Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 ID=Chr13-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58321163
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 747533 characters in sequence are not A, C, G, or T
File 61 of 199
Found at i:18289075 original size:44 final size:42
Alignment explanation
Indices: 18288969--18289221 Score: 161
Period size: 44 Copynumber: 5.9 Consensus size: 42
18288959 GAAGATGGCA
18288969 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACAT
* * *
18289011 AATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTA-AT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA--ACAT
* * ** *** *
18289054 AGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCA-
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACAT
** * * * *
18289096 GGTCTTATCTCCTTGAGGTTGCAGTGGGGCAGACTTAAGTAGCA-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAA--AACAT
* * * ***
18289140 AATCTTATCTCCTTGAGGTTGCAGTGGAGCATATTGAATTTGAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AA-AACAT
* * * * *
18289184 GATCCTATCTCCCTGAAGTTGTAGTGGACCGGATTAAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
18289222 TTATGAGATA
Statistics
Matches: 161, Mismatches: 41, Indels: 18
0.73 0.19 0.08
Matches are distributed among these distances:
41 24 0.15
42 36 0.22
43 10 0.06
44 91 0.57
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (42 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACAT
Found at i:18289200 original size:129 final size:127
Alignment explanation
Indices: 18288971--18289204 Score: 283
Period size: 129 Copynumber: 1.8 Consensus size: 127
18288961 AGATGGCAAA
*
18288971 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACATAATCCTATCTCCCTGAAGTTGTAGT
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACATAATCCTATCTCCCTGAAGTTGCAGT
* * *
18289036 GGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
66 GGAGCAGATTAAAGTAATAGATCCTATCTCCCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
* * * * * * *
18289098 TCTTATCTCCTTGAGGTTGCAGTGGGGCAGACTTAAGTAGCA-AATCTTATCTCCTTGAGGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAA--AACATAATCCTATCTCCCTGAAGTTGC
* ** *
18289162 AGTGGAGCATATTGAATTTGAT-GATCCTATCTCCCTGAAGTTG
63 AGTGGAGCAGATT-AAAGTAATAGATCCTATCTCCCTGAAGTTG
18289205 TAGTGGACCG
Statistics
Matches: 88, Mismatches: 15, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
127 28 0.32
128 4 0.05
129 48 0.55
130 8 0.09
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (127 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACATAATCCTATCTCCCTGAAGTTGCAGT
GGAGCAGATTAAAGTAATAGATCCTATCTCCCTGAAGTTGCAGTAGAGTGGATCGCATCAGG
Found at i:18296161 original size:15 final size:16
Alignment explanation
Indices: 18296141--18296170 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
18296131 TAGTGCCTTG
18296141 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
18296156 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
18296171 AAGCATGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:18308196 original size:9 final size:9
Alignment explanation
Indices: 18308182--18308206 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
18308172 GATCAAGTAA
18308182 AATTAAATT
1 AATTAAATT
18308191 AATTAAATT
1 AATTAAATT
18308200 AATTAAA
1 AATTAAA
18308207 ACTAATATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
AATTAAATT
Found at i:18311967 original size:21 final size:21
Alignment explanation
Indices: 18311938--18311979 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
18311928 TCAATAAAGG
18311938 GATTACTATTCATAGAAATCA
1 GATTACTATTCATAGAAATCA
*
18311959 GATTGCTATTCATAGAAATCA
1 GATTACTATTCATAGAAATCA
18311980 TTCTTTAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.33
Consensus pattern (21 bp):
GATTACTATTCATAGAAATCA
Found at i:18315617 original size:31 final size:31
Alignment explanation
Indices: 18315565--18315626 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 31
18315555 ATATTTGTGC
18315565 CTTAAATTGAAAATGCTTTTTA-TATAGGGGG
1 CTTAAATTGAAAATGCTTTTTATTA-AGGGGG
18315596 CTTAAATTGAAAATGAC-TTTTATTAAGGGGG
1 CTTAAATTGAAAATG-CTTTTTATTAAGGGGG
18315627 AGCAATCTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
31 26 0.90
32 3 0.10
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (31 bp):
CTTAAATTGAAAATGCTTTTTATTAAGGGGG
Found at i:18323943 original size:25 final size:25
Alignment explanation
Indices: 18323864--18323943 Score: 60
Period size: 25 Copynumber: 3.3 Consensus size: 25
18323854 GGCTCTTTGT
* *
18323864 GAGCTTCTTGAT-TAATGGCTCTCCA
1 GAGCTTCTCGATAT-ATGGCTATCCA
**
18323889 GAGCTTCTCG--ATATGGCTCA-CTT
1 GAGCTTCTCGATATATGGCT-ATCCA
* *
18323912 GAACTTCTCGATATATGGCTATCCG
1 GAGCTTCTCGATATATGGCTATCCA
18323937 GAGCTTC
1 GAGCTTC
18323944 CCGTTAATGG
Statistics
Matches: 42, Mismatches: 8, Indels: 10
0.70 0.13 0.17
Matches are distributed among these distances:
23 16 0.38
24 2 0.05
25 24 0.57
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (25 bp):
GAGCTTCTCGATATATGGCTATCCA
Found at i:18324000 original size:72 final size:72
Alignment explanation
Indices: 18323875--18324021 Score: 165
Period size: 72 Copynumber: 2.0 Consensus size: 72
18323865 AGCTTCTTGA
* * * * *
18323875 TTAATGGCTCTCCAGAGCTTCTCGATATGGCTCACTTGAACTTCTCGATATATGGCT-ATCCGGA
1 TTAATGGCTCTCCAAAGCTACTCGATATAGCTCACATGAACTTCTCGATATATGGCTCAT-AGGA
18323939 GCTTCCCG
65 GCTTCCCG
* * * *
18323947 TTAATGGCTCTTCAAAGCTACTCGTTATAAGCTCACATGAGCTTC-CTGA-ATATGGCTCATATG
1 TTAATGGCTCTCCAAAGCTACTCGATAT-AGCTCACATGAACTTCTC-GATATATGGCTCATAGG
18324010 AGCTTCCCG
64 AGCTTCCCG
18324019 TTA
1 TTA
18324022 TAGCCTGAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
72 46 0.73
73 17 0.27
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.33
Consensus pattern (72 bp):
TTAATGGCTCTCCAAAGCTACTCGATATAGCTCACATGAACTTCTCGATATATGGCTCATAGGAG
CTTCCCG
Found at i:18325834 original size:10 final size:10
Alignment explanation
Indices: 18325819--18325853 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
18325809 TTATAAGTAA
18325819 ATGTGATTAT
1 ATGTGATTAT
18325829 ATGTGATTAT
1 ATGTGATTAT
*
18325839 TTGTGATTAT
1 ATGTGATTAT
18325849 ATGTG
1 ATGTG
18325854 GTTAATGCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (10 bp):
ATGTGATTAT
Found at i:18331093 original size:24 final size:25
Alignment explanation
Indices: 18331030--18331106 Score: 74
Period size: 24 Copynumber: 3.2 Consensus size: 25
18331020 CTCAATATTA
* **
18331030 TTTAAAATTTATTAT-TAACATTG-
1 TTTAAGATTTATTATATATTATTGT
*
18331053 TTTAA-ATTTATTGTATATTATTGT
1 TTTAAGATTTATTATATATTATTGT
18331077 TTTAAGATTTA-TATATATTATT-T
1 TTTAAGATTTATTATATATTATTGT
18331100 TTCTAAG
1 TT-TAAG
18331107 TTTCCCCTGC
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
22 8 0.17
23 14 0.30
24 19 0.41
25 5 0.11
ACGTcount: A:0.34, C:0.03, G:0.06, T:0.57
Consensus pattern (25 bp):
TTTAAGATTTATTATATATTATTGT
Found at i:18333289 original size:23 final size:22
Alignment explanation
Indices: 18333263--18333321 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 22
18333253 AATAAAATGA
*
18333263 AAAAAGAAAAATGATGAAAAAAG
1 AAAAAGAAAAA-GAAGAAAAAAG
18333286 AAAATA-AAAAGAGAAGAAAAAAG
1 AAAA-AGAAAA-AGAAGAAAAAAG
18333309 -AAAAGAAAAAGAA
1 AAAAAGAAAAAGAA
18333322 AAAGGAGAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
21 5 0.16
22 7 0.22
23 18 0.56
24 2 0.06
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.05
Consensus pattern (22 bp):
AAAAAGAAAAAGAAGAAAAAAG
Found at i:18333325 original size:12 final size:11
Alignment explanation
Indices: 18333280--18333323 Score: 61
Period size: 11 Copynumber: 3.9 Consensus size: 11
18333270 AAAATGATGA
*
18333280 AAAAAGAAAAT
1 AAAAAGAAAAG
*
18333291 AAAAAGAGAAG
1 AAAAAGAAAAG
18333302 AAAAAAGAAAAG
1 -AAAAAGAAAAG
18333314 AAAAAGAAAA
1 AAAAAGAAAA
18333324 AGGAGAGGCC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
11 19 0.66
12 10 0.34
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:18334353 original size:44 final size:46
Alignment explanation
Indices: 18334282--18334406 Score: 130
Period size: 48 Copynumber: 2.7 Consensus size: 46
18334272 AAAGAGAAGG
* * * *
18334282 GACCAAGGTGAAAA-ATCGCAAATGGCGCTTTGAGTCC-T-AAAAAA
1 GACCAAGGTGAAAACCT-GCAAAGGGCGCCTTGAATCCTTAAAAAAA
* *
18334326 GACTAAGGTGAAAACCTTCAAAGGGCGCCTTGAATCCTTCAAAAAAAA
1 GACCAAGGTGAAAACCTGCAAAGGGCGCCTTGAATCCTT--AAAAAAA
* *
18334374 GACCAAGGTGAAAACCTGCAGAGGGCGTCTTGA
1 GACCAAGGTGAAAACCTGCAAAGGGCGCCTTGA
18334407 GACCAAAGGG
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
44 29 0.44
45 2 0.03
48 35 0.53
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.18
Consensus pattern (46 bp):
GACCAAGGTGAAAACCTGCAAAGGGCGCCTTGAATCCTTAAAAAAA
Found at i:18335291 original size:24 final size:24
Alignment explanation
Indices: 18335259--18335314 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
18335249 GTCCCAAAAG
18335259 TACAGTGGATTGAACCTTGAAGAT
1 TACAGTGGATTGAACCTTGAAGAT
*
18335283 TACAGTGGATTGCACCTTGAAGAT
1 TACAGTGGATTGAACCTTGAAGAT
18335307 TACAGTGG
1 TACAGTGG
18335315 GGGCAATCCG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (24 bp):
TACAGTGGATTGAACCTTGAAGAT
Found at i:18335701 original size:45 final size:45
Alignment explanation
Indices: 18335592--18336389 Score: 263
Period size: 44 Copynumber: 17.9 Consensus size: 45
18335582 GGTGAAACCA
* * * * **
18335592 CAAATCCTATCTCCATGAAGTTGCAGTGGAGC-GAATTAAAGTTA-
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG-ACTGAAGAAAG
** *
18335636 CAGCTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGAAAG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAG
** * * **
18335681 CACGTCTTATCCCCCTGAAGTTGCAGTGGAGCTGACTGAAGATGG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAG
* * * *
18335726 CAAATCTTATCTCTCTAAAGTTGCAGTGGAGCAGA-TTACAGCCAA-
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGA-AG-AAAG
* * * * *
18335771 -TAATCCTATCTCCCTGAAGTTGCAGGGGAGCAGATTGAAGACA-
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAG
** * * ** * * *
18335814 TTAGTCTTATCTCCCTAAAGTTGCAGTGGAATAGATTAAAGCTATAAAT
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG----AAAG
* * * ** **
18335863 CACAGATCTTATCTCTCTAAAGTTGCAGT--AG-AG-TTGATCATGG
1 CA-A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAG
* * * *
18335906 CAAATCTTAT-TTCCTCGAAGTTGCAGTGGAGTAGA-T-TA-AAAC
1 CAAATCTTATCTCCCT-GAAGTTGCAGTGGAGCAGACTGAAGAAAG
* * *
18335948 CAATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG--TG
1 C-A-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAG
* * * *
18335993 -AAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACT-AATCATAG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAA-GAAAG
* * * * * * * * *
18336037 CGAATCTTATTTCCCTGAAGTTGCGGTAGAACAGATTAAAACTATAAAT
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT--GA--AGAAAG
* * * * * *
18336086 CACAGATCTTATCACTCTGAAGTTGCAGTAGAGTAGA-TCATG---G
1 CA-A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAG
* * * * *
18336129 CAAATCTTATCTCCTTGAAGTTGTAGTGGAGTAGA-TCACAGCCAA-
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGA-AG-AAAG
* * * * * *
18336174 -TAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTGAAGACA-
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAG
* * * *
18336217 CTAGTCCTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAG
*** ** ** * * *
18336262 CGGGTCTTATCTTTCTGAAGTTGCAGTAAAGCA-AAT-CA-TAA-
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAG
* * * * * **
18336303 TAAGTCTTATCCCCCTGAACTTGCAGTGGGGCAGACTGAAGGTAG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAG
* * * *
18336348 CAGATCTCA-CTTCCCTGAAATTGCAGTGGAGCAGATTGAAGA
1 CAAATCTTATC-TCCCTGAAGTTGCAGTGGAGCAGACTGAAGA
18336390 TGGGCTACAG
Statistics
Matches: 556, Mismatches: 150, Indels: 95
0.69 0.19 0.12
Matches are distributed among these distances:
40 3 0.01
41 72 0.13
42 39 0.07
43 13 0.02
44 199 0.36
45 164 0.29
46 1 0.00
47 3 0.01
48 6 0.01
49 4 0.01
50 4 0.01
51 48 0.09
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (45 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAAAG
Found at i:18335795 original size:44 final size:43
Alignment explanation
Indices: 18335640--18336251 Score: 283
Period size: 44 Copynumber: 13.7 Consensus size: 43
18335630 AAGTTACAGC
* * * * *
18335640 TCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAG-AAAGCACG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAAGCCAA-TA-A
* * * *
18335685 TCTTATCCCCCTGAAGTTGCAGTGGAGCTGACTGAAGATGGC-A-AA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-T-TA-A-GCCAATAA
* *
18335730 TCTTATCTCTCTAAAGTTGCAGTGGAGCAGATTACAGCCAATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTA-AGCCAATAA
* * * * *
18335774 TCCTATCTCCCTGAAGTTGCAGGGGAGCAGATTGAAGACATTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAGCCAATAA
* ** *
18335818 TCTTATCTCCCTAAAGTTGCAGTGGAATAGATTAAAGCTATAAATCACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAGC---CAAT---A-A
