Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 ID=Chr13-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58321163
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 747533 characters in sequence are not A, C, G, or T
File 83 of 199
Found at i:24999601 original size:86 final size:86
Alignment explanation
Indices: 24999456--24999646 Score: 258
Period size: 86 Copynumber: 2.2 Consensus size: 86
24999446 CTATCACCTC
** * * *
24999456 AGTGCATCATTGGATAAACCGAAGGAAATATACTGGAACATGTAGTGCATCATCGAATAAATCAA
1 AGTGCATCATCAGATAAACCAAAGGAAATATACTAGAACATGTAGTGCATCATCGAATAAACCAA
*
24999521 AGGAAATATACTAGCACAC-AT
66 AGCAAATATACTAGCAC-CTAT
* * *
24999542 AGTGCATCATCAGATAAATCAAAGGAAATATACTAGCACATGTAGTGCATCATCGAATAAACCGA
1 AGTGCATCATCAGATAAACCAAAGGAAATATACTAGAACATGTAGTGCATCATCGAATAAACCAA
* *
24999607 AGCAATTATACTGGCACCTAT
66 AGCAAATATACTAGCACCTAT
*
24999628 AGTGCATCATCAAATAAAC
1 AGTGCATCATCAGATAAAC
24999647 TGAAGTATAA
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
85 1 0.01
86 90 0.99
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.23
Consensus pattern (86 bp):
AGTGCATCATCAGATAAACCAAAGGAAATATACTAGAACATGTAGTGCATCATCGAATAAACCAA
AGCAAATATACTAGCACCTAT
Found at i:25008098 original size:13 final size:13
Alignment explanation
Indices: 25008080--25008105 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25008070 CAATCAAATG
25008080 CACACAAAATAAT
1 CACACAAAATAAT
25008093 CACACAAAATAAT
1 CACACAAAATAAT
25008106 ATTAATAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.23, G:0.00, T:0.15
Consensus pattern (13 bp):
CACACAAAATAAT
Found at i:25010539 original size:13 final size:13
Alignment explanation
Indices: 25010521--25010548 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
25010511 CTCGCAAAGA
25010521 TTGTAATACAAGT
1 TTGTAATACAAGT
25010534 TTGTAATACAAGT
1 TTGTAATACAAGT
25010547 TT
1 TT
25010549 TCTGGGACTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (13 bp):
TTGTAATACAAGT
Found at i:25034634 original size:5 final size:6
Alignment explanation
Indices: 25034600--25034632 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
25034590 TTGAAAATTC
25034600 TTTTTA TTTTTA TTTTTA TTTTTA -TTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
25034633 ATCGATTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:25041721 original size:13 final size:13
Alignment explanation
Indices: 25041705--25041735 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
25041695 ATTTAGTTAT
25041705 TTAATTTCTATCA
1 TTAATTTCTATCA
25041718 TTAATTTCTATCA
1 TTAATTTCTATCA
25041731 TTAAT
1 TTAAT
25041736 AATATTTAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.32, C:0.13, G:0.00, T:0.55
Consensus pattern (13 bp):
TTAATTTCTATCA
Found at i:25044146 original size:17 final size:17
Alignment explanation
Indices: 25044124--25044156 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
25044114 AGTATAGGGG
25044124 CAAAATGAT-AATTTTGC
1 CAAAAT-ATGAATTTTGC
25044141 CAAAATATGAATTTTG
1 CAAAATATGAATTTTG
25044157 GGCTAAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.36
Consensus pattern (17 bp):
CAAAATATGAATTTTGC
Found at i:25044482 original size:29 final size:29
Alignment explanation
Indices: 25044417--25044635 Score: 102
Period size: 30 Copynumber: 7.4 Consensus size: 29
25044407 TCATCGACGA
* * *
25044417 ATGAAAAGGGATAGCTTTGGCTATCAAAT
1 ATGAAAAGGGATAGCTTCGGCTATCGATT
* *
25044446 ACGGAAAGGGATAGCTTCGGCTATCGATT
1 ATGAAAAGGGATAGCTTCGGCTATCGATT
* * * * * **
25044475 ATGAAAAGGGATTG-TGACGACCATCAAAA
1 ATGAAAAGGGATAGCT-TCGGCTATCGATT
* * ** * * *
25044504 ATGAAAAGGGAT-GGTGACAACCATTGAACT
1 ATGAAAAGGGATAGCT-TCGGCTATCG-ATT
* * * *
25044534 ATGAAAAGGGATGGCTTCGACTATTGAACT
1 ATGAAAAGGGATAGCTTCGGCTATCG-ATT
* * *
25044564 ATGAAAAGAGATGGCTTCAGCTAGT-GATCT
1 ATGAAAAGGGATAGCTTCGGCTA-TCGAT-T
* *
25044594 ATGAAAAGGGATAGTTTCGGCTATCAAATT
1 ATGAAAAGGGATAGCTTCGGCTATC-GATT
25044624 ATGAAAAGGGAT
1 ATGAAAAGGGAT
25044636 GGTAACGACC
Statistics
Matches: 150, Mismatches: 32, Indels: 15
0.76 0.16 0.08
Matches are distributed among these distances:
28 2 0.01
29 65 0.43
30 78 0.52
31 5 0.03
ACGTcount: A:0.37, C:0.12, G:0.26, T:0.24
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTCGGCTATCGATT
Found at i:25044540 original size:30 final size:30
Alignment explanation
Indices: 25044474--25044695 Score: 146
Period size: 30 Copynumber: 7.4 Consensus size: 30
25044464 GGCTATCGAT
* *
25044474 TATGAAAAGGGATTGTGACGACCATCAAA-
1 TATGAAAAGGGATGGTGACGACCATTAAAC
* * *
25044503 AATGAAAAGGGATGGTGACAACCATTGAAC
1 TATGAAAAGGGATGGTGACGACCATTAAAC
* * *
25044533 TATGAAAAGGGATGGCT-TCGACTATTGAAC
1 TATGAAAAGGGATGG-TGACGACCATTAAAC
* * * * * *
25044563 TATGAAAAGAGATGGCT-TC-AGCTAGTGATC
1 TATGAAAAGGGATGG-TGACGA-CCATTAAAC
* ** * * * *
25044593 TATGAAAAGGGATAGTTTCGGCTATCAAAT
1 TATGAAAAGGGATGGTGACGACCATTAAAC
* *
25044623 TATGAAAAGGGATGGTAACGACCATCAAAC
1 TATGAAAAGGGATGGTGACGACCATTAAAC
* * * *
25044653 AATGAAAAGGGATGGTGACAACCATCAAAT
1 TATGAAAAGGGATGGTGACGACCATTAAAC
25044683 TATGAAAAGGGAT
1 TATGAAAAGGGAT
25044696 AGCTTCAGCT
Statistics
Matches: 157, Mismatches: 31, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
29 26 0.17
30 130 0.83
31 1 0.01
ACGTcount: A:0.40, C:0.13, G:0.25, T:0.22
Consensus pattern (30 bp):
TATGAAAAGGGATGGTGACGACCATTAAAC
Found at i:25044577 original size:60 final size:59
Alignment explanation
Indices: 25044474--25044766 Score: 162
Period size: 60 Copynumber: 4.9 Consensus size: 59
25044464 GGCTATCGAT
* * * *
25044474 TATGAAAAGGGATTG-TGACGACCATCAAA-AATGAAAAGGGATGGTGACAACCATTGAAC
1 TATGAAAAGGGATGGCT-TCGACTATCAAACTATGAAAAGGGATGGT-ACAACCATTGAAC
** * * * * * *
25044533 TATGAAAAGGGATGGCTTCGACTATTGAACTATGAAAAGAGATGGCTTCAGCTAGTGATC
1 TATGAAAAGGGATGGCTTCGACTATCAAACTATGAAAAGGGATGG-TACAACCATTGAAC
* * * * * **
25044593 TATGAAAAGGGATAGTTTCGGCTATCAAATTATGAAAAGGGATGGTAACGACCATCAAAC
1 TATGAAAAGGGATGGCTTCGACTATCAAACTATGAAAAGGGATGGT-ACAACCATTGAAC
* * * * * * * * ** *
25044653 AATGAAAAGGGATGG-TGACAACCATCAAATTATGAAAAGGGATAGCTTCAGCTGTCGAAC
1 TATGAAAAGGGATGGCT-TCGACTATCAAACTATGAAAAGGGAT-GGTACAACCATTGAAC
** * * * * *
25044713 TATGAAAAGGGATAACTTTGATTATCAAATTACGAAAAAGGATGTGT-CAACCAT
1 TATGAAAAGGGATGGCTTCGACTATCAAACTATGAAAAGGGATG-GTACAACCAT
25044767 CGTATTATTA
Statistics
Matches: 172, Mismatches: 54, Indels: 16
0.71 0.22 0.07
Matches are distributed among these distances:
59 29 0.17
60 139 0.81
61 4 0.02
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.23
Consensus pattern (59 bp):
TATGAAAAGGGATGGCTTCGACTATCAAACTATGAAAAGGGATGGTACAACCATTGAAC
Found at i:25045309 original size:26 final size:25
Alignment explanation
Indices: 25045275--25045340 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
25045265 ATGATTTAAT
* * *
25045275 ATAGCTGAATGATGGAAGATGAAATG
1 ATAGTTGAAT-ATGCAAGATGAAATC
*
25045301 ATAGTTGAATATGCATGATGAAATC
1 ATAGTTGAATATGCAAGATGAAATC
*
25045326 ATAGTTAAATATGCA
1 ATAGTTGAATATGCA
25045341 TATTGCATAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
25 26 0.74
26 9 0.26
ACGTcount: A:0.42, C:0.06, G:0.23, T:0.29
Consensus pattern (25 bp):
ATAGTTGAATATGCAAGATGAAATC
Found at i:25045329 original size:25 final size:25
Alignment explanation
Indices: 25045292--25045341 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
25045282 AATGATGGAA
* *
25045292 GATGAAATGATAGTTGAATATGCAT
1 GATGAAATCATAGTTAAATATGCAT
25045317 GATGAAATCATAGTTAAATATGCAT
1 GATGAAATCATAGTTAAATATGCAT
25045342 ATTGCATAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.20, T:0.32
Consensus pattern (25 bp):
GATGAAATCATAGTTAAATATGCAT
Found at i:25050007 original size:11 final size:11
Alignment explanation
Indices: 25049991--25050015 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
25049981 ACCAAAGCCA
25049991 TCCACCCACTT
1 TCCACCCACTT
25050002 TCCACCCACTT
1 TCCACCCACTT
25050013 TCC
1 TCC
25050016 TTAAAGTAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.56, G:0.00, T:0.28
Consensus pattern (11 bp):
TCCACCCACTT
Found at i:25061426 original size:5 final size:5
Alignment explanation
Indices: 25061416--25061442 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
25061406 AGCTACAATC
25061416 ATTAG ATTAG ATTAG ATTAG ATTAG AT
1 ATTAG ATTAG ATTAG ATTAG ATTAG AT
25061443 GTTTATCTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.19, T:0.41
Consensus pattern (5 bp):
ATTAG
