAA
15128267 AAG
1 AAG
15128270 AAGAAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 9 0.47
19 5 0.26
ACGTcount: A:0.74, C:0.03, G:0.18, T:0.05
Consensus pattern (17 bp):
AAGTGAAAAAAAAAGAA
Found at i:15128275 original size:18 final size:19
Alignment explanation
Indices: 15128236--15128277 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
15128226 GGTAACAAGT
*
15128236 AAAAAGAAAAGCAAAAGTG
1 AAAAAGAAAAGCAAAAGAG
15128255 AAAAA-AAAAG-AAAAGAAG
1 AAAAAGAAAAGCAAAAG-AG
15128273 AAAAA
1 AAAAA
15128278 TAGTAACCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 5 0.24
18 11 0.52
19 5 0.24
ACGTcount: A:0.79, C:0.02, G:0.17, T:0.02
Consensus pattern (19 bp):
AAAAAGAAAAGCAAAAGAG
Found at i:15139270 original size:11 final size:11
Alignment explanation
Indices: 15139248--15139347 Score: 68
Period size: 11 Copynumber: 9.4 Consensus size: 11
15139238 AACTAATCCT
15139248 CTCTCAAATTTC
1 CTCTC-AATTTC
15139260 CTCTCAATTTC
1 CTCTCAATTTC
*
15139271 CTCTCAATTTG
1 CTCTCAATTTC
*
15139282 CTCTCAAATTC
1 CTCTCAATTTC
15139293 CT-TCCAAATTT-
1 CTCT-C-AATTTC
*
15139304 CTCTCAA-ATC
1 CTCTCAATTTC
* *
15139314 C-AT--ATTTA
1 CTCTCAATTTC
* *
15139322 ATCTCAATTTG
1 CTCTCAATTTC
15139333 CTCTCAATTTC
1 CTCTCAATTTC
15139344 CTCT
1 CTCT
15139348 TAAATTTCTC
Statistics
Matches: 67, Mismatches: 13, Indels: 17
0.69 0.13 0.18
Matches are distributed among these distances:
7 1 0.01
8 1 0.01
9 3 0.04
10 4 0.06
11 48 0.72
12 10 0.15
ACGTcount: A:0.24, C:0.31, G:0.02, T:0.43
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:15139285 original size:22 final size:22
Alignment explanation
Indices: 15139248--15139312 Score: 80
Period size: 22 Copynumber: 2.9 Consensus size: 22
15139238 AACTAATCCT
*
15139248 CTCTCAAATTTCCTCTCAATTTC
1 CTCTCAAATTT-CTCTCAAATTC
15139271 CTCTC-AATTTGCTCTCAAATTC
1 CTCTCAAATTT-CTCTCAAATTC
15139293 CT-TCCAAATTTCTCTCAAAT
1 CTCT-CAAATTTCTCTCAAAT
15139313 CCATATTTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
21 1 0.03
22 27 0.71
23 10 0.26
ACGTcount: A:0.25, C:0.32, G:0.02, T:0.42
Consensus pattern (22 bp):
CTCTCAAATTTCTCTCAAATTC
Found at i:15139332 original size:51 final size:51
Alignment explanation
Indices: 15139272--15139371 Score: 148
Period size: 51 Copynumber: 2.0 Consensus size: 51
15139262 CTCAATTTCC
15139272 TCTCAATTTGCTCTCAAATTCCT-TCCAAATTTCTCTCAAATCCATATTTAA
1 TCTCAATTTGCTCTCAAATTCCTCT-CAAATTTCTCTCAAATCCATATTTAA
* * * *
15139323 TCTCAATTTGCTCTCAATTTCCTCTTAAATTTCTCTTAAATCCCTATTT
1 TCTCAATTTGCTCTCAAATTCCTCTCAAATTTCTCTCAAATCCATATTT
15139372 TTAAATAATT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 43 0.98
52 1 0.02
ACGTcount: A:0.26, C:0.27, G:0.02, T:0.45
Consensus pattern (51 bp):
TCTCAATTTGCTCTCAAATTCCTCTCAAATTTCTCTCAAATCCATATTTAA
Found at i:15145134 original size:124 final size:124
Alignment explanation
Indices: 15144914--15145290 Score: 596
Period size: 124 Copynumber: 3.0 Consensus size: 124
15144904 CCCAAGCATG
* * *
15144914 CTACTGTAGCAAAAGCGCGTCCACGAGGGTACGATTTTCACAAATTCTTCTCGAATAGCATCCTC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGTGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
15144979 CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTATTTCTTCCATGAC
66 CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTATTTCTTCCATGAC
15145038 CTACTGTAGCAAAAGCGCGTCCACGAGGGTGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGTGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
*
15145103 CTAGAAGCGATTTTATACTATTTGCTTAGAAACGTCAAAAAAAAATTATTTCTTCCATGAC
66 CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTC--AAAAAAATTATTTCTTCCATGAC
* * *
15145164 CTACTGTAGCAAAAGCACGTCCACTAGGGCGCGA-TTTCACAAATTCTTCTCAAATAGCAT-CTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGTGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
* * ** *
15145227 CTAGAAGCGATTTTATACTATATGATCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
66 CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAA--AAAAATTATTTCTTCCATGAC
15145288 CTA
1 CTA
15145291 AAAATCCTAA
Statistics
Matches: 236, Mismatches: 13, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
122 2 0.01
124 154 0.65
125 26 0.11
126 54 0.23
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (124 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGTGCGATTTTCACAAATTCTTCTCAAATAGCATCCTG
CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTATTTCTTCCATGAC
Found at i:15154629 original size:24 final size:23
Alignment explanation
Indices: 15154579--15154634 Score: 67
Period size: 24 Copynumber: 2.4 Consensus size: 23
15154569 TTTAATTGAG
* *
15154579 TTTTAAAAATTTCTTAAAATAAT
1 TTTTAAAATTTTCTTAAAATAAA
*
15154602 TTTTAAAATTTTCATTTAAATAAA
1 TTTTAAAATTTTC-TTAAAATAAA
*
15154626 TTTTTAAAT
1 TTTTAAAAT
15154635 CAATTTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 12 0.43
24 16 0.57
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.52
Consensus pattern (23 bp):
TTTTAAAATTTTCTTAAAATAAA
Found at i:15154651 original size:12 final size:12
Alignment explanation
Indices: 15154579--15154651 Score: 53
Period size: 12 Copynumber: 6.0 Consensus size: 12
15154569 TTTAATTGAG
15154579 TTTTAAA-AATT
1 TTTTAAATAATT
*