* * * ** * * *
18335869 TCTTATCTCTCTAAAGTTGCAGTAGAGTTGATCATGGC-A-AA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGCCAATAA
* * *
18335910 TCTTAT-TTCCTCGAAGTTGCAGTGGAGTAGATTAAAACCAATAA
1 TCTTATCTCCCT-GAAGTTGCAGTGGAGCAGATT-AAGCCAATAA
* ** *
18335954 TCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TGA-AG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAGCCAATAA
* * * *
18335996 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAA-TCATAGCGAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGCCA-A--TAA
* * * * * *
18336041 TCTTATTTCCCTGAAGTTGCGGTAGAACAGATTAAAACTATAAATCACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAGC---CAAT---A-A
* * * * * * *
18336092 TCTTATCACTCTGAAGTTGCAGTAGAGTAGATCATGGC-A-AA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGCCAATAA
* * * *
18336133 TCTTATCTCCTTGAAGTTGTAGTGGAGTAGATCACAGCCAATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTA-AGCCAATAA
* * * * * *
18336177 TCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTGAAGACACTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAGCCAATAA
*
18336221 TCCTATCTCCCTGAAGTTGCAGTGGAGCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
18336252 CTGAAGATAG
Statistics
Matches: 430, Mismatches: 100, Indels: 75
0.71 0.17 0.12
Matches are distributed among these distances:
40 3 0.01
41 56 0.13
42 40 0.09
43 6 0.01
44 161 0.37
45 91 0.21
46 6 0.01
47 3 0.01
48 2 0.00
49 1 0.00
50 6 0.01
51 55 0.13
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28
Consensus pattern (43 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGCCAATAA
Found at i:18335965 original size:136 final size:139
Alignment explanation
Indices: 18335729--18335979 Score: 316
Period size: 136 Copynumber: 1.8 Consensus size: 139
18335719 AAGATGGCAA
*
18335729 ATCTTATCTCTCTAAAGTTGCAGTGGAGCAGATTACAGCCAATAATCCTATCTCCCTGAAGTTGC
1 ATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTACAGCCAATAATCCTATCTCCCTGAAGTTGC
* * * *
18335794 AGGGGAGCAGATTGAAGACATTAGTCTTATCTCCCTAAAGTTGCAGTGGAATAGATTAAAGCTAT
66 AGGGGAGCAGATTGAAAACAATAATCCTATCTCCCTAAAGTTGCAGTGGAATAGATTAAAGCTAT
18335859 AAATCACAG
131 AAATCACAG
** * * *
18335868 ATCTTATCTCTCTAAAGTTGCAGTAGAGTTGA-T-CATGGC-A-AATCTTAT-TTCCTCGAAGTT
1 ATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTACA-GCCAATAATCCTATCTCCCT-GAAGTT
* * *
18335928 GCAGTGGAGTAGATT-AAAACCAATAATCCTATCTCCCTGAAGTTGCAGTGGA
64 GCAGGGGAGCAGATTGAAAA-CAATAATCCTATCTCCCTAAAGTTGCAGTGGA
18335980 GCAGATTGAA
Statistics
Matches: 96, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
135 7 0.07
136 54 0.56
137 3 0.03
138 3 0.03
139 29 0.30
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (139 bp):
ATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATTACAGCCAATAATCCTATCTCCCTGAAGTTGC
AGGGGAGCAGATTGAAAACAATAATCCTATCTCCCTAAAGTTGCAGTGGAATAGATTAAAGCTAT
AAATCACAG
Found at i:18336088 original size:223 final size:224
Alignment explanation
Indices: 18335728--18336289 Score: 688
Period size: 223 Copynumber: 2.5 Consensus size: 224
18335718 GAAGATGGCA
* * * * * *
18335728 AATCTTATCTCTCTAAAGTTGCAGTGGAGCAGATT-ACAGCCAATAATCCTATCTCCCTGAAGTT
1 AATCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTGA-AGAC-ACAGTCCTATCTCCCTAAAGTT
* * * * *
18335792 GCAGGGGAGCAGATTGAAGACATTA--G--TCTTATCTCCCTAAAGTTGCAGTGGAATAGATTAA
64 GCAGTGGAGCAGACT-AA-TCA-TAGCGAATCTTATCTCCCTAAAGTTGCAGTAGAACAGATTAA
* * * *
18335853 AGCTATAAATCACAGATCTTATCTCTCTAAAGTTGCAGTAGAGTTGATCATGGCAAATCTTATTT
126 AACTATAAATCACAGATCTTATCACTCTAAAGTTGCAGTAGAGTAGATCATGGCAAATCTTATCT
*
18335918 CCTCGAAGTTGCAGTGGAGTAGATTAAAACCAAT
191 CCTCGAAGTTGCAGTGGAGTAGATCAAAACCAAT
* ** *
18335952 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTGA-AGTCTTATCTCCCTAAAGTTGC
1 AATCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGACACAGTCCTATCTCCCTAAAGTTGC
* * *
18336016 AGTGGAGCAGACTAATCATAGCGAATCTTATTTCCCTGAAGTTGCGGTAGAACAGATTAAAACTA
66 AGTGGAGCAGACTAATCATAGCGAATCTTATCTCCCTAAAGTTGCAGTAGAACAGATTAAAACTA
* *
18336081 TAAATCACAGATCTTATCACTCTGAAGTTGCAGTAGAGTAGATCATGGCAAATCTTATCTCCTTG
131 TAAATCACAGATCTTATCACTCTAAAGTTGCAGTAGAGTAGATCATGGCAAATCTTATCTCCTCG
* * *
18336146 AAGTTGTAGTGGAGTAGATCACAGCCAAT
196 AAGTTGCAGTGGAGTAGATCAAAACCAAT
* *
18336175 AATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTGAAGACACTAGTCCTATCTCCCTGAAGTTG
1 AATCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGACAC-AGTCCTATCTCCCTAAAGTTG
* ** ** *
18336240 CAGTGGAGCAGACTGAA-GATAGCGGGTCTTATCTTTCTGAAGTTGCAGTA
65 CAGTGGAGCAGACT-AATCATAGCGAATCTTATCTCCCTAAAGTTGCAGTA
18336290 AAGCAAATCA
Statistics
Matches: 291, Mismatches: 39, Indels: 15
0.84 0.11 0.04
Matches are distributed among these distances:
219 2 0.01
220 2 0.01
221 3 0.01
222 30 0.10
223 158 0.54
224 34 0.12
225 60 0.21
226 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (224 bp):
AATCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGACACAGTCCTATCTCCCTAAAGTTGC
AGTGGAGCAGACTAATCATAGCGAATCTTATCTCCCTAAAGTTGCAGTAGAACAGATTAAAACTA
TAAATCACAGATCTTATCACTCTAAAGTTGCAGTAGAGTAGATCATGGCAAATCTTATCTCCTCG
AAGTTGCAGTGGAGTAGATCAAAACCAAT
Found at i:18337793 original size:11 final size:11
Alignment explanation
Indices: 18337777--18337801 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
18337767 TAATGTGCTT
18337777 AATTTTATTTA
1 AATTTTATTTA
18337788 AATTTTATTTA
1 AATTTTATTTA
18337799 AAT
1 AAT
18337802 ATTTTTTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
AATTTTATTTA
Found at i:18337943 original size:24 final size:23
Alignment explanation
Indices: 18337911--18338019 Score: 80
Period size: 24 Copynumber: 4.4 Consensus size: 23
18337901 AAATTTATTG
*
18337911 TATATTATTGTTTTAATTTTTATA
1 TATATTATT-TTTTAATTTTCATA
18337935 TATATTATTTTTCTAAGTTTTCCATGCA
1 TATATTATTTTT-TAA-TTTT-CAT--A
18337963 T-TATTACTTTTTTTAATTTGT--TA
1 TATATTA--TTTTTTAATTT-TCATA
* *
18337986 TATATTATTAATTTAATTTCCATA
1 TATATTATT-TTTTAATTTTCATA
18338010 TATATTATTT
1 TATATTATTT
18338020 AATATGTTTT
Statistics
Matches: 69, Mismatches: 4, Indels: 25
0.70 0.04 0.26
Matches are distributed among these distances:
22 2 0.03
23 13 0.19
24 28 0.41
25 5 0.07
26 2 0.03
27 8 0.12
28 6 0.09
29 5 0.07
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.61
Consensus pattern (23 bp):
TATATTATTTTTTAATTTTCATA
Found at i:18337992 original size:27 final size:25
Alignment explanation
Indices: 18337913--18337995 Score: 78
Period size: 27 Copynumber: 3.2 Consensus size: 25
18337903 ATTTATTGTA
*
18337913 TATTATTGTTTTAATTTTTATATA-
1 TATTATTTTTTTAATTTTTATATAT
* * **
18337937 TATTATTTTTCTAAGTTTTCCATGCAT
1 TATTATTTTTTTAA-TTTT-TATATAT
18337964 TATTACTTTTTTTAATTTGTTATATAT
1 TATTA-TTTTTTTAATTT-TTATATAT
18337991 TATTA
1 TATTA
18337996 ATTTAATTTC
Statistics
Matches: 45, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
24 12 0.27
25 4 0.09
26 3 0.07
27 17 0.38
28 9 0.20
ACGTcount: A:0.27, C:0.06, G:0.05, T:0.63
Consensus pattern (25 bp):
TATTATTTTTTTAATTTTTATATAT
Found at i:18340553 original size:10 final size:10
Alignment explanation
Indices: 18340540--18340574 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
18340530 TTGTGACTAA
18340540 ATGTGATTAT
1 ATGTGATTAT
18340550 ATGTGATTAT
1 ATGTGATTAT
* *
18340560 TTGTAATTAT
1 ATGTGATTAT
18340570 ATGTG
1 ATGTG
18340575 GTTAATGCAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.20, T:0.51
Consensus pattern (10 bp):
ATGTGATTAT
Found at i:18342773 original size:15 final size:15
Alignment explanation
Indices: 18342753--18342782 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
18342743 TTCACTATTA
18342753 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
18342768 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
18342783 ACATGTATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.07, G:0.07, T:0.73
Consensus pattern (15 bp):
TGTCTTTTATATTTT
Found at i:18342782 original size:14 final size:14
Alignment explanation
Indices: 18342748--18342782 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
18342738 CAAATTTCAC
*
18342748 TATTATGTCTTTTA
1 TATTTTGTCTTTTA
18342762 TATTTTTGTCTTTTA
1 TA-TTTTGTCTTTTA
18342777 TATTTT
1 TATTTT
18342783 ACATGTATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.71
Consensus pattern (14 bp):
TATTTTGTCTTTTA
Found at i:18344494 original size:29 final size:29
Alignment explanation
Indices: 18344460--18344561 Score: 159
Period size: 29 Copynumber: 3.5 Consensus size: 29
18344450 CCGACTATCA
*
18344460 ATTATGAAAAGGGATGGTGACAACCATCG
1 ATTATGAAAAAGGATGGTGACAACCATCG
* *
18344489 AATATGAAAAAGAATGGTGACAACCATCG
1 ATTATGAAAAAGGATGGTGACAACCATCG
*
18344518 ATTATGAAAAAGGATGGTGACGACCATCG
1 ATTATGAAAAAGGATGGTGACAACCATCG
*
18344547 ATTATGAAAAGGGAT
1 ATTATGAAAAAGGAT
18344562 AGCTTCAACT
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.42, C:0.12, G:0.25, T:0.21
Consensus pattern (29 bp):
ATTATGAAAAAGGATGGTGACAACCATCG
Found at i:18344576 original size:29 final size:30
Alignment explanation
Indices: 18344436--18344565 Score: 124
Period size: 29 Copynumber: 4.5 Consensus size: 30
18344426 TATTGAAAAC
* * * *
18344436 GAAAAGGGATAGCT-CCGACTATCAATTAT
1 GAAAAGGGATAGCTGACAACCATCGATTAT
* *
18344465 GAAAAGGGAT-GGTGACAACCATCGAATAT
1 GAAAAGGGATAGCTGACAACCATCGATTAT
* * *
18344494 GAAAAAGAAT-GGTGACAACCATCGATTAT
1 GAAAAGGGATAGCTGACAACCATCGATTAT
* * *
18344523 GAAAAAGGAT-GGTGACGACCATCGATTAT
1 GAAAAGGGATAGCTGACAACCATCGATTAT
18344552 GAAAAGGGATAGCT
1 GAAAAGGGATAGCT
18344566 TCAACTATCG
Statistics
Matches: 86, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
28 2 0.02
29 82 0.95
30 2 0.02
ACGTcount: A:0.41, C:0.14, G:0.25, T:0.20
Consensus pattern (30 bp):
GAAAAGGGATAGCTGACAACCATCGATTAT
Found at i:18344576 original size:58 final size:58
Alignment explanation
Indices: 18344436--18344587 Score: 171
Period size: 58 Copynumber: 2.6 Consensus size: 58
18344426 TATTGAAAAC
* * * *
18344436 GAAAAGGGATAGCTCCGACTATCAATTATGAAAAGGGATGGTGACAACCATCGAATAT
1 GAAAAGGGATAGCTACAACTATCGATTATGAAAAAGGATGGTGACAACCATCGAATAT
* * * * * *
18344494 GAAAAAGAAT-GGTGACAACCATCGATTATGAAAAAGGATGGTGACGACCATCGATTAT
1 GAAAAGGGATAGCT-ACAACTATCGATTATGAAAAAGGATGGTGACAACCATCGAATAT
* *
18344552 GAAAAGGGATAGCTTCAACTATCGAATTAAGAAAAA
1 GAAAAGGGATAGCTACAACTATCG-ATTATGAAAAA
18344588 TGAGAGCTTC
Statistics
Matches: 75, Mismatches: 16, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
57 2 0.03
58 61 0.81
59 12 0.16
ACGTcount: A:0.43, C:0.14, G:0.23, T:0.20
Consensus pattern (58 bp):
GAAAAGGGATAGCTACAACTATCGATTATGAAAAAGGATGGTGACAACCATCGAATAT
Found at i:18352134 original size:30 final size:29
Alignment explanation
Indices: 18352045--18352263 Score: 156
Period size: 30 Copynumber: 7.4 Consensus size: 29
18352035 TATTAAAAAC
** *
18352045 GAAAAGGGATAACTCCGGCTATCGATTAT
1 GAAAAGGGATGGCTTCGGCTATCGATTAT
* ** *
18352074 GAAAAGGGATGG-TGACAACCATCGATTAT
1 GAAAAGGGATGGCT-TCGGCTATCGATTAT
*
18352103 GAAAAAGGATGGCTTCGGCTATCGATCTAT
1 GAAAAGGGATGGCTTCGGCTATCGAT-TAT
18352133 GAAAAGGGATGGCTTCGGCTATCGAATTAT
1 GAAAAGGGATGGCTTCGGCTATCG-ATTAT
* * * *
18352163 GAAAAGGGATGG-TGACGACCATCAAATTAT
1 GAAAAGGGATGGCT-TCGGCTATC-GATTAT
* * * * *
18352193 G-AAAGATGATAGCTTCAGCTATTGAATTAA
1 GAAAAG-GGATGGCTTCGGCTATCG-ATTAT
* * *
18352223 GAAAAGGGATAGCTTCGGCTATTGAATAT
1 GAAAAGGGATGGCTTCGGCTATCGATTAT
*
18352252 CAAAAAGGGATG
1 -GAAAAGGGATG
18352264 TGCCAACCAT
Statistics
Matches: 148, Mismatches: 31, Indels: 21
0.74 0.16 0.10
Matches are distributed among these distances:
28 1 0.01
29 48 0.32
30 92 0.62
31 7 0.05
ACGTcount: A:0.36, C:0.13, G:0.26, T:0.24
Consensus pattern (29 bp):
GAAAAGGGATGGCTTCGGCTATCGATTAT
Found at i:18352230 original size:90 final size:90
Alignment explanation
Indices: 18352017--18352280 Score: 299
Period size: 90 Copynumber: 3.0 Consensus size: 90
18352007 TTGACGGACG
* * *
18352017 AAAAGGAATAGCTTCAGCTATT-AA-AAACGAAAAGGGATAACTCCGGCTATCG-ATTATGAAAA
1 AAAAGG-ATAGCTTCAGCTATTGAATTAA-GAAAAGGGATAGCTTCGGCTATCGAATTATGAAAA
*
18352079 GGGATGGTGACAACCATC-GATTATGA
64 GGGATGGTGACAACCATCAAATTATGA
* * * * *
18352105 AAAAGGATGGCTTCGGCTATCG-ATCTATGAAAAGGGATGGCTTCGGCTATCGAATTATGAAAAG
1 AAAAGGATAGCTTCAGCTATTGAAT-TAAGAAAAGGGATAGCTTCGGCTATCGAATTATGAAAAG
*
18352169 GGATGGTGACGACCATCAAATTATGA
65 GGATGGTGACAACCATCAAATTATGA
* * * *
18352195 AAGATGATAGCTTCAGCTATTGAATTAAGAAAAGGGATAGCTTCGGCTATTGAA-TATCAAAAAG
1 AAAAGGATAGCTTCAGCTATTGAATTAAGAAAAGGGATAGCTTCGGCTATCGAATTAT-GAAAAG
* *
18352259 GGAT-GTGCCAACCATCATATTA
65 GGATGGTGACAACCATCAAATTA
18352281 CTACCTCGTT
Statistics
Matches: 147, Mismatches: 22, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
87 13 0.09
88 27 0.18
89 46 0.31
90 59 0.40
91 2 0.01
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (90 bp):
AAAAGGATAGCTTCAGCTATTGAATTAAGAAAAGGGATAGCTTCGGCTATCGAATTATGAAAAGG
GATGGTGACAACCATCAAATTATGA
Found at i:18354869 original size:37 final size:36
Alignment explanation
