Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 ID=Chr13-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58321163
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 747533 characters in sequence are not A, C, G, or T
File 80 of 199
Found at i:24116405 original size:11 final size:11
Alignment explanation
Indices: 24116389--24116439 Score: 84
Period size: 11 Copynumber: 4.6 Consensus size: 11
24116379 TTCAAAAATT
24116389 CTCTTAAGTTC
1 CTCTTAAGTTC
24116400 CTCTTAAGTTC
1 CTCTTAAGTTC
*
24116411 CTTTTAAGTTC
1 CTCTTAAGTTC
*
24116422 CTCTTAAGTTT
1 CTCTTAAGTTC
24116433 CTCTTAA
1 CTCTTAA
24116440 CTCCCTTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
11 37 1.00
ACGTcount: A:0.20, C:0.24, G:0.08, T:0.49
Consensus pattern (11 bp):
CTCTTAAGTTC
Found at i:24116412 original size:33 final size:33
Alignment explanation
Indices: 24116353--24116439 Score: 86
Period size: 33 Copynumber: 2.6 Consensus size: 33
24116343 TCTCTCATAT
* * * *
24116353 TTCCTCTCAATTTCCTCTCAATTTCCTTCAAAAA
1 TTCCTCTTAAGTTCCTCTTAAGTTCCTT-AAAAA
** *
24116387 TT-CTCTTAAGTTCCTCTTAAGTTCCTTTTAAG
1 TTCCTCTTAAGTTCCTCTTAAGTTCCTTAAAAA
*
24116419 TTCCTCTTAAGTTTCTCTTAA
1 TTCCTCTTAAGTTCCTCTTAA
24116440 CTCCCTTTTT
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
32 4 0.09
33 38 0.86
34 2 0.05
ACGTcount: A:0.22, C:0.26, G:0.05, T:0.47
Consensus pattern (33 bp):
TTCCTCTTAAGTTCCTCTTAAGTTCCTTAAAAA
Found at i:24116485 original size:12 final size:12
Alignment explanation
Indices: 24116446--24116489 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
24116436 TTAACTCCCT
*
24116446 TTTTTTTAAATA
1 TTTTTTAAAATA
* *
24116458 ATTTTAAAAATA
1 TTTTTTAAAATA
24116470 TTTTTTAAAAT-
1 TTTTTTAAAATA
24116481 TTTTTTAAA
1 TTTTTTAAA
24116490 CCGTAAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
11 9 0.33
12 18 0.67
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TTTTTTAAAATA
Found at i:24117603 original size:7 final size:7
Alignment explanation
Indices: 24117591--24117615 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
24117581 AGTCGATTGA
24117591 TATTTAG
1 TATTTAG
24117598 TATTTAG
1 TATTTAG
24117605 TATTTAG
1 TATTTAG
24117612 TATT
1 TATT
24117616 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:24118293 original size:18 final size:18
Alignment explanation
Indices: 24118266--24118301 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
24118256 CAGGTGCGTT
*
24118266 TCCTAGCCCTTATATGTA
1 TCCTAACCCTTATATGTA
24118284 TCCTAACCCTTATATGTA
1 TCCTAACCCTTATATGTA
24118302 CCCTTTTTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.28, G:0.08, T:0.39
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:24118585 original size:21 final size:21
Alignment explanation
Indices: 24118561--24118609 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
24118551 AGATGCCGTA
* *
24118561 CCGGAAGAACCAGAATCC-CCG
1 CCGGAAGAACAACAA-CCGCCG
*
24118582 CCGGAGGAACAACAACCGCCG
1 CCGGAAGAACAACAACCGCCG
24118603 CCGGAAG
1 CCGGAAG
24118610 CTAGAGAAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.33, C:0.37, G:0.29, T:0.02
Consensus pattern (21 bp):
CCGGAAGAACAACAACCGCCG
Found at i:24118858 original size:45 final size:45
Alignment explanation
Indices: 24118794--24119422 Score: 713
Period size: 45 Copynumber: 14.0 Consensus size: 45
24118784 AACCATTAAT
*
24118794 ACCCTTAAA-TTAAAAACCCTAACCTAATTTAATTAAAAACCTTAA
1 ACCC-TAAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAA
24118839 ACCCTAAACTTAAAAACCCTAACCTAA-TTAACTTAAAAACCCT-A
1 ACCCTAAACTTAAAAACCCTAACCTAATTTAA-TTAAAAACCCTAA
* *
24118883 A-CCTAATTAAATTAAAAACCCTAATCTAATTTAATTAAAAACCCTAA
1 ACCCT-A--AACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAA
* * * * *
24118930 ATCATAAACCTAAAAATCCTAACCTAATTAAATTAAAAACCCTAA
1 ACCCTAAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAA
*
24118975 ACCTTAAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAA
1 ACCCTAAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAA
24119020 ACCCTAAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAA
1 ACCCTAAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAA
* ***
24119065 ACCCTAAACTTAAAAACGCTAACC-CCCTTAACTTAAAAACCCT-A
1 ACCCTAAACTTAAAAACCCTAACCTAATTTAA-TTAAAAACCCTAA
* *
24119109 A-CCTAATTAACATAAAAACCCTAACCTAATTTAATTAAAAACTCTAA
1 ACCCT-A--AACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAA
* * *
24119156 ACCTTAAACTTAAAAACACTAACCTAATTTAATTAAAAACCTTAA
1 ACCCTAAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAA
* *
24119201 AACCTAAACTTAAAAACCCTAACCTAATTAAATT---AA----AA
1 ACCCTAAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAA
***
24119239 ACCCTAAACTTAAAAACCCTAA-CTCCCTTAACTTAAAAACCCT-A
1 ACCCTAAACTTAAAAACCCTAACCTAATTTAA-TTAAAAACCCTAA
* *
24119283 A-CCTAATTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCTTAA
1 ACCCT-A--AACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAA
**
24119330 ACCCTAAACTTAAAAACCCTAACCCCA-TTAACTTAAAAACCCT-A
1 ACCCTAAACTTAAAAACCCTAACCTAATTTAA-TTAAAAACCCTAA
*
24119374 A-CCTAATTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAA
1 ACCCT-A--AACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAA
24119421 AC
1 AC
24119423 TAAATTAATA
Statistics
Matches: 497, Mismatches: 51, Indels: 69
0.81 0.08 0.11
Matches are distributed among these distances:
37 5 0.01
38 25 0.05
41 2 0.00
42 2 0.00
43 12 0.02
44 27 0.05
45 278 0.56
46 111 0.22
47 28 0.06
48 7 0.01
ACGTcount: A:0.49, C:0.25, G:0.00, T:0.25
Consensus pattern (45 bp):
ACCCTAAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAA
Found at i:24118951 original size:91 final size:90
Alignment explanation
Indices: 24118798--24119422 Score: 626
Period size: 91 Copynumber: 7.0 Consensus size: 90
24118788 ATTAATACCC
* * *
24118798 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCTTAAACCCTAAACTTAAAAACCCTAACC
1 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAATCATAAACTTAAAAACCCTAACC
24118863 TAATTAACTTAAAAACCCT-AACCTAA
66 TAATTAA-TTAAAAACCCTAAACCT-A
* * *
24118889 TTAAATTAAAAACCCTAATCTAATTTAATTAAAAACCCTAAATCATAAACCTAAAAATCCTAACC
1 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAATCATAAACTTAAAAACCCTAACC
24118954 TAATTAAATTAAAAACCCTAAACC--
66 TAATT-AATTAAAAACCCTAAACCTA
* *
24118978 TTAAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAAC
1 TTAAA-TTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAATCATAAACTTAAAAACCCTAAC
24119043 CTAATTTAATTAAAAACCCTAAACCCTA
65 CTAA-TTAATTAAAAACCCTAAA-CCTA
* * *** * * * *
24119071 --AACTTAAAAACGCTAACC-CCCTTAACTTAAAAACCCTAACCTAATTAACATAAAAACCCTAA
1 TTAAATTAAAAACCCTAACCTAATTTAA-TTAAAAACCCTAA-ATCATAAACTTAAAAACCCTAA
*
24119133 CCTAATTTAATTAAAAACTCTAAACC--
64 CCTAA-TTAATTAAAAACCCTAAACCTA
* * * *
24119159 TTAAACTTAAAAACACTAACCTAATTTAATTAAAAACCTTAAAACCTAAACTTAAAAACCCTAAC
1 TTAAA-TTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAATCATAAACTTAAAAACCCTAAC
24119224 CTAATTAAATTAAAAACCCTAAA-C--
65 CTAATT-AATTAAAAACCCTAAACCTA
*** * * *
24119248 -----TTAAAAACCCTAA-CTCCCTTAACTTAAAAACCCTAACCTAATTAACTTAAAAACCCTAA
1 TTAAATTAAAAACCCTAACCTAATTTAA-TTAAAAACCCTAA-ATCATAAACTTAAAAACCCTAA
*
24119307 CCTAATTAAATTAAAAACCTTAAACCCTA
64 CCTAATT-AATTAAAAACCCTAAA-CCTA
* ** * *
24119336 --AACTTAAAAACCCTAACCCCA-TTAACTTAAAAACCCTAACCTAATTAAA-TTAAAAACCCTA
1 TTAAATTAAAAACCCTAACCTAATTTAA-TTAAAAACCCTAA-ATCA-TAAACTTAAAAACCCTA
24119397 ACCTAATTTAATTAAAAACCCTAAAC
63 ACCTAA-TTAATTAAAAACCCTAAAC
24119423 TAAATTAATA
Statistics
Matches: 457, Mismatches: 51, Indels: 53
0.81 0.09 0.09
Matches are distributed among these distances:
82 6 0.01
83 24 0.05
84 40 0.09
86 1 0.00
89 12 0.03
90 142 0.31
91 215 0.47
92 17 0.04
ACGTcount: A:0.49, C:0.25, G:0.00, T:0.26
Consensus pattern (90 bp):
TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAATCATAAACTTAAAAACCCTAACC
TAATTAATTAAAAACCCTAAACCTA
Found at i:24119262 original size:14 final size:15
Alignment explanation
Indices: 24119229--24119260 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
24119219 CTAACCTAAT
24119229 TAAA-TTAAAAACCC
1 TAAACTTAAAAACCC
24119243 TAAACTTAAAAACCC
1 TAAACTTAAAAACCC
24119258 TAA
1 TAA
24119261 CTCCCTTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (15 bp):
TAAACTTAAAAACCC
Found at i:24119399 original size:23 final size:23
Alignment explanation
Indices: 24118798--24119430 Score: 438
Period size: 23 Copynumber: 28.2 Consensus size: 23
24118788 ATTAATACCC
24118798 TTAAATTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
* *
24118821 TTTAATTAAAAACCTTAAACCCT-A
1 TTAAATTAAAAACCCT-AA-CCTAA
*
24118845 --AACTTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
*
24118866 TTAACTTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
*
24118889 TTAAATTAAAAACCCTAATCTAA
1 TTAAATTAAAAACCCTAACCTAA
* * *
24118912 TTTAATTAAAAACCCTAA-ATCA
1 TTAAATTAAAAACCCTAACCTAA
* *
24118934 -TAAACCTAAAAATCCTAACCTAA
1 TTAAA-TTAAAAACCCTAACCTAA
24118957 TTAAATTAAAAACCCTAAACC---
1 TTAAATTAAAAACCCT-AACCTAA
24118978 TTAAACTTAAAAACCCTAACCTAA
1 TTAAA-TTAAAAACCCTAACCTAA
*
24119002 TTTAATTAAAAACCCTAAACCCT-A
1 TTAAATTAAAAACCCT-AA-CCTAA
*
24119026 --AACTTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
*
24119047 TTTAATTAAAAACCCTAAACCCT-A
1 TTAAATTAAAAACCCT-AA-CCTAA
* * ***
24119071 --AACTTAAAAACGCTAACCCCC
1 TTAAATTAAAAACCCTAACCTAA
*
24119092 TTAACTTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
24119115 TTAACA-TAAAAACCCTAACCTAA
1 TTAA-ATTAAAAACCCTAACCTAA
* *
24119138 TTTAATTAAAAACTCTAAACC---
1 TTAAATTAAAAACCCT-AACCTAA
*
24119159 TTAAACTTAAAAACACTAACCTAA
1 TTAAA-TTAAAAACCCTAACCTAA
* *
24119183 TTTAATTAAAAACCTTAAAACCT-A
1 TTAAATTAAAAACCCT--AACCTAA
*
24119207 --AACTTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
*
24119228 TTAAATTAAAAACCCTAAACTTAA
1 TTAAATTAAAAACCCT-AACCTAA
* ** *
24119252 --AAACCCT-AACTCCCTTAACTTAA
1 TTAAA--TTAAAAACCC-TAACCTAA
**** *
24119275 --AAA-CCCTAA-CCTAA--T-T
1 TTAAATTAAAAACCCTAACCTAA
*
24119291 --AACTTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
*
24119312 TTAAATTAAAAACCTTAAACCCT-A
1 TTAAATTAAAAACCCT-AA-CCTAA
* **
24119336 --AACTTAAAAACCCTAACCCCA
1 TTAAATTAAAAACCCTAACCTAA
*
24119357 TTAACTTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
24119380 TTAAATTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
* *
24119403 TTTAATTAAAAACCCTAAACTAAA
1 TTAAATTAAAAACCCTAACCT-AA
24119427 TTAA
1 TTAA
24119431 TAATTTTACT
Statistics
Matches: 487, Mismatches: 70, Indels: 105
0.74 0.11 0.16
Matches are distributed among these distances:
16 2 0.00
17 3 0.01
18 5 0.01
19 3 0.01
20 18 0.04
21 32 0.07
22 95 0.20
23 266 0.55
24 46 0.09
25 17 0.03
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (23 bp):
TTAAATTAAAAACCCTAACCTAA
Found at i:24119547 original size:116 final size:116
Alignment explanation
Indices: 24119425--24119668 Score: 411
Period size: 116 Copynumber: 2.1 Consensus size: 116
24119415 CCCTAAACTA
**
24119425 AATTAATAATTTTAC-TTTCACATAATGTTAGATTTGGAAAAATGTTTTTTCCTGGTACTAACAA
1 AATTAATAATTTTACATTT-ACATAATGTTAGATTTGGAAAAATG-TTTTGACTGGTACTAACAA
*
24119489 TTAATAATTTTATAAAATTTGATAA-TTGTACTAATCATTAATACAATTTATC
64 TTAATAATTTTATAAAATTTGATAATTTGTACTAACCATTAATACAATTTATC
24119541 AATTAATAATTTTACATTTACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATT
1 AATTAATAATTTTACATTTACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATT
* *
24119606 AATAATTTTATATAATTTGATAATTTTTACTAACCATTAATACAATTTATC
66 AATAATTTTATAAAATTTGATAATTTGTACTAACCATTAATACAATTTATC
24119657 AATTAATAATTT
1 AATTAATAATTT
24119669 CACAAACTTA
Statistics
Matches: 121, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
115 41 0.34
116 77 0.64
117 3 0.02
ACGTcount: A:0.40, C:0.09, G:0.07, T:0.44
Consensus pattern (116 bp):
AATTAATAATTTTACATTTACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATT
AATAATTTTATAAAATTTGATAATTTGTACTAACCATTAATACAATTTATC
Found at i:24122904 original size:123 final size:123
Alignment explanation
Indices: 24122684--24123045 Score: 553
Period size: 123 Copynumber: 2.9 Consensus size: 123
24122674 CATGCTACTG
24122684 TAGCAAAAGCGCGTCCACGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTGCTAGAA
1 TAGCAAAAGCGCGTCCACGAGGGCGCGATTTT-ACAAATTCTTCTCAAATAGCATCCTGCTAGAA
* *
24122749 GCGATTTTATACTATTTGCTCAGAAACATCAAAAAAATTATTTCTTCCATGACCGACTA
65 GCTATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTATTTCTTCCATGACCGACTA
** *
24122808 TAGCAAAAGTACGTCTACGAGGGCGCGATTTTACAAATTCTTCTCAAATAGCATCCTGCTAGAAG
1 TAGCAAAAGCGCGTCCACGAGGGCGCGATTTTACAAATTCTTCTCAAATAGCATCCTGCTAGAAG
* ** * *
24122873 CTATTTTATACTATTTGCTCAGAAATGTCAAAAAAATTATTTCTTTGATGACCTACTG
66 CTATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTATTTCTTCCATGACCGACTA
* * * *
24122931 TAGCCAAAGCGCGTCCACGATGGCACGATTTCACAAATTCTTCTCAAATAGCATCCTGCTAGAAG
1 TAGCAAAAGCGCGTCCACGAGGGCGCGATTTTACAAATTCTTCTCAAATAGCATCCTGCTAGAAG
* *
24122996 CTATTTTATACTATTTGATCAGAAACGTCAACTCAAAATTATTTCTTCCA
66 CTATTTTATACTATTTGCTCAGAAACGTCAA--AAAAATTATTTCTTCCA
24123046 AGATCTAAAA
Statistics
Matches: 214, Mismatches: 22, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
123 171 0.80
124 29 0.14
125 14 0.07
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.31
Consensus pattern (123 bp):
TAGCAAAAGCGCGTCCACGAGGGCGCGATTTTACAAATTCTTCTCAAATAGCATCCTGCTAGAAG
CTATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTATTTCTTCCATGACCGACTA
Found at i:24123364 original size:29 final size:28
Alignment explanation
Indices: 24123306--24123374 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 28
24123296 GCGATTTGCC
* *
24123306 AAAAAATGGACCATTCCGGTAAATAATT
1 AAAAAAAGGCCCATTCCGGTAAATAATT
* * **
24123334 AAATAATAGGCCCATTTCGGTAAATTTTT
1 AAA-AAAAGGCCCATTCCGGTAAATAATT
24123363 AAAAAAAGGCCC
1 AAAAAAAGGCCC
24123375 TTAAATTTCT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
28 11 0.33
29 22 0.67
ACGTcount: A:0.43, C:0.16, G:0.14, T:0.26
Consensus pattern (28 bp):
AAAAAAAGGCCCATTCCGGTAAATAATT
Found at i:24124834 original size:27 final size:26
Alignment explanation
Indices: 24124804--24124854 Score: 84
Period size: 27 Copynumber: 1.9 Consensus size: 26
24124794 ATTAATTATG
24124804 TTAAATAATATTAAAACCTAAGTAATA
1 TTAAATAATATT-AAACCTAAGTAATA
*
24124831 TTAAATAATATTAAACTTAAGTAA
1 TTAAATAATATTAAACCTAAGTAA
24124855 CAAAAAGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 11 0.48
27 12 0.52
ACGTcount: A:0.55, C:0.06, G:0.04, T:0.35
Consensus pattern (26 bp):
TTAAATAATATTAAACCTAAGTAATA
Found at i:24128279 original size:29 final size:28