15154590 TCTTAAAATAA-T
1 T-TTTAAATAATT
*
15154602 TTTTAAA-ATTT
1 TTTTAAATAATT
*
15154613 TCATTTAAATAAAT
1 T--TTTAAATAATT
15154627 TTTTAAATCAATT
1 TTTTAAAT-AATT
*
15154640 TTTTATATAATT
1 TTTTAAATAATT
15154652 AAACTACAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
10 1 0.02
11 8 0.17
12 18 0.38
13 18 0.38
14 3 0.06
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.53
Consensus pattern (12 bp):
TTTTAAATAATT
Found at i:15154977 original size:2 final size:2
Alignment explanation
Indices: 15154972--15155026 Score: 92
Period size: 2 Copynumber: 27.5 Consensus size: 2
15154962 TAAATATAAC
* *
15154972 AT AT AT AT CT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15155014 AT AT AT AT AT AT A
1 AT AT AT AT AT AT A
15155027 AAAGCATGAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:15154989 original size:14 final size:14
Alignment explanation
Indices: 15154965--15155026 Score: 90
Period size: 14 Copynumber: 4.5 Consensus size: 14
15154955 CTCTCTTTAA
15154965 ATATA-ACATATAT
1 ATATATACATATAT
*
15154978 ATCTATACATATAT
1 ATATATACATATAT
*
15154992 ATATATATATATAT
1 ATATATACATATAT
*
15155006 ATATATATATATAT
1 ATATATACATATAT
15155020 ATATATA
1 ATATATA
15155027 AAAGCATGAG
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
13 4 0.09
14 41 0.91
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (14 bp):
ATATATACATATAT
Found at i:15155706 original size:22 final size:22
Alignment explanation
Indices: 15155659--15155703 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
15155649 ATGCAATCTT
*
15155659 AGATATGATATGCAATCTTAGA
1 AGATATGATATGCAATATTAGA
* *
15155681 AGATATGATTTTGTAATATTAGA
1 AGATATGA-TATGCAATATTAGA
15155704 GATTTAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.40, C:0.04, G:0.18, T:0.38
Consensus pattern (22 bp):
AGATATGATATGCAATATTAGA
Found at i:15165170 original size:40 final size:40
Alignment explanation
Indices: 15165071--15165171 Score: 166
Period size: 40 Copynumber: 2.5 Consensus size: 40
15165061 GGTTCTGTGC
* * * *
15165071 CTAGCAGACTTAATGCCGGCGAATTTTTCAGACTTAATGT
1 CTAGCAGGCTTAATGCCGGTGAACTTTACAGACTTAATGT
15165111 CTAGCAGGCTTAATGCCGGTGAACTTTACAGACTTAATGT
1 CTAGCAGGCTTAATGCCGGTGAACTTTACAGACTTAATGT
15165151 CTAGCAGGCTTAATGCCGGTG
1 CTAGCAGGCTTAATGCCGGTG
15165172 TTCTGAGTAA
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.30
Consensus pattern (40 bp):
CTAGCAGGCTTAATGCCGGTGAACTTTACAGACTTAATGT
Found at i:15166851 original size:18 final size:20
Alignment explanation
Indices: 15166828--15166866 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
15166818 GGTTTTTTTC
15166828 ATAAATA-AT-ATAAAATAA
1 ATAAATACATAATAAAATAA
15166846 ATAAATATCATAATAAAATAA
1 ATAAATA-CATAATAAAATAA
15166867 GAGGATTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
20 2 0.11
21 9 0.50
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (20 bp):
ATAAATACATAATAAAATAA
Found at i:15167128 original size:85 final size:85
Alignment explanation
Indices: 15167039--15167215 Score: 250
Period size: 84 Copynumber: 2.1 Consensus size: 85
15167029 ATAGTATACG
* *
15167039 AAAAAATGAAAATAATAATT-TTTATTGGTGCCGCCGATGTCTTAGGCGGCACCCAAATATTTTA
1 AAAAAAT-AAAA-AA-AATTATTTATTGGTGCAGCCGATGTCTCAGGCGGCACCCAAATATTTTA
**
15167103 AATTTTTTT-AGCTAAAATGATA
63 AATTTTTTTAAGCTAAAACAATA
* *
15167125 AAAAAATAAAAAAAATTATTTATTGGTGCAGCCGATGTGTCAGGCGGCACCCAAATATTTTTAAT
1 AAAAAATAAAAAAAATTATTTATTGGTGCAGCCGATGTCTCAGGCGGCACCCAAATATTTTAAAT
*
15167190 TTTTTTAAGCTGAAACAATA
66 TTTTTTAAGCTAAAACAATA
15167210 AAAAAA
1 AAAAAA
15167216 ACTTGTATAA
Statistics
Matches: 82, Mismatches: 7, Indels: 5
0.87 0.07 0.05
Matches are distributed among these distances:
83 4 0.05
84 51 0.62
85 20 0.24
86 7 0.09
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (85 bp):
AAAAAATAAAAAAAATTATTTATTGGTGCAGCCGATGTCTCAGGCGGCACCCAAATATTTTAAAT
TTTTTTAAGCTAAAACAATA
Found at i:15170377 original size:67 final size:68
Alignment explanation
Indices: 15170269--15170430 Score: 274
Period size: 67 Copynumber: 2.4 Consensus size: 68
15170259 GTGATTTATG
* *
15170269 TATTGAATTTTCATTCTTGAATCAACTTAAATTATTTACATATATTTGCTTTATGTTTCTA-TTT
1 TATTGAATTTTCATTCTTGTATCAACTTAAATTATTTACATATATTTGCATTATGTTTCTATTTT
15170333 TCT
66 TCT
*
15170336 TATTGTATTTTCATTCTTGTATCAACTTAAATTATTTACATATATTTGCATTATGTTTCTATTTT
1 TATTGAATTTTCATTCTTGTATCAACTTAAATTATTTACATATATTTGCATTATGTTTCTATTTT
*
15170401 TTT
66 TCT
15170404 TATTGAATTTTCATTCTT-TATCAACTT
1 TATTGAATTTTCATTCTTGTATCAACTT
15170431 CATAGATGAA
Statistics
Matches: 89, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
67 67 0.75
68 22 0.25
ACGTcount: A:0.26, C:0.12, G:0.06, T:0.57
Consensus pattern (68 bp):
TATTGAATTTTCATTCTTGTATCAACTTAAATTATTTACATATATTTGCATTATGTTTCTATTTT
TCT
Found at i:15175485 original size:27 final size:27
Alignment explanation
Indices: 15175455--15175916 Score: 318
Period size: 27 Copynumber: 17.5 Consensus size: 27
15175445 AATGCCCCCA
* *
15175455 TAGGGTAAAATGATCGAAATACCCTCG
1 TAGGGTAAAATGACCGTAATACCCTCG
* *** * *
15175482 TAGGGTAGAAT-ACTAAAATACCCCCA
1 TAGGGTAAAATGACCGTAATACCCTCG
**
15175508 TAGGGTAAAATGATTGTAATACCC-CTG
1 TAGGGTAAAATGACCGTAATACCCTC-G
* **
15175535 TAAGGTAAAATGACTTTAATACCC-CTG