Indices: 18354818--18354930 Score: 92
Period size: 37 Copynumber: 3.1 Consensus size: 36
18354808 ATTCCAAAAA
*
18354818 TAATATTATTTTAATATTTTAATATTAAATTAAATT
1 TAATATTATCTTAATATTTTAATATTAAATTAAATT
*
18354854 TAATACTTATCTTAATAGTATTT--TATTAATTTAATATT
1 TAATA-TTATCTTAATA-T-TTTAATATTAAATTAA-ATT
* * *
18354892 AAACTAATTATCTTAA-AATTTAAT-TT-AATTTAATT
1 TAA-T-ATTATCTTAATATTTTAATATTAAATTAAATT
18354927 TAAT
1 TAAT
18354931 GTTTAAATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
34 1 0.02
35 5 0.08
36 12 0.19
37 22 0.35
38 8 0.13
39 13 0.21
40 1 0.02
ACGTcount: A:0.42, C:0.04, G:0.01, T:0.53
Consensus pattern (36 bp):
TAATATTATCTTAATATTTTAATATTAAATTAAATT
Found at i:18356533 original size:212 final size:212
Alignment explanation
Indices: 18356166--18356582 Score: 744
Period size: 212 Copynumber: 2.0 Consensus size: 212
18356156 GTTTCTTTAT
* * **
18356166 TTCTTTCAGTTATATTGTGTCTTGTATGTGTTTATTTTCAAGTATGGACTAGTTCTCTAAATACC
1 TTCTTTCAATTATATTGTGTCTTGGATGTGTTTATTTTCAAGTATAAACTAGTTCTCTAAATACC
18356231 TAGGGAGATGAACTCTATGATGGATTCAGTCGTTTAATTTTTATTTACGCAATAAATACTTAATT
66 TAGGGAGATGAACTCTATGATGGATTCAGTCGTTTAATTTTTATTTACGCAATAAATACTTAATT
* * *
18356296 TCGTATTCTAAATTATGTGTGCTTAATTCTTGGTTTGATATTTTTAGATTATTGATTCATGTTTG
131 TCGTATTCTAAATTATGTGTGCTTAATTCTTGGTTTCATATTTTTAGATTACTGATCCATGTTTG
18356361 ATGTGCTTAATTCTTGA
196 ATGTGCTTAATTCTTGA
18356378 TTCTTTCAATTATATTGTGTCTTGGATGTGTTTATTTTCAAGTATAAACTAGTTCTCTAAATACC
1 TTCTTTCAATTATATTGTGTCTTGGATGTGTTTATTTTCAAGTATAAACTAGTTCTCTAAATACC
18356443 TAGGGAGATGAACTCTATGATGGATTCAGTCGTTTAATTTTTATTTACGCAATAAATACTTAATT
66 TAGGGAGATGAACTCTATGATGGATTCAGTCGTTTAATTTTTATTTACGCAATAAATACTTAATT
* *
18356508 TCTTATTCTCAATTATGTGTGCTTAATTCTTGGTTTCATATTTTTAGATTACTGATCCATGTTTG
131 TCGTATTCTAAATTATGTGTGCTTAATTCTTGGTTTCATATTTTTAGATTACTGATCCATGTTTG
*
18356573 ATGTGTTTAA
196 ATGTGCTTAA
18356583 ATCAGTGGTT
Statistics
Matches: 195, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
212 195 1.00
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.47
Consensus pattern (212 bp):
TTCTTTCAATTATATTGTGTCTTGGATGTGTTTATTTTCAAGTATAAACTAGTTCTCTAAATACC
TAGGGAGATGAACTCTATGATGGATTCAGTCGTTTAATTTTTATTTACGCAATAAATACTTAATT
TCGTATTCTAAATTATGTGTGCTTAATTCTTGGTTTCATATTTTTAGATTACTGATCCATGTTTG
ATGTGCTTAATTCTTGA
Found at i:18357327 original size:20 final size:20
Alignment explanation
Indices: 18357303--18357357 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 20
18357293 ATTCTCATTG
18357303 AATTAATAAAATTA-TATTT
1 AATTAATAAAATTATTATTT
18357322 AGATT-ATAAGAATATATTATTT
1 A-ATTAATAA-AAT-TATTATTT
18357344 AA-TATATAAAATTA
1 AATTA-ATAAAATTA
18357358 CATGCAATGT
Statistics
Matches: 30, Mismatches: 0, Indels: 11
0.73 0.00 0.27
Matches are distributed among these distances:
19 5 0.17
20 9 0.30
21 6 0.20
22 10 0.33
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.44
Consensus pattern (20 bp):
AATTAATAAAATTATTATTT
Found at i:18357678 original size:29 final size:31
Alignment explanation
Indices: 18357623--18357701 Score: 85
Period size: 30 Copynumber: 2.6 Consensus size: 31
18357613 ATATTAAAAT
18357623 TATATATAAA-TTTAGATTTAATATGTAATT-
1 TATATATAAATTTTA-ATTTAATATGTAATTA
*
18357653 TGATATATAAATTTTAATTT-A-GTGTAATTA
1 T-ATATATAAATTTTAATTTAATATGTAATTA
*
18357683 TACATAATAAATTTTAATT
1 TATAT-ATAAATTTTAATT
18357702 ATGATTCAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
29 10 0.23
30 16 0.37
31 13 0.30
32 4 0.09
ACGTcount: A:0.43, C:0.01, G:0.06, T:0.49
Consensus pattern (31 bp):
TATATATAAATTTTAATTTAATATGTAATTA
Found at i:18357916 original size:29 final size:31
Alignment explanation
Indices: 18357875--18357954 Score: 85
Period size: 29 Copynumber: 2.6 Consensus size: 31
18357865 GAATTAGATC
*
18357875 AATCAGAATTTCATATATAA-AATTACACA-A
1 AATCA-AAATTCATATATAACAATTACACATA
* *
18357905 AATCAAAATTCATGTA-AACAATTACTCATTA
1 AATCAAAATTCATATATAACAATTACACA-TA
*
18357936 AACCAAAATTCATATATAA
1 AATCAAAATTCATATATAA
18357955 TTTTAAGATT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
28 2 0.05
29 17 0.41
30 5 0.12
31 15 0.37
32 2 0.05
ACGTcount: A:0.53, C:0.15, G:0.03, T:0.30
Consensus pattern (31 bp):
AATCAAAATTCATATATAACAATTACACATA
Found at i:18360476 original size:18 final size:19
Alignment explanation
Indices: 18360448--18360487 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
18360438 CCTCTTCTCC
18360448 CTTCTTTCATCATCATCTT
1 CTTCTTTCATCATCATCTT
*
18360467 CTTC-TTCATCATCCTCTT
1 CTTCTTTCATCATCATCTT
18360485 CTT
1 CTT
18360488 TGTATCAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.12, C:0.35, G:0.00, T:0.53
Consensus pattern (19 bp):
CTTCTTTCATCATCATCTT
Found at i:18360477 original size:15 final size:15
Alignment explanation
Indices: 18360457--18360487 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
18360447 CCTTCTTTCA
*
18360457 TCATCATCTTCTTCT
1 TCATCATCCTCTTCT
18360472 TCATCATCCTCTTCT
1 TCATCATCCTCTTCT
18360487 T
1 T
18360488 TGTATCAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.35, G:0.00, T:0.52
Consensus pattern (15 bp):
TCATCATCCTCTTCT
Found at i:18363304 original size:27 final size:27
Alignment explanation
Indices: 18363264--18363320 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
18363254 TCTTTTACTT
* *
18363264 AAAAGGGACGGAACTATACGCAAACTA
1 AAAAGAGACCGAACTATACGCAAACTA
18363291 AAAAGAGACCGAACTATACGCAAACTA
1 AAAAGAGACCGAACTATACGCAAACTA
18363318 AAA
1 AAA
18363321 CGTTTGCTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.53, C:0.19, G:0.18, T:0.11
Consensus pattern (27 bp):
AAAAGAGACCGAACTATACGCAAACTA
Found at i:18363397 original size:15 final size:15
Alignment explanation
Indices: 18363377--18363409 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
18363367 ATTTTGTCTC
18363377 TTAACTCTACTAAAA
1 TTAACTCTACTAAAA
18363392 TTAACTCTACTAAAA
1 TTAACTCTACTAAAA
18363407 TTA
1 TTA
18363410 TGGTGGGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.36
Consensus pattern (15 bp):
TTAACTCTACTAAAA
Found at i:18367663 original size:43 final size:41
Alignment explanation
Indices: 18367557--18367667 Score: 132
Period size: 43 Copynumber: 2.7 Consensus size: 41
18367547 GGAAAAATGT
**
18367557 CGCTATAGAACATGACCTTTAGCGGCGTTTCCCCAAAAGGC
1 CGCTATAGAACATGACCTTTAGCGGCGTTTCCCCAAAACAC
* * *
18367598 CGCTATAGAACATGACTTTTAGCGGCGCTTTTCTCACAAACAC
1 CGCTATAGAACATGACCTTTAGCGGCG-TTTCCCCA-AAACAC
* * *
18367641 CGCTATAGGACTTGACCATTAGCGGCG
1 CGCTATAGAACATGACCTTTAGCGGCG
18367668 GATTTCCTAA
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
41 26 0.44
42 6 0.10
43 27 0.46
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (41 bp):
CGCTATAGAACATGACCTTTAGCGGCGTTTCCCCAAAACAC
Found at i:18373724 original size:9 final size:9
Alignment explanation
Indices: 18373710--18373912 Score: 125
Period size: 9 Copynumber: 23.0 Consensus size: 9
18373700 TAAGTAGAAT
18373710 TAAGTTATG
1 TAAGTTATG
18373719 TAAGTTATG
1 TAAGTTATG
* * *
18373728 ATATGATATA
1 -TAAGTTATG
*
18373738 T-ATTTATG
1 TAAGTTATG
*
18373746 CAAGTTATG
1 TAAGTTATG
18373755 TAAGTTATG
1 TAAGTTATG
18373764 TAAGTTATG
1 TAAGTTATG
* * *
18373773 ATATGATATA
1 -TAAGTTATG
*
18373783 T-ATTTATG
1 TAAGTTATG
18373791 T-A-TTATG
1 TAAGTTATG
18373798 TAAGTTATG
1 TAAGTTATG
*
18373807 TAAGTTATAA
1 TAAGTTAT-G
* * *
18373817 TATGATATA
1 TAAGTTATG
*
18373826 T-ATTTATG
1 TAAGTTATG
*
18373834 TAGGTTATG
1 TAAGTTATG
18373843 TAAGTTATG
1 TAAGTTATG
*
18373852 TAGGTTATG
1 TAAGTTATG
18373861 TAAGTTATG
1 TAAGTTATG
* * *
18373870 ATATGATATA
1 -TAAGTTATG
* *
18373880 T-ATTTATA
1 TAAGTTATG
18373888 T-A-TTATG
1 TAAGTTATG
18373895 TAAGTTATG
1 TAAGTTATG
18373904 TAAGTTATG
1 TAAGTTATG
18373913 ATCCAAAGTC
Statistics
Matches: 148, Mismatches: 36, Indels: 20
0.73 0.18 0.10
Matches are distributed among these distances:
7 11 0.07
8 20 0.14
9 93 0.63
10 24 0.16
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:18373790 original size:36 final size:40
Alignment explanation
Indices: 18373710--18373860 Score: 158
Period size: 45 Copynumber: 3.5 Consensus size: 40
18373700 TAAGTAGAAT
*
18373710 TAAGTTATGTAAGTTATGATATGATATATATTTATGCAAGTTATG
1 TAAGTTATGTAAGTTATGATATGA-ATATA-TTA-G-TA-TTATG
18373755 TAAGTTATGTAAGTTATGATATGATATATATTTATGTATTATG
1 TAAGTTATGTAAGTTATGATATGA-ATATA-TTA-GTATTATG
*
18373798 TAAGTTATGTAAGTTATAATATGATATATATTTATGTAGGTTATG
1 TAAGTTATGTAAGTTATGATATGA-ATATA-TTA-GTA--TTATG
*
18373843 TAAGTTATGTAGGTTATG
1 TAAGTTATGTAAGTTATG
18373861 TAAGTTATGA
Statistics
Matches: 100, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
43 42 0.42
44 1 0.01
45 57 0.57
ACGTcount: A:0.34, C:0.01, G:0.19, T:0.46
Consensus pattern (40 bp):
TAAGTTATGTAAGTTATGATATGAATATATTAGTATTATG
Found at i:18373807 original size:88 final size:92
Alignment explanation
Indices: 18373710--18373914 Score: 301
Period size: 97 Copynumber: 2.2 Consensus size: 92
18373700 TAAGTAGAAT
18373710 TAAGTTATGTAAGTTATGATATG-ATATA-TA-T-TTATGCAAGTTATGTAAGTTATGTAAGTTA
1 TAAGTTATGTAAGTTATGATATGAATATATTAGTGTTATGCAAGTTATGTAAGTTATGTAAGTTA
*
18373771 TGATATGATATATATTTATGTATTATG
66 TGATATGATATATATTTATATATTATG
* * *
18373798 TAAGTTATGTAAGTTATAATATGATATATATTTATGTAGGTTATGTAAGTTATGTAGGTTATGTA
1 TAAGTTATGTAAGTTATGATATGA-ATATA-TTA-GT--GTTATGCAAGTTATGTAAGTTATGTA
18373863 AGTTATGATATGATATATATTTATATATTATG
61 AGTTATGATATGATATATATTTATATATTATG
18373895 TAAGTTATGTAAGTTATGAT
1 TAAGTTATGTAAGTTATGAT
18373915 CCAAAGTCTT
Statistics
Matches: 103, Mismatches: 5, Indels: 9
0.88 0.04 0.08
Matches are distributed among these distances:
88 22 0.21
90 5 0.05
92 2 0.02
94 1 0.01
97 73 0.71
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.47
Consensus pattern (92 bp):
TAAGTTATGTAAGTTATGATATGAATATATTAGTGTTATGCAAGTTATGTAAGTTATGTAAGTTA
TGATATGATATATATTTATATATTATG
Found at i:18373866 original size:54 final size:52
Alignment explanation
Indices: 18373734--18373912 Score: 223
Period size: 54 Copynumber: 3.6 Consensus size: 52
18373724 TATGATATGA
* *
18373734 TATATATTTATGCAAGTTATGTAAGTTATGTAAGTTATGATATG----ATA--
1 TATATA-TTATGTAAGTTATGTAAGTTATGTAAGTTATAATATGATATATATT
18373781 TATAT-TTATGT-A-TTATGTAAGTTATGTAAGTTATAATATGATATATATT
1 TATATATTATGTAAGTTATGTAAGTTATGTAAGTTATAATATGATATATATT
* * *
18373830 TATGTAGGTTATGTAAGTTATGTAGGTTATGTAAGTTATGATATGATATATATT
1 TATATA--TTATGTAAGTTATGTAAGTTATGTAAGTTATAATATGATATATATT
18373884 TATATATTATGTAAGTTATGTAAGTTATG
1 TATATATTATGTAAGTTATGTAAGTTATG
18373913 ATCCAAAGTC
Statistics
Matches: 114, Mismatches: 7, Indels: 17
0.83 0.05 0.12
Matches are distributed among these distances:
43 27 0.24
44 1 0.01
45 5 0.04
47 8 0.07
49 4 0.04
52 28 0.25
53 1 0.01
54 40 0.35
ACGTcount: A:0.35, C:0.01, G:0.17, T:0.47
Consensus pattern (52 bp):
TATATATTATGTAAGTTATGTAAGTTATGTAAGTTATAATATGATATATATT
Found at i:18373984 original size:13 final size:13
Alignment explanation
Indices: 18373966--18373992 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
18373956 TGATTGTCCT
18373966 CTTTAAATTTTAA
1 CTTTAAATTTTAA
18373979 CTTTAAATTTTAA
1 CTTTAAATTTTAA
18373992 C
1 C
18373993 CCTTTAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (13 bp):
CTTTAAATTTTAA
Found at i:18375274 original size:12 final size:12
Alignment explanation
Indices: 18375257--18375286 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
18375247 AATAGCATGT
18375257 TCCATTCTCAAC
1 TCCATTCTCAAC
*
18375269 TCCATTCTCACC
1 TCCATTCTCAAC
18375281 TCCATT
1 TCCATT
18375287 TTAAACTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.20, C:0.43, G:0.00, T:0.37
Consensus pattern (12 bp):
TCCATTCTCAAC
Found at i:18377642 original size:17 final size:18
Alignment explanation
Indices: 18377615--18377676 Score: 56
Period size: 17 Copynumber: 3.3 Consensus size: 18
18377605 ATATTAGTTT
*
18377615 TAAAAATATAAATGTACA
1 TAAAAATATAAATATACA
18377633 TAAAAA-ATAAATATACA
1 TAAAAATATAAATATACA
*
18377650 -AATATACATATATATATTACA
1 TAA-A-A-ATATAAATA-TACA
18377671 TAAAAA
1 TAAAAA
18377677 ACGATGCATG
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
16 2 0.06
17 11 0.31
18 7 0.19
19 2 0.06
20 7 0.19
21 5 0.14
22 2 0.06
ACGTcount: A:0.63, C:0.06, G:0.02, T:0.29
Consensus pattern (18 bp):
TAAAAATATAAATATACA
Found at i:18377709 original size:3 final size:3
Alignment explanation
Indices: 18377696--18377746 Score: 84
Period size: 3 Copynumber: 16.7 Consensus size: 3
18377686 GCATATGAAT
*
18377696 ATA AGA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATAA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA
18377742 ATA AT
1 ATA AT
18377747 TTATTTTCTT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
3 42 0.93
4 3 0.07
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:18379370 original size:44 final size:44
Alignment explanation
Indices: 18379224--18379646 Score: 248
Period size: 44 Copynumber: 9.7 Consensus size: 44
18379214 GTTTATTCAG
* * * * *
18379224 TCTGCCCCACTGCAATTTCAGGGGGATAAGA-CT-TGCTTTGCTGAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGATTT--T-AA
* * * * *