Alignment explanation
Indices: 24128234--24128293 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 28
24128224 TAATTCGGCC
* *
24128234 AACTTTGAAAAATTATAGTCATGCCCTA
1 AACTTTGAAAAATTATAGTAATGCCCCA
24128262 AACTTTGGAAAAATTATAGTAATGCCCCA
1 AACTTT-GAAAAATTATAGTAATGCCCCA
24128291 AAC
1 AAC
24128294 GTTTATAAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 6 0.21
29 23 0.79
ACGTcount: A:0.42, C:0.18, G:0.12, T:0.28
Consensus pattern (28 bp):
AACTTTGAAAAATTATAGTAATGCCCCA
Found at i:24128885 original size:21 final size:21
Alignment explanation
Indices: 24128861--24128987 Score: 75
Period size: 21 Copynumber: 5.9 Consensus size: 21
24128851 TTTGAACATG
24128861 TAGAAGTTATATGTGAACCCA
1 TAGAAGTTATATGTGAACCCA
* *
24128882 TAGAAATTATATGCGAA-CC-
1 TAGAAGTTATATGTGAACCCA
* *
24128901 TAGAAGAAATATCATGT-AGACACTA
1 TAGAAG--TTAT-ATGTGA-AC-CCA
* * *
24128926 TAGGAA-TTGCA-ATTTGAACACG
1 TA-GAAGTT--ATATGTGAACCCA
24128948 TAGAAGTTATATGTGAACCCA
1 TAGAAGTTATATGTGAACCCA
*
24128969 TAGAAATTATATGTGAACC
1 TAGAAGTTATATGTGAACC
24128988 TTAACTGCTT
Statistics
Matches: 78, Mismatches: 15, Indels: 26
0.66 0.13 0.22
Matches are distributed among these distances:
19 5 0.06
20 3 0.04
21 48 0.62
22 8 0.10
23 6 0.08
24 2 0.03
25 3 0.04
26 3 0.04
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (21 bp):
TAGAAGTTATATGTGAACCCA
Found at i:24128956 original size:87 final size:87
Alignment explanation
Indices: 24128805--24128988 Score: 298
Period size: 87 Copynumber: 2.1 Consensus size: 87
24128795 ACTGAATAAC
* * * * *
24128805 ATGCAAACCTAGAGGAAATATCATGCGAGCACTATAGGAATTGTAATTTGAACATGTAGAAGTTA
1 ATGCGAACCTAGAAGAAATATCATGAGAGCACTATAGGAATTGCAATTTGAACACGTAGAAGTTA
24128870 TATGTGAACCCATAGAAATTAT
66 TATGTGAACCCATAGAAATTAT
24128892 ATGCGAACCTAGAAGAAATATCATGTAGA-CACTATAGGAATTGCAATTTGAACACGTAGAAGTT
1 ATGCGAACCTAGAAGAAATATCATG-AGAGCACTATAGGAATTGCAATTTGAACACGTAGAAGTT
24128956 ATATGTGAACCCATAGAAATTAT
65 ATATGTGAACCCATAGAAATTAT
*
24128979 ATGTGAACCT
1 ATGCGAACCT
24128989 TAACTGCTTA
Statistics
Matches: 90, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
87 88 0.98
88 2 0.02
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (87 bp):
ATGCGAACCTAGAAGAAATATCATGAGAGCACTATAGGAATTGCAATTTGAACACGTAGAAGTTA
TATGTGAACCCATAGAAATTAT
Found at i:24130988 original size:23 final size:22
Alignment explanation
Indices: 24130958--24131060 Score: 96
Period size: 19 Copynumber: 5.0 Consensus size: 22
24130948 AAATTAAATC
*
24130958 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-ATATCATATCT
* *
24130981 TCTAAGATTGCATATCATA--A
1 TCTAAGATTACATATCATATCT
24131001 TCTAAGATTACATATCATA---
1 TCTAAGATTACATATCATATCT
* *
24131020 TCTGAGATTGCATATCATA---
1 TCTAAGATTACATATCATATCT
24131039 TCTAAGATTACATATCATATCT
1 TCTAAGATTACATATCATATCT
24131061 AAGATTGCAT
Statistics
Matches: 69, Mismatches: 8, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
19 34 0.49
20 18 0.26
22 7 0.10
23 10 0.14
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.37
Consensus pattern (22 bp):
TCTAAGATTACATATCATATCT
Found at i:24131027 original size:19 final size:19
Alignment explanation
Indices: 24130981--24131073 Score: 150
Period size: 19 Copynumber: 4.8 Consensus size: 19
24130971 AATCATATCT
24130981 TCTAAGATTGCATATCATAA
1 TCTAAGATTGCATATCAT-A
*
24131001 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
*
24131020 TCTGAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
24131039 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
24131058 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
24131074 CTTGAAGATT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
19 50 0.75
20 17 0.25
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:24131051 original size:38 final size:39
Alignment explanation
Indices: 24130958--24131073 Score: 171
Period size: 38 Copynumber: 2.9 Consensus size: 39
24130948 AAATTAAATC
*
24130958 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATAA
1 TCTAAGATTAC-ATATCATA---TCTAAGATTGCATATCATAA
*
24131001 TCTAAGATTACATATCATATCTGAGATTGCATATCAT-A
1 TCTAAGATTACATATCATATCTAAGATTGCATATCATAA
24131039 TCTAAGATTACATATCATATCTAAGATTGCATATC
1 TCTAAGATTACATATCATATCTAAGATTGCATATC
24131074 CTTGAAGATT
Statistics
Matches: 70, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
38 35 0.50
39 17 0.24
42 7 0.10
43 11 0.16
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (39 bp):
TCTAAGATTACATATCATATCTAAGATTGCATATCATAA
Found at i:24132736 original size:3 final size:3
Alignment explanation
Indices: 24132730--24132791 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
24132720 TTTTTTTTAC
24132730 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
24132778 ATT ATT ATT ATT AT
1 ATT ATT ATT ATT AT
24132792 ACATGAAGTT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:24133057 original size:16 final size:16
Alignment explanation
Indices: 24133026--24133073 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
24133016 TTTTAATTTT
24133026 TTTATTTATAAAATATTA
1 TTTATTT-T-AAATATTA
24133044 TTTATTTTAAATATTA
1 TTTATTTTAAATATTA
**
24133060 TTTACATTAAATAT
1 TTTATTTTAAATAT
24133074 ACCCATTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 20 0.71
17 1 0.04
18 7 0.25
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTATTTTAAATATTA
Found at i:24133061 original size:19 final size:18
Alignment explanation
Indices: 24133026--24133063 Score: 62
Period size: 16 Copynumber: 2.2 Consensus size: 18
24133016 TTTTAATTTT
24133026 TTTATTTATAAAATATTA
1 TTTATTTATAAAATATTA
24133044 TTTATTT-T-AAATATTA
1 TTTATTTATAAAATATTA
24133060 TTTA
1 TTTA
24133064 CATTAAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 12 0.60
17 1 0.05
18 7 0.35
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTATTTATAAAATATTA
Found at i:24146624 original size:12 final size:12
Alignment explanation
Indices: 24146607--24146639 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
24146597 GATGAACCTT
24146607 AGGTTATTTTTG
1 AGGTTATTTTTG
24146619 AGGTTATTTTTG
1 AGGTTATTTTTG
24146631 AGGTTATTT
1 AGGTTATTT
24146640 ACGTGTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.18, C:0.00, G:0.24, T:0.58
Consensus pattern (12 bp):
AGGTTATTTTTG
Found at i:24156159 original size:24 final size:24
Alignment explanation
Indices: 24156130--24156198 Score: 95
Period size: 24 Copynumber: 2.9 Consensus size: 24
24156120 TTTCTAGAAG
*
24156130 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGTATAATAT
* *
24156154 ATTTAGCATATATTAGCATAATAT
1 ATTTAGCATTTATTAGTATAATAT
24156178 ATTT-GACATTTATTAGTATAA
1 ATTTAG-CATTTATTAGTATAA
24156199 AAATCTTTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
23 1 0.03
24 38 0.97
ACGTcount: A:0.39, C:0.04, G:0.09, T:0.48
Consensus pattern (24 bp):
ATTTAGCATTTATTAGTATAATAT
Found at i:24174024 original size:43 final size:42
Alignment explanation
Indices: 24173977--24174075 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 42
24173967 TCCCAAACGT
*
24173977 GGTCTTACATGTAATCAAATATGGATGCC-ACTATCCCAGACAG
1 GGTCTTACACGTAATCAAATAT-GATGCCGA-TATCCCAGACAG
* ** * *
24174020 GGTCTTACACGAAATCGTATATGATGCCGATGTCCCAGACAT
1 GGTCTTACACGTAATCAAATATGATGCCGATATCCCAGACAG
24174062 GGTCTTACACGTAA
1 GGTCTTACACGTAA
24174076 ATCTCAAATC
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 29 0.60
43 19 0.40
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.26
Consensus pattern (42 bp):
GGTCTTACACGTAATCAAATATGATGCCGATATCCCAGACAG
Found at i:24176094 original size:24 final size:23
Alignment explanation
Indices: 24176073--24176134 Score: 97
Period size: 24 Copynumber: 2.6 Consensus size: 23
24176063 AAGATTTATT
24176073 ATTTATTAGTATAATATATTTAGC
1 ATTTATTAGTATAATATATTTA-C
*
24176097 ATTTATTAGCATAATATATTTGAC
1 ATTTATTAGTATAATATATTT-AC
24176121 ATTTATTAGTATAA
1 ATTTATTAGTATAA
24176135 AAATCTTTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 34 0.97
25 1 0.03
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.48
Consensus pattern (23 bp):
ATTTATTAGTATAATATATTTAC
Found at i:24178324 original size:42 final size:42
Alignment explanation
Indices: 24178230--24178418 Score: 145
Period size: 42 Copynumber: 4.5 Consensus size: 42
24178220 ATTGAATAAA
* * * *
24178230 AAAGGGGTTGCTAAGTGCTGATTCC-CTGAATTATTGACT-TT
1 AAAGGGGTTGCTAAGTGCTGATTCCACCGTATT-TTGAATGTG
* * *
24178271 AGAGGTAGTTGCTAAGTGCT-ATTCCACCGTATCTTTGATTGTG
1 AAAGG-GGTTGCTAAGTGCTGATTCCACCGTAT-TTTGAATGTG
* * * *
24178314 AAAGGGGTTGCTATGTGCTGATTCC-CCGTATTACTAAATAT-
1 AAAGGGGTTGCTAAGTGCTGATTCCACCGTATT-TTGAATGTG
* * * *
24178355 AAAGGTGGTTGCTAAGTGCTGAATGCACCATATTTTTGACTGTG
1 AAAGG-GGTTGCTAAGTGCTGATTCCACCGTA-TTTTGAATGTG
*
24178399 AAAGGGGTTGCTATGTGCTG
1 AAAGGGGTTGCTAAGTGCTG
24178419 CTCCCCGTAT
Statistics
Matches: 116, Mismatches: 22, Indels: 18
0.74 0.14 0.12
Matches are distributed among these distances:
41 15 0.13
42 61 0.53
43 33 0.28
44 7 0.06
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (42 bp):
AAAGGGGTTGCTAAGTGCTGATTCCACCGTATTTTGAATGTG
Found at i:24178414 original size:85 final size:84
Alignment explanation
Indices: 24178230--24178466 Score: 271
Period size: 84 Copynumber: 2.8 Consensus size: 84
24178220 ATTGAATAAA
* * * * * * * *
24178230 AAAGGGGTTGCTAAGTGCTGATTCCCTGAATTATTGACTTTAGAGGTAGTTGCTAAGTGCT-ATT
1 AAAGGGGTTGCTATGTGCTGATTCCCCGTATTACTGA-ATTAAAGGTGGTTGCTAAGTGCTGAAT
* *
24178294 CCACCGTATCTTTGATTGTG
65 CCACCATATCTTTGACTGTG
*
24178314 AAAGGGGTTGCTATGTGCTGATTCCCCGTATTACTAAATATAAAGGTGGTTGCTAAGTGCTGAAT
1 AAAGGGGTTGCTATGTGCTGATTCCCCGTATTACTGAAT-TAAAGGTGGTTGCTAAGTGCTGAAT
* *
24178379 GCACCATATTTTTGACTGTG
65 CCACCATATCTTTGACTGTG
* * * * * *
24178399 AAAGGGGTTGCTATGTGCTG-CTCCCCGTATCACTGGATTTAAGGTGGTTGATAAGTGTTGAATC
1 AAAGGGGTTGCTATGTGCTGATTCCCCGTATTACTGAATTAAAGGTGGTTGCTAAGTGCTGAATC
24178463 CACC
66 CACC
24178467 GAGTAACGGA
Statistics
Matches: 130, Mismatches: 21, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
83 27 0.21
84 65 0.50
85 38 0.29
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (84 bp):
AAAGGGGTTGCTATGTGCTGATTCCCCGTATTACTGAATTAAAGGTGGTTGCTAAGTGCTGAATC
CACCATATCTTTGACTGTG
Found at i:24185708 original size:42 final size:41
Alignment explanation
Indices: 24185552--24185793 Score: 150
Period size: 42 Copynumber: 5.7 Consensus size: 41
24185542 ACCGAAAAAC
* * *
24185552 ATTGAATAAAAAAGGGGTTGCTAAGTGCTGATTCCCCGAATT
1 ATTGAAT-ATAAAGGGGTTGCTAAGTGCTGATTCACCGTATT
* * * * * *
24185594 ATTGACTTTAGAGGTAGATGCTAAGTGCTGATTCCACCATATCT
1 ATTGAATATAAAGG-GGTTGCTAAGTGCTGATT-CACCGTAT-T
* * * *
24185638 -TTGATTGTGAAAGGGGTTGCTATGTGCTGATTCTCCGTATT
1 ATTGAATAT-AAAGGGGTTGCTAAGTGCTGATTCACCGTATT
* *
24185679 ATTGAATATAAAGGTGGTTGCTAAATGCTGAATCCACCGTATT
1 ATTGAATATAAAGG-GGTTGCTAAGTGCTG-ATTCACCGTATT
* * * * *
24185722 -TTTAACTGTGAAAGCGGTTGCTATGTGCTGATTC-CCTGTATC
1 ATTGAA-TAT-AAAGGGGTTGCTAAGTGCTGATTCACC-GTATT
* * *
24185764 ACTGAAT-TTAAGATGGTTGCTAAGTGCTGA
1 ATTGAATATAAAG-GGGTTGCTAAGTGCTGA
24185794 ATCCACCGAG
Statistics
Matches: 153, Mismatches: 35, Indels: 25
0.72 0.16 0.12
Matches are distributed among these distances:
40 3 0.02
41 28 0.18
42 59 0.39
43 54 0.35
44 9 0.06
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (41 bp):
ATTGAATATAAAGGGGTTGCTAAGTGCTGATTCACCGTATT
Found at i:24185708 original size:85 final size:83
Alignment explanation
Indices: 24185562--24185800 Score: 280
Period size: 85 Copynumber: 2.8 Consensus size: 83
24185552 ATTGAATAAA
* * * * * * *
24185562 AAAGGGGTTGCTAAGTGCTGATTCCCCGAATTATTGACTTTAGAGGTAGATGCTAAGTGCTGATT
1 AAAGGGGTTGCTATGTGCTGATT-CCCGTATTATTGA-ATTAAAGGTGGTTGCTAAGTGCTGAAT
* *
24185627 CCACCATATCTTTGATTGTG
64 CCACCATATCTTTAACTGTG
*
24185647 AAAGGGGTTGCTATGTGCTGATTCTCCGTATTATTGAATATAAAGGTGGTTGCTAAATGCTGAAT
1 AAAGGGGTTGCTATGTGCTGATTC-CCGTATTATTGAAT-TAAAGGTGGTTGCTAAGTGCTGAAT
* *
24185712 CCACCGTATTTTTAACTGTG
64 CCACCATATCTTTAACTGTG
* * * * *
24185732 AAAGCGGTTGCTATGTGCTGATTCCCTGTATCACTGAATTTAAGATGGTTGCTAAGTGCTGAATC
1 AAAGGGGTTGCTATGTGCTGATTCCC-GTATTATTGAATTAAAGGTGGTTGCTAAGTGCTGAATC
24185797 CACC
65 CACC
24185801 GAGTAATGGA
Statistics
Matches: 133, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
84 31 0.23
85 102 0.77
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (83 bp):
AAAGGGGTTGCTATGTGCTGATTCCCGTATTATTGAATTAAAGGTGGTTGCTAAGTGCTGAATCC
ACCATATCTTTAACTGTG
Found at i:24185751 original size:43 final size:42
Alignment explanation
Indices: 24185612--24185752 Score: 115
Period size: 43 Copynumber: 3.3 Consensus size: 42
24185602 TAGAGGTAGA
* * * * *
24185612 TGCTAAGTGCTGATTCCACCATATCTTTGATTGTGAAAGGGGT
1 TGCTAAGTGCTGAATCCACCGTAT-TTTTAATGTGAAAGCGGT
* * * * * *
24185655 TGCTATGTGCTG-ATTCTCCGTATTATTGAATAT-AAAGGTGGT
1 TGCTAAGTGCTGAATCCACCGTATT-TTTAATGTGAAA-GCGGT
*
24185697 TGCTAAATGCTGAATCCACCGTATTTTTAACTGTGAAAGCGGT
1 TGCTAAGTGCTGAATCCACCGTATTTTTAA-TGTGAAAGCGGT
*
24185740 TGCTATGTGCTGA
1 TGCTAAGTGCTGA
24185753 TTCCCTGTAT
Statistics
Matches: 76, Mismatches: 17, Indels: 10
0.74 0.17 0.10
Matches are distributed among these distances:
41 4 0.05
42 31 0.41
43 38 0.50
44 3 0.04
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (42 bp):
TGCTAAGTGCTGAATCCACCGTATTTTTAATGTGAAAGCGGT
Found at i:24189012 original size:23 final size:23
Alignment explanation
Indices: 24188986--24189061 Score: 66
Period size: 23 Copynumber: 3.1 Consensus size: 23
24188976 TAAAATCAAT
24188986 ATATGCATATGCATTGGGTTGGG
1 ATATGCATATGCATTGGGTTGGG
*
24189009 ATATG-ATTATGC-TTGAGATTGTGTG
1 ATATGCA-TATGCATTG-GGTTG-G-G
24189034 ACATATTGCATATGCATTGGGTTGGG
1 --ATA-TGCATATGCATTGGGTTGGG
24189060 AT
1 AT
24189062 TTTGTGGTAG
Statistics
Matches: 42, Mismatches: 2, Indels: 17
0.69 0.03 0.28
Matches are distributed among these distances:
22 4 0.10
23 14 0.33
24 3 0.07
25 1 0.02
26 1 0.02
27 4 0.10
28 11 0.26
29 4 0.10
ACGTcount: A:0.24, C:0.08, G:0.30, T:0.38
Consensus pattern (23 bp):
ATATGCATATGCATTGGGTTGGG
Found at i:24196414 original size:20 final size:20
Alignment explanation
Indices: 24196377--24196417 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
24196367 TTAAAAAACA
* **
24196377 TATAAGTATTCATTTAATAT
1 TATAACTATTCAAATAATAT
24196397 TATAACTATTCAAATAATAT
1 TATAACTATTCAAATAATAT
24196417 T
1 T
24196418 GTTTGAATAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.46
Consensus pattern (20 bp):
TATAACTATTCAAATAATAT
Found at i:24197986 original size:15 final size:15
Alignment explanation
Indices: 24197966--24197995 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
24197956 TTGGGAAAGG