1 TAGGGTAAAATGACCGTAATACCCTC-G
* * *
15175562 AAGGGTAAAATGATCGTAATGTCCCT-G
1 TAGGGTAAAATGACCGTAAT-ACCCTCG
* *
15175589 TAGGGTAAAATGACTGTAATACCC-CTA
1 TAGGGTAAAATGACCGTAATACCCTC-G
* * *
15175616 TAGGGTAAAATAACCGCAATGCCCAT-G
1 TAGGGTAAAATGACCGTAATACCC-TCG
* * *
15175643 TAGGGTAAAATGATCGAAATACCCTCA
1 TAGGGTAAAATGACCGTAATACCCTCG
* *
15175670 TAGAGTAAAATAACCGTAATACCC-CTG
1 TAGGGTAAAATGACCGTAATACCCTC-G
* *
15175697 TATGGTAAAATAACCGT-A-A---T-G
1 TAGGGTAAAATGACCGTAATACCCTCG
* *
15175718 CA-GGTAAAATGACCATAATACCC-CTG
1 TAGGGTAAAATGACCGTAATACCCTC-G
* *
15175744 TAGGGTAAAATGAACATAATACCC-CTG
1 TAGGGTAAAATGACCGTAATACCCTC-G
15175771 TAGGGTAAAATGACCGTAA-ATCCCT-G
1 TAGGGTAAAATGACCGTAATA-CCCTCG
*
15175797 TAGGGTAAAATGACCGTAATGCCCTCG
1 TAGGGTAAAATGACCGTAATACCCTCG
* *
15175824 TAGGGTAAAATGACCGTAATGCCC-CTA
1 TAGGGTAAAATGACCGTAATACCCTC-G
* * *
15175851 TAGGGTAAAAGGAACGTAATACCCTTG
1 TAGGGTAAAATGACCGTAATACCCTCG
* * *
15175878 TAGGGTAAAATGATCGTAATGCCCTGG
1 TAGGGTAAAATGACCGTAATACCCTCG
15175905 T-GGGT-AAATGAC
1 TAGGGTAAAATGAC
15175917 AATTTTTGCC
Statistics
Matches: 349, Mismatches: 61, Indels: 52
0.76 0.13 0.11
Matches are distributed among these distances:
20 12 0.03
21 3 0.01
22 1 0.00
25 7 0.02
26 59 0.17
27 264 0.76
28 3 0.01
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
TAGGGTAAAATGACCGTAATACCCTCG
Found at i:15175574 original size:54 final size:54
Alignment explanation
Indices: 15175456--15175897 Score: 351
Period size: 54 Copynumber: 8.4 Consensus size: 54
15175446 ATGCCCCCAT
* * * ** *
15175456 AGGGTAAAATGATCGAAATA-CCCTCGTAGGGTAGAAT-ACTAAAATACCCC-CA
1 AGGGTAAAATGACCGTAATACCCCT-GTAGGGTAAAATGACTGTAATACCCCTGA
** * *
15175508 TAGGGTAAAATGATTGTAATACCCCTGTAAGGTAAAATGACTTTAATACCCCTGA
1 -AGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGACTGTAATACCCCTGA
* **
15175563 AGGGTAAAATGATCGTAATGTCCCTGTAGGGTAAAATGACTGTAATACCCCT-A
1 AGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGACTGTAATACCCCTGA
* * * * * *
15175616 TAGGGTAAAATAACCGCAATGCCCATGTAGGGTAAAATGA-TCGAAATA-CCCTCA
1 -AGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGACT-GTAATACCCCTGA
* * * * * *
15175670 TAGAGTAAAATAACCGTAATACCCCTGTATGGTAAAATAACCGT-A-A----TGC
1 -AGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGACTGTAATACCCCTGA
* * *
15175719 A-GGTAAAATGACCATAATACCCCTGTAGGGTAAAATGAAC-ATAATACCCCTGT
1 AGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAATG-ACTGTAATACCCCTGA
* * * *
15175772 AGGGTAAAATGACCGTAA-ATCCCTGTAGGGTAAAATGACCGTAAT-GCCCTCGT
1 AGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGACTGTAATACCCCT-GA
* * * * *
15175825 AGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAAGGAAC-GTAATACCCTTGT
1 AGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAATG-ACTGTAATACCCCTGA
*
15175879 AGGGTAAAATGATCGTAAT
1 AGGGTAAAATGACCGTAAT
15175898 GCCCTGGTGG
Statistics
Matches: 323, Mismatches: 46, Indels: 39
0.79 0.11 0.10
Matches are distributed among these distances:
47 32 0.10
48 4 0.01
49 2 0.01
52 7 0.02
53 80 0.25
54 192 0.59
55 6 0.02
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.24
Consensus pattern (54 bp):
AGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGACTGTAATACCCCTGA
Found at i:15175612 original size:81 final size:81
Alignment explanation
Indices: 15175508--15175916 Score: 419
Period size: 81 Copynumber: 5.2 Consensus size: 81
15175498 AATACCCCCA
** * ** *
15175508 TAGGGTAAAATGATTGTAATACCCCTGTAAGGTAAAATGACTTTAATACCCCTGAAGGGTAAAAT
1 TAGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAAT
15175573 GATCGTAATGTCCCT-G
66 GATCGTAATG-CCCTCG
* * * * * *
15175589 TAGGGTAAAATGACTGTAATACCCCTATAGGGTAAAATAACCGCAATGCCCATGTAGGGTAAAAT
1 TAGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAAT
* * *
15175654 GATCGAAATACCCTCA
66 GATCGTAATGCCCTCG
* * * * *
15175670 TAGAGTAAAATAACCGTAATACCCCTGTATGGTAAAATAACCGT-A-A----TGCA-GGTAAAAT
1 TAGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAAT
* * *
15175728 GACCATAATACCC-CTG
66 GATCGTAATGCCCTC-G
* * *
15175744 TAGGGTAAAATGAACATAATACCCCTGTAGGGTAAAATGACCGTAA-ATCCCTGTAGGGTAAAAT
1 TAGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAAT
*
15175808 GACCGTAATGCCCTCG
66 GATCGTAATGCCCTCG
* * * * *
15175824 TAGGGTAAAATGACCGTAATGCCCCTATAGGGTAAAAGGAACGTAATACCCTTGTAGGGTAAAAT
1 TAGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAAT
*
15175889 GATCGTAATGCCCTGG
66 GATCGTAATGCCCTCG
15175905 T-GGGT-AAATGAC
1 TAGGGTAAAATGAC
15175917 AATTTTTGCC
Statistics
Matches: 274, Mismatches: 44, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
73 1 0.00
74 56 0.20
75 5 0.02
79 10 0.04
80 69 0.25
81 133 0.49
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (81 bp):
TAGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAAT
GATCGTAATGCCCTCG
Found at i:15175858 original size:107 final size:106
Alignment explanation
Indices: 15175720--15175916 Score: 290
Period size: 107 Copynumber: 1.8 Consensus size: 106
15175710 CCGTAATGCA
* *
15175720 GGTAAAATGACCATAATACCCCTGTAGGGTAAAATGAACATAATACCCCTGTAGGGTAAAATGAC
1 GGTAAAATGACCATAATACCCCTATAGGGTAAAAGGAACATAATACCCCTGTAGGGTAAAATGAC
15175785 CGTAAAT-CCCT-GTAGGGTAAAATGACCGTAATGCCCTCGTAG
66 CGT-AATGCCCTGGT-GGGT-AAATGACCGTAATGCCCTCGTAG