18379269 TCTGCTCCATTGCAACTTCAAGGAGATAAGA-C-CTGA-TGTGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGATTTTAA
* * *
18379310 TCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGATTTTAA
* * * **
18379354 TCCGCTCCACTGCAACTTTAGGGAGATAAGAT-TATTGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCT-GTGATTTTAA
* ** ***
18379398 TTTGCTCCACTGCAACTTCAGGGAGATAAGAT-TCGCCATCTTCCT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCT-GTGAT-TTTAA
* *
18379443 TCTGCGT-CACTGCAACTTCA-GGAGGATAAGA-CT-TGCTTACTTAG
1 TCTGC-TCCACTGCAACTTCAGGGA-GATAAGATCTGTGATT--TTAA
* * * ***
18379487 TCTGCTCCACTGTAACTTTAGGGAGATAAGA-CT-AGA-TGCGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGATTTTAA
* * *
18379528 TCTGCT-CTCTACAACTTCAGAGAGATAAGATCTGTGATTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGATTTTAA
* * * * **
18379571 TCCGCTTCACTGCAACTTCAGGGAGATAGGAT-TATTGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCT-GTGATTTTAA
* *
18379615 TCTGCTCCACTCCAACTTCAGAGAGATAAGAT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGAT
18379647 TCGCTCTCTT
Statistics
Matches: 286, Mismatches: 74, Indels: 37
0.72 0.19 0.09
Matches are distributed among these distances:
40 19 0.07
41 34 0.12
42 5 0.02
43 15 0.05
44 153 0.53
45 59 0.21
46 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTGATTTTAA
Found at i:18379608 original size:217 final size:219
Alignment explanation
Indices: 18379219--18379692 Score: 713
Period size: 217 Copynumber: 2.2 Consensus size: 219
18379209 GATTTGTTTA
* * * * *
18379219 TTCAGTCTGCCCCACTGCAATTTCAGGGGGATAAGACTTGCTTTGCTGAGTCTGCTCCATTGCAA
1 TTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTTACTGAGTCTGCTCCACTGCAA
* *
18379284 CTTCAAGGAGATAAGACCTGATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTGAT
66 CTTCAAGGAGATAAGACCTGATGCGATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTGAT
* * *
18379349 TTTAATCCGCTCCACTGCAACTTTAGGGAGATAAGATTATTGGCTTTAATTTGCTCCACTGCAAC
131 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCACTCCAAC
*
18379414 TTCAGGGAGATAAGATTCGC-CATC
196 TTCAGAGAGATAAGATTCGCTC-TC
** * * *
18379438 TTCCTTCTGCGTCACTGCAACTTCAGGAGGATAAGACTTGC-TTACTTAGTCTGCTCCACTGTAA
1 TTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTTACTGAGTCTGCTCCACTGCAA
* * *
18379502 CTTTAGGGAGATAAGA-CTAGATGCGATCTGCTCT-CTACAACTTCAGAGAGATAAGATCTGTGA
66 CTTCAAGGAGATAAGACCT-GATGCGATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTGA
* *
18379565 TTTTAATCCGCTTCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTCCAA
130 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCACTCCAA
18379630 CTTCAGAGAGATAAGATTCGCTCTC
195 CTTCAGAGAGATAAGATTCGCTCTC
18379655 TTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACT
1 TTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACT
18379693 GGATATGATC
Statistics
Matches: 229, Mismatches: 24, Indels: 6
0.88 0.09 0.02
Matches are distributed among these distances:
217 147 0.64
218 47 0.21
219 35 0.15
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.30
Consensus pattern (219 bp):
TTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTTACTGAGTCTGCTCCACTGCAA
CTTCAAGGAGATAAGACCTGATGCGATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTGAT
TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTATTGGCTTTAATCTGCTCCACTCCAAC
TTCAGAGAGATAAGATTCGCTCTC
Found at i:18379679 original size:45 final size:43
Alignment explanation
Indices: 18379309--18379690 Score: 173
Period size: 44 Copynumber: 8.7 Consensus size: 43
18379299 ACCTGATGTG
* * * *
18379309 ATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTGATT-TT-A
1 ATCTGCTC-ACTGCAACTTCAGGGAGATAAGAT-T-CGCTTCTTCA
* * * *
18379353 ATCCGCTCCACTGCAACTTTAGGGAGATAAGATT--ATTGGCTTTA
1 ATCTGCT-CACTGCAACTTCAGGGAGATAAGATTCGCTT--CTTCA
* * *
18379397 ATTTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTCC
1 ATCTGCT-CACTGCAACTTCAGGGAGATAAGATTCG-CTTCTTCA
*
18379442 TTCTGCGTCACTGCAACTTCA-GGAGGATAAGACTT-GCTTACTT-A
1 ATCTGC-TCACTGCAACTTCAGGGA-GATAAGA-TTCGCTT-CTTCA
* * * * * * * *
18379486 GTCTGCTCCACTGTAACTTTAGGGAGATAAGACTAG---ATGCG
1 ATCTGCT-CACTGCAACTTCAGGGAGATAAGATTCGCTTCTTCA
* * * * *
18379527 ATCTGCTCTCTACAACTTCAGAGAGATAAGATCTGTGATT-TT-A
1 ATCTGCTCACTGCAACTTCAGGGAGATAAGAT-T-CGCTTCTTCA
* * * *
18379570 ATCCGCTTCACTGCAACTTCAGGGAGATAGGATT--ATTGGCTTTA
1 ATCTGC-TCACTGCAACTTCAGGGAGATAAGATTCGCTT--CTTCA
* *
18379614 ATCTGCTCCACTCCAACTTCAGAGAGATAAGATTCGCTCTCTTCA
1 ATCTGCT-CACTGCAACTTCAGGGAGATAAGATTCGCT-TCTTCA
*
18379659 GTCTGCCTCACTGCAACTTCA-GGAGGATAAGA
1 ATCTG-CTCACTGCAACTTCAGGGA-GATAAGA
18379691 CTGGATATGA
Statistics
Matches: 260, Mismatches: 46, Indels: 63
0.70 0.12 0.17
Matches are distributed among these distances:
40 26 0.10
41 7 0.03
42 1 0.00
43 14 0.05
44 142 0.55
45 62 0.24
46 6 0.02
47 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (43 bp):
ATCTGCTCACTGCAACTTCAGGGAGATAAGATTCGCTTCTTCA
Found at i:18379792 original size:44 final size:43
Alignment explanation
Indices: 18379713--18380319 Score: 292
Period size: 44 Copynumber: 13.8 Consensus size: 43
18379703 TGCTATTTTT
* * **
18379713 GATCTACTTCACTGCCAGTACAGGAAGGTAAGATCTGTTATCCTT-
1 GATCTACTTCA-TGCCAATATAGGAAGACAAGATCTGTT-T-CTTC
* * *
18379758 GATCTACTTCATGCCAATACATGAAGACAAGATCTATTTTCTTC
1 GATCTACTTCATGCCAATATAGGAAGACAAGATCT-GTTTCTTC
* * *
18379802 GATCTACTTC--GCCACCAGTATGGGAAGATAAGATCTGCTATCTTC
1 GATCTACTTCATGCCA--A-TATAGGAAGACAAGATCTG-TTTCTTC
* * * * * * *
18379847 AATCCATTTTGC-TACCAATATAGGAAGGCAGGATTTGCTTTCTTC
1 GATCTA-CTT-CATGCCAATATAGGAAGACAAGATCTG-TTTCTTC
* * * * *
18379892 GATCTACTTCACGCCAATACATGAAGATAAGATCTGCTATCTTC
1 GATCTACTTCATGCCAATATAGGAAGACAAGATCTG-TTTCTTC
* * * * *
18379936 AATCCACTTCGCTACCAATATAGGAAGACAGGATCTGTTATCTTC
1 GATCTACTTC-ATGCCAATATAGGAAGACAAGATCTGTT-TCTTC
* * *
18379981 GATCTACTTCACGCCAATACCTA--AAGACAAGATCTACTTTCTTT
1 GATCTACTTCATGCCAATA--TAGGAAGACAAGATCT-GTTTCTTC
*** *
18380025 GATCTACTTCGCCACCAATATGGGAAGACAAGA------TCTTC
1 GATCTACTTC-ATGCCAATATAGGAAGACAAGATCTGTTTCTTC
* * * * *
18380063 GATCCACTTCCTACCAATATAGGTAGACAAGATCTGATGTCTTC
1 GATCTACTTCATGCCAATATAGGAAGACAAGATCTG-TTTCTTC
* * * *
18380107 GATCTACTTCACGCCAATACATGAAGACAAAATCTGCTTTCTTC
1 GATCTACTTCATGCCAATATAGGAAGACAAGATCTG-TTTCTTC
* *
18380151 GATCTACTTC--GCCACCAGTATGGGAAAACAAGATCTGCATTT-TT-
1 GATCTACTTCATGCCA--A-TATAGGAAGACAAGATCTG--TTTCTTC
* * * * * *
18380195 GATCCACTTCGCTACCAATATAGGAAGACAGGATCTGCTATCTTT
1 GATCTACTTC-ATGCCAATATAGGAAGACAAGATCTG-TTTCTTC
* * * * * *
18380240 GATCTACTTCACGCCAATACATGAAGATAATATCTGCTTTCTTT
1 GATCTACTTCATGCCAATATAGGAAGACAAGATCTG-TTTCTTC
*** *
18380284 GATCTACTTCGCCACCAATATGGGAAGACAAGATCT
1 GATCTACTTC-ATGCCAATATAGGAAGACAAGATCT
18380320 TCGATCCACT
Statistics
Matches: 428, Mismatches: 99, Indels: 70
0.72 0.17 0.12
Matches are distributed among these distances:
37 19 0.04
38 13 0.03
42 8 0.02
43 7 0.02
44 210 0.49
45 156 0.36
46 8 0.02
47 4 0.01
48 3 0.01
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (43 bp):
GATCTACTTCATGCCAATATAGGAAGACAAGATCTGTTTCTTC
Found at i:18379810 original size:89 final size:87
Alignment explanation
Indices: 18379713--18380319 Score: 345
Period size: 89 Copynumber: 6.9 Consensus size: 87
18379703 TGCTATTTTT
* * * * *
18379713 GATCTACTTCACTGCCAGTACAGGAAGGTAAGATCTGTTATCCTT-GATCTACTTCATGCCAATA
1 GATCTACTTCAC-GCCAGTACAGGAAGATAAGATCTGCTAT-CTTCAATCCACTTC-TACCAATA
* * * *
18379777 CATGAAGACAAGATCTATTTTCTTC
63 TAGGAAGACAGGATCTGTTTTCTTC
* * ** *
18379802 GATCTACTTCGCCACCAGTATGGGAAGATAAGATCTGCTATCTTCAATCCATTTTGCTACCAATA
1 GATCTACTTC-ACGCCAGTACAGGAAGATAAGATCTGCTATCTTCAATCCA-CTT-CTACCAATA
* * *
18379867 TAGGAAGGCAGGATTTGCTTTCTTC
63 TAGGAAGACAGGATCTGTTTTCTTC
* *
18379892 GATCTACTTCACGCCAATACATGAAGATAAGATCTGCTATCTTCAATCCACTTCGCTACCAATAT
1 GATCTACTTCACGCCAGTACAGGAAGATAAGATCTGCTATCTTCAATCCACTT--CTACCAATAT
*
18379957 AGGAAGACAGGATCTGTTATCTTC
64 AGGAAGACAGGATCTGTTTTCTTC
* *** * * * ** * *
18379981 GATCTACTTCACGCCAATACCTAAAGACAAGATCTACTTTCTTTGATCTACTTCGCCACCAATAT
1 GATCTACTTCACGCCAGTACAGGAAGATAAGATCTGCTATCTTCAATCCACTT--CTACCAATAT
* *
18380046 GGGAAGACA--A---G--ATCTTC
64 AGGAAGACAGGATCTGTTTTCTTC
* * * * * * * * * *
18380063 GATCCACTTC-CTACCAATATAGGTAGACAAGATCTGATGTCTTCGATCTACTTC-ACGCCAATA
1 GATCTACTTCAC-GCCAGTACAGGAAGATAAGATCTGCTATCTTCAATCCACTTCTA--CCAATA
* * ** *
18380126 CATGAAGACAAAATCTGCTTTCTTC
63 TAGGAAGACAGGATCTGTTTTCTTC
* * ** * * * **
18380151 GATCTACTTCGCCACCAGTATGGGAAAACAAGATCTGC-ATTTTTGATCCACTTCGCTACCAATA
1 GATCTACTTC-ACGCCAGTACAGGAAGATAAGATCTGCTATCTTCAATCCACTT--CTACCAATA
* * *
18380215 TAGGAAGACAGGATCTGCTATCTTT
63 TAGGAAGACAGGATCTGTTTTCTTC
* * * * ** * *
18380240 GATCTACTTCACGCCAATACATGAAGATAATATCTGCTTTCTTTGATCTACTTCGCCACCAATAT
1 GATCTACTTCACGCCAGTACAGGAAGATAAGATCTGCTATCTTCAATCCACTT--CTACCAATAT
* *
18380305 GGGAAGACAAGATCT
64 AGGAAGACAGGATCT
18380320 TCGATCCACT
Statistics
Matches: 413, Mismatches: 84, Indels: 42
0.77 0.16 0.08
Matches are distributed among these distances:
79 1 0.00
80 1 0.00
81 14 0.03
82 46 0.11
83 1 0.00
84 1 0.00
86 1 0.00
87 1 0.00
88 48 0.12
89 257 0.62
90 40 0.10
91 2 0.00
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (87 bp):
GATCTACTTCACGCCAGTACAGGAAGATAAGATCTGCTATCTTCAATCCACTTCTACCAATATAG
GAAGACAGGATCTGTTTTCTTC
Found at i:18380081 original size:37 final size:38
Alignment explanation
Indices: 18380020--18380097 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 38
18380010 AGATCTACTT
* * *
18380020 TCTTTGATCTACTTCGCCACCAATATGGGAAGACAAGA
1 TCTTCGATCCACTTCGCCACCAATATAGGAAGACAAGA
* *
18380058 TCTTCGATCCACTTC-CTACCAATATAGGTAGACAAGA
1 TCTTCGATCCACTTCGCCACCAATATAGGAAGACAAGA
18380095 TCT
1 TCT
18380098 GATGTCTTCG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
37 22 0.63
38 13 0.37
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (38 bp):
TCTTCGATCCACTTCGCCACCAATATAGGAAGACAAGA
Found at i:18380241 original size:215 final size:214
Alignment explanation
Indices: 18379742--18380249 Score: 527
Period size: 215 Copynumber: 2.3 Consensus size: 214
18379732 ACAGGAAGGT
* * ** * * * *
18379742 AAGATCTGTTATCCTT-GATCTACTTCATGCCAATACATGAAGACAAGATCTATTTTCTTCGATC
1 AAGATCTGTCAT-CTTCGATCCACTTCACACCAATAC-TAAAGACAAGATCTACTATCTTTGATC
* * * * *
18379806 TACTTCGCCACCAGTATGGGAAGATAAGATCTGCTATCTTCAATCCATTTTGCTACCAATATAGG
64 TACTTCGCCACCAATATGGGAAGA-CA-A---G--ATCTTCGATCCA-CTTCCTACCAATATAGG
* * * * * * *
18379871 AAGGCAGGATTTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTATCTTC
121 AAGACAAGATCTGATGTCTTCGATCTACTTCACGCCAATACATGAAGACAAAATCTGCTATCTTC
* *
18379936 AATCCACTTCGCTACCAATATAGGAAGAC
186 AATCCACTTCGCCACCAATATAGGAAAAC
* * * * *
18379965 AGGATCTGTTATCTTCGATCTACTTCACGCCAATACCTAAAGACAAGATCTACTTTCTTTGATCT
1 AAGATCTGTCATCTTCGATCCACTTCACACCAATA-CTAAAGACAAGATCTACTATCTTTGATCT
*
18380030 ACTTCGCCACCAATATGGGAAGACAAGATCTTCGATCCACTTCCTACCAATATAGGTAGACAAGA
65 ACTTCGCCACCAATATGGGAAGACAAGATCTTCGATCCACTTCCTACCAATATAGGAAGACAAGA
* * *
18380095 TCTGATGTCTTCGATCTACTTCACGCCAATACATGAAGACAAAATCTGCTTTCTTCGATCTACTT
130 TCTGATGTCTTCGATCTACTTCACGCCAATACATGAAGACAAAATCTGCTATCTTCAATCCACTT
* *
18380160 CGCCACCAGTATGGGAAAAC
195 CGCCACCAATATAGGAAAAC
* * * * *
18380180 AAGATCTG-CATTTTTGATCCACTTCGCTACCAATA-TAGGAAGACAGGATCTGCTATCTTTGAT
1 AAGATCTGTCATCTTCGATCCACTTCAC-ACCAATACTA--AAGACAAGATCTACTATCTTTGAT
18380243 CTACTTC
63 CTACTTC
18380250 ACGCCAATAC
Statistics
Matches: 245, Mismatches: 35, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
213 2 0.01
214 14 0.06
215 135 0.55
216 11 0.04
218 1 0.00
221 1 0.00
222 4 0.02
223 76 0.31
224 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (214 bp):
AAGATCTGTCATCTTCGATCCACTTCACACCAATACTAAAGACAAGATCTACTATCTTTGATCTA
CTTCGCCACCAATATGGGAAGACAAGATCTTCGATCCACTTCCTACCAATATAGGAAGACAAGAT
CTGATGTCTTCGATCTACTTCACGCCAATACATGAAGACAAAATCTGCTATCTTCAATCCACTTC
GCCACCAATATAGGAAAAC
Found at i:18383346 original size:16 final size:14
Alignment explanation
Indices: 18383322--18383361 Score: 53
Period size: 16 Copynumber: 2.7 Consensus size: 14
18383312 CTTTCACTAA
*
18383322 TATAGATATATACTT
1 TATATATATATA-TT
18383337 GTATATATATATATT
1 -TATATATATATATT
18383352 TATATATATA
1 TATATATATA
18383362 GTTCTTATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 10 0.43
15 2 0.09
16 11 0.48
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (14 bp):
TATATATATATATT
Found at i:18389187 original size:17 final size:17
Alignment explanation
Indices: 18389165--18389199 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
18389155 ATATTAGTTT
*
18389165 TAAAAATATAAATGTACA
1 TAAAAA-ATAAATATACA
18389183 TAAAAAATAAATATACA
1 TAAAAAATAAATATACA
18389200 AATATACATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.66, C:0.06, G:0.03, T:0.26
Consensus pattern (17 bp):
TAAAAAATAAATATACA
Found at i:18389244 original size:3 final size:3
Alignment explanation
Indices: 18389236--18389295 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
18389226 TGCATGCATT