24197966 CTCTTCTTCGTCTTC
1 CTCTTCTTCGTCTTC
*
24197981 CTCTTCTTCTTCTTC
1 CTCTTCTTCGTCTTC
24197996 GTCGTCATCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.40, G:0.03, T:0.57
Consensus pattern (15 bp):
CTCTTCTTCGTCTTC
Found at i:24200109 original size:40 final size:40
Alignment explanation
Indices: 24200019--24200140 Score: 122
Period size: 40 Copynumber: 3.0 Consensus size: 40
24200009 AAATGAAGAA
* * ** *
24200019 GTGCCTCTGTTTGTACTTCGATACCCTTGTTTGCACATTA-
1 GTGCCTCTGTTTGTACTTCGGTACCCCTAATAGCAC-TTAC
* *
24200059 GTGCAC-CTGTTTGTATTTTGGTACCCCTAATAGCACTTAC
1 GTGC-CTCTGTTTGTACTTCGGTACCCCTAATAGCACTTAC
* * *
24200099 GTGCCTCTGTTTGTACTTCGGTACCCCTGATTGCATTTAC
1 GTGCCTCTGTTTGTACTTCGGTACCCCTAATAGCACTTAC
24200139 GT
1 GT
24200141 ACCCTTGTCT
Statistics
Matches: 67, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
39 4 0.06
40 62 0.93
41 1 0.01
ACGTcount: A:0.16, C:0.25, G:0.19, T:0.40
Consensus pattern (40 bp):
GTGCCTCTGTTTGTACTTCGGTACCCCTAATAGCACTTAC
Found at i:24204805 original size:75 final size:75
Alignment explanation
Indices: 24204603--24204805 Score: 183
Period size: 75 Copynumber: 2.7 Consensus size: 75
24204593 CAGTGCCTAG
* * *
24204603 TGGATAAATCGCAATGGAGTTTGTGCCAAGCACTAGTCGGGT-TAGCCGATGATATTGAAAATGA
1 TGGATAAA-C-CAACGGTGTTTGTGCCAAGCGCTAGTCGGGTATA-CCGATGATATTGAAAATGA
* * *
24204667 GCCTAGCTCTAGT
63 GCCCAACTCTAAT
* ** ** * * * * * * **
24204680 TGGATGAACCAACAATGTTTGCACCCAGCGCTAGTCAGATATGCCAATGATGTTGAATGTGAGCC
1 TGGATAAACCAACGGTGTTTGTGCCAAGCGCTAGTCGGGTATACCGATGATATTGAAAATGAGCC
24204745 CAACTCTAAT
66 CAACTCTAAT
* *
24204755 TGGATAAACCAACGGTGTTTGTGCCTAGTGCTAGTCGGGTATACCGATGAT
1 TGGATAAACCAACGGTGTTTGTGCCAAGCGCTAGTCGGGTATACCGATGAT
24204806 TGTGTGCCCA
Statistics
Matches: 95, Mismatches: 30, Indels: 4
0.74 0.23 0.03
Matches are distributed among these distances:
75 86 0.91
76 2 0.02
77 7 0.07
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (75 bp):
TGGATAAACCAACGGTGTTTGTGCCAAGCGCTAGTCGGGTATACCGATGATATTGAAAATGAGCC
CAACTCTAAT
Found at i:24208698 original size:447 final size:447
Alignment explanation
Indices: 24207864--24208761 Score: 1643
Period size: 447 Copynumber: 2.0 Consensus size: 447
24207854 GCTGCTTTCA
24207864 AACTATCTCGGATCACTTTTACTTTTTCTTCAGTCTCACGAATCAAATTAACCACGTGTATCTTT
1 AACTATCTCGGATCACTTTTACTTTTTCTTCAGTCTCACGAATCAAATTAACCACGTGTATCTTT
*
24207929 TTCTCACTGATCTCAGTCTAGTGTAACAGATTTTGGCATTTATGACCATACAGAGCTTCATACGG
66 TTCTCACTGATCTCAGTCTAGTGTAACAGATTTTGGCATTTACGACCATACAGAGCTTCATACGG
24207994 TGCCATCTTTACGCTCGACTGATAACTGTTATTTTACGTGAATTCAACCAATGGAAAATATTTCT
131 TGCCATCTTTACGCTCGACTGATAACTGTTATTTTACGTGAATTCAACCAATGGAAAATATTTCT
*
24208059 CCCAGCTGCGTTCGAACTCTAATACACAACAACAAAGCATATCCTCGAGTATCTAAATTACTCGC
196 CCCAGCTGCGTTCAAACTCTAATACACAACAACAAAGCATATCCTCGAGTATCTAAATTACTCGC
* * *
24208124 TCAGACTGATCGTCGGTCTGAGGATGAAATGCAGTTCTAAAATGCAACCGCATACGAAGAGCTTC
261 TCAAACTGATCGTCGGTCTGAGGATGAAATGCAATTCTAAAATGCAACCGCATACCAAGAGCTTC
*
24208189 CTATAACTTTTTCCAAAATCTTGACACAAATCGCGGATCTCTATTCAAAATGATGGAAACTGGTA
326 CTATAACTTTTTCCAAAATCTTGACACAAATCGCGAATCTCTATTCAAAATGATGGAAACTGGTA
24208254 CTCCGTGCAATCTAACAATCTAAGAAATGTATAATTCATATAATCTCTCAAGGGAGT
391 CTCCGTGCAATCTAACAATCTAAGAAATGTATAATTCATATAATCTCTCAAGGGAGT
* *
24208311 AACTATCTCGTATCACTTTTACTTTTTCTTTAGTCTCACGAATCAAATTAACCACGTGTATCTTT
1 AACTATCTCGGATCACTTTTACTTTTTCTTCAGTCTCACGAATCAAATTAACCACGTGTATCTTT
* *
24208376 TTCTCACTGATCTTAGTCTAGTGTAACAGATTTTGGCATTTACGACCATACAGATCTTCATACGG
66 TTCTCACTGATCTCAGTCTAGTGTAACAGATTTTGGCATTTACGACCATACAGAGCTTCATACGG
*
24208441 TGCCATCTTTACGCTCGACTGATAATTGTTATTTTACGTGAATTCAACCAATGGAAAATATTTCT
131 TGCCATCTTTACGCTCGACTGATAACTGTTATTTTACGTGAATTCAACCAATGGAAAATATTTCT
* *
24208506 CCCAGTTGCGTTCAAACTCTAATACATAACAACAAAGCATATCCTCGAGTATCTAAATTACTCGC
196 CCCAGCTGCGTTCAAACTCTAATACACAACAACAAAGCATATCCTCGAGTATCTAAATTACTCGC
*
24208571 TCAAACTGATCGTCGGTCTGAGGATGAGATGCAATTCTAAAATGCAACCGCATACCAAGAGCTTC
261 TCAAACTGATCGTCGGTCTGAGGATGAAATGCAATTCTAAAATGCAACCGCATACCAAGAGCTTC
*
24208636 CTGTAACTTTTTCCAAAATCTTGACACAAATCGCGAATCTCTATTCAAAATGATGGAAACTGGTA
326 CTATAACTTTTTCCAAAATCTTGACACAAATCGCGAATCTCTATTCAAAATGATGGAAACTGGTA
* *
24208701 CTCCGTGCAATCTGACAATCTAAGAAATGTATAATTCATCTAATCTCTCAAGGGAGT
391 CTCCGTGCAATCTAACAATCTAAGAAATGTATAATTCATATAATCTCTCAAGGGAGT
24208758 AACT
1 AACT
24208762 TGTACGTACC
Statistics
Matches: 434, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
447 434 1.00
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (447 bp):
AACTATCTCGGATCACTTTTACTTTTTCTTCAGTCTCACGAATCAAATTAACCACGTGTATCTTT
TTCTCACTGATCTCAGTCTAGTGTAACAGATTTTGGCATTTACGACCATACAGAGCTTCATACGG
TGCCATCTTTACGCTCGACTGATAACTGTTATTTTACGTGAATTCAACCAATGGAAAATATTTCT
CCCAGCTGCGTTCAAACTCTAATACACAACAACAAAGCATATCCTCGAGTATCTAAATTACTCGC
TCAAACTGATCGTCGGTCTGAGGATGAAATGCAATTCTAAAATGCAACCGCATACCAAGAGCTTC
CTATAACTTTTTCCAAAATCTTGACACAAATCGCGAATCTCTATTCAAAATGATGGAAACTGGTA
CTCCGTGCAATCTAACAATCTAAGAAATGTATAATTCATATAATCTCTCAAGGGAGT
Found at i:24214864 original size:21 final size:21
Alignment explanation
Indices: 24214825--24214883 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
24214815 TCAGCACACT
* *
24214825 CAGATGCATCCAAAACAAAGC
1 CAGATGCATCCACAACAAAAC
* *
24214846 CAGATGCATCCACACCAAAAT
1 CAGATGCATCCACAACAAAAC
*
24214867 CAGATGCAGCCACAACA
1 CAGATGCATCCACAACA
24214884 CTTTTCAATA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.44, C:0.32, G:0.14, T:0.10
Consensus pattern (21 bp):
CAGATGCATCCACAACAAAAC
Found at i:24222592 original size:90 final size:90
Alignment explanation
Indices: 24222498--24222667 Score: 227
Period size: 90 Copynumber: 1.9 Consensus size: 90
24222488 AGTTCAAAAG
* **** * *
24222498 CCAAAGCTATCCCTTTTCATAATTTGATGGTTGCCA-CCATCCCTTTTCAT-TGTTCGATGGTCT
1 CCAAAGCTATCCCTTTTCATAATTCGATAACCG-AAGCCATCCCTTTTCATAT-TTCGATGGTCG
24222561 TCACCATCCCTTTTCATAATTTGATAA
64 TCACCATCCCTTTTCATAATTTGATAA
*
24222588 CCAAAGCTATCCCTTTTCATAGTTCGATAACCGAAGCCATCCCTTTTCATATTTCGATGGTCGTC
1 CCAAAGCTATCCCTTTTCATAATTCGATAACCGAAGCCATCCCTTTTCATATTTCGATGGTCGTC
*
24222653 AGCATCCCTTTTCAT
66 ACCATCCCTTTTCAT
24222668 TGTTTTTGGT
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
89 1 0.01
90 67 0.97
91 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.12, T:0.38
Consensus pattern (90 bp):
CCAAAGCTATCCCTTTTCATAATTCGATAACCGAAGCCATCCCTTTTCATATTTCGATGGTCGTC
ACCATCCCTTTTCATAATTTGATAA
Found at i:24222600 original size:30 final size:30
Alignment explanation
Indices: 24222564--24222645 Score: 119
Period size: 30 Copynumber: 2.7 Consensus size: 30
24222554 ATGGTCTTCA
*
24222564 CCATCCCTTTTCATAATTTGATAACCAAAG
1 CCATCCCTTTTCATAATTCGATAACCAAAG
* * *
24222594 CTATCCCTTTTCATAGTTCGATAACCGAAG
1 CCATCCCTTTTCATAATTCGATAACCAAAG
*
24222624 CCATCCCTTTTCATATTTCGAT
1 CCATCCCTTTTCATAATTCGAT
24222646 GGTCGTCAGC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 46 1.00
ACGTcount: A:0.27, C:0.28, G:0.09, T:0.37
Consensus pattern (30 bp):
CCATCCCTTTTCATAATTCGATAACCAAAG
Found at i:24222659 original size:30 final size:30
Alignment explanation
Indices: 24222506--24222667 Score: 109
Period size: 30 Copynumber: 5.4 Consensus size: 30
24222496 AGCCAAAGCT
* * *
24222506 ATCCCTTTTCATAATTT-GATGGTTGCCACC
1 ATCCCTTTTCAT-ATTTCGATGGTCGTCAGC
* *
24222536 ATCCCTTTTCAT-TGTTCGATGGTCTTCACC
1 ATCCCTTTTCATAT-TTCGATGGTCGTCAGC
** ***
24222566 ATCCCTTTTCATAATTT-GAT-AACCAAAGC
1 ATCCCTTTTCAT-ATTTCGATGGTCGTCAGC
* *** *
24222595 TATCCCTTTTCATAGTTCGATAACCG-AAGCC
1 -ATCCCTTTTCATATTTCGATGGTCGTCAG-C
24222626 ATCCCTTTTCATATTTCGATGGTCGTCAGC
1 ATCCCTTTTCATATTTCGATGGTCGTCAGC
24222656 ATCCCTTTTCAT
1 ATCCCTTTTCAT
24222668 TGTTTTTGGT
Statistics
Matches: 106, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
28 1 0.01
29 8 0.08
30 89 0.84
31 7 0.07
32 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.12, T:0.39
Consensus pattern (30 bp):
ATCCCTTTTCATATTTCGATGGTCGTCAGC
Found at i:24225022 original size:27 final size:27
Alignment explanation
Indices: 24224983--24225239 Score: 352
Period size: 27 Copynumber: 9.5 Consensus size: 27
24224973 GATTCATGGG
* *
24224983 AAAATGACAGAAATGCCCTTGAAGGGT
1 AAAATGACCGAAATACCCTTGAAGGGT
*
24225010 AAAATGACCGAAATACCCTTGAATGGT
1 AAAATGACCGAAATACCCTTGAAGGGT
* *
24225037 AAAATGACTGAAATACCCTCGAAGGGT
1 AAAATGACCGAAATACCCTTGAAGGGT
24225064 AAAATGACCGAAATACCCTTGAAGGGT
1 AAAATGACCGAAATACCCTTGAAGGGT
* **
24225091 AAAATGACCAAAATACCCCCGAAGGGT
1 AAAATGACCGAAATACCCTTGAAGGGT
* * *
24225118 AACATGACCAAAATACCCTAGAAGGGT
1 AAAATGACCGAAATACCCTTGAAGGGT
* *
24225145 AAAATGATCGAAATACCCTCGAAGGGT
1 AAAATGACCGAAATACCCTTGAAGGGT
* * *
24225172 AAAATGACCAAAATATCCTTAAAGGGT
1 AAAATGACCGAAATACCCTTGAAGGGT
**
24225199 AAAATGACCGAAATACCCCGGAAGGGT
1 AAAATGACCGAAATACCCTTGAAGGGT
24225226 AAAATGACCGAAAT
1 AAAATGACCGAAAT
24225240 GATCAAAATG
Statistics
Matches: 202, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 202 1.00
ACGTcount: A:0.43, C:0.19, G:0.21, T:0.17
Consensus pattern (27 bp):
AAAATGACCGAAATACCCTTGAAGGGT
Found at i:24225274 original size:63 final size:63
Alignment explanation
Indices: 24225173--24225296 Score: 178
Period size: 63 Copynumber: 2.0 Consensus size: 63
24225163 TCGAAGGGTA
* *
24225173 AAATGACCAAAATATCCTTAAAGGGTAAAATGACCGAAATACCC-CGGAAGGGTAAAATGACCG
1 AAATGACCAAAATACCCTCAAAGGGTAAAATGACCGAAATACCCTC-GAAGGGTAAAATGACCG
* * * *
24225236 AAATGATCAAAATGCCCTCAAAGGGTAAAATGATCGAAATACCCTCGTAGGGTAAAATGAC
1 AAATGACCAAAATACCCTCAAAGGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATGAC
24225297 AGTTATACCC
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 53 0.98
64 1 0.02
ACGTcount: A:0.44, C:0.19, G:0.20, T:0.18
Consensus pattern (63 bp):
AAATGACCAAAATACCCTCAAAGGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATGACCG
Found at i:24225275 original size:27 final size:27
Alignment explanation
Indices: 24225236--24225295 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
24225226 AAAATGACCG
*
24225236 AAATGATCAAAATGCCCTCAAAGGGTA
1 AAATGATCAAAATACCCTCAAAGGGTA
* **
24225263 AAATGATCGAAATACCCTCGTAGGGTA
1 AAATGATCAAAATACCCTCAAAGGGTA
24225290 AAATGA
1 AAATGA
24225296 CAGTTATACC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.43, C:0.17, G:0.20, T:0.20
Consensus pattern (27 bp):
AAATGATCAAAATACCCTCAAAGGGTA
Found at i:24236321 original size:22 final size:21
Alignment explanation
Indices: 24236296--24236339 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
24236286 TGATAAAATT
24236296 TAATATATA-ATTATATTATTTA
1 TAATATATATATTA-ATT-TTTA
*
24236318 TAATTTATATATTAATTTTTA
1 TAATATATATATTAATTTTTA
24236339 T
1 T
24236340 CAACTTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 5 0.25
22 11 0.55
23 4 0.20
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TAATATATATATTAATTTTTA
Found at i:24245863 original size:50 final size:51
Alignment explanation
Indices: 24245791--24245925 Score: 166
Period size: 50 Copynumber: 2.7 Consensus size: 51
24245781 ATTATCATTT
* * *
24245791 GATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAA-CTTTTCA
1 GATACACATAGTAGCCTGCACATAGTACTACACACGTGATCAAATC-TATCA
* * *
24245842 G-TTCACATAGTAGCCTGCACATAGTACTACACACGTGATCGAATCTATCC
1 GATACACATAGTAGCCTGCACATAGTACTACACACGTGATCAAATCTATCA
* * *
24245892 GATACGCATAATAGCCTGCACATAGTACCACACA
1 GATACACATAGTAGCCTGCACATAGTACTACACA
24245926 TGCGACCTTT
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
50 42 0.58
51 30 0.42
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.24
Consensus pattern (51 bp):
GATACACATAGTAGCCTGCACATAGTACTACACACGTGATCAAATCTATCA
Found at i:24247195 original size:27 final size:27
Alignment explanation
Indices: 24247146--24247446 Score: 333
Period size: 27 Copynumber: 11.1 Consensus size: 27
24247136 ATTCATGGGC
* * *
24247146 AAATGACCGAAATGCCCTTGAAGGGTA
1 AAATGATCGAAATACCCTCGAAGGGTA
* * *
24247173 AAATGACCGGAATACACTCGAAGGGTA
1 AAATGATCGAAATACCCTCGAAGGGTA
*
24247200 AAATGATCGAAACACCC-CTGAAGGGTA
1 AAATGATCGAAATACCCTC-GAAGGGTA
**
24247227 AAATGATCGAAATACCCTTTAAGGGTA
1 AAATGATCGAAATACCCTCGAAGGGTA
* *
24247254 AAATGAACGAAATACCTTCGAAGGGTA
1 AAATGATCGAAATACCCTCGAAGGGTA
*
24247281 AAATGATCGAAATACCCTCGAAGAGTA
1 AAATGATCGAAATACCCTCGAAGGGTA
*
24247308 AAATGATTGAAATACCCTCGAAGGGT-
1 AAATGATCGAAATACCCTCGAAGGGTA
* *
24247334 AAATGACCGAAATACTCCT-AAAGGGTAA
1 AAATGATCGAAATAC-CCTCGAAGGGT-A
* * * *
24247362 AAATGACCAAAATGCCTTCGAAGGGTA
1 AAATGATCGAAATACCCTCGAAGGGTA
*
24247389 AAATGAACGAAATACCC-CTGAAGGGTA
1 AAATGATCGAAATACCCTC-GAAGGGTA
*
24247416 AAATGATCGAAATACCC-CCATAGGGTA
1 AAATGATCGAAATACCCTCGA-AGGGTA
24247443 AAAT
1 AAAT
24247447 AACTGTTATA
Statistics
Matches: 233, Mismatches: 33, Indels: 16
0.83 0.12 0.06
Matches are distributed among these distances:
26 22 0.09
27 192 0.82
28 19 0.08
ACGTcount: A:0.42, C:0.18, G:0.21, T:0.19
Consensus pattern (27 bp):
AAATGATCGAAATACCCTCGAAGGGTA
Found at i:24247882 original size:28 final size:28
Alignment explanation
Indices: 24247842--24247906 Score: 121
Period size: 28 Copynumber: 2.3 Consensus size: 28
24247832 CCCACATTAC
24247842 ACTGTTACTACTTAGGGCTAAGGCTCAG
1 ACTGTTACTACTTAGGGCTAAGGCTCAG
*
24247870 ACTGTTACTACTTAGGGCTAAGGCTCTG
1 ACTGTTACTACTTAGGGCTAAGGCTCAG
24247898 ACTGTTACT
1 ACTGTTACT
24247907 GCATGTCGTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (28 bp):
ACTGTTACTACTTAGGGCTAAGGCTCAG
Found at i:24249901 original size:167 final size:170
Alignment explanation
Indices: 24249570--24249908 Score: 456
Period size: 172 Copynumber: 2.0 Consensus size: 170
24249560 GGGGGGAAGT
* * * *
24249570 TGTAATAGCCTGTTTTTCACTGTTGTCGAAAATAATGGTTTCAGGGCCACAAACCTGACGAGTAA
1 TGTAACAGCCCGTTTTTCACTGGTGTCGAAAATAATAGTTTCAGGGCCACAAACCTGACGAGTAA
*
24249635 GTTCATAAATATTATTATTTAATATTTACAAGTCAAACATGGTTTTAAAAAGGTTTTTGATTTAG
66 GTTCATAAATATTATTATTTAATATTTACAAGTCAAACA--GTATTAAAAAGGTTTTTGATTTAG
* * *
24249700 TGATTTATGTTATATGAATGATTTATTAAGTTCAAGTGGTAA
129 TAATTTATGTTATATGAACGATTTATAAAGTTCAAGTGGTAA
* * * *
24249742 TGTAACAGCCCGTTTTTCAGTGGTGTCGGAAATAGTAGTTTCAGGGCCACCAAATCTGACGAGTA
1 TGTAACAGCCCGTTTTTCACTGGTGTCGAAAATAATAGTTTCAGGGCCA-CAAACCTGACGAGTA
** *
24249807 AGTTTGTAAA-ATTATTATTTAATATTTACGAGTC-AA-A-TATTAAAAAGGTTTTTGATTT-GA
65 AGTTCATAAATATTATTATTTAATATTTACAAGTCAAACAGTATTAAAAAGGTTTTTGATTTAG-
24249867 TAATTTATGTTATAT-AAGCGATTTATAAAGTTCAAGTGGTAA
129 TAATTTATGTTATATGAA-CGATTTATAAAGTTCAAGTGGTAA
24249909 CACCCTAAGA
Statistics
Matches: 149, Mismatches: 15, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
166 3 0.02
167 56 0.38
170 1 0.01
171 2 0.01