Found at i:25062246 original size:34 final size:34
Alignment explanation
Indices: 25062170--25062246 Score: 84
Period size: 34 Copynumber: 2.3 Consensus size: 34
25062160 GGAAGTTGTT
* * * *
25062170 GCATTTGTTTTGATATTGTTCTTGAATTGTTCTG
1 GCATTTGTTTTGATAGTCTGCTGGAATTGTTCTG
* *
25062204 GCAGTTGTTTTGATAGTCTGCTGGAAATTGTTCTT
1 GCATTTGTTTTGATAGTCTGCTGG-AATTGTTCTG
25062239 G-ATTTGTT
1 GCATTTGTT
25062247 AGTCAGTAGA
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
34 25 0.71
35 10 0.29
ACGTcount: A:0.16, C:0.09, G:0.23, T:0.52
Consensus pattern (34 bp):
GCATTTGTTTTGATAGTCTGCTGGAATTGTTCTG
Found at i:25062276 original size:107 final size:107
Alignment explanation
Indices: 25062089--25062377 Score: 470
Period size: 107 Copynumber: 2.7 Consensus size: 107
25062079 TTTTGTTGGT
* * *
25062089 TTGTTCTGGAAATTGTTTTGATAGTCTGCTGGAAAATGTTATTGATTTGTTAGTGAGTAGAAGAT
1 TTGTTCTGGAAATTGTTTTGATAGTCTGCTGGAAATTGTTCTTGATTTGTTAGTCAGTAGAAGAT
* *
25062154 GAAACTGGAAGTTGTTGCATTTGTTTTGATATTGTTCTTGAA
66 GAAACTGGAAATTGTTGCATTTGTTTTGATATTATTCTTGAA
* *
25062196 TTGTTCTGGCAGTTGTTTTGATAGTCTGCTGGAAATTGTTCTTGATTTGTTAGTCAGTAGAAGAT
1 TTGTTCTGGAAATTGTTTTGATAGTCTGCTGGAAATTGTTCTTGATTTGTTAGTCAGTAGAAGAT
*
25062261 GAAACTGGAAATTGTTGCATTTGTTTTGATATTATTCTTGAT
66 GAAACTGGAAATTGTTGCATTTGTTTTGATATTATTCTTGAA
* * *
25062303 TTGTTCTGGAAATTGTTTTGATTGTCTGCTGGAAATTGTTCTTGATTTGTTAGTCAATAGAATAT
1 TTGTTCTGGAAATTGTTTTGATAGTCTGCTGGAAATTGTTCTTGATTTGTTAGTCAGTAGAAGAT
*
25062368 GAAATTGGAA
66 GAAACTGGAA
25062378 CTTGATTTGT
Statistics
Matches: 168, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
107 168 1.00
ACGTcount: A:0.25, C:0.07, G:0.24, T:0.45
Consensus pattern (107 bp):
TTGTTCTGGAAATTGTTTTGATAGTCTGCTGGAAATTGTTCTTGATTTGTTAGTCAGTAGAAGAT
GAAACTGGAAATTGTTGCATTTGTTTTGATATTATTCTTGAA
Found at i:25063567 original size:37 final size:37
Alignment explanation
Indices: 25063524--25063612 Score: 142
Period size: 37 Copynumber: 2.4 Consensus size: 37
25063514 ATCATAAATA
*
25063524 AATAAACTAATCAATGTTCAAACTTTGAACATGCTTT
1 AATAAACTAATCAATGTTAAAACTTTGAACATGCTTT
* *
25063561 ATTAAACTATTCAATGTTAAAACTTTGAACATGCTTT
1 AATAAACTAATCAATGTTAAAACTTTGAACATGCTTT
*
25063598 AATGAACTAATCAAT
1 AATAAACTAATCAAT
25063613 ATATTTATAC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.36
Consensus pattern (37 bp):
AATAAACTAATCAATGTTAAAACTTTGAACATGCTTT
Found at i:25063864 original size:33 final size:33
Alignment explanation
Indices: 25063827--25063892 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
25063817 AATCTAACAA
*
25063827 ATACCAACAATTAATTTTAGGTTAATTATACAT
1 ATACCAACAATTAATTTTAGGTCAATTATACAT
25063860 ATACCAACAATTAATTTTAGGTCAATTATACAT
1 ATACCAACAATTAATTTTAGGTCAATTATACAT
25063893 GCTTTATGAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.42, C:0.14, G:0.06, T:0.38
Consensus pattern (33 bp):
ATACCAACAATTAATTTTAGGTCAATTATACAT
Found at i:25065468 original size:11 final size:11
Alignment explanation
Indices: 25065452--25065478 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
25065442 TAGAAATTAG
25065452 TTTGTGAAACT
1 TTTGTGAAACT
25065463 TTTGTGAAACT
1 TTTGTGAAACT
25065474 TTTGT
1 TTTGT
25065479 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:25067086 original size:90 final size:91
Alignment explanation
Indices: 25066953--25067159 Score: 317
Period size: 91 Copynumber: 2.3 Consensus size: 91
25066943 TTGATTTTAG
* *
25066953 TAAATTCATATAAGAACATTTTATTATTAAGAAATTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAAATTTATGAAATTATATATCATTATTAAATTAT
* * * *
25067018 ATTTAAT-ATTATTTTTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
* *
25067044 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAAATTTATGAAATTATATATCATTATTAAATTATA
25067109 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
*
25067135 CAAATTCATATAAGAAAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
25067160 GTTATAATTA
Statistics
Matches: 106, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
90 50 0.47
91 56 0.53
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.46
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAAATTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:25067087 original size:47 final size:45
Alignment explanation
Indices: 25066948--25067159 Score: 111
Period size: 45 Copynumber: 4.6 Consensus size: 45
25066938 ATATTTTGAT
* *
25066948 TTTAGTAAATTCATATAAGAACATTTTATTATTAAGAAATTTATGAAA
1 TTTA-TAAATTCATATAAGAA-AATTTATTA-TAAGAATTTTATGAAA
* ** * * *
25066996 -TTATATA-TCAT-T-ATTAAATTATATT-TAATATTATTTTTTTAAA
1 TTTATAAATTCATATAAGAAAATT-TATTATAAGA--ATTTTATGAAA
25067039 TTGTATAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAA
1 TT-TATAAATTCATATAAGAAAATTTATTAT-AAGAATTTTATGAAA
* ** * *
25067086 -TTATATATT-AT-T-ATTAAATTATATGTAATAATAATTATT-TTAAA
1 TTTATAAATTCATATAAGAAAATT-TAT-T-ATAAGAATT-TTATGAAA
*
25067130 TTATACAAATTCATATAAGAAAATTTATTA
1 TT-TATAAATTCATATAAGAAAATTTATTA
25067160 GTTATAATTA
Statistics
Matches: 122, Mismatches: 23, Indels: 40
0.66 0.12 0.22
Matches are distributed among these distances:
41 4 0.03
42 9 0.07
43 18 0.15
44 15 0.12
45 21 0.17
46 15 0.12
47 20 0.16
48 11 0.09
49 9 0.07
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (45 bp):
TTTATAAATTCATATAAGAAAATTTATTATAAGAATTTTATGAAA
Found at i:25067128 original size:26 final size:28
Alignment explanation
Indices: 25067074--25067134 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
25067064 TATTATCAAG
* *
25067074 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
25067102 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
25067128 AATTATA
1 AATTATA
25067135 CAAATTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:25067253 original size:59 final size:57
Alignment explanation
Indices: 25067163--25067494 Score: 193
Period size: 54 Copynumber: 5.6 Consensus size: 57
25067153 TTTATTAGTT
*
25067163 ATAATTATTTTAAATT-TTATTA-A--ATCATATATTTTAATTAAAATATATTTAATA
1 ATAATTA-TTTAAATTATTTTTATAGTATCATATATTTTAATTAAAATATATTTAATA
* * **
25067217 ATAATTATTTCAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAAT
1 ATAATTATTT-AAATTAT-TTTTATAGTATCATATATT-TTAATT-A--AAA-T-ATAT-TTAAT
25067282 A
57 A
* * * * *
25067283 TTAATTATTAAGAATT-TTATTA-A--ATTATATATTTTAATTATAATATATTTAATA
1 ATAATTATTTA-AATTATTTTTATAGTATCATATATTTTAATTAAAATATATTTAATA
* * **
25067337 ATAATTATGTTAAATTATCTTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAAT
1 ATAATTAT-TTAAATTAT-TTTTATAGTATCATATATT-TTAATT-A--AAA-T-ATAT-TTAAT
25067402 A
57 A
* * * * *
25067403 TTAATTATTAAGAATT-TTATTA-A--ATTATATATTTTAATTATAATATATTTAATA
1 ATAATTATTTA-AATTATTTTTATAGTATCATATATTTTAATTAAAATATATTTAATA
*
25067457 ATAATTATGTTAATTTATATTTTATAGTATCATATATT
1 ATAATTAT-TTAAATTAT-TTTTATAGTATCATATATT
25067495 ATGATTTGAG
Statistics
Matches: 207, Mismatches: 37, Indels: 63
0.67 0.12 0.21
Matches are distributed among these distances:
53 3 0.01
54 41 0.20
55 15 0.07
56 14 0.07
57 7 0.03
59 30 0.14
60 16 0.08
61 20 0.10
63 7 0.03
64 10 0.05
65 13 0.06
66 31 0.15
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (57 bp):
ATAATTATTTAAATTATTTTTATAGTATCATATATTTTAATTAAAATATATTTAATA
Found at i:25067307 original size:130 final size:120
Alignment explanation
Indices: 25067175--25067592 Score: 766
Period size: 120 Copynumber: 3.5 Consensus size: 120
25067165 AATTATTTTA
* *
25067175 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAATAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT-AAATTATCTTT
25067239 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
25067295 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATCTTTT
25067360 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
25067415 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATCTTTT
*
25067480 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
25067535 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG-TTAAAT
25067593 ATGATTAAAT
Statistics
Matches: 290, Mismatches: 6, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
120 283 0.98
121 7 0.02
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATCTTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:25067330 original size:16 final size:16
Alignment explanation
Indices: 25067309--25067354 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
25067299 TTATTAAATT
25067309 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
25067325 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