18389236 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
18389284 TAA TAA TAA TAA
1 TAA TAA TAA TAA
18389296 ATAACAATTT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:18391280 original size:113 final size:113
Alignment explanation
Indices: 18391106--18391675 Score: 516
Period size: 114 Copynumber: 5.0 Consensus size: 113
18391096 AAAATAAGAA
* ** * *
18391106 TTAGCGGCGTTTTCT-AGAAAGCACTGC-AAAAACCTAAGCCGAACGACGTCGTTTATC-GAGCT
1 TTAGCGGCGTTTT-TGAGAAAGCGCCCCAAAAAACCTAAGCCCAACGACGCCGTTT-TCTGAGCT
* * * * * *
18391168 TTTGGGGATTTAGCGGTGTTTTTAATAAAGCGCTGCTAATGTTCAGGGCT
64 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGAT
*
18391218 TTAGCGGCGTTTTTGAGAAAGCGCCCCAAAAAACCTAATCCCAACGACGCCGTTTTCTGAGCTTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCCCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTT
* * * * * * *
18391283 CGAGTGA-TTAGTGGCGTTTTTAATAACA-CGCTGCAAATGCTTAGGGCT
66 CG-GGGATTTAGCGGCGTTTTTAAGAA-AGCGCCGCTAATGCTCAGGGAT
* * ** * *
18391331 TTAGCAGCATTTTTGA-AAGAGCGCTGCAAGAAAACCTAAGCACAACGACACCG-TTTCTGAGCT
1 TTAGCGGCGTTTTTGAGAA-AGCGCCCCAA-AAAACCTAAGCCCAACGACGCCGTTTTCTGAGC-
* *
18391394 TTTCGGGGATTTAGCGTCGTTTCTAA-AGAAGCGCCGCTAATG--CAGGGAT
63 TTTCGGGGATTTAGCGGCGTTTTTAAGA-AAGCGCCGCTAATGCTCAGGGAT
* * * * *
18391443 TTAGCGGCGTTTTTG-GAATAGCGCCGCAAAAAAAAAACTAAGCCCAACGGCACCGTTTTCTGTG
1 TTAGCGGCGTTTTTGAGAA-AGCGCC-C--CAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAG
* *
18391507 CTTTCGGGGATTTAGCGGCGTTTTTAAGGATGCGCCGCTAATGCTCAGGGAT
62 CTTTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGAT
* ** * * * ** *
18391559 TTAGCGGCGTTTTAG-GTGTAGTGCCGCAAAAAAAACTAAGCCCAACGGTGCCGTTTTCTGTGCT
1 TTAGCGGCGTTTTTGAG-AAAGCGCC-CCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCT
* * *
18391623 TTCGAGGATTTAGCGGCATTTTTAGGAAAGCGCCGCTAATGCTCAGGGAT
64 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGAT
18391673 TTA
1 TTA
18391676 AAATAATTTA
Statistics
Matches: 385, Mismatches: 53, Indels: 38
0.81 0.11 0.08
Matches are distributed among these distances:
111 1 0.00
112 51 0.13
113 102 0.26
114 192 0.50
115 10 0.03
116 29 0.08
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (113 bp):
TTAGCGGCGTTTTTGAGAAAGCGCCCCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTT
CGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGAT
Found at i:18391937 original size:9 final size:8
Alignment explanation
Indices: 18391909--18391965 Score: 66
Period size: 7 Copynumber: 7.1 Consensus size: 8
18391899 TGAGATTTAA
18391909 GGTTTAGG
1 GGTTTAGG
18391917 GG-TTAGGG
1 GGTTTA-GG
18391925 GGATTTAGG
1 GG-TTTAGG
18391934 GGATTTAGG
1 GG-TTTAGG
18391943 GG-TTAGG
1 GGTTTAGG
18391950 GGTTTA-G
1 GGTTTAGG
18391957 GGTTTAGG
1 GGTTTAGG
18391965 G
1 G
18391966 TTTCAATAGT
Statistics
Matches: 44, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
7 17 0.39
8 11 0.25
9 13 0.30
10 3 0.07
ACGTcount: A:0.16, C:0.00, G:0.51, T:0.33
Consensus pattern (8 bp):
GGTTTAGG
Found at i:18391942 original size:26 final size:22
Alignment explanation
Indices: 18391910--18391965 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 22
18391900 GAGATTTAAG
18391910 GTTTAGGGGTTAGGGGGATTTAGGG
1 GTTTAGGGGTTA-GGGG-TTTA-GG
18391935 GATTTAGGGGTTAGGGGTTTAGG
1 G-TTTAGGGGTTAGGGGTTTAGG
18391958 GTTTAGGG
1 GTTTAGGG
18391966 TTTCAATAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
22 7 0.23
23 3 0.10
24 4 0.13
25 5 0.17
26 11 0.37
ACGTcount: A:0.16, C:0.00, G:0.50, T:0.34
Consensus pattern (22 bp):
GTTTAGGGGTTAGGGGTTTAGG
Found at i:18391957 original size:15 final size:16
Alignment explanation
Indices: 18391929--18391965 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
18391919 TTAGGGGGAT
18391929 TTAGGGGATTTAGGGG
1 TTAGGGGATTTAGGGG
*
18391945 TTAGGGG-TTTAGGGT
1 TTAGGGGATTTAGGGG
18391960 TTAGGG
1 TTAGGG
18391966 TTTCAATAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.16, C:0.00, G:0.49, T:0.35
Consensus pattern (16 bp):
TTAGGGGATTTAGGGG
Found at i:18394601 original size:31 final size:31
Alignment explanation
Indices: 18394563--18394646 Score: 134
Period size: 31 Copynumber: 2.7 Consensus size: 31
18394553 TTGGATTTTA
*
18394563 ATTGGTTTTTGCAGCTAAGATGGTACCTTCT
1 ATTGGTTTTTGCTGCTAAGATGGTACCTTCT
18394594 ATTGGTTTTTGCTGCTAAGATGGTACCTTCT
1 ATTGGTTTTTGCTGCTAAGATGGTACCTTCT
* *
18394625 ATTGATTTCTGCTGCTAA-ATGG
1 ATTGGTTTTTGCTGCTAAGATGG
18394647 CTAAGAGCTC
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
30 4 0.08
31 46 0.92
ACGTcount: A:0.19, C:0.15, G:0.23, T:0.43
Consensus pattern (31 bp):
ATTGGTTTTTGCTGCTAAGATGGTACCTTCT
Found at i:18395481 original size:13 final size:13
Alignment explanation
Indices: 18395449--18395482 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
18395439 TCTTAATAAT
18395449 AATATTA-TATTA
1 AATATTATTATTA
18395461 AA-ATTATTATTA
1 AATATTATTATTA
18395473 AATATTATTA
1 AATATTATTA
18395483 ATAATTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 4 0.20
12 9 0.45
13 7 0.35
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
AATATTATTATTA
Found at i:18395617 original size:26 final size:25
Alignment explanation
Indices: 18395588--18395636 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
18395578 ATTTTTATTT
*
18395588 TTATTAAAATATATTTAACAATAATC
1 TTATTAAAATATA-ATAACAATAATC
*
18395614 TTATTAAAATTTAATAACAATAA
1 TTATTAAAATATAATAACAATAA
18395637 CCTGACACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (25 bp):
TTATTAAAATATAATAACAATAATC
Found at i:18395674 original size:9 final size:9
Alignment explanation
Indices: 18395652--18395933 Score: 259
Period size: 9 Copynumber: 32.4 Consensus size: 9
18395642 CACTTGTACA
*
18395652 TTACAAAAC
1 TTACATAAC
18395661 TTACATAAC
1 TTACATAAC
*
18395670 CTACATAAC
1 TTACATAAC
18395679 TTACATAA-
1 TTACATAAC
*
18395687 -TACAAAAC
1 TTACATAAC
18395695 TTACATAAC
1 TTACATAAC
18395704 TTACATAAC
1 TTACATAAC
18395713 TTACATAA-
1 TTACATAAC
*
18395721 -TACAAAAC
1 TTACATAAC
*
18395729 TCACATAAC
1 TTACATAAC
* *
18395738 TTAAATATC
1 TTACATAAC
*
18395747 TTACACAAC
1 TTACATAAC
18395756 TTACATAAC
1 TTACATAAC
*
18395765 CTACATAA-
1 TTACATAAC
18395773 -TACATTTAAC
1 TTACA--TAAC
18395783 TTACATAAC
1 TTACATAAC
18395792 TTACATAATAC
1 TTACAT-A-AC
*
18395803 ATA-ATAAC
1 TTACATAAC
18395811 TTAC--AAC
1 TTACATAAC
18395818 TTACATAAC
1 TTACATAAC
* *
18395827 ATACATTAC
1 TTACATAAC
**
18395836 TTTGATAAC
1 TTACATAAC
18395845 TTACATAAC
1 TTACATAAC
18395854 TTACATAA-
1 TTACATAAC
18395862 -TACATAAC
1 TTACATAAC
*
18395870 TTACATAGC
1 TTACATAAC
*
18395879 TTACTTAA-
1 TTACATAAC
18395887 -TACATAAC
1 TTACATAAC
18395895 TTACATAAC
1 TTACATAAC
*
18395904 TTATAT-AC
1 TTACATAAC
*
18395912 GTACATAAC
1 TTACATAAC
*
18395921 TTACATAAT
1 TTACATAAC
18395930 TTAC
1 TTAC
18395934 TTAATACATA
Statistics
Matches: 220, Mismatches: 35, Indels: 36
0.76 0.12 0.12
Matches are distributed among these distances:
7 36 0.16
8 10 0.05
9 163 0.74
10 3 0.01
11 8 0.04
ACGTcount: A:0.46, C:0.21, G:0.01, T:0.32
Consensus pattern (9 bp):
TTACATAAC
Found at i:18395696 original size:34 final size:34
Alignment explanation
Indices: 18395653--18395929 Score: 228
Period size: 34 Copynumber: 8.0 Consensus size: 34
18395643 ACTTGTACAT
*
18395653 TACAAAACTTACATAACCTACATAACTTACATAA
1 TACAAAACTTACATAACTTACATAACTTACATAA
18395687 TACAAAACTTACATAACTTACATAACTTACATAA
1 TACAAAACTTACATAACTTACATAACTTACATAA
* * * *
18395721 TACAAAACTCACATAACTTAAATATCTTACACAA
1 TACAAAACTTACATAACTTACATAACTTACATAA
* *
18395755 CTTACATAACCTACATAA--TACATTTAACTTACATAA
1 --TACAAAACTTACATAACTTACA--TAACTTACATAA
*
18395791 CTTACATAATACATA-ATAACTTAC--AACTTACATAACA
1 --TACA-AA-ACTTACATAACTTACATAACTTACAT-A-A
** **
18395828 TACATTACTTTGATAACTTACATAACTTACATAA
1 TACAAAACTTACATAACTTACATAACTTACATAA
* * *
18395862 TACATAACTTACATAGCTTACTTAA--TACATAA
1 TACAAAACTTACATAACTTACATAACTTACATAA
* * *
18395894 CTTACATAACTTATAT-ACGTACATAACTTACATAA
1 --TACAAAACTTACATAACTTACATAACTTACATAA
18395929 T
1 T
18395930 TTACTTAATA
Statistics
Matches: 200, Mismatches: 26, Indels: 35
0.77 0.10 0.13
Matches are distributed among these distances:
32 7 0.04
33 11 0.05
34 109 0.55
35 21 0.10
36 39 0.19
37 6 0.03
38 4 0.02
39 3 0.01
ACGTcount: A:0.46, C:0.21, G:0.01, T:0.32
Consensus pattern (34 bp):
TACAAAACTTACATAACTTACATAACTTACATAA
Found at i:18395699 original size:25 final size:25
Alignment explanation
Indices: 18395662--18395711 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
18395652 TTACAAAACT
*
18395662 TACATAACCTACATAACTTACATAA
1 TACAAAACCTACATAACTTACATAA
*
18395687 TACAAAACTTACATAACTTACATAA
1 TACAAAACCTACATAACTTACATAA
18395712 CTTACATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.50, C:0.22, G:0.00, T:0.28
Consensus pattern (25 bp):
TACAAAACCTACATAACTTACATAA
Found at i:18395705 original size:43 final size:43
Alignment explanation
Indices: 18395652--18395933 Score: 263
Period size: 43 Copynumber: 6.5 Consensus size: 43
18395642 CACTTGTACA
* * *
18395652 TTACAAAACTTACATAACCTACATAACTTACATAATACAAAAC
1 TTACATAACTTACATAACTTACATAACTTACATAATACATAAC
*
18395695 TTACATAACTTACATAACTTACATAA--TACAAAACTCACATAAC
1 TTACATAACTTACATAACTTACATAACTTACATAA-T-ACATAAC
* * * *
18395738 TTAAATATCTTACACAACTTACATAACCTACATAATACATTTAAC
1 TTACATAACTTACATAACTTACATAACTTACATAATACA--TAAC
* *
18395783 TTACATAACTTACATAATACATA-ATAACTTACA-ACTTACATAAC
1 TTACATAACTTACAT-A-ACTTACATAACTTACATA-ATACATAAC
* * **
18395827 ATACATTACTTTGATAACTTACATAACTTACATAATACATAAC
1 TTACATAACTTACATAACTTACATAACTTACATAATACATAAC
* * *
18395870 TTACATAGCTTACTTAA--TACATAACTTACATAACT-TATATAC
1 TTACATAACTTACATAACTTACATAACTTACATAA-TACATA-AC
* *
18395912 GTACATAACTTACATAATTTAC
1 TTACATAACTTACATAACTTAC
18395934 TTAATACATA
Statistics
Matches: 194, Mismatches: 30, Indels: 29
0.77 0.12 0.11
Matches are distributed among these distances:
41 25 0.13
42 22 0.11
43 86 0.44
44 20 0.10
45 23 0.12
46 14 0.07
47 4 0.02
ACGTcount: A:0.46, C:0.21, G:0.01, T:0.32
Consensus pattern (43 bp):
TTACATAACTTACATAACTTACATAACTTACATAATACATAAC
Found at i:18395825 original size:62 final size:61
Alignment explanation
Indices: 18395751--18395868 Score: 184
Period size: 62 Copynumber: 1.9 Consensus size: 61
18395741 AATATCTTAC
*
18395751 ACAACTTACATAACCTACATAATACATT-TAACTTACATAACTTACATAATACATAATAACTT
1 ACAACTTACATAACATACAT--TACATTATAACTTACATAACTTACATAATACATAATAACTT
*
18395813 ACAACTTACATAACATACATTACTTTGATAACTTACATAACTTACATAATACATAA
1 ACAACTTACATAACATACATTACATT-ATAACTTACATAACTTACATAATACATAA
18395869 CTTACATAGC
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
60 5 0.10
62 47 0.90
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.32
Consensus pattern (61 bp):
ACAACTTACATAACATACATTACATTATAACTTACATAACTTACATAATACATAATAACTT
Found at i:18397894 original size:21 final size:21
Alignment explanation
Indices: 18397870--18397927 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
18397860 CAGAGGCGGT
*
18397870 AGCGAGGGAAGCA-ACGACTGC
1 AGCGAGAGAAGCAGA-GACTGC
*
18397891 AGCGAGAGAAGCAGAGGCTGC
1 AGCGAGAGAAGCAGAGACTGC
*
18397912 AGCGAGAGAAGTAGAG
1 AGCGAGAGAAGCAGAG
18397928 CAGAGCAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
21 32 0.97
22 1 0.03
ACGTcount: A:0.36, C:0.17, G:0.41, T:0.05
Consensus pattern (21 bp):
AGCGAGAGAAGCAGAGACTGC
Found at i:18398277 original size:42 final size:42
Alignment explanation
Indices: 18398229--18398355 Score: 218
Period size: 42 Copynumber: 3.0 Consensus size: 42
18398219 CCCAAAAATA
*
18398229 GCTTAGAAAAAAAAGCCGCTAAAGACCATGTTCTTTAGCGGC
1 GCTTAGAAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGC
*
18398271 GCTTAGAAAGAAACGCCGCTAAAGACCATGTTCTTTAGCGGC
1 GCTTAGAAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGC
* *
18398313 GCTTAGAGAAAAACGCCACTAAAGACCATGTTCTTTAGCGGC
1 GCTTAGAAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGC
18398355 G
1 G
18398356 TTTTTGTTTG
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 80 1.00
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.21
Consensus pattern (42 bp):
GCTTAGAAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGC
Found at i:18398483 original size:22 final size:22
Alignment explanation
Indices: 18398452--18398495 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
18398442 TAGTGGCGTT
* *
18398452 AAAAAGCGCCGCTAAAGGCCTA
1 AAAAAACGCCGCTAAAGACCTA
18398474 AAAAAACGCCGCTAAAGACCTA
1 AAAAAACGCCGCTAAAGACCTA
18398496 TTTTGGTGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.45, C:0.27, G:0.18, T:0.09
Consensus pattern (22 bp):
AAAAAACGCCGCTAAAGACCTA
Found at i:18398819 original size:10 final size:8
Alignment explanation
Indices: 18398793--18398817 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
18398783 AGCTACAAAT
18398793 GTAAGAGA
1 GTAAGAGA
18398801 GTAAGAGA
1 GTAAGAGA
18398809 GTAAGAGA
1 GTAAGAGA
18398817 G
1 G
18398818 AGAGTTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.40, T:0.12
Consensus pattern (8 bp):
GTAAGAGA