172 65 0.44
173 22 0.15
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.38
Consensus pattern (170 bp):
TGTAACAGCCCGTTTTTCACTGGTGTCGAAAATAATAGTTTCAGGGCCACAAACCTGACGAGTAA
GTTCATAAATATTATTATTTAATATTTACAAGTCAAACAGTATTAAAAAGGTTTTTGATTTAGTA
ATTTATGTTATATGAACGATTTATAAAGTTCAAGTGGTAA
Found at i:24250540 original size:18 final size:18
Alignment explanation
Indices: 24250503--24250540 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
24250493 TAAATGATGA
24250503 ATTTTAAATATTAGTTGTT
1 ATTTTAAATATTA-TTGTT
24250522 ATTTTAAAGTATT-TTGTT
1 ATTTTAAA-TATTATTGTT
24250540 A
1 A
24250541 AGTGATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 8 0.44
20 4 0.22
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.58
Consensus pattern (18 bp):
ATTTTAAATATTATTGTT
Found at i:24251441 original size:120 final size:121
Alignment explanation
Indices: 24251188--24251443 Score: 327
Period size: 120 Copynumber: 2.1 Consensus size: 121
24251178 GTGTTATACT
* *
24251188 CTCTATTTGGCGTG-TTCTGGTTGGATCAACTCTCATGAGCTTCTGTTTGGCGTGTTTTGGTTGG
1 CTCTATTTGGTGTGTTTCTGGTTGGATCAACTCTCATGAGCTTCTATTTGGCGTGTTTTGGTTGG
* * * * *
24251252 ATCAGCTCTTATGAGCTTCTGTTTAGCGTCTTTCGGTTGAATCAGCTCTTATGAGC
66 ATAAACTCTTATGAGCTTCTGTTTAGCGTCTTTCAGTTGAATCAACTCTTACGAGC
* * * * * *
24251308 TTCTGTTTAGTGTGTTTC-GGTTGGATCAACTCTTATGAGCTTTTATTTGGCGTTTTTTGGTTGG
1 CTCTATTTGGTGTGTTTCTGGTTGGATCAACTCTCATGAGCTTCTATTTGGCGTGTTTTGGTTGG
* * * * *
24251372 ATAAACTCTTATGAGCTTTTGTTTGGTGTGTTTCAGTTGGATCAACTCTTACGAGC
66 ATAAACTCTTATGAGCTTCTGTTTAGCGTCTTTCAGTTGAATCAACTCTTACGAGC
*
24251428 CTCTATCTGGTGTGTT
1 CTCTATTTGGTGTGTT
24251444 CGATTTATCT
Statistics
Matches: 113, Mismatches: 22, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
120 110 0.97
121 3 0.03
ACGTcount: A:0.14, C:0.16, G:0.25, T:0.45
Consensus pattern (121 bp):
CTCTATTTGGTGTGTTTCTGGTTGGATCAACTCTCATGAGCTTCTATTTGGCGTGTTTTGGTTGG
ATAAACTCTTATGAGCTTCTGTTTAGCGTCTTTCAGTTGAATCAACTCTTACGAGC
Found at i:24251443 original size:40 final size:40
Alignment explanation
Indices: 24251193--24251427 Score: 292
Period size: 40 Copynumber: 5.9 Consensus size: 40
24251183 ATACTCTCTA
*
24251193 TTTGGCGTG-TTCTGGTTGGATCAACTCTCATGAGCTTCTG
1 TTTGGCGTGTTTC-GGTTGGATCAACTCTTATGAGCTTCTG
* *
24251233 TTTGGCGTGTTTTGGTTGGATCAGCTCTTATGAGCTTCTG
1 TTTGGCGTGTTTCGGTTGGATCAACTCTTATGAGCTTCTG
* * * *
24251273 TTTAGCGTCTTTCGGTTGAATCAGCTCTTATGAGCTTCTG
1 TTTGGCGTGTTTCGGTTGGATCAACTCTTATGAGCTTCTG
* * * *
24251313 TTTAGTGTGTTTCGGTTGGATCAACTCTTATGAGCTTTTA
1 TTTGGCGTGTTTCGGTTGGATCAACTCTTATGAGCTTCTG
* * * *
24251353 TTTGGCGTTTTTTGGTTGGATAAACTCTTATGAGCTTTTG
1 TTTGGCGTGTTTCGGTTGGATCAACTCTTATGAGCTTCTG
* * *
24251393 TTTGGTGTGTTTCAGTTGGATCAACTCTTACGAGC
1 TTTGGCGTGTTTCGGTTGGATCAACTCTTATGAGC
24251428 CTCTATCTGG
Statistics
Matches: 169, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
40 167 0.99
41 2 0.01
ACGTcount: A:0.14, C:0.16, G:0.26, T:0.44
Consensus pattern (40 bp):
TTTGGCGTGTTTCGGTTGGATCAACTCTTATGAGCTTCTG
Found at i:24255025 original size:19 final size:20
Alignment explanation
Indices: 24254977--24255026 Score: 54
Period size: 19 Copynumber: 2.6 Consensus size: 20
24254967 GAAAGTATAC
24254977 TAATGTTC-ATGAAATTGAT
1 TAATGTTCAATGAAATTGAT
*
24254996 T-AT-TTCAAATGAAGTTG-T
1 TAATGTTC-AATGAAATTGAT
24255014 TAATGTTCAATGA
1 TAATGTTCAATGA
24255027 CTTACCTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 3 0.12
18 4 0.15
19 16 0.62
20 3 0.12
ACGTcount: A:0.36, C:0.06, G:0.16, T:0.42
Consensus pattern (20 bp):
TAATGTTCAATGAAATTGAT
Found at i:24264050 original size:51 final size:51
Alignment explanation
Indices: 24263952--24264172 Score: 173
Period size: 51 Copynumber: 4.4 Consensus size: 51
24263942 TATGAACACG
* * *
24263952 TGTGTAGTACTAAGTGCAGGCTACTACT-TGTATCG-ATAGATAATGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTA-TGTGTACCGAAT-GACAATGGTCACA
** **
24264003 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATGACCTTGGTCATG
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATGACAATGGTCACA
* * * * * * * * *
24264054 TGTATAGTACTATGTACAGGCTAATATGTGAACTGGAAAG-C-TTGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTAC-CGAATGACAATGGTCACA
* * * * *
24264104 TCTGTAGTACTATGTGTAGGCTACTACGTGTATCAAATGACAATGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATGACAATGGTCACA
*
24264155 TCG-GTGGTACTATGTGCA
1 T-GTGTAGTACTATGTGCA
24264173 AACCACTAAA
Statistics
Matches: 132, Mismatches: 32, Indels: 12
0.75 0.18 0.07
Matches are distributed among these distances:
49 3 0.02
50 34 0.26
51 89 0.67
52 6 0.05
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (51 bp):
TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGAATGACAATGGTCACA
Found at i:24264125 original size:50 final size:50
Alignment explanation
Indices: 24264005--24264126 Score: 129
Period size: 50 Copynumber: 2.4 Consensus size: 50
24263995 TGGTCACATG
* * * * *
24264005 TGTAGTACTATGTGCAGGCTACTATGTGTACCGAATGACCTTGGTCATGTG
1 TGTAGTACTATGTGCAGGCTAATATGTGAACCGAA-GACCTTGATCACGTC
* * * *
24264056 TATAGTACTATGTACAGGCTAATATGTGAACTGGAA-AGCTTGATCACGTC
1 TGTAGTACTATGTGCAGGCTAATATGTGAAC-CGAAGACCTTGATCACGTC
*
24264106 TGTAGTACTATGTGTAGGCTA
1 TGTAGTACTATGTGCAGGCTA
24264127 CTACGTGTAT
Statistics
Matches: 58, Mismatches: 12, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
50 28 0.48
51 27 0.47
52 3 0.05
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (50 bp):
TGTAGTACTATGTGCAGGCTAATATGTGAACCGAAGACCTTGATCACGTC
Found at i:24267976 original size:16 final size:15
Alignment explanation
Indices: 24267949--24267982 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
24267939 ATAACTAGTA
*
24267949 TATAATTATATTTAT
1 TATAATTATATTAAT
24267964 TATAATATATATTAAT
1 TATAAT-TATATTAAT
24267980 TAT
1 TAT
24267983 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Found at i:24277697 original size:16 final size:16
Alignment explanation
Indices: 24277676--24277707 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
24277666 TGATTGAAAG
*
24277676 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
24277692 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
24277708 GCAACGAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:24285830 original size:32 final size:32
Alignment explanation
Indices: 24285789--24285862 Score: 148
Period size: 32 Copynumber: 2.3 Consensus size: 32
24285779 GGTGGATATC
24285789 GCACTTAGCACCACCAATGAATCGGGGAATCA
1 GCACTTAGCACCACCAATGAATCGGGGAATCA
24285821 GCACTTAGCACCACCAATGAATCGGGGAATCA
1 GCACTTAGCACCACCAATGAATCGGGGAATCA
24285853 GCACTTAGCA
1 GCACTTAGCA
24285863 ACCCCTCGGG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.34, C:0.28, G:0.22, T:0.16
Consensus pattern (32 bp):
GCACTTAGCACCACCAATGAATCGGGGAATCA
Found at i:24293721 original size:12 final size:12
Alignment explanation
Indices: 24293704--24293729 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
24293694 TCTTCATCTT
24293704 CACCTCCACCTC
1 CACCTCCACCTC
24293716 CACCTCCACCTC
1 CACCTCCACCTC
24293728 CA
1 CA
24293730 TCTTGATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.65, G:0.00, T:0.15
Consensus pattern (12 bp):
CACCTCCACCTC
Found at i:24294516 original size:25 final size:25
Alignment explanation
Indices: 24294477--24294648 Score: 154
Period size: 25 Copynumber: 7.0 Consensus size: 25
24294467 TCATTAGGGC
*
24294477 TACCGAT-TTCAGCTCTTATGAGCT
1 TACCGATATTCAGCTCGTATGAGCT
*
24294501 TACCGATACTCAGCTCGTATGAGCT
1 TACCGATATTCAGCTCGTATGAGCT
* * * * *
24294526 TACCGTTATTCAGCTTGGAGGAGTT
1 TACCGATATTCAGCTCGTATGAGCT
* * *
24294551 TACCGTTATTCAGCTCGAAGGAGCT
1 TACCGATATTCAGCTCGTATGAGCT
* * *
24294576 TACCGTTATTCAGCTCGAAGGAGCT
1 TACCGATATTCAGCTCGTATGAGCT
* * *
24294601 TACCGTTATTTAGCTCAG-AAGAGCT
1 TACCGATATTCAGCTC-GTATGAGCT
24294626 TACCG-T-TTACAGCTCGTATGAGC
1 TACCGATATT-CAGCTCGTATGAGC
24294649 ATACATGTAC
Statistics
Matches: 129, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
23 3 0.02
24 18 0.14
25 107 0.83
26 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.31
Consensus pattern (25 bp):
TACCGATATTCAGCTCGTATGAGCT
Found at i:24294538 original size:50 final size:49
Alignment explanation
Indices: 24294484--24294648 Score: 188
Period size: 50 Copynumber: 3.3 Consensus size: 49
24294474 GGCTACCGAT
* * * * *
24294484 TTCAGCTCTTATGAGCTTACCGATACTCAGCTCGTATGAGCTTACCGTTA
1 TTCAGCTCGTAGGAGCTTACCGTTATTCAGCTCG-AAGAGCTTACCGTTA
* * *
24294534 TTCAGCTTGGAGGAGTTTACCGTTATTCAGCTCGAAGGAGCTTACCGTTA
1 TTCAGCTCGTAGGAGCTTACCGTTATTCAGCTCGAA-GAGCTTACCGTTA
* *
24294584 TTCAGCTCGAAGGAGCTTACCGTTATTTAGCTCAGAAGAGCTTACCGTT-
1 TTCAGCTCGTAGGAGCTTACCGTTATTCAGCTC-GAAGAGCTTACCGTTA
* *
24294633 TACAGCTCGTATGAGC
1 TTCAGCTCGTAGGAGC
24294649 ATACATGTAC
Statistics
Matches: 98, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
49 14 0.14
50 81 0.83
51 3 0.03
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (49 bp):
TTCAGCTCGTAGGAGCTTACCGTTATTCAGCTCGAAGAGCTTACCGTTA
Found at i:24294607 original size:75 final size:74
Alignment explanation
Indices: 24294496--24294641 Score: 193
Period size: 75 Copynumber: 2.0 Consensus size: 74
24294486 CAGCTCTTAT
* * ** * * *
24294496 GAGCTTACCGATACTCAGCTCGTATGAGCTTACCGTTATTCAGCTTGGAGGAGTTTACCGTTATT
1 GAGCTTACCGATACTCAGCTCGAAGGAGCTTACCGTTATTCAGCTCAGAAGAGCTTACCGTT-TA
24294561 CAGCTCGAAG
65 CAGCTCGAAG
* * *
24294571 GAGCTTACCGTTATTCAGCTCGAAGGAGCTTACCGTTATTTAGCTCAGAAGAGCTTACCGTTTAC
1 GAGCTTACCGATACTCAGCTCGAAGGAGCTTACCGTTATTCAGCTCAGAAGAGCTTACCGTTTAC
24294636 AGCTCG
66 AGCTCG
24294642 TATGAGCATA
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
74 8 0.13
75 53 0.87
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.30
Consensus pattern (74 bp):
GAGCTTACCGATACTCAGCTCGAAGGAGCTTACCGTTATTCAGCTCAGAAGAGCTTACCGTTTAC
AGCTCGAAG
Found at i:24301824 original size:23 final size:23
Alignment explanation
Indices: 24301798--24301919 Score: 190
Period size: 23 Copynumber: 5.3 Consensus size: 23
24301788 ATAAGTGCCA
24301798 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
24301821 CACTGATACGTAGCCGAAACTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
24301844 CACTAAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
24301867 CACTGATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
24301890 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
24301913 CACTGAT
1 CACTGAT
24301920 CAATAACACT
Statistics
Matches: 87, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 87 1.00
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:24304524 original size:21 final size:22
Alignment explanation
Indices: 24304490--24304530 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
24304480 AGTGAAATAG
24304490 ATTTTAGTAAAATTA-AACACA
1 ATTTTAGTAAAATTATAACACA
24304511 ATTTT-GTAACAATTATAACA
1 ATTTTAGTAA-AATTATAACA
24304531 TAAATAAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 10 0.56
22 4 0.22
ACGTcount: A:0.49, C:0.10, G:0.05, T:0.37
Consensus pattern (22 bp):
ATTTTAGTAAAATTATAACACA
Found at i:24305340 original size:34 final size:34
Alignment explanation
Indices: 24305295--24305364 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
24305285 GAGGGGGAAA
*
24305295 GATAGCTAAGAGATTTGAGAGAGGAGAGAATGAT
1 GATAGCAAAGAGATTTGAGAGAGGAGAGAATGAT
24305329 GATAGCAAAGAGATTTGAGAGAGGAGAGAATGAT
1 GATAGCAAAGAGATTTGAGAGAGGAGAGAATGAT
24305363 GA
1 GA
24305365 ATGAGTGAGG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.43, C:0.03, G:0.36, T:0.19
Consensus pattern (34 bp):
GATAGCAAAGAGATTTGAGAGAGGAGAGAATGAT
Found at i:24310228 original size:132 final size:132
Alignment explanation
Indices: 24309991--24310747 Score: 1334
Period size: 132 Copynumber: 5.7 Consensus size: 132
24309981 CACTGCAACT
* ** * *
24309991 TTAGGGAGATAAGATTTGGTGGCTTAAATCTACTTCCCACTGTCTTGGAAAGATAAGATTCGCCG
1 TTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
* *
24310056 ACTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTATAATCTTTAACCTTCTCCGCTACT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTTAACCTTCTCCGCTACT
*
24310121 AC
131 GC
** *
24310123 TTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCATACTATCTTGGAAAGATAAGATTTGCCG
1 TTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
*
24310188 TCTTCGATCAGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTTAACCTTCTCCGCTACT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTTAACCTTCTCCGCTACT
24310253 GC
131 GC
* *
24310255 TTAGGGAGACAAGGCTTGGTGGCTTAAATATGCTTCCCACTATCTTGGAAAGATAAGATTCACCG
1 TTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
* *
24310320 TCTTCAATCTGCTTCACTACTGCTTAGGGAGATAAGATCTATAATCTTTAACCTTCTCCGCTACT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTTAACCTTCTCCGCTACT
24310385 GC
131 GC
24310387 TTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
1 TTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
*
24310452 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTACT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTTAACCTTCTCCGCTACT
24310517 GC
131 GC
*
24310519 TTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCG
1 TTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
*
24310584 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTACT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTTAACCTTCTCCGCTACT
24310649 GC
131 GC
24310651 TTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
1 TTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
*
24310716 TCTTCTATCTGCTCCACTACTGCTTAGGGAGA
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGA
24310748 CAAGGCTTGG
Statistics
Matches: 597, Mismatches: 28, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 597 1.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.31
Consensus pattern (132 bp):
TTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTTAACCTTCTCCGCTACT
GC
Found at i:24310476 original size:88 final size:88
Alignment explanation
Indices: 24310375--24310835 Score: 383
Period size: 88 Copynumber: 5.2 Consensus size: 88
24310365 CTTTAACCTT
*
24310375 CTCCGCTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGA
1 CTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGA
*
24310440 TAAGATTCGCCGTCTTCGATCTG
66 TAAGATTCGCCGTCTTCAATCTG
* * ** * *
24310463 CTCCACTACTGCTTAGGGAGATAAGATCTATAAT--CTTCAA-C--CTTCTCCGCTACTGCTTAG
1 CTCCACTACTGCTTAGGGAGACAAG-GCT-TGGTGGCTTAAATCTGCTTC-CCACTA-T-CTT-G
* * * ** * *
24310523 G-GAGACAAGGCTT-GGTGGCTTAAATCTG
60 GAAAGATAA-GATTCGCCGTCTTCAATCTG
* * ** ** * **