25067340 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
25067355 CTTTTATAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:25067455 original size:15 final size:15
Alignment explanation
Indices: 25067420--25067471 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
25067410 TTAAGAATTT
*
25067420 TATTAAATTAT-ATA
1 TATTTAATTATAATA
25067434 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
25067448 TATTTAATAATAAT-
1 TATTTAATTATAATA
25067462 TATGTTAATT
1 TAT-TTAATT
25067472 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:25067553 original size:61 final size:61
Alignment explanation
Indices: 25067368--25067555 Score: 199
Period size: 61 Copynumber: 3.1 Consensus size: 61
25067358 TTATAGTATC
*
25067368 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
* * * * * * * * * *
25067429 ATATATTTTAATTAT-AATATATTTA-ATAATAAT-TATG-TTAATTTA-TATTTTA-TAGTATC
1 ATATATTATGATT-TGAGTAAATTCATATAAGAATAT-TGATT-ATTAAGAATTTTATTA-AATT
25067488 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
25067549 ATATATT
1 ATATATT
25067556 TTAATTATAA
Statistics
Matches: 96, Mismatches: 21, Indels: 20
0.70 0.15 0.15
Matches are distributed among these distances:
58 3 0.03
59 29 0.30
60 25 0.26
61 36 0.38
62 3 0.03
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
Found at i:25067570 original size:16 final size:16
Alignment explanation
Indices: 25067549--25067590 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
25067539 TTATTAAATT
*
25067549 ATATATTTTAATTATA
1 ATATATTTTAATAATA
25067565 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
25067580 AT-TATGTTTAA
1 ATATAT-TTTAA
25067591 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:25067575 original size:15 final size:15
Alignment explanation
Indices: 25067540--25067581 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
25067530 TTAAGAATTT
*
25067540 TATTAAATTAT-ATA
1 TATTTAATTATAATA
25067554 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
25067568 TATTTAATAATAAT
1 TATTTAATTATAAT
25067582 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:25067823 original size:16 final size:16
Alignment explanation
Indices: 25067802--25067832 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
25067792 TTGATTTGCT
25067802 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
25067818 ATTACGCCTCTATTC
1 ATTACGCCTCTATTC
25067833 TAATACAGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.35, G:0.06, T:0.39
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:25067965 original size:29 final size:28
Alignment explanation
Indices: 25067933--25067993 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 28
25067923 AAAAGCCATT
*
25067933 TTTTTTTACAATTTACCGAAATGGGCCA
1 TTTTTTAACAATTTACCGAAATGGGCCA
** * *
25067961 CTTTTTTAATTATTTACCGGAATTGGCCA
1 -TTTTTTAACAATTTACCGAAATGGGCCA
25067990 TTTT
1 TTTT
25067994 CCGCGAAATC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 4 0.15
29 23 0.85
ACGTcount: A:0.25, C:0.16, G:0.13, T:0.46
Consensus pattern (28 bp):
TTTTTTAACAATTTACCGAAATGGGCCA
Found at i:25075705 original size:7 final size:7
Alignment explanation
Indices: 25075695--25075747 Score: 97
Period size: 7 Copynumber: 7.6 Consensus size: 7
25075685 TTATATACAT
25075695 AATACTA
1 AATACTA
25075702 AATACTA
1 AATACTA
25075709 AATACTA
1 AATACTA
*
25075716 AATACTG
1 AATACTA
25075723 AATACTA
1 AATACTA
25075730 AATACTA
1 AATACTA
25075737 AATACTA
1 AATACTA
25075744 AATA
1 AATA
25075748 TCAATCCACT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 44 1.00
ACGTcount: A:0.57, C:0.13, G:0.02, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:25077033 original size:2 final size:2
Alignment explanation
Indices: 25077026--25077052 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
25077016 AACCTTTACT
25077026 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
25077053 TGCTTGTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:25077921 original size:308 final size:309
Alignment explanation
Indices: 25077363--25077977 Score: 1214
Period size: 308 Copynumber: 2.0 Consensus size: 309
25077353 GGTCGTTGGC
25077363 TTGTAGCTGTATTAAACTTTTCTAGAAAACTTCTGAAAGTCATAAAATACGAAGCTAACATTTCC
1 TTGTAGCTGTATTAAACTTTTCTAGAAAACTTCTGAAAGTCATAAAATACGAAGCTAACATTTCC
25077428 TGATTCCAAAAATTAAGATGCTATGTAGCAGGTACTTGCTTATTGAGGTTTATGGTCTATATCTG
66 TGATTCCAAAAATTAAGATGCTATGTAGCAGGTACTTGCTTATTGAGGTTTATGGTCTATATCTG
25077493 TTCACTGAAAGTGTAGACATTTCAAAACCTGTTAATTTTCGGAGAAAAATTATCATACCATTTCC
131 TTCACTGAAAGTGTAGACATTTCAAAACCTGTTAATTTTCGGAGAAAAATTATCATACCATTTCC
25077558 TTCTGTCATGATAATTATATACATTATACGTTATATTTAATACTTAAGTAATGTTCGGTCTTGTC
196 TTCTGTCATGATAATTATATACATTATACGTTATATTTAATACTTAAGTAATGTTCGGTCTTGTC
25077623 T-AACAGTCACTCTTTTGCTTTCTAACTCAGCATATTACAGTGACATGT
261 TAAACAGTCACTCTTTTGCTTTCTAACTCAGCATATTACAGTGACATGT
*
25077671 TTGTAGCTGTATTAAAGTTTTCTAGAAAACTTCTGAAAGTCATAAAATACGAAGCTAACATTTCC
1 TTGTAGCTGTATTAAACTTTTCTAGAAAACTTCTGAAAGTCATAAAATACGAAGCTAACATTTCC
25077736 TGATTCCAAAAATTAAGATGCTATGTAGCAGGTACTTGCTTATTGAGGTTTATGGTCTATATCTG
66 TGATTCCAAAAATTAAGATGCTATGTAGCAGGTACTTGCTTATTGAGGTTTATGGTCTATATCTG
25077801 TTCACTGAAAGTGTAGACATTTCAAAACCTGTTAATTTTCGGAGAAAAATTATCATACCATTTCC
131 TTCACTGAAAGTGTAGACATTTCAAAACCTGTTAATTTTCGGAGAAAAATTATCATACCATTTCC
25077866 TTCTGTCATGATAATTATATACATTATACGTTATATTTAATACTTAAGTAATGTTCGGTCTTGTC
196 TTCTGTCATGATAATTATATACATTATACGTTATATTTAATACTTAAGTAATGTTCGGTCTTGTC
25077931 TAAACAGTCACTCTTTTGCTTTCTAACTCAGCATATTACAGTGACAT
261 TAAACAGTCACTCTTTTGCTTTCTAACTCAGCATATTACAGTGACAT
25077978 ATGTGTTGGA
Statistics
Matches: 305, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
308 260 0.85
309 45 0.15
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (309 bp):
TTGTAGCTGTATTAAACTTTTCTAGAAAACTTCTGAAAGTCATAAAATACGAAGCTAACATTTCC
TGATTCCAAAAATTAAGATGCTATGTAGCAGGTACTTGCTTATTGAGGTTTATGGTCTATATCTG
TTCACTGAAAGTGTAGACATTTCAAAACCTGTTAATTTTCGGAGAAAAATTATCATACCATTTCC
TTCTGTCATGATAATTATATACATTATACGTTATATTTAATACTTAAGTAATGTTCGGTCTTGTC
TAAACAGTCACTCTTTTGCTTTCTAACTCAGCATATTACAGTGACATGT
Found at i:25078337 original size:39 final size:39
Alignment explanation
Indices: 25078293--25078370 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
25078283 AACCATGTAC
25078293 CTTCAGGTTTCTTATTTGTCCAGAAATTTGCTGAAATGT
1 CTTCAGGTTTCTTATTTGTCCAGAAATTTGCTGAAATGT
25078332 CTTCAGGTTTCTTATTTGTCCAGAAATTTGCTGAAATGT
1 CTTCAGGTTTCTTATTTGTCCAGAAATTTGCTGAAATGT
25078371 TGGTATTCTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.23, C:0.15, G:0.18, T:0.44
Consensus pattern (39 bp):
CTTCAGGTTTCTTATTTGTCCAGAAATTTGCTGAAATGT
Found at i:25084915 original size:69 final size:68
Alignment explanation
Indices: 25084842--25085035 Score: 194
Period size: 69 Copynumber: 2.8 Consensus size: 68
25084832 TAATCTTACG
* *
25084842 TGATAAATCCAAAATAATAGTATATAATAAATTTAAAAATATTAATGATAAATTTGAAATAGATA
1 TGATAAATCTAAAATAATAGTATATAATAAATTTAAAAATATTAATGATAAATTTGAAATA-ACA
*
25084907 TACA
65 AACA
* * * * * *
25084911 TGATAAATTTAAAATAA-AGT-TAATGATGAATTTAAAATAATAATATTGATAAATTAGAAATAA
1 TGATAAATCTAAAATAATAGTAT-ATAATAAATTT-AAA-AATATTAATGATAAATTTGAAATAA
25084974 CAAACA
63 CAAACA
* * * * * *
25084980 TGATAAATCTAAAATAATAATATACAATACACTTAGATAATATTAATGATTAATTT
1 TGATAAATCTAAAATAATAGTATATAATAAATTTA-AAAATATTAATGATAAATTT
25085036 AATAATAATA
Statistics
Matches: 98, Mismatches: 21, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
67 1 0.01
68 12 0.12
69 54 0.55
70 30 0.31
71 1 0.01
ACGTcount: A:0.54, C:0.05, G:0.07, T:0.34
Consensus pattern (68 bp):
TGATAAATCTAAAATAATAGTATATAATAAATTTAAAAATATTAATGATAAATTTGAAATAACAA
ACA
Found at i:25084942 original size:23 final size:22
Alignment explanation
Indices: 25084868--25084996 Score: 102
Period size: 23 Copynumber: 5.7 Consensus size: 22
25084858 ATAGTATATA
*
25084868 ATAAATTTAAAA-ATATTAATG
1 ATAAATTTAAAATAAATTAATG
* *
25084889 ATAAATTTGAAATAGATATACATG
1 ATAAATTTAAAATAAAT-TA-ATG
25084913 ATAAATTTAAAATAAAGTTAATG
1 ATAAATTTAAAATAAA-TTAATG
* * *
25084936 ATGAATTTAAAATAATAATATTG
1 ATAAATTTAAAATAA-ATTAATG
*
25084959 ATAAA-TTAGAAATAACA-AACATG
1 ATAAATTTA-AAATAA-ATTA-ATG
*
25084982 ATAAATCTAAAATAA
1 ATAAATTTAAAATAA
25084997 TAATATACAA
Statistics
Matches: 88, Mismatches: 12, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
21 11 0.12
22 7 0.08
23 47 0.53
24 22 0.25
25 1 0.01
ACGTcount: A:0.57, C:0.03, G:0.08, T:0.33