Found at i:18399870 original size:125 final size:125
Alignment explanation
Indices: 18399700--18400061 Score: 566
Period size: 125 Copynumber: 2.9 Consensus size: 125
18399690 CCTATAATAT
*
18399700 AAATTGTTATTGCAATATTTGTGGCATTTATGAAAAACGCCACTAATGTATAACCTTTGCGGCAT
1 AAATTGTTATTGCAATATTTGCGGCATTTATGAAAAACGCCACTAATGTATAACCTTTGCGGCAT
* *** *
18399765 TTTCAGTCAAAACGCCACTAAAAACTTAATTTCCTGGAGTGAAACGGTGTCATTTAATTC
66 TTTCAGTCAAAACGCCACTAAAAACTTAATTTCCTGTAGTGAAACGGCACCATTTAAGTC
** *
18399825 AAATTGTTATTGCAATATTTGCGGTGTTTATGAAAAACGCCACTAATGTATAACCTTTGCGGCGT
1 AAATTGTTATTGCAATATTTGCGGCATTTATGAAAAACGCCACTAATGTATAACCTTTGCGGCAT
* * *
18399890 TTTCAGTCAAAATGCCACTAAAAACTTAATTTCCTGTAGTGAAACTGCACCGTTTAAGTC
66 TTTCAGTCAAAACGCCACTAAAAACTTAATTTCCTGTAGTGAAACGGCACCATTTAAGTC
* *
18399950 AAATTGTTATTGCAATATTTGCAGCATTTATGAAAAACACCACTAATGTATAACCTTTGCGG-AG
1 AAATTGTTATTGCAATATTTGCGGCATTTATGAAAAACGCCACTAATGTATAACCTTTGCGGCA-
*
18400014 TTTTCAGTCAAAACGCCACTAAAAACTTAATTTTCTGTAGTG-AACGGC
65 TTTTCAGTCAAAACGCCACTAAAAACTTAATTTCCTGTAGTGAAACGGC
18400062 GCTGTTTTGC
Statistics
Matches: 216, Mismatches: 20, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
124 5 0.02
125 211 0.98
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (125 bp):
AAATTGTTATTGCAATATTTGCGGCATTTATGAAAAACGCCACTAATGTATAACCTTTGCGGCAT
TTTCAGTCAAAACGCCACTAAAAACTTAATTTCCTGTAGTGAAACGGCACCATTTAAGTC
Found at i:18402489 original size:23 final size:22
Alignment explanation
Indices: 18402462--18402506 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
18402452 AAATTAAATC
18402462 TCTAAGATTACAAGATCATATCT
1 TCTAAGATTAC-AGATCATATCT
* *
18402485 TCTAAGATTGCATATCATATCT
1 TCTAAGATTACAGATCATATCT
18402507 AAGATTGCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.38
Consensus pattern (22 bp):
TCTAAGATTACAGATCATATCT
Found at i:18402509 original size:19 final size:19
Alignment explanation
Indices: 18402485--18402521 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
18402475 GATCATATCT
18402485 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
18402504 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
18402522 TGAAGATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:18402529 original size:17 final size:19
Alignment explanation
Indices: 18402488--18402529 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
18402478 CATATCTTCT
*
18402488 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCG
18402507 AAGATTGCATATCAT-T-G
1 AAGATTGCATATCATATCG
18402524 AAGATT
1 AAGATT
18402530 ATGTTTCCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.27
18 1 0.05
19 15 0.68
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (19 bp):
AAGATTGCATATCATATCG
Found at i:18403188 original size:89 final size:88
Alignment explanation
Indices: 18403086--18403343 Score: 318
Period size: 89 Copynumber: 2.9 Consensus size: 88
18403076 CTTCAACCTA
* * * * *
18403086 CTCCACTGCAAACTCAGAGAGGCAAGATTGGTGTTTTCGATCTGCTTCACTGTCAGTACAGGAAG
1 CTCCACTGCAAACTCA-AGAGGAAAGGTTGGTGTTTTCAATCTGCTTCGCTGTCAATACAGGAAG
* * *
18403151 ACAAAATCTGCTATTTTCATTCTG
65 ACAAGATCTGCTATCTTCAGTCTG
* * * * * *
18403175 CTCCGCTGCAAACTCAAGGAGGTAAGGCTAGTGTCTTCAATCTGCTTCGCTGCCAATACAGGAAG
1 CTCCACTGCAAACTCAA-GAGGAAAGGTTGGTGTTTTCAATCTGCTTCGCTGTCAATACAGGAAG
18403240 ACAAGATCTGCTATCTTCAGTCTG
65 ACAAGATCTGCTATCTTCAGTCTG
* * * * *
18403264 TTCCACTGTAAAATCAAGAAGGAAAGGTTGGTGTTTTCAATCTGCTTCGCTGTCAATATAGGAAA
1 CTCCACTGCAAACTCAAG-AGGAAAGGTTGGTGTTTTCAATCTGCTTCGCTGTCAATACAGGAAG
18403329 ACAAGATCTGCTATC
65 ACAAGATCTGCTATC
18403344 GTTAGTTTAC
Statistics
Matches: 143, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
88 2 0.01
89 141 0.99
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (88 bp):
CTCCACTGCAAACTCAAGAGGAAAGGTTGGTGTTTTCAATCTGCTTCGCTGTCAATACAGGAAGA
CAAGATCTGCTATCTTCAGTCTG
Found at i:18403502 original size:43 final size:42
Alignment explanation
Indices: 18403440--18403786 Score: 134
Period size: 44 Copynumber: 7.8 Consensus size: 42
18403430 TCATCATTTT
*
18403440 AATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAGTAGTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAGGATTAGTA-TTC
* * * *
18403483 AATCTGCTCTACTGCAACTTTAGGGAGATAAGATTGGTATTTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAGGATTAGTA--TTC
* * * * *
18403527 AACCTACTCCACTACAACTTTAGGGAGATAAGG-TTTG-ATGT-
1 AATCTGCTCCACTGCAACTTCAGGGAGAT-AGGATTAGTAT-TC
* * * * *
18403568 GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTTA-TGATTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAGGA--TTAGT-ATTC
* *
18403612 ATAGCTTTGATCTATTCCACTGCAATCTTCAGGGA-A-ACGAGATTTGCTATCTTC
1 A-A--TCTG--C---TCCACTGCAA-CTTCAGGGAGATA-G-GATTAG-TA--TTC
* * * *
18403666 AGTTTGCTCCACTACAACTTCAGGGAGATAAGACTT--TACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAGGA-TTAGTA-TTC
* * ** *
18403708 AATCTGCTCCACTACAACTTTAGGGAGATAGGATTATTGGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAGGATTA--GTATTC
* * * *
18403752 AATTTGCTCCACTGCAACTTTAGAGAGATAAGATT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAGGATT
18403787 TGCCATGATC
Statistics
Matches: 231, Mismatches: 42, Indels: 61
0.69 0.13 0.18
Matches are distributed among these distances:
40 2 0.01
41 25 0.11
42 34 0.15
43 40 0.17
44 66 0.29
45 14 0.06
46 12 0.05
47 4 0.02
49 2 0.01
51 7 0.03
52 11 0.05
53 11 0.05
54 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (42 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAGGATTAGTATTC
Found at i:18403514 original size:87 final size:85
Alignment explanation
Indices: 18403404--18403601 Score: 208
Period size: 87 Copynumber: 2.3 Consensus size: 85
18403394 TTAATCCGAC
* * *
18403404 CTACTGCAACTTTAGAGG-TATAAGATTCATCATTTT-AATCC-GCTCCACTGCAACTTCAGGGA
1 CTACTGCAACTTTAG-GGAGATAAGATTCAT-ATTTTCAA-CCTACTCCACTACAACTTCAGGGA
18403466 GAT-AGGATTAG-TAGTTCAATCTGCT
63 GATAAGG-TTAGAT-G-T-AATCTGCT
** *
18403491 CTACTGCAACTTTAGGGAGATAAGATTGGTATTTTCAACCTACTCCACTACAACTTTAGGGAGAT
1 CTACTGCAACTTTAGGGAGATAAGATTCATATTTTCAACCTACTCCACTACAACTTCAGGGAGAT
* *
18403556 AAGGTTTGATGTGATCTGCT
66 AAGGTTAGATGTAATCTGCT
* *
18403576 CTACTGCAACTTCAGAGAGATAAGAT
1 CTACTGCAACTTTAGGGAGATAAGAT
18403602 CTTATGATTT
Statistics
Matches: 96, Mismatches: 10, Indels: 12
0.81 0.08 0.10
Matches are distributed among these distances:
85 31 0.32
86 10 0.10
87 51 0.53
88 4 0.04
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (85 bp):
CTACTGCAACTTTAGGGAGATAAGATTCATATTTTCAACCTACTCCACTACAACTTCAGGGAGAT
AAGGTTAGATGTAATCTGCT
Found at i:18403545 original size:44 final size:43
Alignment explanation
Indices: 18403446--18403558 Score: 145
Period size: 44 Copynumber: 2.6 Consensus size: 43
18403436 TTTTAATCCG
* * * *
18403446 CTCCACTGCAACTTCAGGGAGATAGGATTAGTAGTTCAATCTG
1 CTCCACTGCAACTTTAGGGAGATAAGATTAGTAGTTCAACCTA
* * *
18403489 CTCTACTGCAACTTTAGGGAGATAAGATTGGTATTTTCAACCTA
1 CTCCACTGCAACTTTAGGGAGATAAGATTAGTA-GTTCAACCTA
*
18403533 CTCCACTACAACTTTAGGGAGATAAG
1 CTCCACTGCAACTTTAGGGAGATAAG
18403559 GTTTGATGTG
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
43 29 0.48
44 31 0.52
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.29
Consensus pattern (43 bp):
CTCCACTGCAACTTTAGGGAGATAAGATTAGTAGTTCAACCTA
Found at i:18403687 original size:45 final size:42
Alignment explanation
Indices: 18403627--18403733 Score: 106
Period size: 42 Copynumber: 2.5 Consensus size: 42
18403617 TTTGATCTAT
* * * * *
18403627 TCCACTGCAATCTTCAGGGAAACGAGATTTGCTATCTTCAGTTTGC
1 TCCACTACAA-CTTCAGGGAAACAAGACTT--TA-CTTCAATCTGC
* *
18403673 TCCACTACAACTTCAGGGAGATAAGACTTTACTTCAATCTGC
1 TCCACTACAACTTCAGGGAAACAAGACTTTACTTCAATCTGC
*
18403715 TCCACTACAACTTTAGGGA
1 TCCACTACAACTTCAGGGA
18403734 GATAGGATTA
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 27 0.51
43 2 0.04
45 15 0.28
46 9 0.17
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (42 bp):
TCCACTACAACTTCAGGGAAACAAGACTTTACTTCAATCTGC
Found at i:18403716 original size:42 final size:44
Alignment explanation
Indices: 18403670--18403784 Score: 144
Period size: 44 Copynumber: 2.7 Consensus size: 44
18403660 ATCTTCAGTT
*
18403670 TGCTCCACTACAACTTCAGGGAGATAAGACT-TT-ACTTCAATC
1 TGCTCCACTACAACTTTAGGGAGATAAGACTATTGACTTCAATC
* * * * *
18403712 TGCTCCACTACAACTTTAGGGAGATAGGATTATTGGCTTTAATT
1 TGCTCCACTACAACTTTAGGGAGATAAGACTATTGACTTCAATC
* *
18403756 TGCTCCACTGCAACTTTAGAGAGATAAGA
1 TGCTCCACTACAACTTTAGGGAGATAAGA
18403785 TTTGCCATGA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 28 0.45
43 2 0.03
44 32 0.52
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (44 bp):
TGCTCCACTACAACTTTAGGGAGATAAGACTATTGACTTCAATC
Found at i:18403728 original size:225 final size:224
Alignment explanation
Indices: 18403440--18403924 Score: 573
Period size: 225 Copynumber: 2.2 Consensus size: 224
18403430 TCATCATTTT
* * * * *
18403440 AATCCGCTCCACTGCAACTTCAGGGAGATAGGA-TTAGTAGTTCAATCTGCTCTACTGCAACTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTA-TACTTCAATCTGCTCCACTACAACTTT
* * * * **
18403504 AGGGAGATAAGATTGGT-ATTTTCAACCTACTCCACTACAACTTTAGGGAGATAAGGTTTGATGT
65 AGGGAGATAAGATTAGTGACTTT-AACCTACTCCACTACAACTTTAGAGAGATAAGATTTGACAT
* *
18403568 GATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTTATGATTTATAGCTTTGATCTATTCCACT
129 GATCTACTCTACTGCAACTTCAGAGAGATAAGAT-TTATGATTTATAGCTTTAATCTATTCCACT
* * *
18403633 GCAATCTTCAGGGAAACGAGATTTGCTATCTTC
193 G-AAGCTTCAGGAAAACGAGATTCGCTATCTTC
* * *
18403666 AGTTTGCTCCACTACAACTTCAGGGAGATAAGACTT-TACTTCAATCTGCTCCACTACAACTTTA
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTATACTTCAATCTGCTCCACTACAACTTTA
* * * ** * * *
18403730 GGGAGATAGGATTATTGGCTTTAATTTGCTCCACTGCAACTTTAGAGAGATAAGATTTGCCATGA
66 GGGAGATAAGATTAGTGACTTTAACCTACTCCACTACAACTTTAGAGAGATAAGATTTGACATGA
* * * * *
18403795 TCTACTCTATTGCAACTTCAGAGAGATAAGATTTGTGATTTATAGCTTTAATCTGTTCCATTGTA
131 TCTACTCTACTGCAACTTCAGAGAGATAAGATTTATGATTTATAGCTTTAATCTATTCCACTGAA
*
18403860 GCTTCAGGAAAATGAGATTCGCTATCTTC
196 GCTTCAGGAAAACGAGATTCGCTATCTTC
* * *
18403889 AATCTAC-CCTATTGCAACTTCAGGGGGATAAGACTT
1 AATCTGCTCC-ACTGCAACTTCAGGGAGATAAGACTT
18403925 GCTTTCTTCA
Statistics
Matches: 217, Mismatches: 39, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
222 2 0.01
223 53 0.24
224 27 0.12
225 102 0.47
226 31 0.14
227 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.33
Consensus pattern (224 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTATACTTCAATCTGCTCCACTACAACTTTA
GGGAGATAAGATTAGTGACTTTAACCTACTCCACTACAACTTTAGAGAGATAAGATTTGACATGA
TCTACTCTACTGCAACTTCAGAGAGATAAGATTTATGATTTATAGCTTTAATCTATTCCACTGAA
GCTTCAGGAAAACGAGATTCGCTATCTTC
Found at i:18403770 original size:44 final size:42
Alignment explanation
Indices: 18403662--18403787 Score: 153
Period size: 42 Copynumber: 3.0 Consensus size: 42
18403652 GATTTGCTAT
* * *
18403662 CTTCAGTTTGCTCCACTACAACTTCAGGGAGATAAGACTTTA
1 CTTCAATTTGCTCCACTACAACTTTAGGGAGATAAGATTTTA
* * *
18403704 CTTCAATCTGCTCCACTACAACTTTAGGGAGATAGGATTATTGG
1 CTTCAATTTGCTCCACTACAACTTTAGGGAGATAAGATT-TT-A
* * *
18403748 CTTTAATTTGCTCCACTGCAACTTTAGAGAGATAAGATTT
1 CTTCAATTTGCTCCACTACAACTTTAGGGAGATAAGATTT
18403788 GCCATGATCT
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
42 34 0.48
43 3 0.04
44 34 0.48
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (42 bp):
CTTCAATTTGCTCCACTACAACTTTAGGGAGATAAGATTTTA
Found at i:18403990 original size:44 final size:44
Alignment explanation
Indices: 18403935--18404388 Score: 296
Period size: 44 Copynumber: 10.2 Consensus size: 44
18403925 GCTTTCTTCA
* * *
18403935 ATAAGACTTGTAACTTTAATCCGCTCCACTGTAACTTCAAGGAG
1 ATAAGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAAGGAG
** *
18403979 ATAAGATTTGTAACTTTAATCTGCTCCACTATAACTTCAGGGAG
1 ATAAGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAAGGAG
** *
18404023 ATAAGATTAT-TGGCTTTAATCTGCTCCACTGCAACTAT-AGGGAG
1 ATAAGATT-TGTAACTTTAATCTGCTCCACTGCAACT-TCAAGGAG
* * ** * * * *
18404067 ATAAGATTTGCCATCTGCAGTCTGCCCCACTGTAACTTCAAGGGG
1 ATAAGATTTG-TAACTTTAATCTGCTCCACTGCAACTTCAAGGAG
* ** * * * *
18404112 ATAAGACTTGTTTTCTTCAGTCTACTCCATTGCAACTTC-AGCGAG
1 ATAAGATTTG-TAACTTTAATCTGCTCCACTGCAACTTCAAG-GAG
* *
18404157 ATAAGACTTGTAACTTTAATC-CCTCCACTGCAACTTC-AGTGAG
1 ATAAGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAAG-GAG
* ** * *
18404200 ATAGGATTAT-TGGCTTTAATATGCTCCACTGCAACTTCATGGAG
1 ATAAGATT-TGTAACTTTAATCTGCTCCACTGCAACTTCAAGGAG
* * * * * *
18404244 ATAAGATTTGCCATCTTCAGTCTGCCCCACTGCAACTTC-AGGGG
1 ATAAGATTTG-TAACTTTAATCTGCTCCACTGCAACTTCAAGGAG
* ** * * * * * *
18404288 AATAAGACTTGCTTTCTTCAGTCTGATCCACTGTAACTTTAGGGAG
1 -ATAAGATTTG-TAACTTTAATCTGCTCCACTGCAACTTCAAGGAG
* * *
18404334 ATAAGACTTGTAACTTTAATCCGCTCCATTGCAA-TCTC-AGAGAG
1 ATAAGATTTGTAACTTTAATCTGCTCCACTGCAACT-TCAAG-GAG
18404378 ATAAGATTTGT
1 ATAAGATTTGT
18404389 GGTTTTACTG
Statistics
Matches: 323, Mismatches: 72, Indels: 30
0.76 0.17 0.07
Matches are distributed among these distances:
43 37 0.11
44 153 0.47
45 130 0.40