24310551 CTTCCCACTA-T-CTT-GGAAAGATAAGATTTGCCGTCTTCGATCTGC-T-CCACTACTGCTTAG
1 C-T-CCACTACTGCTTAGG-GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-G
* **** * *
24310611 G-GAGATAAGA-TCTATAATCTTCAACCTT
60 GAAAGATAAGATTC-GCCGTCTTCAATCTG
*
24310639 CTCCGCTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGA
1 CTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGA
*
24310704 TAAGATTCGCCGTCTTCTATCTG
66 TAAGATTCGCCGTCTTCAATCTG
24310727 CTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGA
1 CTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGA
* *
24310792 TAAGATTCACCGTCTTCGATCTG
66 TAAGATTCGCCGTCTTCAATCTG
24310815 CTCCACTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGA
24310836 TAAGATCTAC
Statistics
Matches: 295, Mismatches: 54, Indels: 48
0.74 0.14 0.12
Matches are distributed among these distances:
85 4 0.01
86 12 0.04
87 10 0.03
88 237 0.80
89 16 0.05
90 15 0.05
91 1 0.00
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (88 bp):
CTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGA
TAAGATTCGCCGTCTTCAATCTG
Found at i:24310745 original size:220 final size:220
Alignment explanation
Indices: 24310507--24310967 Score: 807
Period size: 220 Copynumber: 2.1 Consensus size: 220
24310497 CTTCAACCTT
*
24310507 CTCCGCTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGA
1 CTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGA
** *
24310572 TAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACC
66 TAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACC
* * * *
24310637 TTCTCCGCTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAA
131 TTCTCCACTACTACTCAGGGAGACAAGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAA
24310702 GATAAGATTCGCCGTCTTCT-ATCTG
196 GATAAGATTCGCCGTCTT-TGATCTG
24310727 CTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGA
1 CTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGA
*
24310792 TAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACACTCTTCAACC
66 TAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACC
* *
24310857 TTCTCCACTACTACTCAGGGAGACAATGCTTGGTGGCTTGAATCTACTTCCCACTATCTTGGAAA
131 TTCTCCACTACTACTCAGGGAGACAAGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAA
24310922 GATAAGATTCGCCGTCTTTGATCTG
196 GATAAGATTCGCCGTCTTTGATCTG
24310947 CTCCACTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGA
24310968 TAAGATCTAC
Statistics
Matches: 229, Mismatches: 11, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
219 1 0.00
220 228 1.00
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (220 bp):
CTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGA
TAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACC
TTCTCCACTACTACTCAGGGAGACAAGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAA
GATAAGATTCGCCGTCTTTGATCTG
Found at i:24310785 original size:352 final size:352
Alignment explanation
Indices: 24310375--24311097 Score: 1284
Period size: 352 Copynumber: 2.1 Consensus size: 352
24310365 CTTTAACCTT
*
24310375 CTCCGCTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGA
1 CTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGA
* *
24310440 TAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACC
66 TAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACC
* * * *
24310505 TTCTCCGCTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAA
131 TTCTCCACTACTACTCAGGGAGACAAGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAA
* *
24310570 GATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAA
196 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAA
*
24310635 CCTTCTCCGCTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGA
261 CCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGA
*
24310700 AAGATAAGATTCGCCGTCTTCTATCTG
326 AAGATAAGATTCGCCGTCTTCGATCTG
24310727 CTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGA
1 CTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGA
*
24310792 TAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACACTCTTCAACC
66 TAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACC
* *
24310857 TTCTCCACTACTACTCAGGGAGACAATGCTTGGTGGCTTGAATCTACTTCCCACTATCTTGGAAA
131 TTCTCCACTACTACTCAGGGAGACAAGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAA
*
24310922 GATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAA
196 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAA
* * *
24310987 CCTTCTCTGCTGCTGCTCAGGGAGACAAGGCTTGGTGTCTTAAATCTGCTTCCCACTATCTTGGA
261 CCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGA
24311052 AAGATAAGATTCGCCGTCTTCGATCTG
326 AAGATAAGATTCGCCGTCTTCGATCTG
24311079 CTCCACTACTGCTTAGGGA
1 CTCCACTACTGCTTAGGGA
24311098 AATAAGATCT
Statistics
Matches: 353, Mismatches: 18, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
352 353 1.00
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.30
Consensus pattern (352 bp):
CTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGA
TAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACC
TTCTCCACTACTACTCAGGGAGACAAGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAA
GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAA
CCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGA
AAGATAAGATTCGCCGTCTTCGATCTG
Found at i:24310814 original size:132 final size:132
Alignment explanation
Indices: 24310700--24311417 Score: 968
Period size: 132 Copynumber: 5.4 Consensus size: 132
24310690 CTATCTTGGA
* * *
24310700 AAGATAAGATTCGCCGTCTTCTATCTGCTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTTA
1 AAGATAAGATTCGCCGTCTTCAACCTTCTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTTA
*
24310765 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTA
66 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
24310830 GG
131 GG
* * * * *
24310832 GAGATAAGATCTAC-AC-TCTTCAACCTTCTCCACTACTACTCAGGGAGACAATGCTTGGTGGCT
1 AAGATAAGAT-T-CGCCGTCTTCAACCTTCTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCT
* * *
24310895 TGAATCTACTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCT
64 TAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCT
24310960 TAGG
129 TAGG
* * ** ** * * *
24310964 GAGATAAGA-TCTACAATCTTCAACCTTCTCTGCTGCTGCTCAGGGAGACAAGGCTTGGTGTCTT
1 AAGATAAGATTC-GCCGTCTTCAACCTTCTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTT
24311028 AAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTT
65 AAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTT
24311093 AGGG
130 A-GG
*
24311097 AA-ATAAGATCTAC-AC-TCTTCAACCTTCTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCT
1 AAGATAAGAT-T-CGCCGTCTTCAACCTTCTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCT
*
24311159 TAAATATGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCT
64 TAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCT
24311224 TAGG
129 TAGG
* * * * * * *
24311228 GAGAT-AGA-TCTACAGTCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGTCTT
1 AAGATAAGATTC-GCCGTCTTCAACCTTCTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTT
24311291 AAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTT
65 AAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTT
24311356 AGG
130 AGG
* ** * * * *
24311359 AAGATAAGA-TCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGACTTGGT
1 AAGATAAGATTC-GCCGTCTTCAACCTTCTCCACTACTGCTTAGGGAGACAAGGCTTGGT
24311418 TACCGATCTG
Statistics
Matches: 529, Mismatches: 43, Indels: 28
0.88 0.07 0.05
Matches are distributed among these distances:
128 1 0.00
129 2 0.00
130 1 0.00
131 121 0.23
132 396 0.75
133 5 0.01
134 2 0.00
135 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (132 bp):
AAGATAAGATTCGCCGTCTTCAACCTTCTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTTA
AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
GG
Found at i:24310839 original size:264 final size:262
Alignment explanation
Indices: 24310040--24311411 Score: 976
Period size: 264 Copynumber: 5.2 Consensus size: 262
24310030 CTGTCTTGGA
** * * *
24310040 AAGATAAGATTCGCCGACTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTATAATCTTT
1 AAGATAAGATTTACCGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTT
**
24310105 AACCTTCTCCGCTACTACTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCATACTATCTTG
66 AACCTTCTCCGCTACT-CTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTG
* * * * * **
24310170 GAAAGATAAGATTTGCCGTCTTCGATCAGCTCCACTACTGCTTAGGGAGATAAGATCTATAAT-C
130 GAAAGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGGAGACAAG-GCT-TGGTGC
* * * * * ** * ** *
24310234 TTTAA-C--CTTCTCCGCTACTGCTTAGG-GAGACAAGGCTT-GGTGGCTTAAATATGCTTCCCA
193 TTAAATCTGCTTC-CCACTA-T-CTT-GGAAAGATAA-GATTCGCCGTCTTCGATCTGC-T-CCA
24310294 CTA-T-CTT-GG
251 CTACTGCTTAGG
* *
24310303 AAAGATAAGATTCACCGTCTTCAATCTGCTTCACTACTGCTTAGGGAGATAAGATCTATAATCTT
1 -AAGATAAGATTTACCGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTT
24310368 TAACCTTCTCCGCTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTT
65 TAACCTTCTCCGCTACT-CTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTT
* * * **
24310433 GGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAAT-
129 GGAAAGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGGAGACAAG-GCT-TGGTG
* * * * * ** * **
24310497 CTTCAA-C--CTTCTCCGCTACTGCTTAGG-GAGACAAGGCTT-GGTGGCTTAAATCTGCTTCCC
192 CTTAAATCTGCTTC-CCACTA-T-CTT-GGAAAGATAA-GATTCGCCGTCTTCGATCTGC-T-CC
24310557 ACTA-T-CTT-GG
250 ACTACTGCTTAGG
* *
24310567 AAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTT
1 -AAGATAAGATTTACCGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTT
*
24310632 CAACCTTCTCCGCTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTT
65 TAACCTTCTCCGCTACT-CTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTT
*
24310697 GGAAAGATAAGATTCGCCGTCTTCTATCTGCTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGC
129 GGAAAGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGGAGACAAGGCTTGGT-GC
*
24310762 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGC
193 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGC
24310827 TTAGG
258 TTAGG
* * * * * * * **
24310832 GAGATAAGATCTACAC-TCTTCAACCTTCTCCACTACTACTCAGGGAGA-CA-ATGCT-TGGTGG
1 AAGATAAGATTTAC-CGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGAT-CTATAAT--
* * * * * ** * **
24310893 CTTGAATCTACTTC-CCACTA-TCTT-GGAAAGATAA-GATTCGCCGTCTTTGATCTGC-T-CCA
62 CTTTAA-C--CTTCTCCGCTACTCTTAGG-GAGACAAGGCTT-GGTGGCTTAAATCTGCTTCCCA
* * ** * * ** * *
24310952 CTACTGCTTAGG-GAGATAAGA-TCTACAATCTTCAACCTTCTCTGCTGCTGCTCAGGGAGACAA
122 CTA-T-CTT-GGAAAGATAAGATTC-GCCGTCTTCAATCTGCTCCACTACTGCTTAGGGAGACAA
24311015 GGCTTGGTGTCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGC
183 GGCTTGGTG-CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGC
24311080 TCCACTACTGCTTAGGG
247 TCCACTACTGCTTA-GG
* * * * * **
24311097 AA-ATAAGATCTACAC-TCTTCAACCTTCTCCACTACTGCTTAGGGAGACAAG-GCT-TGGTGGC
1 AAGATAAGATTTAC-CGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAAT--C
** * * * * ** * **
24311158 TTAAATATGCTTC-CCACTA-TCTT-GGAAAGATAA-GATTCGCCGTCTTCGATCTGC-T-CCAC
63 TT---TAACCTTCTCCGCTACTCTTAGG-GAGACAAGGCTT-GGTGGCTTAAATCTGCTTCCCAC
* * * * * * * *
24311217 TACTGCTTAGG-GAGAT-AGA-TCTACAGTCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAG
123 TA-T-CTT-GGAAAGATAAGATTC-GCCGTCTTCAATCTGCTCCACTACTGCTTAGGGAGACAAG
24311279 GCTTGGTGTCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCT
184 GCTTGGTG-CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCT
24311344 CCACTACTGCTTAGG
248 CCACTACTGCTTAGG
* ** * * * * * *
24311359 AAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGA
1 AAGATAAGATTTACCGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGA
24311412 CTTGGTTACC
Statistics
Matches: 994, Mismatches: 81, Indels: 66
0.87 0.07 0.06
Matches are distributed among these distances:
262 22 0.02
263 188 0.19
264 752 0.76
265 13 0.01
266 10 0.01
267 9 0.01
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (262 bp):
AAGATAAGATTTACCGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTT
AACCTTCTCCGCTACTCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGG
AAAGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGGAGACAAGGCTTGGTGCTTA
AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
GG
Found at i:24310909 original size:484 final size:484
Alignment explanation
Indices: 24310243--24311231 Score: 1744
Period size: 484 Copynumber: 2.0 Consensus size: 484
24310233 CTTTAACCTT
*
24310243 CTCCGCTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATATGCTTCCCACTATCTTGGAAAGA
1 CTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATATGCTTCCCACTATCTTGGAAAGA
* * *
24310308 TAAGATTCACCGTCTTCAATCTGCTTCACTACTGCTTAGGGAGATAAGATCTATAATCTTTAACC
66 TAAGATTCACCGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACC
* * * *
24310373 TTCTCCGCTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAA
131 TTCTCCACTACTACTCAGGGAGACAAGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAA
*
24310438 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAA
196 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAA
*
24310503 CCTTCTCCGCTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGA
261 CCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGA
* * *
24310568 AAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTC
326 AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAAATAAGATCTACAATCTTC
* *
24310633 AACCTTCTCCGCTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTG
391 AACCTTCTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATATGCTTCCCACTATCTTG
*
24310698 GAAAGATAAGATTCGCCGTCTTCTATCTG
456 GAAAGATAAGATTCGCCGTCTTCGATCTG
*
24310727 CTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGA
1 CTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATATGCTTCCCACTATCTTGGAAAGA
* *
24310792 TAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACACTCTTCAACC
66 TAAGATTCACCGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACC
* *
24310857 TTCTCCACTACTACTCAGGGAGACAATGCTTGGTGGCTTGAATCTACTTCCCACTATCTTGGAAA
131 TTCTCCACTACTACTCAGGGAGACAAGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAA
*
24310922 GATAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAA
196 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAA
* * *
24310987 CCTTCTCTGCTGCTGCTCAGGGAGACAAGGCTTGGTGTCTTAAATCTGCTTCCCACTATCTTGGA
261 CCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGA
*
24311052 AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAAATAAGATCTACACTCTTC
326 AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAAATAAGATCTACAATCTTC
24311117 AACCTTCTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATATGCTTCCCACTATCTTG
391 AACCTTCTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATATGCTTCCCACTATCTTG
24311182 GAAAGATAAGATTCGCCGTCTTCGATCTG
456 GAAAGATAAGATTCGCCGTCTTCGATCTG
24311211 CTCCACTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGA
24311232 TAGATCTACA
Statistics
Matches: 479, Mismatches: 26, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
484 479 1.00
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.30
Consensus pattern (484 bp):
CTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATATGCTTCCCACTATCTTGGAAAGA
TAAGATTCACCGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACC
TTCTCCACTACTACTCAGGGAGACAAGGCTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAA
GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAA
CCTTCTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGA
AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAAATAAGATCTACAATCTTC
AACCTTCTCCACTACTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATATGCTTCCCACTATCTTG
GAAAGATAAGATTCGCCGTCTTCGATCTG
Found at i:24311379 original size:44 final size:44
Alignment explanation
Indices: 24310057--24311381 Score: 314
Period size: 44 Copynumber: 30.1 Consensus size: 44
24310047 GATTCGCCGA
* * * * *
24310057 CTTCGATCTGCTCCGCTACTGCTTAGGGAGATAAGATCTATAAT
1 CTTCAATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAGT
* * * * * * * * **
24310101 CTTTAACCTTCTCCGCTACTACTTAGGGAGACAAG-GCT-TGGT
1 CTTCAATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAGT
* * * * * *
24310143 GGCTTAAATCTGCTTCA-TACTATCTT-GGAAAGATAAGATTTGCCGT
1 --CTTCAATCTGCTCCACTACT-GCTTAGG-AAGATAAGATCTACAGT
* * * * *
24310189 CTTCGATCAGCTCCACTACTGCTTAGGGAGATAAGATCTATAAT
1 CTTCAATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAGT
* * * * * * * **
24310233 CTTTAACCTTCTCCGCTACTGCTTAGGGAGACAAG-GCT-TGGT
1 CTTCAATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAGT
* * *
24310275 GGCTTAAATATGCTTCCCACTA-T-CTT-GGAAAGATAAGAT-TCACCGT
1 --CTTCAATCTGC-T-CCACTACTGCTTAGG-AAGATAAGATCT-ACAGT
* * * *
24310321 CTTCAATCTGCTTCACTACTGCTTAGGGAGATAAGATCTATAAT
1 CTTCAATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAGT
* * * * * * * **
24310365 CTTTAACCTTCTCCGCTACTGCTTAGGGAGACAAG-GCT-TGGT
1 CTTCAATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAGT
* * *
24310407 GGCTTAAATCTGCTTCCCACTA-T-CTT-GGAAAGATAAGAT-TCGCCGT
1 --CTTCAATCTGC-T-CCACTACTGCTTAGG-AAGATAAGATCT-ACAGT
* * * *
24310453 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAAT
1 CTTCAATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAGT
* * * * * * **
24310497 CTTCAACCTTCTCCGCTACTGCTTAGGGAGACAAG-GCT-TGGT
1 CTTCAATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAGT
* * * *
24310539 GGCTTAAATCTGCTTCCCACTA-T-CTT-GGAAAGATAAGATTTGCCGT
1 --CTTCAATCTGC-T-CCACTACTGCTTAGG-AAGATAAGATCTACAGT
* * * *
24310585 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAAT
1 CTTCAATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAGT
* * * * * * **
24310629 CTTCAACCTTCTCCGCTACTGCTTAGGGAGACAAG-GCT-TGGT
1 CTTCAATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAGT
* * *
24310671 GGCTTAAATCTGCTTCCCACTA-T-CTT-GGAAAGATAAGAT-TCGCCGT
1 --CTTCAATCTGC-T-CCACTACTGCTTAGG-AAGATAAGATCT-ACAGT
* * * * **
24310717 CTTCTATCTGCTCCACTACTGCTTAGGGAGACAAG-GCT-TGGT
1 CTTCAATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAGT
* *
24310759 GGCTTAAATCTGCTTCCCACTA-T-CTT-GGAAAGATAAGAT-TCACCGT
1 --CTTCAATCTGC-T-CCACTACTGCTTAGG-AAGATAAGATCT-ACAGT
* * *
24310805 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACACT
1 CTTCAATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAGT
* * * * * * * *** *
24310849 CTTCAACCTTCTCCACTACTACTCAGGGAGACAATGCT-TGGTGG
1 CTTCAATCTGCTCCACTACTGCTTAGGAAGATAA-GATCTACAGT
* * * *
24310893 CTTGAATCTACTTCCCACTA-T-CTT-GGAAAGATAAGAT-TCGCCGT
1 CTTCAATCTGC-T-CCACTACTGCTTAGG-AAGATAAGATCT-ACAGT
** * *
24310937 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAAT
1 CTTCAATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAGT
* * ** * * * * * ***
24310981 CTTCAACCTTCTCTGCTGCTGCTCAGGGAGACAAG-GCTTGGTGT
1 CTTCAATCTGCTCCACTACTGCTTAGGAAGATAAGATC-TACAGT
* * *
24311025 CTTAAATCTGCTTCCCACTA-T-CTT-GGAAAGATAAGAT-TCGCCGT
1 CTTCAATCTGC-T-CCACTACTGCTTAGG-AAGATAAGATCT-ACAGT
* *
24311069 CTTCGATCTGCTCCACTACTGCTTAGGGAA-ATAAGATCTACACT
1 CTTCAATCTGCTCCACTACTGCTTA-GGAAGATAAGATCTACAGT
* * * * * **
24311113 CTTCAACCTTCTCCACTACTGCTTAGGGAGACAAG-GCT-TGGT
1 CTTCAATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAGT
* * * *
24311155 GGCTTAAATATGCTTCCCACTA-T-CTT-GGAAAGATAAGAT-TCGCCGT
1 --CTTCAATCTGC-T-CCACTACTGCTTAGG-AAGATAAGATCT-ACAGT
* *
24311201 CTTCGATCTGCTCCACTACTGCTTAGGGAGAT-AGATCTACAGT
1 CTTCAATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAGT
* * * * * * * * ***
24311244 CTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAG-GCTTGGTGT
1 CTTCAATCTGCTCCACTACTGCTTAGGAAGATAAGATC-TACAGT
* * *
24311288 CTTAAATCTGCTTCCCACTA-T-CTT-GGAAAGATAAGAT-TCGCCGT
1 CTTCAATCTGC-T-CCACTACTGCTTAGG-AAGATAAGATCT-ACAGT
* *
24311332 CTTCGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAAT
1 CTTCAATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAGT
24311376 CTTCAA
1 CTTCAA
24311382 CCTTCTCCGC
Statistics
Matches: 913, Mismatches: 258, Indels: 220
0.66 0.19 0.16
Matches are distributed among these distances:
42 66 0.07
43 96 0.11
44 638 0.70
45 52 0.06
46 61 0.07
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.31
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAGT
Found at i:24323169 original size:51 final size:51
Alignment explanation
Indices: 24323114--24323254 Score: 176
Period size: 51 Copynumber: 2.8 Consensus size: 51
24323104 GTTACACCAC
* * * * *
24323114 AAAGG-TAACATACTGAATACACCACAAAGGCTACCATACAAAATAAGCCAT
1 AAAGGCTATCATACAGAATACACCATAAAGGCTATCATAC-AAATAAGCCAA
* * * *
24323165 AAAGGCTATCATACAAAATACACCATAAAGTCTATCATGCAAATACGCCAA
1 AAAGGCTATCATACAGAATACACCATAAAGGCTATCATACAAATAAGCCAA
*
24323216 AAAGGTTATCATACAGAATACACCATAAAGGCTATCATA
1 AAAGGCTATCATACAGAATACACCATAAAGGCTATCATA
24323255 TAGAATGCCA
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
51 49 0.64
52 27 0.36
ACGTcount: A:0.48, C:0.22, G:0.11, T:0.19
Consensus pattern (51 bp):
AAAGGCTATCATACAGAATACACCATAAAGGCTATCATACAAATAAGCCAA
Found at i:24323259 original size:26 final size:26
Alignment explanation
Indices: 24323106--24323260 Score: 163
Period size: 26 Copynumber: 6.0 Consensus size: 26
24323096 TCAAATAGGT
* * *
24323106 TACACCACAAAGG-TAACATACTGAA
1 TACACCATAAAGGCTATCATACAGAA
* * *
24323131 TACACCACAAAGGCTACCATACAAAA
1 TACACCATAAAGGCTATCATACAGAA
*
24323157 TA-AGCCATAAAGGCTATCATACAAAA
1 TACA-CCATAAAGGCTATCATACAGAA
* *
24323183 TACACCATAAAGTCTATCATGCA-AA
1 TACACCATAAAGGCTATCATACAGAA
* * *
24323208 TACGCCAAAAAGGTTATCATACAGAA
1 TACACCATAAAGGCTATCATACAGAA
*
24323234 TACACCATAAAGGCTATCATATAGAA
1 TACACCATAAAGGCTATCATACAGAA
24323260 T
1 T
24323261 GCCACAAAAG
Statistics
Matches: 110, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
25 34 0.31
26 75 0.68
27 1 0.01
ACGTcount: A:0.47, C:0.23, G:0.11, T:0.19
Consensus pattern (26 bp):
TACACCATAAAGGCTATCATACAGAA
Found at i:24328430 original size:2 final size:2
Alignment explanation
Indices: 24328423--24328458 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
24328413 ACTTAAATAC
*
24328423 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24328459 GGTTGAGTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:24329511 original size:19 final size:20
Alignment explanation
Indices: 24329487--24329544 Score: 57
Period size: 19 Copynumber: 2.8 Consensus size: 20
24329477 TCAACTTTTG
24329487 AAAATAATTTTTAAAATTC-
1 AAAATAATTTTTAAAATTCT
*
24329506 AAAAT-ATTTATAGAAATTCT
1 AAAATAATTTTTA-AAATTCT
24329526 AAAATTTATATTTTTAAAA
1 AAAA--TA-ATTTTTAAAA
24329545 AAATTATAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
18 6 0.19
19 11 0.35
20 4 0.13
22 1 0.03
23 3 0.10
24 6 0.19
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (20 bp):
AAAATAATTTTTAAAATTCT
Found at i:24329925 original size:21 final size:21
Alignment explanation
Indices: 24329901--24329940 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
24329891 ACCTTTTCTA
*
24329901 AAGTTAAAAGTCAAAACTATC
1 AAGTTAAAAGGCAAAACTATC
24329922 AAGTTAAAAGGCAAAACTA
1 AAGTTAAAAGGCAAAACTA
24329941 CGTTATTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.55, C:0.12, G:0.12, T:0.20
Consensus pattern (21 bp):
AAGTTAAAAGGCAAAACTATC
Found at i:24330450 original size:18 final size:19
Alignment explanation
Indices: 24330405--24330450 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
24330395 TCGAACATAA
*
24330405 AATATATAAATTACAAAAT
1 AATATATAAAGTACAAAAT
*
24330424 AGA-AAATAAAGT-CAAAAT
1 A-ATATATAAAGTACAAAAT
24330442 AATATATAA
1 AATATATAA
24330451 CTTACATAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 5
0.73 0.10 0.17
Matches are distributed among these distances:
17 1 0.05
18 12 0.55
19 8 0.36
20 1 0.05
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.26
Consensus pattern (19 bp):
AATATATAAAGTACAAAAT
Found at i:24330679 original size:17 final size:18
Alignment explanation
Indices: 24330659--24330692 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
24330649 GCATAAAAAT
24330659 AAAATAAAAAT-AACAAC
1 AAAATAAAAATGAACAAC
*
24330676 AAAATGAAAATGAACAA
1 AAAATAAAAATGAACAA
24330693 TTAAAAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.74, C:0.09, G:0.06, T:0.12
Consensus pattern (18 bp):
AAAATAAAAATGAACAAC
Found at i:24332834 original size:176 final size:178
Alignment explanation
Indices: 24332131--24333713 Score: 2085
Period size: 177 Copynumber: 8.9 Consensus size: 178
24332121 TAAAGGGTGA
*
24332131 TTCATGCTATTTTAATAAATAATTTTGAAGTTATATTA-TTTAAATGGTGATTTAGCACTAGCCT
1 TTCATGCTATTTTAATAAATAATTTTGAAGTTATATTATTTTAAATGGTGATTTAGCACTAGCCG
* * * *
24332195 CATTGTTGTTAGAG-TTTACCCTCCTCTTATAATTAAAAAAAGAAAGAAGCAAAAACAAAATCAC
66 CATTGCTGTTAGAGTTTTGCCTTCCTCTTATAATTAAAAAAA-AAA-AAGCAAAAACGAAATCAC
* * *
24332259 CGCTTACCATTTTAAATGGTGATTTTGCAGATCCCATTAGTACTATTCAT
129 CGTTTACCATTTTAAATGGTGATTTAGCAGATCCCATTAGTACTGTTCAT
* * *
24332309 TTCATACTATTTTAATAAATAATTTTGAAGTTATACTATTTTAAATGGTGATTTAGCATTAGCCG
1 TTCATGCTATTTTAATAAATAATTTTGAAGTTATATTATTTTAAATGGTGATTTAGCACTAGCCG
* * * *
24332374 CATTGCTGTTAGAGTTTTGCCTTCCTCTTATAATT-AAAAAGAAAAAGAAAAAATGAAATCATCG
66 CATTGCTGTTAGAGTTTTGCCTTCCTCTTATAATTAAAAAAAAAAAAGCAAAAACGAAATCACCG
* * * *
24332438 TTTACCAATTTAAAAGGTGATTTAGCAGATCTCATTAGTACTATTCAT
131 TTTACCATTTTAAATGGTGATTTAGCAGATCCCATTAGTACTGTTCAT
* * *
24332486 TTCATGTTATTTTAATAAATAATTTTGAAGTTATATTATTTTAAAT-GTGATTTAGCACTAGACA
1 TTCATGCTATTTTAATAAATAATTTTGAAGTTATATTATTTTAAATGGTGATTTAGCACTAGCCG
* * * * * *
24332550 CATTGCTGTTAGAATTTTTCCATCCTCTTATAAATAAAAAAACAAAAGC----A--AAATCATCG
66 CATTGCTGTTAGAGTTTTGCCTTCCTCTTATAATTAAAAAAAAAAAAGCAAAAACGAAATCACCG
* *
24332609 TTTACCATTTTAAATGGTGATTTAGCAGATCTCATTAGTACTATTCAT
131 TTTACCATTTTAAATGGTGATTTAGCAGATCCCATTAGTACTGTTCAT
* *
24332657 TTCATGCTACTTTAATAAATAATTTTGAAGTTATATTATTTTAAATGGTGATTTAGCACTAGGCG
1 TTCATGCTATTTTAATAAATAATTTTGAAGTTATATTATTTTAAATGGTGATTTAGCACTAGCCG
* * * **
24332722 CATTGCTATTAGAGTTTTGCCTTCCTCTTATAATT-AAAAACAAAAA-CAAAAACAAAATCATTG
66 CATTGCTGTTAGAGTTTTGCCTTCCTCTTATAATTAAAAAAAAAAAAGCAAAAACGAAATCACCG
* * * *
24332785 TTTAACATTTTAAAGGGTGATTTAGTAGACCCCATTAGTACTGTTCAT
131 TTTACCATTTTAAATGGTGATTTAGCAGATCCCATTAGTACTGTTCAT
* * * *
24332833 TTCACGCTATTTTAATAAATAATTTTGAAGTTATACTATTTTAAATTGTGATTTAGCACTAGCCC
1 TTCATGCTATTTTAATAAATAATTTTGAAGTTATATTATTTTAAATGGTGATTTAGCACTAGCCG
*
24332898 CATTGCTGTAAGAGTTTTGCCTTCCTCTTATAATTCAAAAAAAAAAAAAGAAGCAAAAACGAAAT
66 CATTGCTGTTAGAGTTTTGCCTTCCTCTTATAATT----AAAAAAAAAA-AAGCAAAAACGAAAT
* *
24332963 CACCGTTTACCATTTTAAAAGGTGATTTAGTAGATCCCATTAGTACTGTTCAT
126 CACCGTTTACCATTTTAAATGGTGATTTAGCAGATCCCATTAGTACTGTTCAT
* * * *
24333016 TTCATGGTATTTTAATAAATAATTTTGAATTTATATTTATTTTAAATGGTGATTTAGCACTGGAC
1 TTCATGCTATTTTAATAAATAATTTTGAAGTTATA-TTATTTTAAATGGTGATTTAGCACTAGCC
** * * * *
24333081 AAATTGTTGTTAAAGTTTTGCCCTCCTCTTATAATTCAAAAAAAAAAAAGCAAAAAGTGAAATCA
65 GCATTGCTGTTAGAGTTTTGCCTTCCTCTTATAATT-AAAAAAAAAAAAGCAAAAA-CGAAATCA
* * * **
24333146 CCGTTTACCATTTTAAATGATGATTTATCAGATCCCGTTAGTTTTGTTCAT
128 CCGTTTACCATTTTAAATGGTGATTTAGCAGATCCCATTAGTACTGTTCAT
* * *
24333197 TTCATGCTACTTTAATAAATAATTTTGAAGTTATACTATTTTTAATGGTGATTTAGCACTAGCCG
1 TTCATGCTATTTTAATAAATAATTTTGAAGTTATATTATTTTAAATGGTGATTTAGCACTAGCCG
* * * *
24333262 TATTGTTGTTAGAGTTTTGCCTTCCTCTTATAATT-AAAAAAAAAAAGAAAAAACGAAATCACCA
66 CATTGCTGTTAGAGTTTTGCCTTCCTCTTATAATTAAAAAAAAAAAAGCAAAAACGAAATCACCG
* *
24333326 TTTACCATTTTAAATGGTGATTTAGCAGAACCCATTAGTACGGTTCAT
131 TTTACCATTTTAAATGGTGATTTAGCAGATCCCATTAGTACTGTTCAT
* * * * *
24333374 CTCATGCTATTTTAATAAATAATTTTGAAGTTACACTATTTTAAATGGTGATTTAGCACTAACTG
1 TTCATGCTATTTTAATAAATAATTTTGAAGTTATATTATTTTAAATGGTGATTTAGCACTAGCCG
** * *
24333439 CATTATTGTTAGAGTTTTGCATTCCTCTTATAATTCAAACAAACAAAAAAAAAAAACAAAAACGA
66 CATTGCTGTTAGAGTTTTGCCTTCCTCTTATAATT-------A-AAAAAAAAAAAGCAAAAACGA
* * * *
24333504 AATCACCTTTTACCATTTTAAATGGTGATTTAGCATATCCCATTGGTACAGTTCAT
123 AATCACCGTTTACCATTTTAAATGGTGATTTAGCAGATCCCATTAGTACTGTTCAT
* *
24333560 TTCATGCTATTTTAATAAATAATTTTGAAGTTATATTATTTCAAATGGTGATTTAGCACTAGTCG
1 TTCATGCTATTTTAATAAATAATTTTGAAGTTATATTATTTTAAATGGTGATTTAGCACTAGCCG
* *
24333625 CATTGCTGTTAGAGTTTTGCCCTCCTCTTATAATTCAAAAAAAGAAGAAGCAAAAACGAAATCAC
66 CATTGCTGTTAGAGTTTTGCCTTCCTCTTATAATT-AAAAAAA-AAAAAGCAAAAACGAAATCAC
*
24333690 TGTTTACCATTTTAAATGGTGATT
129 CGTTTACCATTTTAAATGGTGATT
24333714 AGACACATTA
Statistics
Matches: 1236, Mismatches: 140, Indels: 56
0.86 0.10 0.04
Matches are distributed among these distances:
170 1 0.00
171 108 0.09
172 46 0.04
173 1 0.00
174 1 0.00
176 188 0.15
177 253 0.20
178 56 0.05
179 48 0.04
180 126 0.10
181 101 0.08
182 2 0.00
183 91 0.07
184 55 0.04
186 159 0.13
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.38
Consensus pattern (178 bp):
TTCATGCTATTTTAATAAATAATTTTGAAGTTATATTATTTTAAATGGTGATTTAGCACTAGCCG
CATTGCTGTTAGAGTTTTGCCTTCCTCTTATAATTAAAAAAAAAAAAGCAAAAACGAAATCACCG
TTTACCATTTTAAATGGTGATTTAGCAGATCCCATTAGTACTGTTCAT
Found at i:24333801 original size:95 final size:94
Alignment explanation
Indices: 24333631--24333808 Score: 293
Period size: 95 Copynumber: 1.9 Consensus size: 94
24333621 GTCGCATTGC