Consensus pattern (22 bp):
ATAAATTTAAAATAAATTAATG
Found at i:25084949 original size:47 final size:45
Alignment explanation
Indices: 25084842--25085046 Score: 141
Period size: 46 Copynumber: 4.4 Consensus size: 45
25084832 TAATCTTACG
** * * *
25084842 TGATAAATCCAAAATAATAGTATATAATAAATTTAAAA-ATATTAA
1 TGATAAATTTAAAATAATAATA-ATGATAAATTTAAAATAAATTAA
*
25084887 TGATAAATTTGAAATAGAT-ATACATGATAAATTTAAAATAAAGTTAA
1 TGATAAATTTAAAATA-ATAATA-ATGATAAATTTAAAATAAA-TTAA
* * *
25084934 TGATGAATTTAAAATAATAATATTGATAAA-TTAGAAATAACA-AACA
1 TGATAAATTTAAAATAATAATAATGATAAATTTA-AAATAA-ATTA-A
* ** * * *
25084980 TGATAAATCTAAAATAATAATATACAATACACTT-AGATAATATTAA
1 TGATAAATTTAAAATAATAATA-ATGATAAATTTAAAATAA-ATTAA
*
25085026 TGATTAATTTAATAATAATAA
1 TGATAAATTTAA-AATAATAA
25085047 GTATAAACAT
Statistics
Matches: 127, Mismatches: 22, Indels: 20
0.75 0.13 0.12
Matches are distributed among these distances:
45 33 0.26
46 57 0.45
47 35 0.28
48 2 0.02
ACGTcount: A:0.55, C:0.04, G:0.07, T:0.34
Consensus pattern (45 bp):
TGATAAATTTAAAATAATAATAATGATAAATTTAAAATAAATTAA
Found at i:25097044 original size:18 final size:19
Alignment explanation
Indices: 25097021--25097061 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
25097011 TTCTTGTCAA
*
25097021 AAAATAATTAAA-TATTTT
1 AAAATAATTAAATTATGTT
25097039 AAAATAATTAAATTATGTT
1 AAAATAATTAAATTATGTT
25097058 AAAA
1 AAAA
25097062 ATATGAACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (19 bp):
AAAATAATTAAATTATGTT
Found at i:25099720 original size:11 final size:11
Alignment explanation
Indices: 25099706--25099758 Score: 54
Period size: 11 Copynumber: 4.6 Consensus size: 11
25099696 ATTTAATGGT
25099706 TATTTTAATTC
1 TATTTTAATTC
* *
25099717 TATTTTGAGTC
1 TATTTTAATTC
25099728 TATTTTGAATTC
1 TATTTT-AATTC
25099740 ATATATTTAATT-
1 -TAT-TTTAATTC
25099752 TATTTTA
1 TATTTTA
25099759 TAACTTTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
10 4 0.11
11 18 0.51
12 3 0.09
13 7 0.20
14 3 0.09
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.60
Consensus pattern (11 bp):
TATTTTAATTC
Found at i:25103969 original size:26 final size:26
Alignment explanation
Indices: 25103946--25104002 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
25103936 GAATAAAAAT
25103946 AAAAATCAAAATCAAAAGCAAAAAGA
1 AAAAATCAAAATCAAAAGCAAAAAGA
* *
25103972 AAAAATCAAAATCAAAATCAAAAACA
1 AAAAATCAAAATCAAAAGCAAAAAGA
25103998 AAAAA
1 AAAAA
25104003 AAGAAAGAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.75, C:0.12, G:0.04, T:0.09
Consensus pattern (26 bp):
AAAAATCAAAATCAAAAGCAAAAAGA
Found at i:25104018 original size:35 final size:34
Alignment explanation
Indices: 25103946--25104052 Score: 119
Period size: 35 Copynumber: 3.1 Consensus size: 34
25103936 GAATAAAAAT
* * *
25103946 AAAAATCAAAATCAAAAGCAAAAAGAA-AAAA-T
1 AAAAATCAAAATCAAAAACAAAAAAAAGAAAAGA
*
25103978 CAAAATCAAAATCAAAAACAAAAAAAAGAAAGAGA
1 AAAAATCAAAATCAAAAACAAAAAAAAGAAA-AGA
** *
25104013 AAAAATCAAAATCAAAGTCAAAAAAATGAAAATGA
1 AAAAATCAAAATCAAAAACAAAAAAAAGAAAA-GA
25104048 AAAAA
1 AAAAA
25104053 GAGAGAAGAA
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
32 24 0.38
33 3 0.05
34 2 0.03
35 34 0.54
ACGTcount: A:0.74, C:0.09, G:0.07, T:0.09
Consensus pattern (34 bp):
AAAAATCAAAATCAAAAACAAAAAAAAGAAAAGA
Found at i:25104029 original size:20 final size:20
Alignment explanation
Indices: 25103953--25104029 Score: 66
Period size: 20 Copynumber: 3.8 Consensus size: 20
25103943 AATAAAAATC
* *
25103953 AAAATCAAAAGCAAAAAGAA
1 AAAATCAAAATCAAAGAGAA
*
25103973 AAAATCAAAATCAAA-ATCAA
1 AAAATCAAAATCAAAGA-GAA
** **
25103993 AAACAAAAAAAAGAAAGAGAA
1 AAA-ATCAAAATCAAAGAGAA
25104014 AAAATCAAAATCAAAG
1 AAAATCAAAATCAAAG
25104030 TCAAAAAAAT
Statistics
Matches: 43, Mismatches: 11, Indels: 6
0.72 0.18 0.10
Matches are distributed among these distances:
19 1 0.02
20 28 0.65
21 13 0.30
22 1 0.02
ACGTcount: A:0.74, C:0.10, G:0.08, T:0.08
Consensus pattern (20 bp):
AAAATCAAAATCAAAGAGAA
Found at i:25104065 original size:21 final size:21
Alignment explanation
Indices: 25104041--25104085 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
25104031 CAAAAAAATG
* *
25104041 AAAATGAAAAAAGAGAGAAGAA
1 AAAAGGAAAAAA-AGAAAAGAA
25104063 AAAAGGAAAAAAAGAAAAGAA
1 AAAAGGAAAAAAAGAAAAGAA
25104084 AA
1 AA
25104086 GGAGAGGCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (21 bp):
AAAAGGAAAAAAAGAAAAGAA
Found at i:25104948 original size:8 final size:7
Alignment explanation
Indices: 25104929--25104992 Score: 71
Period size: 7 Copynumber: 9.0 Consensus size: 7
25104919 TGAGTTAGAA
25104929 AAAATATG
1 AAAA-ATG
25104937 AAAAATG
1 AAAAATG
25104944 AAAAAATG
1 -AAAAATG
25104952 -AAAATG
1 AAAAATG
25104958 -AAAATG
1 AAAAATG
25104964 AAAAATG
1 AAAAATG
25104971 AAAAAATG
1 -AAAAATG
25104979 AAAAA-G
1 AAAAATG
25104985 TAAAAATG
1 -AAAAATG
25104993 GAGAGGTTAA
Statistics
Matches: 51, Mismatches: 0, Indels: 10
0.84 0.00 0.16
Matches are distributed among these distances:
6 13 0.25
7 19 0.37
8 19 0.37
ACGTcount: A:0.70, C:0.00, G:0.14, T:0.16
Consensus pattern (7 bp):
AAAAATG
Found at i:25106365 original size:50 final size:50
Alignment explanation
Indices: 25106307--25106889 Score: 469
Period size: 50 Copynumber: 11.7 Consensus size: 50
25106297 CCAGTGGAAC
* * *
25106307 AGATTAAAGCCACATCAGTGAATCTTGCTTCCCTGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGTGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * * * * ** *
25106357 AGATTAAAGCTATAACGGTGAATCTTAC-TCCCCAAGCGA-TGCACTGGAAC
1 AGATTAAAGCCACAACAGTGAATCTTACTTCCCCGA-C-ATTGCAGTTAAAA
* * * *
25106407 AGATTAAAGCCACATCGGTGAATCTTGCTTCCTCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGTGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * ** * *
25106457 AGATTAAAGCTACAACAGCGAATCTTAC-TCCCC-AGGTGATGCAGTGGAACA
1 AGATTAAAGCCACAACAGTGAATCTTACTTCCCCGACAT--TGCAGT-TAAAA
* *
25106508 A-ATTAAAGCCACATCAGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGTGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * * * * ** ** *
25106557 AGATTAAAGCTACAACAGCGAATCTTATTTCCCTGGCGGTGCAGTGGAAC
1 AGATTAAAGCCACAACAGTGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * * *
25106607 AGATTAAAGCCACATCGGTGAATCTTTCTTCCCCGACATTGTAGTTAAAA
1 AGATTAAAGCCACAACAGTGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * * * * ** ** *
25106657 AGATTAAAGCTACAACAGCGAATCTTATTTCCCTGGCGGTGCAGTGGAAC
1 AGATTAAAGCCACAACAGTGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * *
25106707 AGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGTGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * * * * ** *
25106757 AGATTAAAGCTACAACAGCGAATCTTATTTCCCTGGCGA-TGCAGTGGAAC
1 AGATTAAAGCCACAACAGTGAATCTTACTTCCCCGAC-ATTGCAGTTAAAA
** * *
25106807 AGATTAAAGCCA-AATTGGTGAATCTTGCTTCCCCGACATTGTAGTTAAAA
1 AGATTAAAGCCACAA-CAGTGAATCTTACTTCCCCGACATTGCAGTTAAAA
* * *
25106857 AGATTAATGCTACAACAGCGAATCTTACTTCCC
1 AGATTAAAGCCACAACAGTGAATCTTACTTCCC
25106890 AGGAGGTTTA
Statistics
Matches: 398, Mismatches: 121, Indels: 28
0.73 0.22 0.05
Matches are distributed among these distances:
48 2 0.01
49 17 0.04
50 359 0.90
51 18 0.05
52 2 0.01
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.26
Consensus pattern (50 bp):
AGATTAAAGCCACAACAGTGAATCTTACTTCCCCGACATTGCAGTTAAAA
Found at i:25106454 original size:100 final size:100
Alignment explanation
Indices: 25106281--25106965 Score: 992
Period size: 100 Copynumber: 6.8 Consensus size: 100
25106271 AATACCAGTT
* * *
25106281 TTACTTCCCAGGCGATCCAGTGGAACAGATTAAAGCCACATCAGTGAATCTTGCTTCCCTGACAT
1 TTACTTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
* * *
25106346 TGCAGTTAAAAAGATTAAAGCTATAACGGTGAATC
66 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
* * * *
25106381 TTACTCCCCAAGCGATGCACTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCTCGACAT
1 TTACTTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
25106446 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
66 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
* * * *
25106481 TTACTCCCCAGGTGATGCAGTGGAACAAATTAAAGCCACATCAGTGAATCTTGCTTCCCCGACAT
1 TTACTTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
25106546 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
66 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
* * * *
25106581 TTATTTCCCTGGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTTCTTCCCCGACAT
1 TTACTTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
*
25106646 TGTAGTTAAAAAGATTAAAGCTACAACAGCGAATC
66 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
* * *
25106681 TTATTTCCCTGGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
1 TTACTTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
25106746 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
66 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
* * * *
25106781 TTATTTCCCTGGCGATGCAGTGGAACAGATTAAAGCCAAATTGGTGAATCTTGCTTCCCCGACAT
1 TTACTTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
* *
25106846 TGTAGTTAAAAAGATTAATGCTACAACAGCGAATC
66 TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
* * ** * * * * ** *
25106881 TTACTTCCCAGGAGGTTTAGTGGAACAGATTGAAGCTACAACAGCAAATCTTGCTTCCTCGACAT
1 TTACTTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
** *
25106946 CACAGTTAAACAGATTAAAG
66 TGCAGTTAAAAAGATTAAAG
25106966 TTACGAGTTA
Statistics
Matches: 533, Mismatches: 52, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 533 1.00
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.25
Consensus pattern (100 bp):
TTACTTCCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
TGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
Found at i:25106911 original size:50 final size:49
Alignment explanation
Indices: 25106281--25106938 Score: 357
Period size: 50 Copynumber: 13.2 Consensus size: 49
25106271 AATACCAGTT
* * * * *
25106281 TTACTTCCCAGGCGATCCAGTGGAACAGATTAAAGCCACATCAGTGAATC
1 TTACTTCCC-GGAGATTCAGTGGAACAGATTAAAGCTACAACAGCGAATC
* * * ** * * * *
25106331 TTGCTTCCCTGACATTGCAGTTAAAAAGATTAAAGCTATAACGGTGAATC
1 TTACTTCCCGGAGATT-CAGTGGAACAGATTAAAGCTACAACAGCGAATC
* * * * * * * * *
25106381 TTACTCCCCAAGCGATGCACTGGAACAGATTAAAGCCACATCGGTGAATC
1 TTACTTCCC-GGAGATTCAGTGGAACAGATTAAAGCTACAACAGCGAATC
* * ** *
25106431 TTGCTTCCTC-GACATTGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
1 TTACTTCC-CGGAGATT-CAGTGGAACAGATTAAAGCTACAACAGCGAATC
* * * * * * *
25106481 TTACTCCCCAGGTGATGCAGTGGAACAAATTAAAGCCACATCAGTGAATC
1 TTACTTCCC-GGAGATTCAGTGGAACAGATTAAAGCTACAACAGCGAATC
* * * ** *
25106531 TTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
1 TTACTTCCCGGAGATT-CAGTGGAACAGATTAAAGCTACAACAGCGAATC
* * * * * * * *
25106581 TTATTTCCCTGGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATC
1 TTACTTCCC-GGAGATTCAGTGGAACAGATTAAAGCTACAACAGCGAATC
* * * * ** *
25106631 TTTCTTCCCCGACATTGTAGTTAAAAAGATTAAAGCTACAACAGCGAATC
1 TTACTTCCCGGAGATT-CAGTGGAACAGATTAAAGCTACAACAGCGAATC
* * * * * * * *
25106681 TTATTTCCCTGGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATC
1 TTACTTCCC-GGAGATTCAGTGGAACAGATTAAAGCTACAACAGCGAATC
* * * ** *
25106731 TTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCTACAACAGCGAATC
1 TTACTTCCCGGAGATT-CAGTGGAACAGATTAAAGCTACAACAGCGAATC
* * * * ** *
25106781 TTATTTCCCTGGCGATGCAGTGGAACAGATTAAAGCCA-AATTGGTGAATC
1 TTACTTCCC-GGAGATTCAGTGGAACAGATTAAAGCTACAA-CAGCGAATC
* * * * ** * *
25106831 TTGCTTCCCCGACATTGTAGTTAAAAAGATTAATGCTACAACAGCGAATC
1 TTACTTCCCGGAGATT-CAGTGGAACAGATTAAAGCTACAACAGCGAATC
* * * *
25106881 TTACTTCCCAGGAGGTTTAGTGGAACAGATTGAAGCTACAACAGCAAATC
1 TTACTTCCC-GGAGATTCAGTGGAACAGATTAAAGCTACAACAGCGAATC
*
25106931 TTGCTTCC
1 TTACTTCC
25106939 TCGACATCAC
Statistics
Matches: 432, Mismatches: 160, Indels: 32
0.69 0.26 0.05
Matches are distributed among these distances:
49 19 0.04
50 393 0.91
51 20 0.05
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (49 bp):
TTACTTCCCGGAGATTCAGTGGAACAGATTAAAGCTACAACAGCGAATC
Found at i:25124865 original size:33 final size:33
Alignment explanation
Indices: 25124817--25124893 Score: 91
Period size: 33 Copynumber: 2.3 Consensus size: 33
25124807 ATACAACATG
* * * *
25124817 CAGTAACAGTCTGGGCCTGAGCGCTATTCAGTAA
1 CAGT-ACAGTGTGGGCCTGAGCCCAATACAGTAA
* *
25124851 CAGTACAGTGTGGGCCTTAGCCCAATACAGTAT
1 CAGTACAGTGTGGGCCTGAGCCCAATACAGTAA
25124884 CAGTACAGTG
1 CAGTACAGTG
25124894 CAATAATGCA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
33 33 0.89
34 4 0.11
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (33 bp):
CAGTACAGTGTGGGCCTGAGCCCAATACAGTAA
Found at i:25125019 original size:26 final size:26
Alignment explanation
Indices: 25124990--25125096 Score: 151
Period size: 26 Copynumber: 4.1 Consensus size: 26
25124980 AACACACTAA
* * *
25124990 TATCGTAGCAAAGCTTCCAGAAATAG
1 TATCGTAGCAAAGCTGCCAGTAACAG
*
25125016 TATCGTAGCAAAGCTGCCAGTAACAA
1 TATCGTAGCAAAGCTGCCAGTAACAG
*
25125042 TATCGTAGCAAAGCTGACAGTAACAG
1 TATCGTAGCAAAGCTGCCAGTAACAG
* *
25125068 TATCGCAGCAAAGCTGCCAGTATCAG
1 TATCGTAGCAAAGCTGCCAGTAACAG
25125094 TAT
1 TAT
25125097 ACTTCCTCCA
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (26 bp):
TATCGTAGCAAAGCTGCCAGTAACAG
Found at i:25125535 original size:27 final size:27
Alignment explanation
Indices: 25125235--25125528 Score: 374
Period size: 27 Copynumber: 10.9 Consensus size: 27
25125225 GGGTATAAAA
*
25125235 GTCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
25125262 GTCATTTTACCCTA-GGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
25125288 ATCATTTTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * **
25125315 GTCATTTTACCATATAGATGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* ** *
25125342 GTCATTCTACCCTATAAGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
25125369 GTCATTTTACCCTATAGTGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
25125396 GTCATTTTACCCTGTGGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
25125423 GTAATTTTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
25125450 GTCATTTTATCTTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
25125477 ATCATTTTATCTTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
25125504 GTCATTCTACCCTATGGGGGTATTT
1 GTCATTTTACCCTATGGGGGTATTT
25125529 TAGTCATAAC
Statistics
Matches: 230, Mismatches: 36, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 24 0.10
27 206 0.90
ACGTcount: A:0.19, C:0.16, G:0.22, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:25125935 original size:23 final size:23
Alignment explanation
Indices: 25125901--25125945 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
25125891 GTAGTATCAT
25125901 ATTTTAACCACAATAATTTAAGG
1 ATTTTAACCACAATAATTTAAGG
*
25125924 ATTTTAATCACAATAATTTAAG
1 ATTTTAACCACAATAATTTAAG
25125946 AACCTACTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.38
Consensus pattern (23 bp):
ATTTTAACCACAATAATTTAAGG
Found at i:25126948 original size:25 final size:25
Alignment explanation
Indices: 25126920--25126981 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 25
25126910 TAGCTCGCAT
*
25126920 GAGCTTACCGTTATTCAGATCAGAG
1 GAGCTTACCGTTATTCAGATCAGAC
* * *
25126945 GAGCTTACTGTTATTTAGCTCAGAC
1 GAGCTTACCGTTATTCAGATCAGAC
25126970 GAGCTTACCGTT
1 GAGCTTACCGTT
25126982 TATAGCTCGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (25 bp):
GAGCTTACCGTTATTCAGATCAGAC
Found at i:25136260 original size:16 final size:17
Alignment explanation
Indices: 25136235--25136267 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
25136225 AAATTCAAGC
*
25136235 GAATGCTTTA-TAATAA
1 GAATGATTTATTAATAA
25136251 GAATGATTTATTAATAA
1 GAATGATTTATTAATAA
25136268 CGTGAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.45, C:0.03, G:0.12, T:0.39
Consensus pattern (17 bp):
GAATGATTTATTAATAA
Found at i:25145960 original size:91 final size:91
Alignment explanation
Indices: 25145805--25145987 Score: 366
Period size: 91 Copynumber: 2.0 Consensus size: 91
25145795 TCAAGAAAGA
25145805 GATTATTAAGTGGCTTGATGCTAGCATCATTTACCCGATTTCAGACAGCTCATGGGTGAGTCCTG
1 GATTATTAAGTGGCTTGATGCTAGCATCATTTACCCGATTTCAGACAGCTCATGGGTGAGTCCTG
25145870 TACAATGTGTACCTAAGAAAGGAGGT
66 TACAATGTGTACCTAAGAAAGGAGGT
25145896 GATTATTAAGTGGCTTGATGCTAGCATCATTTACCCGATTTCAGACAGCTCATGGGTGAGTCCTG
1 GATTATTAAGTGGCTTGATGCTAGCATCATTTACCCGATTTCAGACAGCTCATGGGTGAGTCCTG
25145961 TACAATGTGTACCTAAGAAAGGAGGT
66 TACAATGTGTACCTAAGAAAGGAGGT
25145987 G
1 G
25145988 TCATAGTGGT
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 92 1.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (91 bp):
GATTATTAAGTGGCTTGATGCTAGCATCATTTACCCGATTTCAGACAGCTCATGGGTGAGTCCTG
TACAATGTGTACCTAAGAAAGGAGGT
Found at i:25152139 original size:18 final size:18
Alignment explanation
Indices: 25152116--25152151 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