46 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (44 bp):
ATAAGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAAGGAG
Found at i:18404133 original size:45 final size:44
Alignment explanation
Indices: 18403935--18404367 Score: 254
Period size: 45 Copynumber: 9.8 Consensus size: 44
18403925 GCTTTCTTCA
* * * * *
18403935 ATAAGACTTG-TAACTTTAATCCGCTCCACTGTAACTTCAAGGAG
1 ATAAGACTTGTTATCTTCAATCTGCTCCACTGCAACTTC-AGGGG
* * * **
18403979 ATAAGATTTG-TAACTTTAATCTGCTCCACTATAACTTCAGGGAG
1 ATAAGACTTGTTATCTTCAATCTGCTCCACTGCAACTTCAGGG-G
* ** *
18404023 ATAAGA-TTATTGGCTTTAATCTGCTCCACTGCAACTAT-AGGGAG
1 ATAAGACTTGTTATCTTCAATCTGCTCCACTGCAACT-TCAGGG-G
* ** * * * *
18404067 ATAAGATTTGCCATCTGCAGTCTGCCCCACTGTAACTTCAAGGGG
1 ATAAGACTTGTTATCTTCAATCTGCTCCACTGCAACTTC-AGGGG
* * * * *
18404112 ATAAGACTTGTTTTCTTCAGTCTACTCCATTGCAACTTCAGCGAG
1 ATAAGACTTGTTATCTTCAATCTGCTCCACTGCAACTTCAG-GGG
* * * *
18404157 ATAAGACTTG-TAACTTTAATC-CCTCCACTGCAACTTCAGTGAG
1 ATAAGACTTGTTATCTTCAATCTGCTCCACTGCAACTTCAG-GGG
* * ** * * *
18404200 ATAGGA-TTATTGGCTTTAATATGCTCCACTGCAACTTCATGGAG
1 ATAAGACTTGTTATCTTCAATCTGCTCCACTGCAACTTCA-GGGG
* ** * *
18404244 ATAAGATTTGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGGG
1 ATAAGACTTGTTATCTTCAATCTGCTCCACTGCAACTTCAGGGG
* * * *
18404288 AATAAGACTTGCTT-TCTTCAGTCTGATCCACTGTAACTTTAGGGAG
1 -ATAAGACTTG-TTATCTTCAATCTGCTCCACTGCAACTTCAGGG-G
* * * *
18404334 ATAAGACTTG-TAACTTTAATCCGCTCCATTGCAA
1 ATAAGACTTGTTATCTTCAATCTGCTCCACTGCAA
18404368 TCTCAGAGAG
Statistics
Matches: 307, Mismatches: 67, Indels: 30
0.76 0.17 0.07
Matches are distributed among these distances:
42 2 0.01
43 38 0.12
44 128 0.42
45 134 0.44
46 5 0.02
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.32
Consensus pattern (44 bp):
ATAAGACTTGTTATCTTCAATCTGCTCCACTGCAACTTCAGGGG
Found at i:18404231 original size:177 final size:177
Alignment explanation
Indices: 18403958--18404385 Score: 605
Period size: 177 Copynumber: 2.4 Consensus size: 177
18403948 CTTTAATCCG
* * ** *
18403958 CTCCACTGTAACTTCAAGGAGATAAGATTTGTAACTTTAATCTGCTCCACTATAACTTCAGGGAG
1 CTCCACTGTAACTTC-AGGAGATAAGACTTGTAACTTTAATC-CCTCCACTGCAACTTCAGAGAG
*
18404023 ATAAGATTATTGGCTTTAATCTGCTCCACTGCAACTAT-AGGGAGATAAGATTTGCCATCTGCAG
64 ATAAGATTATTGGCTTTAATATGCTCCACTGCAACT-TCAGGGAGATAAGATTTGCCATCTGCAG
* *
18404087 TCTGCCCCACTGTAACTTCAAGGGG-ATAAGACTTGTTTTCTTCAGTCT-A
128 TCTGCCCCACTGCAACTTC-AGGGGAATAAGACTTGCTTTCTTCAGTCTGA
* * *
18404136 CTCCATTGCAACTTCAGCGAGATAAGACTTGTAACTTTAATCCCTCCACTGCAACTTCAGTGAGA
1 CTCCACTGTAACTTCAG-GAGATAAGACTTGTAACTTTAATCCCTCCACTGCAACTTCAGAGAGA
* * *
18404201 TAGGATTATTGGCTTTAATATGCTCCACTGCAACTTCATGGAGATAAGATTTGCCATCTTCAGTC
65 TAAGATTATTGGCTTTAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTGCAGTC
18404266 TGCCCCACTGCAACTTCAGGGGAATAAGACTTGCTTTCTTCAGTCTGA
130 TGCCCCACTGCAACTTCAGGGGAATAAGACTTGCTTTCTTCAGTCTGA
* *
18404314 -TCCACTGTAACTTTAGGGAGATAAGACTTGTAACTTTAATCCGCTCCATTGCAA-TCTCAGAGA
1 CTCCACTGTAACTTCA-GGAGATAAGACTTGTAACTTTAATCC-CTCCACTGCAACT-TCAGAGA
18404377 GATAAGATT
63 GATAAGATT
18404386 TGTGGTTTTA
Statistics
Matches: 224, Mismatches: 19, Indels: 14
0.87 0.07 0.05
Matches are distributed among these distances:
176 6 0.03
177 156 0.70
178 62 0.28
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31
Consensus pattern (177 bp):
CTCCACTGTAACTTCAGGAGATAAGACTTGTAACTTTAATCCCTCCACTGCAACTTCAGAGAGAT
AAGATTATTGGCTTTAATATGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTGCAGTCT
GCCCCACTGCAACTTCAGGGGAATAAGACTTGCTTTCTTCAGTCTGA
Found at i:18404692 original size:24 final size:24
Alignment explanation
Indices: 18404665--18404720 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
18404655 CAAATTTCCC
18404665 CCACTGTAATCTTCAAGGTTCAAA
1 CCACTGTAATCTTCAAGGTTCAAA
* *
18404689 CCACTATAATCTTCAAGGTTCAAT
1 CCACTGTAATCTTCAAGGTTCAAA
*
18404713 CTACTGTA
1 CCACTGTA
18404721 CTTTTGGGAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.32, C:0.25, G:0.11, T:0.32
Consensus pattern (24 bp):
CCACTGTAATCTTCAAGGTTCAAA
Found at i:18411605 original size:79 final size:79
Alignment explanation
Indices: 18411474--18411631 Score: 289
Period size: 79 Copynumber: 2.0 Consensus size: 79
18411464 AAGAACAAGC
* *
18411474 CACAGAAAATAAGAACGCAAGAGAGGGAGAAATTTGAGTGAATGTTCTTAAGAATTATTATTGCT
1 CACAGAAAATAAGAACGCAAGAGAAGGAGAAATTTGAGTGAATGCTCTTAAGAATTATTATTGCT
18411539 CCAAACTCAAGTGT
66 CCAAACTCAAGTGT
*
18411553 CACAGAAAATAAGAACGCAAGAGAAGGAGAAATTTGAGTGAATGCTCTTAAGATTTATTATTGCT
1 CACAGAAAATAAGAACGCAAGAGAAGGAGAAATTTGAGTGAATGCTCTTAAGAATTATTATTGCT
18411618 CCAAACTCAAGTGT
66 CCAAACTCAAGTGT
18411632 TTTACAATGA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 76 1.00
ACGTcount: A:0.41, C:0.13, G:0.21, T:0.25
Consensus pattern (79 bp):
CACAGAAAATAAGAACGCAAGAGAAGGAGAAATTTGAGTGAATGCTCTTAAGAATTATTATTGCT
CCAAACTCAAGTGT
Found at i:18411762 original size:22 final size:21
Alignment explanation
Indices: 18411727--18411784 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
18411717 AAAGGGTATC
* * *
18411727 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAAAT
18411748 TACAAAATCATATCTTCTAAAAT
1 TAC-AAATCATATC-TCTAAAAT
* *
18411771 TGCATATCATATCT
1 TACAAATCATATCT
18411785 AAGATTGCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.43, C:0.17, G:0.03, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAAAT
Found at i:18412723 original size:22 final size:22
Alignment explanation
Indices: 18412696--18412746 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
18412686 CGCTCTAATC
18412696 CTCTCAATTTCCTTCCAAAATT
1 CTCTCAATTTCCTTCCAAAATT
18412718 CTCTCAATTTCCTTCCAAAATT
1 CTCTCAATTTCCTTCCAAAATT
18412740 CTCTCAA
1 CTCTCAA
18412747 ACCCATATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.27, C:0.33, G:0.00, T:0.39
Consensus pattern (22 bp):
CTCTCAATTTCCTTCCAAAATT
Found at i:18412782 original size:51 final size:51
Alignment explanation
Indices: 18412718--18412830 Score: 199
Period size: 51 Copynumber: 2.2 Consensus size: 51
18412708 TTCCAAAATT
18412718 CTCTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTTCAATTTC
1 CTCTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTTCAATTTC
* *
18412769 CTCTCAATTTCCTTCCAAAATTCTCTCACATCCATATTTAATTTCAATTTC
1 CTCTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTTCAATTTC
*
18412820 CCCTCAATTTC
1 CTCTCAATTTC
18412831 ATTTTTGAAA
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 59 1.00
ACGTcount: A:0.27, C:0.31, G:0.00, T:0.42
Consensus pattern (51 bp):
CTCTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTTCAATTTC
Found at i:18412858 original size:10 final size:10
Alignment explanation
Indices: 18412845--18412896 Score: 68
Period size: 10 Copynumber: 5.1 Consensus size: 10
18412835 TTGAAAATAA
18412845 TTTTAAATTT
1 TTTTAAATTT
*
18412855 TTTTATATTT
1 TTTTAAATTT
*
18412865 TTTTAAAATAT
1 TTTT-AAATTT
18412876 TTTTAAATTT
1 TTTTAAATTT
*
18412886 TTTTATATTT
1 TTTTAAATTT
18412896 T
1 T
18412897 CATCAATGGC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
10 28 0.78
11 8 0.22
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (10 bp):
TTTTAAATTT
Found at i:18412873 original size:21 final size:21
Alignment explanation
Indices: 18412845--18412890 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
18412835 TTGAAAATAA
* *
18412845 TTTT-AAATTTTTTTATATTT
1 TTTTAAAATATTTTTAAATTT
18412865 TTTTAAAATATTTTTAAATTT
1 TTTTAAAATATTTTTAAATTT
18412886 TTTTA
1 TTTTA
18412891 TATTTTCATC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTTAAAATATTTTTAAATTT
Found at i:18412873 original size:31 final size:31
Alignment explanation
Indices: 18412832--18412896 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
18412822 CTCAATTTCA
18412832 TTTTTGAAAATAATTTTAAATTTTTTTATAT
1 TTTTTGAAAATAATTTTAAATTTTTTTATAT
* *
18412863 TTTTTTAAAATATTTTTAAATTTTTTTATAT
1 TTTTTGAAAATAATTTTAAATTTTTTTATAT
18412894 TTT
1 TTT
18412897 CATCAATGGC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (31 bp):
TTTTTGAAAATAATTTTAAATTTTTTTATAT
Found at i:18415119 original size:25 final size:25
Alignment explanation
Indices: 18415091--18415159 Score: 102
Period size: 25 Copynumber: 2.7 Consensus size: 25
18415081 TTTAAATTTA
*
18415091 TTATCTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
* *
18415116 TTATTTAATATAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
18415141 TCTATTTGATGTAATAAAA
1 T-TATTTGATGTAATAAAA
18415160 ACCCTAACTT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
25 23 0.61
26 15 0.39
ACGTcount: A:0.46, C:0.03, G:0.12, T:0.39
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:18415178 original size:18 final size:18
Alignment explanation
Indices: 18415155--18415359 Score: 316
Period size: 18 Copynumber: 11.8 Consensus size: 18
18415145 TTTGATGTAA
18415155 TAAAAACCCTAACTTAAT
1 TAAAAACCCTAACTTAAT
*
18415173 TAAAAACCCTAATTTAAT
1 TAAAAACCCTAACTTAAT
18415191 TAAAAACCCTAACTTAAT
1 TAAAAACCCTAACTTAAT
18415209 TAAAAACCCTAACTTAAT
1 TAAAAACCCTAACTTAAT
18415227 TAAAAACCCTAACTTAAT
1 TAAAAACCCTAACTTAAT
18415245 TAAAAACCCTAACTTAAT
1 TAAAAACCCTAACTTAAT
**
18415263 TAAAAACCCTAAC---CC
1 TAAAAACCCTAACTTAAT
18415278 T---AA-CCTAACTTAAT
1 TAAAAACCCTAACTTAAT
18415292 TAAAAACCCTAACTTAAT
1 TAAAAACCCTAACTTAAT
*
18415310 TAAAAACCCTAATTTAAT
1 TAAAAACCCTAACTTAAT
*
18415328 TAAAAACCTTAACTTAAT
1 TAAAAACCCTAACTTAAT
18415346 TAAAAACCCTAACT
1 TAAAAACCCTAACT
18415360 CTAACCTAAT
Statistics
Matches: 170, Mismatches: 10, Indels: 14
0.88 0.05 0.07
Matches are distributed among these distances:
11 6 0.04
12 2 0.01
14 1 0.01
15 1 0.01
17 2 0.01
18 158 0.93
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.28
Consensus pattern (18 bp):
TAAAAACCCTAACTTAAT
Found at i:18415291 original size:83 final size:83
Alignment explanation
Indices: 18415198--18415387 Score: 344
Period size: 83 Copynumber: 2.3 Consensus size: 83
18415188 AATTAAAAAC
18415198 CCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACTTAAT
1 CCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACTTAAT
18415263 TAAAAACCCTAACCCTAA
66 TAAAAACCCTAACCCTAA
* *
18415281 CCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAATTTAATTAAAAACCTTAACTTAAT
1 CCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACTTAAT
*
18415346 TAAAAACCCTAACTCTAA
66 TAAAAACCCTAACCCTAA
*
18415364 CCTAATTTAATTAAAAACCCTAAC
1 CCTAACTTAATTAAAAACCCTAAC
18415388 CCTAACCTAA
Statistics
Matches: 103, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
83 103 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (83 bp):
CCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACTTAATTAAAAACCCTAACTTAAT
TAAAAACCCTAACCCTAA
Found at i:18415375 original size:29 final size:29
Alignment explanation
Indices: 18415332--18415423 Score: 157
Period size: 29 Copynumber: 3.1 Consensus size: 29
18415322 TTTAATTAAA
*
18415332 AACCTTAACTTAATTAAAAACCCTAACTCT
1 AACC-TAACTTAATTAAAAACCCTAACCCT
*
18415362 AACCTAATTTAATTAAAAACCCTAACCCT
1 AACCTAACTTAATTAAAAACCCTAACCCT
18415391 AACCTAACTTAATTAAAAACCCTAACCCT
1 AACCTAACTTAATTAAAAACCCTAACCCT
18415420 AACC
1 AACC
18415424 ATTAACAAAA
Statistics
Matches: 59, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
29 55 0.93
30 4 0.07
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.26
Consensus pattern (29 bp):
AACCTAACTTAATTAAAAACCCTAACCCT
Found at i:18415469 original size:18 final size:18
Alignment explanation
Indices: 18415446--18415480 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
18415436 TTGGGACTTA
18415446 ATAATTTTACATAATTTC
1 ATAATTTTACATAATTTC
*
18415464 ATAATTTTACCTAATTT
1 ATAATTTTACATAATTT
18415481 AATTAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.51
Consensus pattern (18 bp):
ATAATTTTACATAATTTC
Found at i:18415517 original size:10 final size:10
Alignment explanation
Indices: 18415502--18415546 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
18415492 TTTTGGCTTA
18415502 ATAATTTTAC
1 ATAATTTTAC
18415512 ATAATTTTAC
1 ATAATTTTAC
*
18415522 ATAA-TTT-G
1 ATAATTTTAC
18415530 ATAATTTTAC
1 ATAATTTTAC
*
18415540 CTAATTT
1 ATAATTT
18415547 AATTAAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
8 4 0.13
9 6 0.20
10 20 0.67
ACGTcount: A:0.38, C:0.09, G:0.02, T:0.51
Consensus pattern (10 bp):
ATAATTTTAC
Found at i:18415523 original size:66 final size:66
Alignment explanation
Indices: 18415446--18415925 Score: 766
Period size: 66 Copynumber: 7.4 Consensus size: 66
18415436 TTGGGACTTA
* *
18415446 ATAATTTTACATAATTTCATAATTTTACCTAATTTAATTAAAAATTTTTTGGCTTAATAATTTTA
1 ATAATTTTACATAATTTGATAATTTTACCTAATTTAATTAAAATTTTTTTGGCTTAATAATTTTA
18415511 C
66 C
18415512 ATAATTTTACATAATTTGATAATTTTACCTAATTTAATTAAAATTTTTTTGGCTTAATAATTTTA
1 ATAATTTTACATAATTTGATAATTTTACCTAATTTAATTAAAATTTTTTTGGCTTAATAATTTTA
18415577 C
66 C
18415578 ATAATTTTACATAATTTGATAATTTTACCTAATTTAATTAAAATTTTTTTGGCTTAATAATTTTA
1 ATAATTTTACATAATTTGATAATTTTACCTAATTTAATTAAAATTTTTTTGGCTTAATAATTTTA
18415643 C
66 C
*