* * *
24333631 TGTTAGAGTTTTGCCCTCCTCTTATAATTCAAAAAAAGAAGAAGCAAAAACGAAATCACTGTTTA
1 TGTTAGAGTTTTGCCCTCCTCTTATAATTCAAAAAAAAAAAAAGCAAAAACGAAATCACCGTTTA
24333696 CCATTTTAAATGGTGATTAGACACATTAT
66 CCATTTTAAATGGTGATTAGACACATTAT
* *
24333725 TGTTAGAGTTTTGCCCTCCTTTTATAATTCAAACAAAAAAAAAAGCAAAAGCGAAATCACCGTTT
1 TGTTAGAGTTTTGCCCTCCTCTTATAATTCAAA-AAAAAAAAAAGCAAAAACGAAATCACCGTTT
*
24333790 ACTATTTTAAATGGTGATT
65 ACCATTTTAAATGGTGATT
24333809 TAGCATATCC
Statistics
Matches: 77, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
94 32 0.42
95 45 0.58
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (94 bp):
TGTTAGAGTTTTGCCCTCCTCTTATAATTCAAAAAAAAAAAAAGCAAAAACGAAATCACCGTTTA
CCATTTTAAATGGTGATTAGACACATTAT
Found at i:24333894 original size:24 final size:25
Alignment explanation
Indices: 24333842--24333905 Score: 76
Period size: 24 Copynumber: 2.4 Consensus size: 25
24333832 CATTTCATGG
24333842 TATTTTAATAAATAATTTTGAAGTTATAT
1 TATTTTAAT-AATAATTTT--A-TTATAT
24333871 TATTTTAATAATAATTTT-TTATAT
1 TATTTTAATAATAATTTTATTATAT
*
24333895 TATTTAAATAA
1 TATTTTAATAA
24333906 AAAATAAAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
24 16 0.47
28 9 0.26
29 9 0.26
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (25 bp):
TATTTTAATAATAATTTTATTATAT
Found at i:24339755 original size:30 final size:30
Alignment explanation
Indices: 24339720--24339865 Score: 204
Period size: 30 Copynumber: 4.9 Consensus size: 30
24339710 AGAATCAGTC
* * *
24339720 TGGGCCTGAGCCCTATACAGTAGCA-ATGTG
1 TGGGCCTTAGCCCAATACAGTAACAGA-GTG
* * * *
24339750 GGGGCCATAACCCAATACAGTAACAGAGTT
1 TGGGCCTTAGCCCAATACAGTAACAGAGTG
*
24339780 TGGGCCTTAGCACAATACAGTAACAGAGTG
1 TGGGCCTTAGCCCAATACAGTAACAGAGTG
24339810 TGGGCCTTAGCCCAATACAGTAACAGAGTG
1 TGGGCCTTAGCCCAATACAGTAACAGAGTG
24339840 TGGGCCTTAGCCCAATACAGTAACAG
1 TGGGCCTTAGCCCAATACAGTAACAG
24339866 TGCAAATGCA
Statistics
Matches: 102, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
30 101 0.99
31 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.26, T:0.20
Consensus pattern (30 bp):
TGGGCCTTAGCCCAATACAGTAACAGAGTG
Found at i:24340005 original size:26 final size:26
Alignment explanation
Indices: 24339975--24340075 Score: 123
Period size: 26 Copynumber: 3.9 Consensus size: 26
24339965 ACTAATATTG
24339975 CAGCAAAGCTGCCAGTAATAGTAACA
1 CAGCAAAGCTGCCAGTAATAGTAACA
* * * **
24340001 CAGCAAAGCTGCCAATAACATTAATG
1 CAGCAAAGCTGCCAGTAATAGTAACA
*
24340027 CAGCAAAGCTACCAGT-ATCAGTAACA
1 CAGCAAAGCTGCCAGTAAT-AGTAACA
*
24340053 CAGCAAAGCTGCTAGTAATAGTA
1 CAGCAAAGCTGCCAGTAATAGTA
24340076 CTTGTGGGAA
Statistics
Matches: 60, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
25 1 0.02
26 57 0.95
27 2 0.03
ACGTcount: A:0.42, C:0.23, G:0.18, T:0.18
Consensus pattern (26 bp):
CAGCAAAGCTGCCAGTAATAGTAACA
Found at i:24340679 original size:27 final size:27
Alignment explanation
Indices: 24340271--24340683 Score: 453
Period size: 27 Copynumber: 15.3 Consensus size: 27
24340261 TATAACGGTC
*
24340271 ATTTTACCCTATAG-GGGTATTTC-GATA
1 ATTTTACCC-ATCGAGGGTATTTCAG-TA
*
24340298 ATTTTACTCATCGAGGGTATTTC-GATA
1 ATTTTACCCATCGAGGGTATTTCAG-TA
**
24340325 ATTTTACCCATC-AGGGGTATTTTGGTA
1 ATTTTACCCATCGA-GGGTATTTCAGTA
* **
24340352 ATTTTACCCATCGAGGATATTTTGGTA
1 ATTTTACCCATCGAGGGTATTTCAGTA
*
24340379 ATTTTACCCATCGAGGGTATTTCGGTA
1 ATTTTACCCATCGAGGGTATTTCAGTA
24340406 ATTTTACCCATCGAGGGTATTTC-GATA
1 ATTTTACCCATCGAGGGTATTTCAG-TA
* * **
24340433 ATTTTACCCATCAAGAGTATTTCAGCC
1 ATTTTACCCATCGAGGGTATTTCAGTA
* *
24340460 ATTTTACCCATCGAGGATATTTCAGTC
1 ATTTTACCCATCGAGGGTATTTCAGTA
24340487 ATTTTACCCATCGAGGGTATTTCAGTA
1 ATTTTACCCATCGAGGGTATTTCAGTA
* *
24340514 ATTTTACCCATCGATGGTATTTCGGTA
1 ATTTTACCCATCGAGGGTATTTCAGTA
* *
24340541 ATTTTATCCATC-AGGGGTATTT-TGATA
1 ATTTTACCCATCGA-GGGTATTTCAG-TA
*
24340568 ATTTTACCTATCGAGGGTATTTCAGTA
1 ATTTTACCCATCGAGGGTATTTCAGTA
* * * *
24340595 ATTTTACCCATTGAGGGTAATTCAATC
1 ATTTTACCCATCGAGGGTATTTCAGTA
* *
24340622 ATTTTACCCATCTAGGGTATTTCGGTA
1 ATTTTACCCATCGAGGGTATTTCAGTA
* * * *
24340649 ATTTTACCCTTCGAGGGAAATTCAGTC
1 ATTTTACCCATCGAGGGTATTTCAGTA
24340676 ATTTTACC
1 ATTTTACC
24340684 TTTCGGGGGT
Statistics
Matches: 334, Mismatches: 42, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
26 7 0.02
27 322 0.96
28 5 0.01
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (27 bp):
ATTTTACCCATCGAGGGTATTTCAGTA
Found at i:24350536 original size:16 final size:17
Alignment explanation
Indices: 24350499--24350541 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
24350489 AAATTTAAAC
24350499 ATTTT-ATTAAAATAAT
1 ATTTTAATTAAAATAAT
*
24350515 AGTTTAATTAAAATAAT
1 ATTTTAATTAAAATAAT
*
24350532 -TTTTATTTAA
1 ATTTTAATTAA
24350542 TAAATTATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 12 0.52
17 11 0.48
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (17 bp):
ATTTTAATTAAAATAAT
Found at i:24354728 original size:16 final size:16
Alignment explanation
Indices: 24354707--24354737 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24354697 CATCAATGTC
*
24354707 ACAAAAAAACAAAACT
1 ACAAAAAAAAAAAACT
24354723 ACAAAAAAAAAAAAC
1 ACAAAAAAAAAAAAC
24354738 CAAATTACAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.16, G:0.00, T:0.03
Consensus pattern (16 bp):
ACAAAAAAAAAAAACT
Found at i:24356116 original size:11 final size:11
Alignment explanation
Indices: 24356100--24356124 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
24356090 ATTTTTTAAC
24356100 TTTAAAATACT
1 TTTAAAATACT
24356111 TTTAAAATACT
1 TTTAAAATACT
24356122 TTT
1 TTT
24356125 TTTAATTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (11 bp):
TTTAAAATACT
Found at i:24356144 original size:40 final size:41
Alignment explanation
Indices: 24356084--24356194 Score: 138
Period size: 40 Copynumber: 2.7 Consensus size: 41
24356074 AATTTTTTTA
*
24356084 TTTTTT-A-TTTTTTAACTTTAAAATACTTTTAAAATAC-T
1 TTTTTTAATTTTTTTAATTTTAAAATACTTTTAAAATACTT
*
24356122 TTTTTTAATTTTTTTAATTTTAAAATATTTTTAAAATACTTT
1 TTTTTTAATTTTTTTAATTTTAAAATACTTTTAAAATAC-TT
24356164 TTTTTTAATTTTTATTTTAATTTTTAAAATA
1 TTTTTTAA--TTT-TTTTAA-TTTTAAAATA
24356195 AATTTTTGGT
Statistics
Matches: 63, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
38 6 0.10
39 1 0.02
40 28 0.44
42 9 0.14
44 3 0.05
45 6 0.10
46 10 0.16
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (41 bp):
TTTTTTAATTTTTTTAATTTTAAAATACTTTTAAAATACTT
Found at i:24356176 original size:12 final size:12
Alignment explanation
Indices: 24356161--24356189 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
24356151 TTTAAAATAC
24356161 TTTTT-TTTTAA
1 TTTTTATTTTAA
24356172 TTTTTATTTTAA
1 TTTTTATTTTAA
24356184 TTTTTA
1 TTTTTA
24356190 AAATAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTTATTTTAA
Found at i:24356546 original size:13 final size:14
Alignment explanation
Indices: 24356522--24356550 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
24356512 ATCACTACAT
24356522 AAATCAAAATTTAA
1 AAATCAAAATTTAA
24356536 AAATC-AAATTTAA
1 AAATCAAAATTTAA
24356549 AA
1 AA
24356551 TAAAGATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.28
Consensus pattern (14 bp):
AAATCAAAATTTAA
Found at i:24356559 original size:18 final size:18
Alignment explanation
Indices: 24356533--24356567 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
24356523 AATCAAAATT
24356533 TAAAAATCAAATTTAAAA
1 TAAAAATCAAATTTAAAA
*
24356551 TAAAGATCAAATTTAAA
1 TAAAAATCAAATTTAAA
24356568 CTAATTACAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.63, C:0.06, G:0.03, T:0.29
Consensus pattern (18 bp):
TAAAAATCAAATTTAAAA
Found at i:24356658 original size:28 final size:29
Alignment explanation
Indices: 24356605--24356663 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 29
24356595 AAATAATTTG
* *
24356605 ATCTTTATCCAACCAATTTCCAATCTTCA
1 ATCTTTATCCAACCAACTTCAAATCTTCA
*
24356634 ATCTTTAT-CAGCCAACTTCAAATCTTCA
1 ATCTTTATCCAACCAACTTCAAATCTTCA
24356662 AT
1 AT
24356664 ATATCAATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 19 0.70
29 8 0.30
ACGTcount: A:0.32, C:0.29, G:0.02, T:0.37
Consensus pattern (29 bp):
ATCTTTATCCAACCAACTTCAAATCTTCA
Found at i:24357092 original size:3 final size:3
Alignment explanation
Indices: 24357084--24357117 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
24357074 GTACTCAATA
24357084 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
24357118 CCTTTCTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:24359236 original size:17 final size:17
Alignment explanation
Indices: 24359214--24359246 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
24359204 TGGTTTATTT
24359214 TCTTTTTTTTTCCTTTC
1 TCTTTTTTTTTCCTTTC
*
24359231 TCTTTTTTTTTTCTTT
1 TCTTTTTTTTTCCTTT
24359247 TAGTTTTCTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (17 bp):
TCTTTTTTTTTCCTTTC
Found at i:24366243 original size:14 final size:15
Alignment explanation
Indices: 24366218--24366261 Score: 54
Period size: 14 Copynumber: 2.8 Consensus size: 15
24366208 ATCACTAGAT
24366218 AAATCAAAATTTAAA
1 AAATCAAAATTTAAA
24366233 AAATC-AAATTTAAA
1 AAATCAAAATTTAAA
24366247 ATAATTACAAAATTT
1 A-AA-T-CAAAATTT
24366262 TAACAATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 10 0.40
15 7 0.28
16 1 0.04
17 1 0.04
18 6 0.24
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (15 bp):
AAATCAAAATTTAAA
Found at i:24366321 original size:29 final size:29
Alignment explanation
Indices: 24366288--24366344 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
24366278 AATTTGATCT
* *
24366288 TTATCCAACCAATTTTAAATATTCAATCA
1 TTATCCAACCAACTTCAAATATTCAATCA
*
24366317 TTATCCAACCAACTTCAAATCTTCAATC
1 TTATCCAACCAACTTCAAATATTCAATC
24366345 TTTCAACCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.39, C:0.26, G:0.00, T:0.35
Consensus pattern (29 bp):
TTATCCAACCAACTTCAAATATTCAATCA
Found at i:24366603 original size:18 final size:19
Alignment explanation
Indices: 24366570--24366606 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
24366560 TGATAGATGA
*
24366570 TAGATTATGTTTTATTTTT
1 TAGATAATGTTTTATTTTT
24366589 TAGATAATG-TTTATTTTT
1 TAGATAATGTTTTATTTTT
24366607 ATTGACTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.24, C:0.00, G:0.11, T:0.65
Consensus pattern (19 bp):
TAGATAATGTTTTATTTTT
Found at i:24375245 original size:11 final size:13
Alignment explanation
Indices: 24375219--24375252 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
24375209 AAAACCCAAT
24375219 TATAAAATATATA
1 TATAAAATATATA
*
24375232 TATAAAATAAATA
1 TATAAAATATATA
24375245 TAATAAAA
1 T-ATAAAA
24375253 GTCCAATACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
TATAAAATATATA
Found at i:24377921 original size:14 final size:14
Alignment explanation
Indices: 24377904--24377938 Score: 61
Period size: 14 Copynumber: 2.4 Consensus size: 14
24377894 CTCACATTTC
24377904 TTTTCTTTTCTCCA
1 TTTTCTTTTCTCCA
24377918 TTTTCTTTTCTCCA
1 TTTTCTTTTCTCCA
24377932 TATTTCT
1 T-TTTCT
24377939 GCTTCTTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 15 0.75
15 5 0.25
ACGTcount: A:0.09, C:0.26, G:0.00, T:0.66
Consensus pattern (14 bp):
TTTTCTTTTCTCCA
Found at i:24377922 original size:19 final size:18
Alignment explanation
Indices: 24377884--24377928 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
24377874 TACGGTACGC
24377884 TTCTTTTC-TTCTCACAT
1 TTCTTTTCTTTCTCACAT
24377901 TTCTTTTCTTTTCTC-CATT
1 TTCTTTTC-TTTCTCACA-T
24377920 TTCTTTTCT
1 TTCTTTTCT
24377929 CCATATTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 8 0.32
18 3 0.12
19 14 0.56
ACGTcount: A:0.07, C:0.27, G:0.00, T:0.67
Consensus pattern (18 bp):
TTCTTTTCTTTCTCACAT
Found at i:24381012 original size:35 final size:37
Alignment explanation
Indices: 24380973--24381049 Score: 90
Period size: 35 Copynumber: 2.2 Consensus size: 37
24380963 TTATTAAATT
24380973 ATATTTAATAATA-ATTATGTTAA-AATATGATTAAA
1 ATATTTAATAATATATTATGTTAATAATATGATTAAA
* * * *
24381008 ATATTT-ATATTATATTATTTTAATAATCTTATTAAA
1 ATATTTAATAATATATTATGTTAATAATATGATTAAA
24381044 AT-TTTA
1 ATATTTA
24381050 TAACAAAACA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
34 5 0.14
35 18 0.51
36 12 0.34
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (37 bp):
ATATTTAATAATATATTATGTTAATAATATGATTAAA
Found at i:24381232 original size:16 final size:16
Alignment explanation
Indices: 24381211--24381247 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
24381201 TTGAATTGTT
24381211 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
24381227 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
24381243 ATTAC
1 ATTAC
24381248 AGCAAACCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.22, C:0.35, G:0.05, T:0.38
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:24392760 original size:46 final size:45
Alignment explanation
Indices: 24392693--24392935 Score: 155
Period size: 46 Copynumber: 5.5 Consensus size: 45
24392683 TCGCATCAGG
24392693 TCTTATCTCCCTGAGATTACAGTGGAATAGAACGAAGAATTACAGA
1 TCTTATCTCCCTGAGATTACAGTGGAA-AGAACGAAGAATTACAGA
* * ** * *
24392739 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGT--A-A
1 TCTTATCTCCCTGAGATTACAGTGGA-AAGAACGAAG-AATTACAGA
* * * * ** * *
24392783 TCCTATTTCCCTGAGATTACAGTGGAACGGATTAA-AATAAAAGA
1 TCTTATCTCCCTGAGATTACAGTGGAAAGAACGAAGAATTACAGA
** * * * *
24392827 TCTTATCTCTTTGA-AGTTACAGT--AAAGTA-GATCGCA-T-CAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGAAAGAACGA-AGAATTACAGA
* *
24392868 TCTTATCTCCCTGAGATTACAATGGAATAGACCGAAGAATTACAGA
1 TCTTATCTCCCTGAGATTACAGTGGAA-AGAACGAAGAATTACAGA
*
24392914 TCTTATCTCCCTAAGATTACAG
1 TCTTATCTCCCTGAGATTACAG
24392936 CGGAGCAGAT
Statistics
Matches: 143, Mismatches: 39, Indels: 30
0.67 0.18 0.14
Matches are distributed among these distances:
41 22 0.15
42 5 0.03
43 9 0.06
44 46 0.32
45 4 0.03
46 55 0.38
47 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (45 bp):
TCTTATCTCCCTGAGATTACAGTGGAAAGAACGAAGAATTACAGA
Found at i:24392760 original size:87 final size:88
Alignment explanation
Indices: 24392650--24392935 Score: 296
Period size: 87 Copynumber: 3.3 Consensus size: 88
24392640 TAAAATAAAT
* *
24392650 GATCTTATCTCTCT-AAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACA
1 GATCTTATCTCCCTGAGAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACA
24392714 GTGGAATAGAACGAAGAATTACA
66 GTGGAATAGAACGAAGAATTACA
** * * * * * * *
24392737 GATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATT
1 GATCTTATCTCCCTGAGAGTTACAGTAGAGTAGATCGCA-TCAG--GTCTTATCTCCCTGAGATT
* * ** * *