* * * * *
15175827 GGTAAAATGACCGTAATGCCCCTATAGGGTAAAAGGAACGTAATACCCTTGTAGGGTAAAATGAT
1 GGTAAAATGACCATAATACCCCTATAGGGTAAAAGGAACATAATACCCCTGTAGGGTAAAATGAC
15175892 CGTAATGCCCTGGTGGGTAAATGAC
66 CGTAATGCCCTGGTGGGTAAATGAC
15175917 AATTTTTGCC
Statistics
Matches: 81, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
106 10 0.12
107 69 0.85
108 2 0.02
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.23
Consensus pattern (106 bp):
GGTAAAATGACCATAATACCCCTATAGGGTAAAAGGAACATAATACCCCTGTAGGGTAAAATGAC
CGTAATGCCCTGGTGGGTAAATGACCGTAATGCCCTCGTAG
Found at i:15176232 original size:32 final size:31
Alignment explanation
Indices: 15176191--15176399 Score: 195
Period size: 32 Copynumber: 6.5 Consensus size: 31
15176181 ACTGCGATGC
*
15176191 TACTGATGGCTTTGTGCCGATCATTGTACCAT
1 TACTGATGGCTTTGTGCCGATCATT-TACCGT
* *
15176223 TACTGATGGCTTTGTGCCGATCATAATACCAT
1 TACTGATGGCTTTGTGCCGATCAT-TTACCGT
* *
15176255 TGCTGATGGCTTTGTGCCGATCATTTCACTGT
1 TACTGATGGCTTTGTGCCGATCATTT-ACCGT
* * * * * *
15176287 TAGTGATGGCTGTGTGCCAATCATATCACTGC
1 TACTGATGGCTTTGTGCCGATCAT-TTACCGT
*
15176319 TACTGATGGCTTTGTGCCGGTCATGTTACCGT
1 TACTGATGGCTTTGTGCCGATCAT-TTACCGT
* * ** *
15176351 TATTGATGG-TTGTGTGCCGATCATATCATTGC
1 TACTGATGGCTT-TGTGCCGATCAT-TTACCGT
15176383 TACTGATGGCTTTGTGC
1 TACTGATGGCTTTGTGC
15176400 TAATCACATT
Statistics
Matches: 145, Mismatches: 27, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
31 3 0.02
32 139 0.96
33 3 0.02
ACGTcount: A:0.18, C:0.21, G:0.24, T:0.37
Consensus pattern (31 bp):
TACTGATGGCTTTGTGCCGATCATTTACCGT
Found at i:15176358 original size:96 final size:95
Alignment explanation
Indices: 15176223--15176425 Score: 246
Period size: 96 Copynumber: 2.1 Consensus size: 95
15176213 ATTGTACCAT
* * *
15176223 TACTGATGGCTTTGTGCCGATCATAATACCATTGCTGATGGCTT-TGTGCCGATCATTTCACTGT
1 TACTGATGGCTTTGTGCCGATCATAATACCATTACTGATGG-TTGTGTGCCGATCATATCACTGC
* *
15176287 TAGTGATGGCTGTGTGCCAATCATATCACTG
65 TACTGATGGCTGTGTGCCAATCACATCACTG
* ** * * *
15176318 CTACTGATGGCTTTGTGCCGGTCATGTTACCGTTATTGATGGTTGTGTGCCGATCATATCATTGC
1 -TACTGATGGCTTTGTGCCGATCATAATACCATTACTGATGGTTGTGTGCCGATCATATCACTGC
* * *
15176383 TACTGATGGCTTTGTGCTAATCACATTACTG
65 TACTGATGGCTGTGTGCCAATCACATCACTG
*
15176414 TACTTATGGCTT
1 TACTGATGGCTT
15176426 GTAGTCATTC
Statistics
Matches: 91, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
95 13 0.14
96 78 0.86
ACGTcount: A:0.19, C:0.20, G:0.23, T:0.38
Consensus pattern (95 bp):
TACTGATGGCTTTGTGCCGATCATAATACCATTACTGATGGTTGTGTGCCGATCATATCACTGCT
ACTGATGGCTGTGTGCCAATCACATCACTG
Found at i:15178277 original size:25 final size:25
Alignment explanation
Indices: 15178243--15178292 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
15178233 TAGGTAAATT
15178243 TCATCTAGATTAGAATTACATAGGG
1 TCATCTAGATTAGAATTACATAGGG
15178268 TCATCTAGATTAGAATTACATAGGG
1 TCATCTAGATTAGAATTACATAGGG
15178293 ATCAATCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (25 bp):
TCATCTAGATTAGAATTACATAGGG
Found at i:15181858 original size:6 final size:6
Alignment explanation
Indices: 15181847--15181882 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
15181837 CCGAAAGAAA
*
15181847 ATTTTC ATTTTC ATTTTC ATTTT- ATTTTT ATTTTC A
1 ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC A
15181883 ATAAGGGGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.19, C:0.11, G:0.00, T:0.69
Consensus pattern (6 bp):
ATTTTC
Found at i:15181879 original size:17 final size:18
Alignment explanation
Indices: 15181847--15181882 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
15181837 CCGAAAGAAA
15181847 ATTTTCATTTTCATTTTC
1 ATTTTCATTTTCATTTTC
*
15181865 ATTTT-ATTTTTATTTTC
1 ATTTTCATTTTCATTTTC
15181882 A
1 A
15181883 ATAAGGGGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.19, C:0.11, G:0.00, T:0.69
Consensus pattern (18 bp):
ATTTTCATTTTCATTTTC
Found at i:15199430 original size:64 final size:64
Alignment explanation
Indices: 15199349--15199468 Score: 177
Period size: 64 Copynumber: 1.9 Consensus size: 64
15199339 ACAAATATCG
** * * * *
15199349 GGACGCTCATTAAGAGCTACGGTATGTCTGTAATACATGCAGGATCAATACCGATCATATAACA
1 GGACGCTCACAAAGAGCTACGGTATGTCCGCAACACATGCAAGATCAATACCGATCATATAACA
*
15199413 GGACGCTCACAAAGAGCTGCGGTATGTCCGCAACACATGCAAGATCAATACCGATC
1 GGACGCTCACAAAGAGCTACGGTATGTCCGCAACACATGCAAGATCAATACCGATC
15199469 GGGATGCTAG
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
64 49 1.00
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.21
Consensus pattern (64 bp):
GGACGCTCACAAAGAGCTACGGTATGTCCGCAACACATGCAAGATCAATACCGATCATATAACA
Found at i:15208444 original size:2 final size:2
Alignment explanation
Indices: 15208437--15208465 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
15208427 TGTTCCTTCT
15208437 TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15208466 CATGATATCT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15211979 original size:24 final size:24
Alignment explanation
Indices: 15211952--15212036 Score: 68
Period size: 24 Copynumber: 3.5 Consensus size: 24
15211942 CTAGCGGACA
15211952 GAATAGTGGGCAGTATGTTGGGCC
1 GAATAGTGGGCAGTATGTTGGGCC
* * *
15211976 GAAT-GTAGGCTAGTCTCTTGGGCC
1 GAATAGTGGGC-AGTATGTTGGGCC