25152106 GATGCTTGAA
25152116 AATTTAATTAAATCGCTC
1 AATTTAATTAAATCGCTC
25152134 AATTTAATTAAATCGCTC
1 AATTTAATTAAATCGCTC
25152152 TTTCACTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.17, G:0.06, T:0.39
Consensus pattern (18 bp):
AATTTAATTAAATCGCTC
Found at i:25158448 original size:14 final size:14
Alignment explanation
Indices: 25158429--25158456 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
25158419 CCAATTTATT
25158429 AATGAATTATTAAA
1 AATGAATTATTAAA
25158443 AATGAATTATTAAA
1 AATGAATTATTAAA
25158457 TATAAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (14 bp):
AATGAATTATTAAA
Found at i:25158450 original size:26 final size:26
Alignment explanation
Indices: 25158406--25158455 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
25158396 CAATTTACTT
25158406 AATTAATTAAAAACCAATTTATTAATG
1 AATTAATTAAAAACCAA-TTATTAATG
**
25158433 AATT-ATTAAAAATGAATTATTAA
1 AATTAATTAAAAACCAATTATTAA
25158456 ATATAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 10 0.48
27 4 0.19
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (26 bp):
AATTAATTAAAAACCAATTATTAATG
Found at i:25161708 original size:14 final size:14
Alignment explanation
Indices: 25161689--25161717 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
25161679 ATAAATGATC
25161689 ATTTTAGTATAGTT
1 ATTTTAGTATAGTT
25161703 ATTTTAGTATAGTT
1 ATTTTAGTATAGTT
25161717 A
1 A
25161718 AATCTGTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (14 bp):
ATTTTAGTATAGTT
Found at i:25167498 original size:33 final size:34
Alignment explanation
Indices: 25167456--25167551 Score: 106
Period size: 34 Copynumber: 2.9 Consensus size: 34
25167446 TGGAATCCAT
* * *
25167456 AGAGATAGTCTGTTGGGACACTAAACACAAAA-A
1 AGAGATAGTCCGCTGGGACAATAAACACAAAACA
* *
25167489 AGAGATAGTCCGCTGGGATAAAAAAACACAAAACA
1 AGAGATAGTCCGCTGGGA-CAATAAACACAAAACA
* *
25167524 A-AGATAGTCCGCTGAGACAGTAAACACA
1 AGAGATAGTCCGCTGGGACAATAAACACA
25167552 GATAGAGTCC
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
33 24 0.46
34 26 0.50
35 2 0.04
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.15
Consensus pattern (34 bp):
AGAGATAGTCCGCTGGGACAATAAACACAAAACA
Found at i:25169540 original size:54 final size:53
Alignment explanation
Indices: 25169463--25169568 Score: 158
Period size: 54 Copynumber: 2.0 Consensus size: 53
25169453 TCTTCATTTT
* *
25169463 GGTTTCCATAAAGAGATAATCATAGACTTATTAATTAAATTTAGTTCTTTTAG
1 GGTTTCCATAAAGAGATAATCATAGACTTATGAATTAAATTTACTTCTTTTAG
* **
25169516 GGTTTCCATAAGGAAGATAATCATAGACTTATGAATTCGATTTACTTCTTTTA
1 GGTTTCCATAAAG-AGATAATCATAGACTTATGAATTAAATTTACTTCTTTTA
25169569 AGGCATTAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
53 12 0.26
54 35 0.74
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (53 bp):
GGTTTCCATAAAGAGATAATCATAGACTTATGAATTAAATTTACTTCTTTTAG
Found at i:25170257 original size:22 final size:22
Alignment explanation
Indices: 25170232--25170277 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
25170222 TTTAACAAAC
25170232 TATTTTCTTAAAATTAGAATTA
1 TATTTTCTTAAAATTAGAATTA
25170254 TATTTTCTTAAAATTAGAATTA
1 TATTTTCTTAAAATTAGAATTA
25170276 TA
1 TA
25170278 CTTATAATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.50
Consensus pattern (22 bp):
TATTTTCTTAAAATTAGAATTA
Found at i:25170286 original size:18 final size:18
Alignment explanation
Indices: 25170238--25170294 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 18
25170228 AAACTATTTT
25170238 CTTAAAATTAGAATTATA
1 CTTAAAATTAGAATTATA
25170256 TTTTCTTAAAATTAGAATTATA
1 ----CTTAAAATTAGAATTATA
* *
25170278 CTTATAATTATAATTAT
1 CTTAAAATTAGAATTAT
25170295 TATCTTAAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
18 15 0.45
22 18 0.55
ACGTcount: A:0.44, C:0.05, G:0.04, T:0.47
Consensus pattern (18 bp):
CTTAAAATTAGAATTATA
Found at i:25170406 original size:3 final size:3
Alignment explanation
Indices: 25170398--25170429 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
25170388 CATATCTAGT
25170398 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
25170430 GTAGTAGTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:25174338 original size:24 final size:24
Alignment explanation
Indices: 25174309--25174356 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
25174299 ATATAGTAAA
*
25174309 TTTTATT-TAATTATGATTTGAATT
1 TTTTATTATAATAAT-ATTTGAATT
25174333 TTTTATTATAATAATATTTGAATT
1 TTTTATTATAATAATATTTGAATT
25174357 GTTAAATAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 16 0.73
25 6 0.27
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.60
Consensus pattern (24 bp):
TTTTATTATAATAATATTTGAATT
Found at i:25181865 original size:12 final size:12
Alignment explanation
Indices: 25181848--25181881 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
25181838 TTACTAGTTT
25181848 GGACATGGGCTA
1 GGACATGGGCTA
25181860 GGACATGGGCTA
1 GGACATGGGCTA
*
25181872 GGACACGGGC
1 GGACATGGGC
25181882 GTGTGTCCCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.24, C:0.21, G:0.44, T:0.12
Consensus pattern (12 bp):
GGACATGGGCTA
Found at i:25183102 original size:27 final size:27
Alignment explanation
Indices: 25183069--25183170 Score: 118
Period size: 27 Copynumber: 3.8 Consensus size: 27
25183059 TCTTTAGAGT
*
25183069 TCGCCACAAAGGCTTCCTTTTCATAGA
1 TCGCCACAAAGACTTCCTTTTCATAGA
*
25183096 TCGCCACAAAGAC-TCTATTTTCATAGA
1 TCGCCACAAAGACTTC-CTTTTCATAGA
* * *
25183123 TCGCCAGAAAGACTTCTTTTTCATTGA
1 TCGCCACAAAGACTTCCTTTTCATAGA
*
25183150 TAGCCACAAA-AGCTTCCTTTT
1 TCGCCACAAAGA-CTTCCTTTT
25183171 TCTGGCATGT
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
26 3 0.05
27 59 0.92
28 2 0.03
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.32
Consensus pattern (27 bp):
TCGCCACAAAGACTTCCTTTTCATAGA
Found at i:25195559 original size:42 final size:42
Alignment explanation
Indices: 25195453--25195559 Score: 101
Period size: 42 Copynumber: 2.5 Consensus size: 42
25195443 TTAACTCATA
* * ** *
25195453 TGAGTTTCCGTTCAACCCTAATGGGTTTCCGTTTAGCTCTAT
1 TGAGCTTCCGTTCAACCCTTATGAATTTCCGTTCAGCTCTAT
** * *
25195495 TGAGCTTTTGTTTAACCTTTATGAATTTCCGTTCAGCT-T-T
1 TGAGCTTCCGTTCAACCCTTATGAATTTCCGTTCAGCTCTAT
25195535 TACGAGCTTCCGTTCAACCCTTATG
1 T--GAGCTTCCGTTCAACCCTTATG
25195560 GGTTTTTGTT
Statistics
Matches: 50, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
40 2 0.04
41 1 0.02
42 47 0.94
ACGTcount: A:0.18, C:0.23, G:0.17, T:0.42
Consensus pattern (42 bp):
TGAGCTTCCGTTCAACCCTTATGAATTTCCGTTCAGCTCTAT
Found at i:25196111 original size:14 final size:14
Alignment explanation
Indices: 25196092--25196123 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
25196082 AATGATATGC
25196092 TTATAACTGGTGTG
1 TTATAACTGGTGTG
25196106 TTATAACTGGTGTG
1 TTATAACTGGTGTG
25196120 TTAT
1 TTAT
25196124 GGATATGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.22, C:0.06, G:0.25, T:0.47
Consensus pattern (14 bp):
TTATAACTGGTGTG
Found at i:25207635 original size:21 final size:21
Alignment explanation
Indices: 25207609--25207676 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
25207599 TGTTTTTGAG
25207609 TACTGAATTGAATTGTGAAGT
1 TACTGAATTGAATTGTGAAGT
* *
25207630 TACTGAA-T--ATTGTTATGT
1 TACTGAATTGAATTGTGAAGT
* *
25207648 GTACTGCATTGAATTGTGAAAT
1 -TACTGAATTGAATTGTGAAGT
25207670 TACTGAA
1 TACTGAA
25207677 GTAATGAATT
Statistics
Matches: 36, Mismatches: 7, Indels: 8
0.71 0.14 0.16
Matches are distributed among these distances:
18 8 0.22
19 6 0.17
20 2 0.06
21 13 0.36
22 7 0.19
ACGTcount: A:0.32, C:0.07, G:0.21, T:0.40
Consensus pattern (21 bp):
TACTGAATTGAATTGTGAAGT
Found at i:25207662 original size:40 final size:41
Alignment explanation
Indices: 25207589--25207676 Score: 133
Period size: 40 Copynumber: 2.2 Consensus size: 41
25207579 CATTATGGAA
* *
25207589 TACTGAATATTGTTTTTGAGTACTGAATTGAATTGTGAAGT
1 TACTGAATATTGTTTATGAGTACTGAATTGAATTGTGAAAT
* *
25207630 TACTGAATATTG-TTATGTGTACTGCATTGAATTGTGAAAT
1 TACTGAATATTGTTTATGAGTACTGAATTGAATTGTGAAAT
25207670 TACTGAA
1 TACTGAA
25207677 GTAATGAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
40 31 0.72
41 12 0.28
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.42
Consensus pattern (41 bp):
TACTGAATATTGTTTATGAGTACTGAATTGAATTGTGAAAT
Found at i:25222681 original size:31 final size:30
Alignment explanation
Indices: 25222646--25222704 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