24392801 ACAGTGGAA-CGGATTAA-AATAAAA
63 ACAGTGGAATAGAACGAAGAATTACA
** *
24392825 GATCTTATCTCTTTGA-AGTTACAGTAAAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACA
1 GATCTTATCTCCCTGAGAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACA
* *
24392889 ATGGAATAGACCGAAGAATTACA
66 GTGGAATAGAACGAAGAATTACA
*
24392912 GATCTTATCTCCCTAAGA-TTACAG
1 GATCTTATCTCCCTGAGAGTTACAG
24392936 CGGAGCAGAT
Statistics
Matches: 151, Mismatches: 40, Indels: 16
0.73 0.19 0.08
Matches are distributed among these distances:
85 24 0.16
86 3 0.02
87 56 0.37
88 39 0.26
89 4 0.03
90 25 0.17
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (88 bp):
GATCTTATCTCCCTGAGAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACA
GTGGAATAGAACGAAGAATTACA
Found at i:24392858 original size:175 final size:174
Alignment explanation
Indices: 24392562--24393259 Score: 892
Period size: 175 Copynumber: 4.1 Consensus size: 174
24392552 GAAGATGGCG
* *
24392562 GATCTTATCTCCCTAAGATTACAGTGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATCA
1 GATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* * * * *
24392627 TAGTGGAACAGATTAAAATAAATGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAG
66 CAGTGGAACGGATTAAAATAAAGGATCTTATCTCT-TGAAGTTACAGTAAAGTAGATCGCATCAG
*
24392692 GTCTTATCTCCCTGAGATTACAGTGGAATAGAACGAAGAATTACA
130 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTACA
*
24392737 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
1 GATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
*
24392802 CAGTGGAACGGATTAAAATAAAAGATCTTATCTCTTTGAAGTTACAGTAAAGTAGATCGCATCAG
66 CAGTGGAACGGATTAAAATAAAGGATCTTATCTC-TTGAAGTTACAGTAAAGTAGATCGCATCAG
*
24392867 GTCTTATCTCCCTGAGATTACAATGGAATAGACCGAAGAATTACA
130 GTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTACA
24392912 GATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
1 GATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* * * * *
24392977 CAGTGGAACGGATTAAAATAAAGGATCTTAT-TACAGTG--G-AACGGATTAA--A-AT---A-A
66 CAGTGGAACGGATTAAAATAAAGGATCTTATCT-C-TTGAAGTTACAG-TAAAGTAGATCGCATC
* * * * * * *
24393031 AGGATATTATCTCTCT-AAAGTTACAGTTGAGTAGATC---GCA-T-CA
128 AGG-TCTTATCTCCCTGAGA-TTACAGTGGAATAGACCGAAGAATTACA
* * * * *
24393074 GGTCTTATCTCCTTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTA
1 GATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
* * * *
24393139 CAGTGGAGCGGATTAAAATAAAGGATCTTATCTC-TGAAGTTACAGTATAGCAGATCGTATCAGG
66 CAGTGGAACGGATTAAAATAAAGGATCTTATCTCTTGAAGTTACAGTAAAGTAGATCGCATCAGG
**
24393203 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTTA
131 TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTACA
*
24393247 GACCTTATCTCCC
1 GATCTTATCTCCC
24393260 AGATAATGTA
Statistics
Matches: 453, Mismatches: 48, Indels: 46
0.83 0.09 0.08
Matches are distributed among these distances:
160 2 0.00
162 96 0.21
163 5 0.01
164 3 0.01
165 2 0.00
166 5 0.01
167 24 0.05
168 25 0.06
169 5 0.01
170 2 0.00
171 3 0.01
172 4 0.01
173 15 0.03
174 1 0.00
175 260 0.57
176 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (174 bp):
GATCTTATCTCCCTAAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATTTCCCTGAGATTA
CAGTGGAACGGATTAAAATAAAGGATCTTATCTCTTGAAGTTACAGTAAAGTAGATCGCATCAGG
TCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTACA
Found at i:24392894 original size:85 final size:85
Alignment explanation
Indices: 24392615--24393007 Score: 295
Period size: 87 Copynumber: 4.5 Consensus size: 85
24392605 TAATCCTATT
* * * * *
24392615 TCCCTGAGATCATAGTGGAACAGATTAAAATAAATGATCTTATCTCTCTAAAGTTACAGTAGAGT
1 TCCCTGAGATTACAGTGGAACGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGT
24392680 AGATCGCATCAGGTCTTATC
66 AGATCGCATCAGGTCTTATC
* * ** * * * **
24392700 TCCCTGAGATTACAGTGGAATAGAACGAAGAATTACAGATCTTATCTCCCTG-AGATTACAGCGG
1 TCCCTGAGATTACAGTGGAA-CGGATTAA-AATAAAAGATCTTATCTCTCTGAAG-TTACAGTAG
* * * * * * *
24392764 AGCAGATTGAAGCCAGTAATCCTATT
63 AGTAGATCGCA-TCAG--GTCTTATC
* *
24392790 TCCCTGAGATTACAGTGGAACGGATTAAAATAAAAGATCTTATCTCTTTGAAGTTACAGTAAAGT
1 TCCCTGAGATTACAGTGGAACGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGT
24392855 AGATCGCATCAGGTCTTATC
66 AGATCGCATCAGGTCTTATC
* ** ** * * * **
24392875 TCCCTGAGATTACAATGGAATAGACCGAAGAATTACAGATCTTATCTCCCT-AAGATTACAGCGG
1 TCCCTGAGATTACAGTGGAACGGA-TTAA-AATAAAAGATCTTATCTCTCTGAAG-TTACAGTAG
* * * * * * *
24392939 AGCAGATTGAAGCCAGTAATCCTATT
63 AGTAGATCGCA-TCAG--GTCTTATC
*
24392965 TCCCTGAGATTACAGTGGAACGGATTAAAATAAAGGATCTTAT
1 TCCCTGAGATTACAGTGGAACGGATTAAAATAAAAGATCTTAT
24393008 TACAGTGGAA
Statistics
Matches: 229, Mismatches: 66, Indels: 23
0.72 0.21 0.07
Matches are distributed among these distances:
85 44 0.19
86 10 0.04
87 66 0.29
88 50 0.22
89 8 0.03
90 51 0.22
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.28
Consensus pattern (85 bp):
TCCCTGAGATTACAGTGGAACGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGT
AGATCGCATCAGGTCTTATC
Found at i:24393015 original size:33 final size:33
Alignment explanation
Indices: 24392973--24393040 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
24392963 TTTCCCTGAG
*
24392973 ATTACAGTGGAACGGATTAAAATAAAGGATCTT
1 ATTACAGTGGAACGGATTAAAATAAAGGATATT
24393006 ATTACAGTGGAACGGATTAAAATAAAGGATATT
1 ATTACAGTGGAACGGATTAAAATAAAGGATATT
24393039 AT
1 AT
24393041 CTCTCTAAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.44, C:0.07, G:0.21, T:0.28
Consensus pattern (33 bp):
ATTACAGTGGAACGGATTAAAATAAAGGATATT
Found at i:24393171 original size:44 final size:43
Alignment explanation
Indices: 24393006--24393228 Score: 113
Period size: 44 Copynumber: 5.3 Consensus size: 43
24392996 AAAGGATCTT
* * * * *
24393006 ATTACAGTGGAACGGATTAAAATAAAGGATATTATCTCTCT-AA
1 ATTACAGTGGAGCAGATTAAAAT-AAGGATCTTATCTCCCTGAG
* * *** * *
24393049 AGTTACAGTTGAGTAGA-TCGCATCAGG-TCTTATCTCCTTGAG
1 A-TTACAGTGGAGCAGATTAAAATAAGGATCTTATCTCCCTGAG
* ** * *
24393091 ATTACAGCGGAGCAGATTGAAGCT-AGTAATCCTATCTCCCTGAG
1 ATTACAGTGGAGCAGATT-AAAATAAG-GATCTTATCTCCCTGAG
*
24393135 ATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCT--CTGA-
1 ATTACAGTGGAGCAGATTAAAAT-AAGGATCTTATCTCCCTGAG
** *** *
24393176 AGTTACAGTATAGCAGA-TCGTATCAGG-TCTTATCTCCCTGAG
1 A-TTACAGTGGAGCAGATTAAAATAAGGATCTTATCTCCCTGAG
24393218 ATTACAGTGGA
1 ATTACAGTGGA
24393229 ATAGACCGAA
Statistics
Matches: 131, Mismatches: 37, Indels: 26
0.68 0.19 0.13
Matches are distributed among these distances:
39 8 0.06
40 3 0.02
41 37 0.28
42 25 0.19
43 8 0.06
44 48 0.37
45 2 0.02
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.30
Consensus pattern (43 bp):
ATTACAGTGGAGCAGATTAAAATAAGGATCTTATCTCCCTGAG
Found at i:24393273 original size:129 final size:128
Alignment explanation
Indices: 24393008--24393240 Score: 308
Period size: 127 Copynumber: 1.8 Consensus size: 128
24392998 AGGATCTTAT
* *
24393008 TACAGTGGAACGGATTAAAATAAAGGATATTATCTCTCTAAAGTTACAGTTGAGTAGATCGCATC
1 TACAGTGGAGCGGATTAAAATAAAGGATATTA-CTCTCTAAAGTTACAGTTGAGCAGATCGCATC
* * ** * * *
24393073 AGGTCTTATCTCCTTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGAT
65 AGGTCTTATCTCCCTGAGATTACAGCGGAACAGACCGAAGATAGTAATCCTATCTCCCAGAGAA
* * *
24393137 TACAGTGGAGCGGATTAAAATAAAGGATCTTA-TCTCTGAAGTTACAGTAT-AGCAGATCGTATC
1 TACAGTGGAGCGGATTAAAATAAAGGATATTACTCTCTAAAGTTACAGT-TGAGCAGATCGCATC
* *
24393200 AGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGA
65 AGGTCTTATCTCCCTGAGATTACAGCGGAACAGACCGAAGA
24393241 ATTTTAGACC
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
127 60 0.66
128 1 0.01
129 30 0.33
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (128 bp):
TACAGTGGAGCGGATTAAAATAAAGGATATTACTCTCTAAAGTTACAGTTGAGCAGATCGCATCA
GGTCTTATCTCCCTGAGATTACAGCGGAACAGACCGAAGATAGTAATCCTATCTCCCAGAGAA
Found at i:24393284 original size:129 final size:128
Alignment explanation
Indices: 24393008--24393284 Score: 290
Period size: 127 Copynumber: 2.1 Consensus size: 128
24392998 AGGATCTTAT
* * *
24393008 TACAGTGGAACGGATTAAAATAAAGGATATTATCTCTCTAAAGTTACAGTTGAGTAGATCGCATC
1 TACAGTGGAGCAGATTAAAATAAAGGATATTA-CTCTCTAAAGTTACAGTTGAGCAGATCGCATC
* * ** * * *
24393073 AGGTCTTATCTCCTTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGAT
65 AGGTCTTATCTCCCTGAGATTACAGCGGAACAGACCGAAGATAGTAATCCTATCTCCCAGAGAA
* * * *
24393137 TACAGTGGAGCGGATTAAAATAAAGGATCTTA-TCTCTGAAGTTACAGTAT-AGCAGATCGTATC
1 TACAGTGGAGCAGATTAAAATAAAGGATATTACTCTCTAAAGTTACAGT-TGAGCAGATCGCATC
* * ** *
24393200 AGGTCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAGAATTTTAGA-CCTTATCTCCCAGAT
65 AGGTCTTATCTCCCTGAGATTACAGCGGAACAGACCGAAG-ATAGTA-ATCC-TATCTCCCAGAG
24393264 AA
127 AA
** *
24393266 TGTAGTGGAGTAGATTAAA
1 TACAGTGGAGCAGATTAAA
24393285 GCCACAACGG
Statistics
Matches: 123, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
127 60 0.49
128 6 0.05
129 57 0.46
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (128 bp):
TACAGTGGAGCAGATTAAAATAAAGGATATTACTCTCTAAAGTTACAGTTGAGCAGATCGCATCA
GGTCTTATCTCCCTGAGATTACAGCGGAACAGACCGAAGATAGTAATCCTATCTCCCAGAGAA
Found at i:24393689 original size:11 final size:11
Alignment explanation
Indices: 24393671--24393700 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
24393661 AGTAAAACTC
24393671 AAATATAAAAT
1 AAATATAAAAT
*
24393682 ATATATAAAAT
1 AAATATAAAAT
24393693 AAATATAA
1 AAATATAA
24393701 TAAAAGTCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (11 bp):
AAATATAAAAT
Found at i:24403206 original size:21 final size:20
Alignment explanation
Indices: 24403174--24403213 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
24403164 GTTTTCAAAT
24403174 ATAATATTGTTTTA-AATAG
1 ATAATATTGTTTTACAATAG
24403193 ATAATTATGTGTTTTACAATA
1 ATAA-TAT-TGTTTTACAATA
24403214 TTTAGATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 3 0.17
21 7 0.39
22 4 0.22
ACGTcount: A:0.40, C:0.03, G:0.10, T:0.47
Consensus pattern (20 bp):
ATAATATTGTTTTACAATAG
Found at i:24410124 original size:43 final size:43
Alignment explanation
Indices: 24410068--24410262 Score: 236
Period size: 43 Copynumber: 4.6 Consensus size: 43
24410058 ATAGGTGATT
*
24410068 CTTCAGTATATCCGATGATGCACTATGTATGT-CAGTATAGTTG
1 CTTCAGTTTATCCGATGATGCACT-TGTATGTCCAGTATAGTTG
**
24410111 CTTTTGTTTATCCGATGATGCAC-TGTATGTGCCAGTATAGTTG
1 CTTCAGTTTATCCGATGATGCACTTGTATGT-CCAGTATAGTTG
* * *
24410154 CTTCAATTTATTCGATAATGCAC-TGTATGTACCAGTATAGTTG
1 CTTCAGTTTATCCGATGATGCACTTGTATGT-CCAGTATAGTTG
* *
24410197 CTTCAGTTTATCCGATGATACACTTGTGTGT-CAGTATAGTTG
1 CTTCAGTTTATCCGATGATGCACTTGTATGTCCAGTATAGTTG
* * *
24410239 TTTCGGTATATCCGATGATGCACT
1 CTTCAGTTTATCCGATGATGCACT
24410263 ATTTGTACCA
Statistics
Matches: 131, Mismatches: 18, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
41 7 0.05
42 31 0.24
43 87 0.66
44 6 0.05
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.39
Consensus pattern (43 bp):
CTTCAGTTTATCCGATGATGCACTTGTATGTCCAGTATAGTTG
Found at i:24410278 original size:85 final size:86
Alignment explanation
Indices: 24410068--24410281 Score: 263
Period size: 86 Copynumber: 2.5 Consensus size: 86
24410058 ATAGGTGATT
** *
24410068 CTTCAGTATATCCGATGATGCACTATGTATGT--CAGTATAGTTGCTTTTGTTTATCCGATGATG
1 CTTCAGTATATCCGATGATGCACTAT-T-TGTACCAGTATAGTTGCTTCAGTTTATCCGATGATA
24410131 CACTGTATGTGCCAGTATAGTTG
64 CACTGTATGTGCCAGTATAGTTG
* * * * * *
24410154 CTTCAATTTATTCGATAATGCACTGTATGTACCAGTATAGTTGCTTCAGTTTATCCGATGATACA
1 CTTCAGTATATCCGATGATGCACTATTTGTACCAGTATAGTTGCTTCAGTTTATCCGATGATACA
* *
24410219 CT-TGTGTGTCAGTATAGTTG
66 CTGTATGTGCCAGTATAGTTG
* * *
24410239 TTTCGGTATATCCGATGATGCACTATTTGTACCAATATAGTTG
1 CTTCAGTATATCCGATGATGCACTATTTGTACCAGTATAGTTG
24410282 TTTTGGTATA
Statistics
Matches: 106, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
84 3 0.03
85 50 0.47
86 53 0.50
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (86 bp):
CTTCAGTATATCCGATGATGCACTATTTGTACCAGTATAGTTGCTTCAGTTTATCCGATGATACA
CTGTATGTGCCAGTATAGTTG
Found at i:24410284 original size:43 final size:43
Alignment explanation
Indices: 24410069--24410305 Score: 212
Period size: 43 Copynumber: 5.5 Consensus size: 43
24410059 TAGGTGATTC
24410069 TTCAGTATATCCGATGATGCACTATGTATGT--CAGTATAGTTGCT
1 TTCAGTATATCCGATGATGCACTA--TATGTACCAGTATAGTTG-T
* * * * *
24410113 TT-TGTTTATCCGATGATGCACTGTATGTGCCAGTATAGTTGC
1 TTCAGTATATCCGATGATGCACTATATGTACCAGTATAGTTGT
* * * * * *
24410155 TTCAATTTATTCGATAATGCACTGTATGTACCAGTATAGTTGC
1 TTCAGTATATCCGATGATGCACTATATGTACCAGTATAGTTGT
* * * **
24410198 TTCAGTTTATCCGATGATACACT-TGTGTGTCAGTATAGTTGT
1 TTCAGTATATCCGATGATGCACTATATGTACCAGTATAGTTGT
* * *
24410240 TTCGGTATATCCGATGATGCACTATTTGTACCAATATAGTTGT
1 TTCAGTATATCCGATGATGCACTATATGTACCAGTATAGTTGT
** * *
24410283 TTTGGTATATTCGATGTTGCACT
1 TTCAGTATATCCGATGATGCACT
24410306 TCGTTTGCCA
Statistics
Matches: 162, Mismatches: 27, Indels: 9
0.82 0.14 0.05
Matches are distributed among these distances:
41 5 0.03
42 37 0.23
43 118 0.73
44 2 0.01
ACGTcount: A:0.23, C:0.16, G:0.20, T:0.41
Consensus pattern (43 bp):
TTCAGTATATCCGATGATGCACTATATGTACCAGTATAGTTGT
Found at i:24410306 original size:85 final size:84
Alignment explanation
Indices: 24410068--24410306 Score: 257
Period size: 85 Copynumber: 2.8 Consensus size: 84
24410058 ATAGGTGATT
24410068 CTTCAGTATATCCGATGATGCACTATGTATGT--CAGTATAGTTGCTTTTGTTTATCCGATGATG
1 CTTCAGTATATCCGATGATGCACTAT-T-TGTACCAGTATAGTTG-TTTTGTTTATCCGATGATG
24410131 CACTGTATGTGCCAGTATAGTTG
63 CACT-TATGTGCCAGTATAGTTG
* * * * * * ** *
24410154 CTTCAATTTATTCGATAATGCACTGTATGTACCAGTATAGTTGCTTCAGTTTATCCGATGATACA
1 CTTCAGTATATCCGATGATGCACTATTTGTACCAGTATAGTTG-TTTTGTTTATCCGATGATGCA
* *
24410219 CTTGTGTGTCAGTATAGTTG
65 CTTATGTGCCAGTATAGTTG
* * * * * *
24410239 TTTCGGTATATCCGATGATGCACTATTTGTACCAATATAGTTGTTTTGGTATATTCGATGTTGCA
1 CTTCAGTATATCCGATGATGCACTATTTGTACCAGTATAGTTGTTTT-GTTTATCCGATGATGCA
24410304 CTT
65 CTT
24410307 CGTTTGCCAA
Statistics
Matches: 124, Mismatches: 26, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
84 5 0.04
85 66 0.53
86 53 0.43
ACGTcount: A:0.23, C:0.16, G:0.20, T:0.41
Consensus pattern (84 bp):
CTTCAGTATATCCGATGATGCACTATTTGTACCAGTATAGTTGTTTTGTTTATCCGATGATGCAC
TTATGTGCCAGTATAGTTG
Found at i:24410349 original size:19 final size:19
Alignment explanation
Indices: 24410300--24410349 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
24410290 TATTCGATGT
*
24410300 TGCACTTCGTTTGCCAATA
1 TGCACTTCGTGTGCCAATA
* *
24410319 TGAACTTTGTGTGCCAATA
1 TGCACTTCGTGTGCCAATA
*
24410338 TGCACCTCGTGT
1 TGCACTTCGTGT
24410350 ACCAGTATAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (19 bp):
TGCACTTCGTGTGCCAATA
Done.