* * *
15212000 TG-CTAGTGGACAGTTTAG-TGGGCC
1 -GAATAGTGGGCAGTAT-GTTGGGCC
15212024 GAATAGTGGGCAG
1 GAATAGTGGGCAG
15212037 GCCAATGCTA
Statistics
Matches: 46, Mismatches: 10, Indels: 10
0.70 0.15 0.15
Matches are distributed among these distances:
23 6 0.13
24 35 0.76
25 5 0.11
ACGTcount: A:0.20, C:0.15, G:0.39, T:0.26
Consensus pattern (24 bp):
GAATAGTGGGCAGTATGTTGGGCC
Found at i:15219635 original size:8 final size:7
Alignment explanation
Indices: 15219610--15219657 Score: 57
Period size: 7 Copynumber: 7.0 Consensus size: 7
15219600 TTTGAGTCAA
15219610 AAAAATG
1 AAAAATG
15219617 -AAAATG
1 AAAAATG
15219623 AAAAATG
1 AAAAATG
15219630 ATAAAATG
1 A-AAAATG
15219638 -AAAATG
1 AAAAATG
15219644 AAAAA-G
1 AAAAATG
15219650 TAAAAATG
1 -AAAAATG
15219658 GAGAGGCTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
6 13 0.36
7 16 0.44
8 7 0.19
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.17
Consensus pattern (7 bp):
AAAAATG
Found at i:15220839 original size:45 final size:41
Alignment explanation
Indices: 15220761--15220871 Score: 105
Period size: 45 Copynumber: 2.6 Consensus size: 41
15220751 TGAAGCTACA
* * * *
15220761 AGTCTTATATCACTAAGGTTGCAGTAAAATAGACTGAAGATAG
1 AGTCTTATCTCCCTAAAGTTGCAGTAAAATAGAC-CAAGAT-G
* * * * *
15220804 CAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGACCACGATG
1 -AG-TCTTATCTCCCTAAAGTTGCAGTAAAATAGACCAAGATG
15220847 AGTCTTATCTCCCTAAAGTTGCAGT
1 AGTCTTATCTCCCTAAAGTTGCAGT
15220872 GGGGCAGGTT
Statistics
Matches: 56, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
41 21 0.38
42 2 0.04
43 1 0.02
44 6 0.11
45 26 0.46
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.30
Consensus pattern (41 bp):
AGTCTTATCTCCCTAAAGTTGCAGTAAAATAGACCAAGATG
Found at i:15232342 original size:2 final size:2
Alignment explanation
Indices: 15232335--15232391 Score: 114
Period size: 2 Copynumber: 28.5 Consensus size: 2
15232325 TCCTACTCTA
15232335 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
15232377 TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG T
15232392 TGTCTAACAT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:15240332 original size:127 final size:127
Alignment explanation
Indices: 15240106--15240352 Score: 431
Period size: 127 Copynumber: 1.9 Consensus size: 127
15240096 AAAATTAGTA
* * *
15240106 GAATAAATTGGGAAATTGAGCACACAAATTTAACGTGGAAAAACTCCTCCAAAGAGGATAAAAAA
1 GAATAAATTGAGAAATTGAACACACAAATTTAACGTGGAAAAACCCCTCCAAAGAGGATAAAAAA
* *
15240171 CTACGGGCAAAGATAATTTTACTATAATGGCAAAAGAAAGAAGAGTATAAAAGATGGAGGCG
66 CCACGGGCAAAGATAATTTTACTATAATGGCAAAAGAAAGAAGAGTACAAAAGATGGAGGCG
*
15240233 GAATAAATTGAGAAATTGAACACACAAATTTAACTTGGAAAAACCCCTCCAAAGAGGATAAAAAA
1 GAATAAATTGAGAAATTGAACACACAAATTTAACGTGGAAAAACCCCTCCAAAGAGGATAAAAAA
*
15240298 CCACGGGCAAAGATAATTTTACTATAATGGCAAAAGAACGAAGAGTACAAAAGAT
66 CCACGGGCAAAGATAATTTTACTATAATGGCAAAAGAAAGAAGAGTACAAAAGAT
15240353 AGAGATAAAA
Statistics
Matches: 113, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
127 113 1.00
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.19
Consensus pattern (127 bp):
GAATAAATTGAGAAATTGAACACACAAATTTAACGTGGAAAAACCCCTCCAAAGAGGATAAAAAA
CCACGGGCAAAGATAATTTTACTATAATGGCAAAAGAAAGAAGAGTACAAAAGATGGAGGCG
Found at i:15243190 original size:2 final size:2
Alignment explanation
Indices: 15243183--15243222 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
15243173 TGTATAAGTT
15243183 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15243223 AGTGTGCATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:15246211 original size:75 final size:73
Alignment explanation
Indices: 15246114--15246441 Score: 245
Period size: 75 Copynumber: 4.5 Consensus size: 73
15246104 CTGCAAAAGA
* * * *
15246114 GTTTACGCCCAGCGCTAATCGGATAAATCGACGATATTAAATGTGAGCCCAACTCCACTTGGATA
1 GTTTGCGCCCAACGCTAGTCGGATAAA-CGACGATA-TAAATGTGAGCCCAACTCCAGTTGGATA
15246179 AACCAACGAT
64 AACCAACGAT
* * * * *
15246189 GTTTGCGCCCAACGCTAGTCGGATACACTGATGATATTAAATGTAAGCCCAGCTCTAGTTGGATA
1 GTTTGCGCCCAACGCTAGTCGGATAAAC-GACGATA-TAAATGTGAGCCCAACTCCAGTTGGATA
15246254 AACCAACGAT
64 AACCAACGAT
* ** * * * * ***
15246264 GTTTGCGCTCAGTGCTAATCGGATAAAC--CG--ATGAATGTGTGCCCAACACCAGTCAAATAAA
1 GTTTGCGCCCAACGCTAGTCGGATAAACGACGATATAAATGTGAGCCCAACTCCAGTTGGATAAA
* *
15246325 CTGATA-GAA
66 C-CA-ACGAT
* * * * * *
15246334 G-TTACACCCAACGCTAGTCGGATAAATTGACGAGATAAATAGTGAGCCCAGCTCTAGTTGGATA
1 GTTTGCGCCCAACGCTAGTCGGATAAA-CGACGATATAAAT-GTGAGCCCAACTCCAGTTGGATA
**
15246398 AACCAATAAT
64 AACCAACGAT
** *
15246408 GTTTGCGCCCAACATTAGTCGAATAAACCGACGA
1 GTTTGCGCCCAACGCTAGTCGGATAAA-CGACGA
15246442 ATGTGTAATT
Statistics
Matches: 191, Mismatches: 51, Indels: 22
0.72 0.19 0.08
Matches are distributed among these distances:
69 41 0.21
70 5 0.03
71 1 0.01
72 3 0.02
73 1 0.01
74 9 0.05
75 131 0.69
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (73 bp):
GTTTGCGCCCAACGCTAGTCGGATAAACGACGATATAAATGTGAGCCCAACTCCAGTTGGATAAA
CCAACGAT
Found at i:15249824 original size:40 final size:39
Alignment explanation
Indices: 15249750--15249948 Score: 211
Period size: 40 Copynumber: 5.0 Consensus size: 39
15249740 TACAATTTAC
* * *
15249750 TTCAGGGTTACCAAAGTATAAA-TAGGGCACGTATGTGTA