18415644 ATAATTTTACATAATTTGATAATTTTACCTAATTTAATTAAAATTTTTTTGGATTAATAATTTTA
1 ATAATTTTACATAATTTGATAATTTTACCTAATTTAATTAAAATTTTTTTGGCTTAATAATTTTA
18415709 C
66 C
* ***
18415710 ATAATTTTACATAATTTTG-TGATTTTACCTAATTTAATTAAAAAAATTTTGGC---------TT
1 ATAATTTTACATAA-TTTGATAATTTTACCTAATTTAATTAAAATTTTTTTGGCTTAATAATTTT
18415765 A-
65 AC
***
18415766 ATAATTTTACATAATTTGATAATTTTACCTAATTTAATTAAAAAAATTTTGGCTTAATAATTTTA
1 ATAATTTTACATAATTTGATAATTTTACCTAATTTAATTAAAATTTTTTTGGCTTAATAATTTTA
18415831 C
66 C
*
18415832 ATAATTTTACATAATTTGATAATTTTACCTAATTTAATTAAATTTTTTTTGGCTTAATAATTTTA
1 ATAATTTTACATAATTTGATAATTTTACCTAATTTAATTAAAATTTTTTTGGCTTAATAATTTTA
18415897 C
66 C
*
18415898 ATAATTTTACATAATTTTATAATTTTAC
1 ATAATTTTACATAATTTGATAATTTTAC
18415926 TAAAAATTAA
Statistics
Matches: 388, Mismatches: 14, Indels: 24
0.91 0.03 0.06
Matches are distributed among these distances:
55 4 0.01
56 47 0.12
57 3 0.01
65 3 0.01
66 327 0.84
67 4 0.01
ACGTcount: A:0.38, C:0.07, G:0.04, T:0.51
Consensus pattern (66 bp):
ATAATTTTACATAATTTGATAATTTTACCTAATTTAATTAAAATTTTTTTGGCTTAATAATTTTA
C
Found at i:18415535 original size:18 final size:18
Alignment explanation
Indices: 18415512--18415546 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
18415502 ATAATTTTAC
18415512 ATAATTTTACATAATTTG
1 ATAATTTTACATAATTTG
*
18415530 ATAATTTTACCTAATTT
1 ATAATTTTACATAATTT
18415547 AATTAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.09, G:0.03, T:0.51
Consensus pattern (18 bp):
ATAATTTTACATAATTTG
Found at i:18415572 original size:38 final size:37
Alignment explanation
Indices: 18415530--18415716 Score: 140
Period size: 38 Copynumber: 5.5 Consensus size: 37
18415520 ACATAATTTG
*
18415530 ATAATTTTACCTAATTTAATTAAAATTTTTTTGGCTTA
1 ATAATTTTACATAATTTAATTAAAATTTTTTTGG-TTA
* **
18415568 ATAATTTTACATAA-TT--TT-ACA-TAATTT-G---
1 ATAATTTTACATAATTTAATTAAAATTTTTTTGGTTA
*
18415596 ATAATTTTACCTAATTTAATTAAAATTTTTTTGGCTTA
1 ATAATTTTACATAATTTAATTAAAATTTTTTTGG-TTA
* **
18415634 ATAATTTTACATAA-TT--TT-ACA-TAATTT-G---
1 ATAATTTTACATAATTTAATTAAAATTTTTTTGGTTA
*
18415662 ATAATTTTACCTAATTTAATTAAAATTTTTTTGGATTA
1 ATAATTTTACATAATTTAATTAAAATTTTTTTGG-TTA
18415700 ATAATTTTACATAATTT
1 ATAATTTTACATAATTT
18415717 TACATAATTT
Statistics
Matches: 112, Mismatches: 17, Indels: 40
0.66 0.10 0.24
Matches are distributed among these distances:
28 26 0.23
29 4 0.04
31 4 0.04
32 6 0.05
33 16 0.14
34 6 0.05
35 4 0.04
37 4 0.04
38 42 0.38
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.52
Consensus pattern (37 bp):
ATAATTTTACATAATTTAATTAAAATTTTTTTGGTTA
Found at i:18415583 original size:10 final size:10
Alignment explanation
Indices: 18415568--18415612 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
18415558 TTTTGGCTTA
18415568 ATAATTTTAC
1 ATAATTTTAC
18415578 ATAATTTTAC
1 ATAATTTTAC
*
18415588 ATAA-TTT-G
1 ATAATTTTAC
18415596 ATAATTTTAC
1 ATAATTTTAC
*
18415606 CTAATTT
1 ATAATTT
18415613 AATTAAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
8 4 0.13
9 6 0.20
10 20 0.67
ACGTcount: A:0.38, C:0.09, G:0.02, T:0.51
Consensus pattern (10 bp):
ATAATTTTAC
Found at i:18415601 original size:18 final size:18
Alignment explanation
Indices: 18415578--18415612 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
18415568 ATAATTTTAC
18415578 ATAATTTTACATAATTTG
1 ATAATTTTACATAATTTG
*
18415596 ATAATTTTACCTAATTT
1 ATAATTTTACATAATTT
18415613 AATTAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.09, G:0.03, T:0.51
Consensus pattern (18 bp):
ATAATTTTACATAATTTG
Found at i:18415649 original size:10 final size:10
Alignment explanation
Indices: 18415634--18415678 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
18415624 TTTTGGCTTA
18415634 ATAATTTTAC
1 ATAATTTTAC
18415644 ATAATTTTAC
1 ATAATTTTAC
*
18415654 ATAA-TTT-G
1 ATAATTTTAC
18415662 ATAATTTTAC
1 ATAATTTTAC
*
18415672 CTAATTT
1 ATAATTT
18415679 AATTAAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
8 4 0.13
9 6 0.20
10 20 0.67
ACGTcount: A:0.38, C:0.09, G:0.02, T:0.51
Consensus pattern (10 bp):
ATAATTTTAC
Found at i:18415667 original size:18 final size:18
Alignment explanation
Indices: 18415644--18415678 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
18415634 ATAATTTTAC
18415644 ATAATTTTACATAATTTG
1 ATAATTTTACATAATTTG
*
18415662 ATAATTTTACCTAATTT
1 ATAATTTTACATAATTT
18415679 AATTAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.09, G:0.03, T:0.51
Consensus pattern (18 bp):
ATAATTTTACATAATTTG
Found at i:18415744 original size:10 final size:10
Alignment explanation
Indices: 18415700--18415727 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
18415690 TTTTGGATTA
18415700 ATAATTTTAC
1 ATAATTTTAC
18415710 ATAATTTTAC
1 ATAATTTTAC
18415720 ATAATTTT
1 ATAATTTT
18415728 GTGATTTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (10 bp):
ATAATTTTAC
Found at i:18415770 original size:46 final size:49
Alignment explanation
Indices: 18415720--18415848 Score: 138
Period size: 56 Copynumber: 2.5 Consensus size: 49
18415710 ATAATTTTAC
*
18415720 ATAATTTTG-TGATTTTACCTAATTTAATTAAAAAAATTTTGGCTTAATA
1 ATAATTTTGATAATTTTACCTAATTTAATTAAAAAAATTTTGGCTT-ATA
18415769 ATTTTACATAATTTGATAATTTTACCTAATTTAATTAAAAAAATTTTGGC-T-TA
1 A---TA-AT--TTTGATAATTTTACCTAATTTAATTAAAAAAATTTTGGCTTATA
* *
18415822 ATAATTTTACATAATTTTACATAATTT
1 ATAATTTT-GATAATTTTACCTAATTT
18415849 GATAATTTTA
Statistics
Matches: 69, Mismatches: 3, Indels: 17
0.78 0.03 0.19
Matches are distributed among these distances:
47 3 0.04
48 16 0.23
49 3 0.04
50 2 0.03
52 2 0.03
53 5 0.07
55 5 0.07
56 33 0.48
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.48
Consensus pattern (49 bp):
ATAATTTTGATAATTTTACCTAATTTAATTAAAAAAATTTTGGCTTATA
Found at i:18415772 original size:188 final size:188
Alignment explanation
Indices: 18415578--18415925 Score: 633
Period size: 188 Copynumber: 1.9 Consensus size: 188
18415568 ATAATTTTAC
***
18415578 ATAATTTTACATAATTTGATAATTTTACCTAATTTAATTAAAATTTTTTTGGCTTAATAATTTTA
1 ATAATTTTACATAATTTGATAATTTTACCTAATTTAATTAAAAAAATTTTGGCTTAATAATTTTA
18415643 CATAATTTTACATAATTTGATAATTTTACCTAATTTAATTAAAATTTTTTTGGATTAATAATTTT
66 CATAATTTTACATAATTTGATAATTTTACCTAATTTAATTAAAATTTTTTTGGATTAATAATTTT
* *
18415708 ACATAATTTTACATAATTTTGTGATTTTACCTAATTTAATTAAAAAAATTTTGGCTTA
131 ACATAATTTTACATAATTTTATAATTTTACCTAATTTAATTAAAAAAATTTTGGCTTA
18415766 ATAATTTTACATAATTTGATAATTTTACCTAATTTAATTAAAAAAATTTTGGCTTAATAATTTTA
1 ATAATTTTACATAATTTGATAATTTTACCTAATTTAATTAAAAAAATTTTGGCTTAATAATTTTA
* *
18415831 CATAATTTTACATAATTTGATAATTTTACCTAATTTAATTAAATTTTTTTTGGCTTAATAATTTT
66 CATAATTTTACATAATTTGATAATTTTACCTAATTTAATTAAAATTTTTTTGGATTAATAATTTT
18415896 ACATAATTTTACATAATTTTATAATTTTAC
131 ACATAATTTTACATAATTTTATAATTTTAC
18415926 TAAAAATTAA
Statistics
Matches: 153, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
188 153 1.00
ACGTcount: A:0.38, C:0.07, G:0.05, T:0.51
Consensus pattern (188 bp):
ATAATTTTACATAATTTGATAATTTTACCTAATTTAATTAAAAAAATTTTGGCTTAATAATTTTA
CATAATTTTACATAATTTGATAATTTTACCTAATTTAATTAAAATTTTTTTGGATTAATAATTTT
ACATAATTTTACATAATTTTATAATTTTACCTAATTTAATTAAAAAAATTTTGGCTTA
Found at i:18415789 original size:18 final size:18
Alignment explanation
Indices: 18415766--18415800 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
18415756 TTTTGGCTTA
18415766 ATAATTTTACATAATTTG
1 ATAATTTTACATAATTTG
*
18415784 ATAATTTTACCTAATTT
1 ATAATTTTACATAATTT
18415801 AATTAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.09, G:0.03, T:0.51
Consensus pattern (18 bp):
ATAATTTTACATAATTTG
Found at i:18415837 original size:10 final size:10
Alignment explanation
Indices: 18415822--18415866 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
18415812 TTTTGGCTTA
18415822 ATAATTTTAC
1 ATAATTTTAC
18415832 ATAATTTTAC
1 ATAATTTTAC
*
18415842 ATAA-TTT-G
1 ATAATTTTAC
18415850 ATAATTTTAC
1 ATAATTTTAC
*
18415860 CTAATTT
1 ATAATTT
18415867 AATTAAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
8 4 0.13
9 6 0.20
10 20 0.67
ACGTcount: A:0.38, C:0.09, G:0.02, T:0.51
Consensus pattern (10 bp):
ATAATTTTAC
Found at i:18415903 original size:10 final size:10
Alignment explanation
Indices: 18415888--18415925 Score: 62
Period size: 10 Copynumber: 4.0 Consensus size: 10
18415878 TTTTGGCTTA
18415888 ATAATTTTAC
1 ATAATTTTAC
18415898 ATAATTTTAC
1 ATAATTTTAC
18415908 ATAATTTT--
1 ATAATTTTAC
18415916 ATAATTTTAC
1 ATAATTTTAC
18415926 TAAAAATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 8 0.31
10 18 0.69
ACGTcount: A:0.39, C:0.08, G:0.00, T:0.53
Consensus pattern (10 bp):
ATAATTTTAC
Found at i:18415925 original size:18 final size:19
Alignment explanation
Indices: 18415822--18415924 Score: 63
Period size: 18 Copynumber: 5.5 Consensus size: 19
18415812 TTTTGGCTTA
18415822 ATAATTTTACATAATTTTAC
1 ATAATTTTA-ATAATTTTAC
*
18415842 ATAA-TTTGATAATTTTAC
1 ATAATTTTAATAATTTTAC
* *
18415860 CTAA-TTTAATTAAATTTT-T
1 ATAATTTTAA-T-AATTTTAC
* ****
18415879 TTTGGCTTAATAATTTTAC
1 ATAATTTTAATAATTTTAC
18415898 ATAATTTTACATAATTTT--
1 ATAATTTTA-ATAATTTTAC
18415916 ATAATTTTA
1 ATAATTTTA
18415925 CTAAAAATTA
Statistics
Matches: 64, Mismatches: 14, Indels: 12
0.71 0.16 0.13
Matches are distributed among these distances:
18 32 0.50
19 10 0.16
20 22 0.34
ACGTcount: A:0.37, C:0.07, G:0.03, T:0.53
Consensus pattern (19 bp):
ATAATTTTAATAATTTTAC
Found at i:18415970 original size:188 final size:189
Alignment explanation
Indices: 18415588--18415970 Score: 576
Period size: 188 Copynumber: 2.0 Consensus size: 189
18415578 ATAATTTTAC
***
18415588 ATAATTTGATAATTTTACCTAATTTAATTAAAATTTTTTTGGCTTAATAATTTTACATAATTTTA
1 ATAATTTGATAATTTTACCTAATTTAATTAAAAAAATTTTGGCTTAATAATTTTACATAATTTTA
*
18415653 CATAATTTGATAATTTTACCTAATTTAATTAAAATTTTTTTGGATTAATAATTTTACATAATTTT
66 CATAATTTGATAATTTTACCTAATTTAATTAAAATTTTTTTGGCTTAATAATTTTACATAATTTT
* * * *
18415718 ACATAATTTTGTGATTTTACCTAATTTAATTAAAAAAATTTTGGCTTAATAATT--TTAC
131 ACATAATTTTATAATTTTACCTAA-TTAATTAAAAAAATTTTGGCTTAATAATTAATAAA
18415776 ATAATTTGATAATTTTACCTAATTTAATTAAAAAAATTTTGGCTTAATAATTTTACATAATTTTA
1 ATAATTTGATAATTTTACCTAATTTAATTAAAAAAATTTTGGCTTAATAATTTTACATAATTTTA
*
18415841 CATAATTTGATAATTTTACCTAATTTAATTAAATTTTTTTTGGCTTAATAATTTTACATAATTTT
66 CATAATTTGATAATTTTACCTAATTTAATTAAAATTTTTTTGGCTTAATAATTTTACATAATTTT
* * * * ***
18415906 ACATAATTTTATAATTTTA-CTAA-AAATTAATACAATTATCAATTAATAATTGAATAAA
131 ACATAATTTTATAATTTTACCTAATTAATTAAAAAAATTTTGGCTTAATAATT-AATAAA
18415964 ATAATTT
1 ATAATTT
18415971 TTTTCCAAAA
Statistics
Matches: 176, Mismatches: 16, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
185 21 0.12
187 4 0.02
188 151 0.86
ACGTcount: A:0.40, C:0.07, G:0.04, T:0.49
Consensus pattern (189 bp):
ATAATTTGATAATTTTACCTAATTTAATTAAAAAAATTTTGGCTTAATAATTTTACATAATTTTA
CATAATTTGATAATTTTACCTAATTTAATTAAAATTTTTTTGGCTTAATAATTTTACATAATTTT
ACATAATTTTATAATTTTACCTAATTAATTAAAAAAATTTTGGCTTAATAATTAATAAA
Found at i:18421394 original size:6 final size:6
Alignment explanation
Indices: 18421383--18421409 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
18421373 AATTCAAAAA
18421383 AAATTC AAATTC AAATTC AAATTC AAA
1 AAATTC AAATTC AAATTC AAATTC AAA
18421410 AATATATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.30
Consensus pattern (6 bp):
AAATTC
Found at i:18423366 original size:51 final size:52
Alignment explanation
Indices: 18423247--18423375 Score: 183
Period size: 51 Copynumber: 2.5 Consensus size: 52
18423237 ACTAGTGACT
*
18423247 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTATGAAGAAAGATAGCTTTGGTCA
* *
18423299 CAAGTGTGGTATTATGTGAAGGCCACTTTATGAAG-AAGGTAGCTTTGG-CTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTATGAAGAAAGATAGCTTTGGTC-A
*
18423350 CAAGGGTGGTACTATGT-ACAGGCCAC
1 CAAGTGTGGTACTATGTGA-AGGCCAC
18423376 CGGGTATCCG
Statistics
Matches: 70, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
50 2 0.03
51 35 0.50
52 33 0.47
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (52 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTATGAAGAAAGATAGCTTTGGTCA
Found at i:18431256 original size:43 final size:42
Alignment explanation
Indices: 18431185--18431348 Score: 190
Period size: 43 Copynumber: 3.8 Consensus size: 42
18431175 CAAAAAGCTC
* *
18431185 ATACAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAA
1 ATACGATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAA
*
18431227 ATAACGATGCC-ACTGTCCCAGACAG-GGTCTTACACGTAATCAT
1 AT-ACGATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCAA
* * **
18431270 ATACGACGCCAATGTCCCAGATATGGTCTTACACGTAAATGTCAA
1 ATACGATGCCAACGTCCCAGACGTGGTCTTACACGT-AA--TCAA
18431315 AT-CGATGCCAACGTCCCAGACGTGGTCTTACACG
1 ATACGATGCCAACGTCCCAGACGTGGTCTTACACG
18431349 ATATCACATT
Statistics
Matches: 102, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
42 31 0.30
43 37 0.36
44 29 0.28
45 5 0.05
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (42 bp):
ATACGATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAA
Done.