25222636 TTTACATGAA
*
25222646 ATACATGGAAAT-GATTTTACATGATATATTG
1 ATACAT-GAAATGGATGTTACATG-TATATTG
*
25222677 ATACATGATATGGATGTTACATGTATAT
1 ATACATGAAATGGATGTTACATGTATAT
25222705 GGAAACTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 9 0.36
31 16 0.64
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.39
Consensus pattern (30 bp):
ATACATGAAATGGATGTTACATGTATATTG
Found at i:25228832 original size:25 final size:25
Alignment explanation
Indices: 25228763--25228869 Score: 98
Period size: 25 Copynumber: 4.3 Consensus size: 25
25228753 GTATGCTCAT
*
25228763 ACGAGCT-ATGAATCGCTATGCTCTC
1 ACGAGCTGA-GAATCGCTAAGCTCTC
* *
25228788 TCGAGCTG-GAAATTAG-TAAGCTCAT-
1 ACGAGCTGAG-AA-TCGCTAAGCTC-TC
25228813 ACGAGCTGAGAATCGCTAAGCTCTC
1 ACGAGCTGAGAATCGCTAAGCTCTC
* *
25228838 ACGAGCT-ACAATCGGTAAGCTCTC
1 ACGAGCTGAGAATCGCTAAGCTCTC
25228862 ACGAGCTG
1 ACGAGCTG
25228870 CAATTGGTAT
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
24 26 0.39
25 37 0.55
26 4 0.06
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.23
Consensus pattern (25 bp):
ACGAGCTGAGAATCGCTAAGCTCTC
Found at i:25228856 original size:24 final size:24
Alignment explanation
Indices: 25228803--25228883 Score: 92
Period size: 24 Copynumber: 3.3 Consensus size: 24
25228793 CTGGAAATTA
*
25228803 GTAAGCTCAT-ACGAGCTGAGAATCG
1 GTAAGCTC-TCACGAGCT-ACAATCG
*
25228828 CTAAGCTCTCACGAGCTACAATCG
1 GTAAGCTCTCACGAGCTACAATCG
* *
25228852 GTAAGCTCTCACGAGCTGCAATTG
1 GTAAGCTCTCACGAGCTACAATCG
*
25228876 GTATGCTC
1 GTAAGCTC
25228884 ATATGAGCTG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
24 35 0.71
25 14 0.29
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.23
Consensus pattern (24 bp):
GTAAGCTCTCACGAGCTACAATCG
Found at i:25234813 original size:17 final size:18
Alignment explanation
Indices: 25234793--25234833 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 18
25234783 AAAATTCTAC
*
25234793 AAAAAGAAAAATGA-AAT
1 AAAAAGAAAAATAAGAAT
*
25234810 -AAAATAAAAATAAGAAT
1 AAAAAGAAAAATAAGAAT
25234827 AAAAAGA
1 AAAAAGA
25234834 TGAAGTGTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 3
0.76 0.12 0.12
Matches are distributed among these distances:
16 11 0.58
17 3 0.16
18 5 0.26
ACGTcount: A:0.78, C:0.00, G:0.10, T:0.12
Consensus pattern (18 bp):
AAAAAGAAAAATAAGAAT
Found at i:25239482 original size:22 final size:23
Alignment explanation
Indices: 25239450--25239522 Score: 73
Period size: 22 Copynumber: 3.3 Consensus size: 23
25239440 AGATGTCTGG
25239450 GTGGCAT--TCTGATT-GCCTTT
1 GTGGCATACTCTGATTAGCCTTT
* * *
25239470 ATGGCGTACTCTGATTTGGCCTTT
1 GTGGCATACTCTGA-TTAGCCTTT
*
25239494 GTGGCATATTCT-ATTAGCCTTT
1 GTGGCATACTCTGATTAGCCTTT
25239516 GTGGCAT
1 GTGGCAT
25239523 TTTGCTAGAC
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
20 5 0.12
22 20 0.47
23 3 0.07
24 15 0.35
ACGTcount: A:0.14, C:0.19, G:0.25, T:0.42
Consensus pattern (23 bp):
GTGGCATACTCTGATTAGCCTTT
Found at i:25266245 original size:17 final size:17
Alignment explanation
Indices: 25266218--25266259 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 17
25266208 AATGACTAAG
25266218 TTTTTCTACTTTTGTGA-C
1 TTTTTC-ACTTTT-TGATC
25266236 TTTTTCACTTTTTGATC
1 TTTTTCACTTTTTGATC
25266253 TTTTTCA
1 TTTTTCA
25266260 TACATCACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.13
17 14 0.61
18 6 0.26
ACGTcount: A:0.12, C:0.17, G:0.07, T:0.64
Consensus pattern (17 bp):
TTTTTCACTTTTTGATC
Found at i:25274649 original size:30 final size:30
Alignment explanation
Indices: 25274615--25274816 Score: 287
Period size: 30 Copynumber: 6.7 Consensus size: 30
25274605 ATGGTCGTCA
* * **
25274615 CCATCCCTTTCCATAATTTGATAGTTGAAG
1 CCATCCCTTTTCATAATTCGATAGCCGAAG
*
25274645 CCATCCCTTTACATAATTCGATAGCCGAAG
1 CCATCCCTTTTCATAATTCGATAGCCGAAG
* *
25274675 CCATCCCCTTTCATAATTCAATAGCCGAAG
1 CCATCCCTTTTCATAATTCGATAGCCGAAG
* *
25274705 CCATCCATTTTCATAAATCGATAGCCGAAG
1 CCATCCCTTTTCATAATTCGATAGCCGAAG
*
25274735 CCATCCCTTTTCATAATTCGATAGCTGAAG
1 CCATCCCTTTTCATAATTCGATAGCCGAAG
* *
25274765 CCATCCCTTTTCATAATTTGATAGTCGAAG
1 CCATCCCTTTTCATAATTCGATAGCCGAAG
*
25274795 CCATCCATTTTCATAATTCGAT
1 CCATCCCTTTTCATAATTCGAT
25274817 GGTTGTCACC
Statistics
Matches: 153, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 153 1.00
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.32
Consensus pattern (30 bp):
CCATCCCTTTTCATAATTCGATAGCCGAAG
Found at i:25278658 original size:25 final size:25
Alignment explanation
Indices: 25278628--25278676 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
25278618 TAATTAAAAT
*
25278628 ATACTAAAATTTCTTGTATTCAAAC
1 ATACTAAAATATCTTGTATTCAAAC
25278653 ATACTAAAATATCTTGTATTCAAA
1 ATACTAAAATATCTTGTATTCAAA
25278677 GTATGAAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.43, C:0.14, G:0.04, T:0.39
Consensus pattern (25 bp):
ATACTAAAATATCTTGTATTCAAAC
Found at i:25280235 original size:20 final size:20
Alignment explanation
Indices: 25280192--25280235 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
25280182 TCTATCATTT
** *
25280192 ATTTATTTATTATTTTTAAT
1 ATTTATTTATTATTCCTAAA
25280212 ATTTATTTATTATTCCTAAA
1 ATTTATTTATTATTCCTAAA
25280232 ATTT
1 ATTT
25280236 CTTATTTTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (20 bp):
ATTTATTTATTATTCCTAAA
Found at i:25281387 original size:44 final size:44
Alignment explanation
Indices: 25281305--25281388 Score: 100
Period size: 44 Copynumber: 1.9 Consensus size: 44
25281295 TAAGGTATAC
* **
25281305 GGTATATGATGTCAGACCATAGATGAAAGATGTTATGGCAAACA
1 GGTATATGATGTAAGACCATAGATGAAAGATGCCATGGCAAACA
*
25281349 GGTATAATGA-GTAAGACCATGGATGAAAGACT-CCATGGCA
1 GGTAT-ATGATGTAAGACCATAGATGAAAGA-TGCCATGGCA
25281389 TCATATAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
44 29 0.85
45 5 0.15
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.23
Consensus pattern (44 bp):
GGTATATGATGTAAGACCATAGATGAAAGATGCCATGGCAAACA
Found at i:25281514 original size:31 final size:31
Alignment explanation
Indices: 25281479--25281609 Score: 102
Period size: 31 Copynumber: 4.2 Consensus size: 31
25281469 CTTGGATAGT
* *
25281479 AAACACATAATAGATAGTCTGCTGGGACAGC
1 AAACACAGAACAGATAGTCTGCTGGGACAGC
* * * * *
25281510 AAACACAGAATAAATTGTCTGCTTGGACAGT
1 AAACACAGAACAGATAGTCTGCTGGGACAGC
* * * ** *
25281541 AAATACAAAACAGAGAGTCTATTGGGACAGT
1 AAACACAGAACAGATAGTCTGCTGGGACAGC
* * *
25281572 AAACATAGAACAGATATTCTGCCGGGACA-C
1 AAACACAGAACAGATAGTCTGCTGGGACAGC
25281602 TAAACACA
1 -AAACACA
25281610 AGTTGGTCTG
Statistics
Matches: 75, Mismatches: 24, Indels: 2
0.74 0.24 0.02
Matches are distributed among these distances:
31 75 1.00
ACGTcount: A:0.42, C:0.18, G:0.20, T:0.20
Consensus pattern (31 bp):
AAACACAGAACAGATAGTCTGCTGGGACAGC
Found at i:25281593 original size:62 final size:62
Alignment explanation
Indices: 25281459--25281610 Score: 146
Period size: 62 Copynumber: 2.5 Consensus size: 62
25281449 GTATCCAAAG
* * * * * *
25281459 AGATAGTTC-GCTTGGATAGTAAACACATAATAGATAGTCTGCTGGGACAGCAAACACAGAAT
1 AGATA-TTCTGCTTGGACAGTAAACACAAAACAGAGAGTCTACTGGGACAGCAAACACAGAAC
* * * * *
25281521 AAAT-TGTCTGCTTGGACAGTAAATACAAAACAGAGAGTCTATTGGGACAGTAAACATAGAAC
1 AGATAT-TCTGCTTGGACAGTAAACACAAAACAGAGAGTCTACTGGGACAGCAAACACAGAAC
** *
25281583 AGATATTCTGCCGGGACACTAAACACAA
1 AGATATTCTGCTTGGACAGTAAACACAA
25281611 GTTGGTCTGC
Statistics
Matches: 71, Mismatches: 16, Indels: 6
0.76 0.17 0.06
Matches are distributed among these distances:
60 1 0.01
61 2 0.03
62 67 0.94
63 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.22
Consensus pattern (62 bp):
AGATATTCTGCTTGGACAGTAAACACAAAACAGAGAGTCTACTGGGACAGCAAACACAGAAC
Found at i:25285629 original size:19 final size:19
Alignment explanation
Indices: 25285583--25285631 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
25285573 TTCAAAATAG
*
25285583 CTCAAACTAAACACCAAGA
1 CTCAAACTCAACACCAAGA
25285602 CTCAAACTCAACACCAAGA
1 CTCAAACTCAACACCAAGA
25285621 CTCAAACTCAA
1 CTCAAACTCAA
25285632 GCATAAGCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.49, C:0.35, G:0.04, T:0.12
Consensus pattern (19 bp):
CTCAAACTCAACACCAAGA
Found at i:25296302 original size:31 final size:31
Alignment explanation
Indices: 25296261--25296528 Score: 296
Period size: 31 Copynumber: 8.8 Consensus size: 31
25296251 ATCCAATGCT
* *
25296261 CAAATC-AATTCAGCAATATATATCCATATA
1 CAAATCAAATTCGGCAATGTATATCCATATA
* * *
25296291 CGAATCAAATTCGGCAATTTATATCTATATA