1 TTCAGGG-TACCAAAGTACAAACAAGGGCACGTATGTGCA
* * * * *
15249789 TTTAGGAGTACCGAAGTATAAACAGGGGCATGTATGTGCA
1 TTCAGG-GTACCAAAGTACAAACAAGGGCACGTATGTGCA
* * *
15249829 TTCAGGCGAACCAAAGTACAAACAAGGGCACATATGTGAA
1 TTCAGG-GTACCAAAGTACAAACAAGGGCACGTATGTGCA
* * *
15249869 TTCAAGGGTATCAAAGTACAAACAGGGGTACGTATGTGCA
1 TTC-AGGGTACCAAAGTACAAACAAGGGCACGTATGTGCA
*
15249909 TTCAGGGGTACCGAAGTACAAACAAGGGCACGTATGTGCA
1 TTCA-GGGTACCAAAGTACAAACAAGGGCACGTATGTGCA
15249949 ATCATCAATA
Statistics
Matches: 131, Mismatches: 25, Indels: 7
0.80 0.15 0.04
Matches are distributed among these distances:
39 19 0.15
40 109 0.83
41 3 0.02
ACGTcount: A:0.35, C:0.16, G:0.27, T:0.22
Consensus pattern (39 bp):
TTCAGGGTACCAAAGTACAAACAAGGGCACGTATGTGCA
Found at i:15249865 original size:80 final size:80
Alignment explanation
Indices: 15249759--15249946 Score: 236
Period size: 80 Copynumber: 2.4 Consensus size: 80
15249749 CTTCAGGGTT
* * * * * * *
15249759 ACCAAAGTATAAA-TAGGGCACGTATGTGTATT-TAGGAGTACCGAAGTATAAACAGGGGCATGT
1 ACCAAAGTACAAACAAGGGCACGTATGTGAATTCAAGG-GTACCAAAGTACAAACAGGGGCACGT
15249822 ATGTGCATTCAGGCGA
65 ATGTGCATTCAGGCGA
* * *
15249838 ACCAAAGTACAAACAAGGGCACATATGTGAATTCAAGGGTATCAAAGTACAAACAGGGGTACGTA
1 ACCAAAGTACAAACAAGGGCACGTATGTGAATTCAAGGGTACCAAAGTACAAACAGGGGCACGTA
* *
15249903 TGTGCATTCAGGGGT
66 TGTGCATTCAGGCGA
*
15249918 ACCGAAGTACAAACAAGGGCACGTATGTG
1 ACCAAAGTACAAACAAGGGCACGTATGTG
15249947 CAATCATCAA
Statistics
Matches: 93, Mismatches: 14, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
79 12 0.13
80 78 0.84
81 3 0.03
ACGTcount: A:0.36, C:0.16, G:0.27, T:0.21
Consensus pattern (80 bp):
ACCAAAGTACAAACAAGGGCACGTATGTGAATTCAAGGGTACCAAAGTACAAACAGGGGCACGTA
TGTGCATTCAGGCGA
Found at i:15256389 original size:40 final size:40
Alignment explanation
Indices: 15256342--15256555 Score: 263
Period size: 40 Copynumber: 5.4 Consensus size: 40
15256332 AGTATAAATA
* *
15256342 GGGCACGTATGTGTATTCTGGGGTACCGAAGTACAAATC-G
1 GGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAA-CAG
* * *
15256382 GGACACGTATGTACATTCAGGGGTACCGAAGTACAAACAA
1 GGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAACAG
* * *
15256422 GGGCATGTATGTG-ATATTAGGGG-ACCAAAGTACAAACAG
1 GGGCACGTATGTGCAT-TCAGGGGTACCGAAGTACAAACAG
* * *
15256461 GGGCATGTATGTGCATTCAAGGGTACCGAAGTACAAACCG
1 GGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAACAG
* * *
15256501 GGGCACTTATGTGCATTCAGGAGTACTGAAGTACAAACAG
1 GGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAACAG
15256541 GGGCACGTATGTGCA
1 GGGCACGTATGTGCA
15256556 ATCATCACTA
Statistics
Matches: 148, Mismatches: 22, Indels: 8
0.83 0.12 0.04
Matches are distributed among these distances:
39 35 0.24
40 113 0.76
ACGTcount: A:0.31, C:0.18, G:0.30, T:0.21
Consensus pattern (40 bp):
GGGCACGTATGTGCATTCAGGGGTACCGAAGTACAAACAG
Found at i:15256453 original size:79 final size:80
Alignment explanation
Indices: 15256317--15256552 Score: 255
Period size: 79 Copynumber: 3.0 Consensus size: 80
15256307 ATACTATTTA
* * * * * *
15256317 ATTCAAGGTTACCAAAGTATAAA-TAGGGCACGTATGTGTATTCTGGGGTACCGAAGTACAAATC
1 ATTCAAGGGTACCGAAGTACAAACAAGGGCACGTATGTGTATTCAGGGGTACCAAAGTACAAA-C
15256381 -GGGACACGTATGTAC
65 AGGGACACGTATGTAC
* *
15256396 ATTCAGGGGTACCGAAGTACAAACAAGGGCATGTATGTGATATT-AGGGG-ACCAAAGTACAAAC
1 ATTCAAGGGTACCGAAGTACAAACAAGGGCACGTATGTG-TATTCAGGGGTACCAAAGTACAAAC
* * *
15256459 AGGGGCATGTATGTGC
65 AGGGACACGTATGTAC
** * * * **
15256475 ATTCAAGGGTACCGAAGTACAAACCGGGGCACTTATGTGCATTCAGGAGTACTGAAGTACAAACA
1 ATTCAAGGGTACCGAAGTACAAACAAGGGCACGTATGTGTATTCAGGGGTACCAAAGTACAAACA
*
15256540 GGGGCACGTATGT
66 GGGACACGTATGT
15256553 GCAATCATCA
Statistics
Matches: 131, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
78 4 0.03
79 81 0.62
80 42 0.32
81 4 0.03
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (80 bp):
ATTCAAGGGTACCGAAGTACAAACAAGGGCACGTATGTGTATTCAGGGGTACCAAAGTACAAACA
GGGACACGTATGTAC
Found at i:15256459 original size:39 final size:41
Alignment explanation
Indices: 15256317--15256553 Score: 195
Period size: 40 Copynumber: 6.0 Consensus size: 41
15256307 ATACTATTTA
* * * *
15256317 ATTCAAGGTTACCAAAGTATAAA-TAGGGCACGTATGTG-T
1 ATTCAGGGGTACCAAAGTACAAACAAGGGCACGTATGTGAT
* * *
15256356 ATTCTGGGGTACCGAAGTACAAATC--GGGACACGTATGT-AC
1 ATTCAGGGGTACCAAAGTACAAA-CAAGGG-CACGTATGTGAT
* *
15256396 ATTCAGGGGTACCGAAGTACAAACAAGGGCATGTATGTGAT
1 ATTCAGGGGTACCAAAGTACAAACAAGGGCACGTATGTGAT
* * *
15256437 ATT-AGGGG-ACCAAAGTACAAACAGGGGCATGTATGTG-C
1 ATTCAGGGGTACCAAAGTACAAACAAGGGCACGTATGTGAT
* * ** * *
15256475 ATTCAAGGGTACCGAAGTACAAACCGGGGCACTTATGTG-C
1 ATTCAGGGGTACCAAAGTACAAACAAGGGCACGTATGTGAT
* ** *
15256515 ATTCAGGAGTACTGAAGTACAAACAGGGGCACGTATGTG
1 ATTCAGGGGTACCAAAGTACAAACAAGGGCACGTATGTG
15256554 CAATCATCAC
Statistics
Matches: 167, Mismatches: 22, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
38 3 0.02
39 53 0.32
40 104 0.62
41 7 0.04
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (41 bp):
ATTCAGGGGTACCAAAGTACAAACAAGGGCACGTATGTGAT
Found at i:15256497 original size:119 final size:118
Alignment explanation
Indices: 15256327--15256553 Score: 319
Period size: 119 Copynumber: 1.9 Consensus size: 118
15256317 ATTCAAGGTT
* * * ** *
15256327 ACCAAAGTATAAATAGGGCACGTATGTGTATTCTGGGGTACCGAAGTACAAATCGGGACACGTAT
1 ACCAAAGTACAAACAGGGCACGTATGTGCATTCAAGGGTACCGAAGTACAAACCGGGACACGTAT
* *
15256392 GTACATTCAGGGGTACCGAAGTACAAACAAGGGCATGTATGTGATATTAGGGG
66 GTACATTCAGGAGTACCGAAGTACAAACAAGGGCACGTATGTGATATTAGGGG
* * *
15256445 ACCAAAGTACAAACAGGGGCATGTATGTGCATTCAAGGGTACCGAAGTACAAACCGGGGCACTTA
1 ACCAAAGTACAAACA-GGGCACGTATGTGCATTCAAGGGTACCGAAGTACAAACCGGGACACGTA
* * *
15256510 TGTGCATTCAGGAGTACTGAAGTACAAACAGGGGCACGTATGTG
65 TGTACATTCAGGAGTACCGAAGTACAAACAAGGGCACGTATGTG
15256554 CAATCATCAC
Statistics
Matches: 94, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
118 13 0.14
119 81 0.86
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (118 bp):
ACCAAAGTACAAACAGGGCACGTATGTGCATTCAAGGGTACCGAAGTACAAACCGGGACACGTAT
GTACATTCAGGAGTACCGAAGTACAAACAAGGGCACGTATGTGATATTAGGGG
Found at i:15258832 original size:42 final size:42
Alignment explanation
Indices: 15258754--15258934 Score: 141
Period size: 42 Copynumber: 4.3 Consensus size: 42
15258744 TAACAAGCAT
* * * *
15258754 AGTGCATCATCAGATAGACCG-AAGAAATCATGTTGGCATATA
1 AGTGCATCATCGGATATACCGAAACAAAT-ATATTGGCATATA
* ** * *
15258796 AGTGCATCATCGGATGTATTGAAGCAAATATATTGGCATGTA
1 AGTGCATCATCGGATATACCGAAACAAATATATTGGCATATA
* ** * * *
15258838 AGTGCATCATCGAATATACCGAAACAGTTATACTAGCACATA
1 AGTGCATCATCGGATATACCGAAACAAATATATTGGCATATA
* * * **
15258880 AGTGCATCATCGGATAAACC-AAATCAAATATACTGACACGTA
1 AGTGCATCATCGGATATACCGAAA-CAAATATATTGGCATATA
*
15258922 AGTGTATCATCGG
1 AGTGCATCATCGG
15258935 CTAAATTGAA
Statistics
Matches: 109, Mismatches: 28, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
41 3 0.03
42 101 0.93
43 5 0.05
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (42 bp):
AGTGCATCATCGGATATACCGAAACAAATATATTGGCATATA
Found at i:15261214 original size:23 final size:22
Alignment explanation
Indices: 15261166--15261215 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
15261156 AAAATCATAA
*
15261166 CTAAT-ATTAGTTAAAATATGC
1 CTAATAATTAGTTAAAACATGC
* *
15261187 ATAATAATTATTTAAAAGCATGC
1 CTAATAATTAGTTAAAA-CATGC
15261210 CTAATA
1 CTAATA
15261216 TAATATTATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 4 0.17
22 10 0.43
23 9 0.39
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.36
Consensus pattern (22 bp):
CTAATAATTAGTTAAAACATGC
Found at i:15262369 original size:119 final size:121
Alignment explanation
Indices: 15262112--15262350 Score: 279
Period size: 119 Copynumber: 2.0 Consensus size: 121
15262102 ATATTTAAAG
** * *
15262112 TTAGAATAAGCCAACATTTATATAAATTGATTACGAGTGTTTCTTTTTAAATTAATATTATATTA
1 TTAGAATAAATCAACATATATATAAATTGATTACGAGTGTTTCTTTTTAAATTAATATTATACTA
* * * *
15262177 GGTATGATTTTATTAACAAGAAATCAGAAAAAATTTATTACTTCCTTATTAATTGA
66 GGCATGATTTTAATAACAAGAAATCAGAAAAAAATTATTACTTCATTATTAATTGA
* * * * *
15262233 TTAGAATAAGTCAACATATATATGAAA-TGATTATGGGTG-TTCTTTTT-ATTTAATATTTTACT
1 TTAGAATAAATCAACATATATAT-AAATTGATTACGAGTGTTTCTTTTTAAATTAATATTATACT
* * *
15262295 AGGCATGATTTTAATAACAATAAATCATAAAAATAATTATT-CTTTATTAATTAATT
65 AGGCATGATTTTAATAACAAGAAATCAGAAAAA-AATTATTACTTCATT-ATTAATT
15262351 TTATTGACTA
Statistics
Matches: 101, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
119 46 0.46
120 21 0.21
121 31 0.31
122 3 0.03
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.43
Consensus pattern (121 bp):
TTAGAATAAATCAACATATATATAAATTGATTACGAGTGTTTCTTTTTAAATTAATATTATACTA
GGCATGATTTTAATAACAAGAAATCAGAAAAAAATTATTACTTCATTATTAATTGA
Found at i:15272276 original size:24 final size:22
Alignment explanation
Indices: 15272240--15272287 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
15272230 TAACATTCTC
15272240 AATATTTTGAAAATATTTTAAATT
1 AATATTTTG-AAA-ATTTTAAATT
15272264 AATATGTTT-AAAATTTTAAATT
1 AATAT-TTTGAAAATTTTAAATT
15272286 AA
1 AA
15272288 ATTATTCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 12 0.52
23 3 0.13
24 5 0.22
25 3 0.13
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (22 bp):
AATATTTTGAAAATTTTAAATT
Found at i:15281051 original size:11 final size:11
Alignment explanation
Indices: 15280976--15281052 Score: 63
Period size: 11 Copynumber: 6.9 Consensus size: 11
15280966 AAACTAATCC
15280976 TCTCTCAAATTT
1 TCTCTCAAA-TT
*
15280988 TTTCTC-AATT
1 TCTCTCAAATT
15280998 TC-CTCTAAATT
1 TCTCTC-AAATT
15281009 TCCTCTC-AATT
1 T-CTCTCAAATT
15281020 TGCTCTCAAATT
1 T-CTCTCAAATT
*
15281032 CCT-TCCAAATT
1 TCTCT-CAAATT
15281043 TCTCTCAAAT
1 TCTCTCAAAT
15281053 CTATATTTAA
Statistics
Matches: 53, Mismatches: 5, Indels: 15
0.73 0.07 0.21
Matches are distributed among these distances:
9 3 0.06
10 4 0.08
11 32 0.60
12 11 0.21
13 3 0.06
ACGTcount: A:0.25, C:0.29, G:0.01, T:0.45
Consensus pattern (11 bp):
TCTCTCAAATT
Found at i:15281111 original size:51 final size:51
Alignment explanation
Indices: 15281012--15281111 Score: 139
Period size: 51 Copynumber: 2.0 Consensus size: 51
15281002 CTAAATTTCC
*
15281012 TCTCAATTTGCTCTCAAATTCCTTCCAAATTTCTCTCAAATCTATATTTAA
1 TCTCAATTTGCTCTCAAATTCCTTCCAAATTTCTCTCAAATCCATATTTAA
* * * *
15281063 TCTCAATTTGCTCTCAAGTTCC-TCTTAAATTTCTCTTAAATCCCTATTT
1 TCTCAATTTGCTCTCAAATTCCTTC-CAAATTTCTCTCAAATCCATATTT
15281112 TTAAATAATT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
50 2 0.05
51 41 0.95
ACGTcount: A:0.26, C:0.26, G:0.03, T:0.45
Consensus pattern (51 bp):
TCTCAATTTGCTCTCAAATTCCTTCCAAATTTCTCTCAAATCCATATTTAA
Found at i:15282264 original size:7 final size:7
Alignment explanation
Indices: 15282252--15282277 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
15282242 TAGTCGATTG
15282252 GTATTTA
1 GTATTTA
15282259 GTATTTA
1 GTATTTA
15282266 GTATTTA
1 GTATTTA
15282273 GTATT
1 GTATT
15282278 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:15282955 original size:18 final size:18
Alignment explanation
Indices: 15282928--15282967 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
15282918 CAGGTGCGTT
* *
15282928 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
*
15282946 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
15282964 TCCT
1 TCCT
15282968 TTTCCGAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.30, G:0.07, T:0.45
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:15283533 original size:22 final size:22
Alignment explanation
Indices: 15283508--15284037 Score: 555
Period size: 22 Copynumber: 24.3 Consensus size: 22
15283498 TTTAATTGAC
* *
15283508 AACCTTAAACCCTTAACCTAAA
1 AACCCTAAACCCTTAACTTAAA
15283530 AACCCTAACCCTAACCCTTAACTT-AA
1 AACCCT-A----AACCCTTAACTTAAA
* *
15283556 AACACC--AACCCTTAAATTCAA
1 AAC-CCTAAACCCTTAACTTAAA
*
15283577 AACCTTAAACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAA
* *
15283599 AACCATAAACCCTTAACCTAAA
1 AACCCTAAACCCTTAACTTAAA
15283621 AACCCT-AACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAA
* * *
15283642 AACTCTAAACTCTTAACCTAAA
1 AACCCTAAACCCTTAACTTAAA
*
15283664 AACCCTAAACCCTTAACCTAAA
1 AACCCTAAACCCTTAACTTAAA
*
15283686 AACCCTAAACCCTTAAATTAAA
1 AACCCTAAACCCTTAACTTAAA
*
15283708 AACCATAAACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAA
* * *
15283730 AATCTTAAA-CCTTAAATT-AA
1 AACCCTAAACCCTTAACTTAAA
15283750 AACCCT-AACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAA
* * *
15283771 AATCCTAAAACCTTAAATTAAA
1 AACCCTAAACCCTTAACTTAAA
* *
15283793 AACCCTAAACCCTAAAACTTTAA
1 AACCCTAAACCCT-TAACTTAAA
* *
15283816 AACTCTAAACCCTTAAATT-AA
1 AACCCTAAACCCTTAACTTAAA
*
15283837 AACCCTAAACTCTTAACTT-AA
1 AACCCTAAACCCTTAACTTAAA
* * *
15283858 AACCAT-AACTCTTAACTTTAA
1 AACCCTAAACCCTTAACTTAAA
*
15283879 AACCCTAAACCCTTACCTTAAA
1 AACCCTAAACCCTTAACTTAAA
* * *
15283901 AATCGT-AACCCTTAAATTAAA
1 AACCCTAAACCCTTAACTTAAA
* **
15283922 AACCCTAAACCTTTAACTTTTA
1 AACCCTAAACCCTTAACTTAAA
*
15283944 AACCATAAACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAA
*
15283966 AA-CCTTAACCCTTTAACTTAAA
1 AACCCTAAACCC-TTAACTTAAA
*
15283988 AATCCT-AACCCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAA
*
15284009 AACCCTAAACCCTTAAATTAAA
1 AACCCTAAACCCTTAACTTAAA
15284031 AACCCTA
1 AACCCTA
15284038 TCCTTGTTGG
Statistics
Matches: 426, Mismatches: 62, Indels: 40
0.81 0.12 0.08
Matches are distributed among these distances:
19 2 0.00
20 38 0.09
21 110 0.26
22 236 0.55
23 22 0.05
26 5 0.01
27 13 0.03
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.25
Consensus pattern (22 bp):
AACCCTAAACCCTTAACTTAAA
Found at i:15283632 original size:43 final size:43
Alignment explanation
Indices: 15283508--15284034 Score: 547
Period size: 43 Copynumber: 12.1 Consensus size: 43
15283498 TTTAATTGAC
*
15283508 AACCTTAAACCCTTAACCTAAAAACCCTAACCCTAACCCTTAACTTAAA
1 AACC-TAAACCCTTAACTTAAAAACCCT-A----AACCCTTAACTTAAA
* * *
15283557 ACACC--AACCCTTAAATTCAAAACCTTAAACCCTTAACTTAAA
1 A-ACCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
*
15283599 AACCATAAACCCTTAACCTAAAAACCCT-AACCCTTAACTTAAA
1 AACC-TAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * *
15283642 AACTCTAAACTCTTAACCTAAAAACCCTAAACCCTTAACCTAAA
1 AAC-CTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* *
15283686 AACCCTAAACCCTTAAATTAAAAACCATAAACCCTTAACTTAAA
1 AA-CCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* *
15283730 AATCTTAAA-CCTTAAATT-AAAACCCT-AACCCTTAACTTAAA
1 AA-CCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * * *
15283771 AATCCTAAAACCTTAAATTAAAAACCCTAAACCCTAAAACTTTAA
1 AA-CCTAAACCCTTAACTTAAAAACCCTAAACCCT-TAACTTAAA
* *
15283816 AACTCTAAACCCTTAAATT-AAAACCCTAAACTCTTAACTT-AA
1 AAC-CTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * *
15283858 AACC-ATAACTCTTAACTTTAAAACCCTAAACCCTTACCTTAAA
1 AACCTA-AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * * **
15283901 AATCGT-AACCCTTAAATTAAAAACCCTAAACCTTTAACTTTTA
1 AA-CCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
*
15283944 AACCATAAACCCTTAACTTAAAAA-CCTTAACCCTTTAACTTAAA
1 AACC-TAAACCCTTAACTTAAAAACCCTAAACCC-TTAACTTAAA
*
15283988 AATCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAAATTAAA
1 AA-CCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
15284031 AACC
1 AACC
15284035 CTATCCTTGT
Statistics
Matches: 412, Mismatches: 44, Indels: 51
0.81 0.09 0.10
Matches are distributed among these distances:
40 1 0.00
41 37 0.09
42 59 0.14
43 134 0.33
44 133 0.32
45 26 0.06
46 1 0.00
47 17 0.04
49 1 0.00
50 3 0.01
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.25
Consensus pattern (43 bp):
AACCTAAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
Done.