1 CAAATCAAATTCGGCAATGTATATCCATATA
* *
25296322 CAAATC-AATTTGGCAATGAATATCCATATA
1 CAAATCAAATTCGGCAATGTATATCCATATA
* *
25296352 CAAATCAAATTCAGCAATGTATAACCATATA
1 CAAATCAAATTCGGCAATGTATATCCATATA
* * *
25296383 CAAATCAAATTCAGCAACGTATATCTATATA
1 CAAATCAAATTCGGCAATGTATATCCATATA
*
25296414 C-AATC-AATTCGGCAATTTATATCCATATA
1 CAAATCAAATTCGGCAATGTATATCCATATA
* * * * *
25296443 -AAATTTAAATCCGACAATGTATAACCATAAA
1 CAAA-TCAAATTCGGCAATGTATATCCATATA
* * *
25296474 CAAATCAAATTCGGCAATTTATTTCTATATA
1 CAAATCAAATTCGGCAATGTATATCCATATA
25296505 CAAATC-AATTCGGCAATGTATATC
1 CAAATCAAATTCGGCAATGTATATC
25296529 TATAAACTGA
Statistics
Matches: 196, Mismatches: 36, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
29 22 0.11
30 52 0.27
31 119 0.61
32 3 0.02
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.31
Consensus pattern (31 bp):
CAAATCAAATTCGGCAATGTATATCCATATA
Found at i:25296464 original size:91 final size:92
Alignment explanation
Indices: 25296261--25296528 Score: 364
Period size: 91 Copynumber: 2.9 Consensus size: 92
25296251 ATCCAATGCT
* * * *
25296261 CAAATC-AATTCAGCAATATATATCCATATACGAATCAAATTCGGCAATTTATATCTATATACAA
1 CAAATCAAATCCAGCAATGTATAACCATATACAAATCAAATTCGGCAATTTATATCTATATACAA
* *
25296325 ATCAATTTGGCAATGAATATCCATATA
66 ATCAATTCGGCAATGTATATCCATATA
* * **
25296352 CAAATCAAATTCAGCAATGTATAACCATATACAAATCAAATTCAGCAACGTATATCTATATAC-A
1 CAAATCAAATCCAGCAATGTATAACCATATACAAATCAAATTCGGCAATTTATATCTATATACAA
*
25296416 ATCAATTCGGCAATTTATATCCATATA
66 ATCAATTCGGCAATGTATATCCATATA
* * *
25296443 -AAATTTAAATCC-GACAATGTATAACCATAAACAAATCAAATTCGGCAATTTATTTCTATATAC
1 CAAA-TCAAATCCAG-CAATGTATAACCATATACAAATCAAATTCGGCAATTTATATCTATATAC
25296506 AAATCAATTCGGCAATGTATATC
64 AAATCAATTCGGCAATGTATATC
25296529 TATAAACTGA
Statistics
Matches: 156, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
90 4 0.03
91 81 0.52
92 71 0.46
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.31
Consensus pattern (92 bp):
CAAATCAAATCCAGCAATGTATAACCATATACAAATCAAATTCGGCAATTTATATCTATATACAA
ATCAATTCGGCAATGTATATCCATATA
Found at i:25296535 original size:61 final size:61
Alignment explanation
Indices: 25296261--25296528 Score: 317
Period size: 61 Copynumber: 4.4 Consensus size: 61
25296251 ATCCAATGCT
* * * *
25296261 CAAATCAATTCAGCAATATATATCCATATACGAATCAAATTCGGCAATTTATATCTATATA
1 CAAATCAATTCGGCAATGTATATCCATATACAAATCAAATTCGGCAATTTATATCCATATA
* * * * *
25296322 CAAATCAATTTGGCAATGAATATCCATATACAAATCAAATTCAGCAATGTATAACCATATA
1 CAAATCAATTCGGCAATGTATATCCATATACAAATCAAATTCGGCAATTTATATCCATATA
* * *
25296383 CAAATCAAATTCAGCAACGTATATCTATATAC-AATC-AATTCGGCAATTTATATCCATATA
1 CAAATC-AATTCGGCAATGTATATCCATATACAAATCAAATTCGGCAATTTATATCCATATA
* * * * * * *
25296443 -AAATTTAAATCCGACAATGTATAACCATAAACAAATCAAATTCGGCAATTTATTTCTATATA
1 CAAA--TCAATTCGGCAATGTATATCCATATACAAATCAAATTCGGCAATTTATATCCATATA
25296505 CAAATCAATTCGGCAATGTATATC
1 CAAATCAATTCGGCAATGTATATC
25296529 TATAAACTGA
Statistics
Matches: 170, Mismatches: 31, Indels: 12
0.80 0.15 0.06
Matches are distributed among these distances:
59 3 0.02
60 39 0.23
61 83 0.49
62 42 0.25
63 3 0.02
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.31
Consensus pattern (61 bp):
CAAATCAATTCGGCAATGTATATCCATATACAAATCAAATTCGGCAATTTATATCCATATA
Found at i:25303517 original size:31 final size:31
Alignment explanation
Indices: 25303476--25303742 Score: 344
Period size: 31 Copynumber: 8.7 Consensus size: 31
25303466 ATCCAATGGT
* *
25303476 CAAATC-AATTCGGCAATATATATCCATATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
* *
25303506 CGAATCAAATTCGGCAATATATATCTATATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
* * *
25303537 CAAATC-AATTCGACAATGAATATCCATATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
* *
25303567 CAAATCAAATTCGGCAATGTATAACCATATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
25303598 CAAATCAAATTCGGCAATGTATATCTATATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
*
25303629 CAAATC-AATTCGGCAATGTATATCTATAAA
1 CAAATCAAATTCGGCAATGTATATCTATATA
* * * *
25303659 CAGATTAAATTTGGCAATGTATATCTATAAA
1 CAAATCAAATTCGGCAATGTATATCTATATA
* *
25303690 CAAATCAAATTCGGTAATGTATATCTTTATA
1 CAAATCAAATTCGGCAATGTATATCTATATA
* *
25303721 CAAATC-AATTCAGTAATGTATA
1 CAAATCAAATTCGGCAATGTATA
25303743 AAACATATAC
Statistics
Matches: 211, Mismatches: 23, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
30 73 0.35
31 138 0.65
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.31
Consensus pattern (31 bp):
CAAATCAAATTCGGCAATGTATATCTATATA
Found at i:25303582 original size:92 final size:92
Alignment explanation
Indices: 25303476--25303731 Score: 370
Period size: 92 Copynumber: 2.8 Consensus size: 92
25303466 ATCCAATGGT
* * *
25303476 CAAATC-AATTCGGCAATATATATCCATATACGAATCAAATTCGGCAATATATATCTATATACAA
1 CAAATCAAATTCGGCAATGTATATCCATATACAAATCAAATTCGGCAATGTATATCTATATACAA
*
25303540 ATCAATTCGACAATGAATATCCATATA
66 ATCAATTCGACAATGAATATCCATAAA
*
25303567 CAAATCAAATTCGGCAATGTATAACCATATACAAATCAAATTCGGCAATGTATATCTATATACAA
1 CAAATCAAATTCGGCAATGTATATCCATATACAAATCAAATTCGGCAATGTATATCTATATACAA
* * *
25303632 ATCAATTCGGCAATGTATATCTATAAA
66 ATCAATTCGACAATGAATATCCATAAA
* * * * * * *
25303659 CAGATTAAATTTGGCAATGTATATCTATAAACAAATCAAATTCGGTAATGTATATCTTTATACAA
1 CAAATCAAATTCGGCAATGTATATCCATATACAAATCAAATTCGGCAATGTATATCTATATACAA
25303724 ATCAATTC
66 ATCAATTC
25303732 AGTAATGTAT
Statistics
Matches: 148, Mismatches: 16, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
91 6 0.04
92 142 0.96
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.31
Consensus pattern (92 bp):
CAAATCAAATTCGGCAATGTATATCCATATACAAATCAAATTCGGCAATGTATATCTATATACAA
ATCAATTCGACAATGAATATCCATAAA
Found at i:25303739 original size:61 final size:61
Alignment explanation
Indices: 25303476--25303742 Score: 347
Period size: 61 Copynumber: 4.4 Consensus size: 61
25303466 ATCCAATGGT
* * *
25303476 CAAATCAATTCGGCAATATATATCCATATACGAATCAAATTCGGCAATATATATCTATATA
1 CAAATCAATTCGGCAATGTATATCCATATACAAATCAAATTCGGCAATGTATATCTATATA
* * * *
25303537 CAAATCAATTCGACAATGAATATCCATATACAAATCAAATTCGGCAATGTATAACCATATA
1 CAAATCAATTCGGCAATGTATATCCATATACAAATCAAATTCGGCAATGTATATCTATATA
* *
25303598 CAAATCAAATTCGGCAATGTATATCTATATACAAATC-AATTCGGCAATGTATATCTATAAA
1 CAAATC-AATTCGGCAATGTATATCCATATACAAATCAAATTCGGCAATGTATATCTATATA
* * * * * * *
25303659 CAGATTAAATTTGGCAATGTATATCTATAAACAAATCAAATTCGGTAATGTATATCTTTATA
1 CA-AATCAATTCGGCAATGTATATCCATATACAAATCAAATTCGGCAATGTATATCTATATA
* *
25303721 CAAATCAATTCAGTAATGTATA
1 CAAATCAATTCGGCAATGTATA
25303743 AAACATATAC
Statistics
Matches: 178, Mismatches: 25, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
61 126 0.71
62 52 0.29
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.31
Consensus pattern (61 bp):
CAAATCAATTCGGCAATGTATATCCATATACAAATCAAATTCGGCAATGTATATCTATATA
Found at i:25303759 original size:92 final size:90
Alignment explanation
Indices: 25303482--25303762 Score: 339
Period size: 92 Copynumber: 3.1 Consensus size: 90
25303472 TGGTCAAATC
* * *
25303482 AATTCGGCAATATATATCCATATACGAATCAAATTCGGCAATATATATCTATATACAAATCAATT
1 AATTCGGCAATGTATATCCATATACAAATCAAATTCGGCAATGTATATCTATATACAAATCAATT
* ** *
25303547 CGACAATGAATATCCATATACAAATCA
66 CG-CAATGTATAAACATATAC-AATTA
*
25303574 AATTCGGCAATGTATAACCATATACAAATCAAATTCGGCAATGTATATCTATATACAAATCAATT
1 AATTCGGCAATGTATATCCATATACAAATCAAATTCGGCAATGTATATCTATATACAAATCAATT
* *
25303639 CGGCAATGTAT-ATCTATAAACAGATTA
66 C-GCAATGTATAAAC-ATATACA-ATTA
* * * * *
25303666 AATTTGGCAATGTATATCTATAAACAAATCAAATTCGGTAATGTATATCTTTATACAAATCAATT
1 AATTCGGCAATGTATATCCATATACAAATCAAATTCGGCAATGTATATCTATATACAAATCAATT
* *
25303731 CAGTAATGTATAAAACATATACATTTA
66 C-GCAATGTAT-AAACATATACAATTA
25303758 AATTC
1 AATTC
25303763 AAAAACATTT
Statistics
Matches: 163, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
91 2 0.01
92 152 0.93
93 7 0.04
94 2 0.01
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (90 bp):
AATTCGGCAATGTATATCCATATACAAATCAAATTCGGCAATGTATATCTATATACAAATCAATT
CGCAATGTATAAACATATACAATTA
Found at i:25307192 original size:31 final size:31
Alignment explanation
Indices: 25307155--25307285 Score: 122
Period size: 31 Copynumber: 4.2 Consensus size: 31
25307145 ACACCCACAG
25307155 AGATAGTTCGTTGGGACAGTAAACACAAAAC
1 AGATAGTTCGTTGGGACAGTAAACACAAAAC
* * * * *
25307186 AAATAG-TC-TACTGGGACAATAAACATAGAAT
1 AGATAGTTCGT--TGGGACAGTAAACACAAAAC
* * ** *
25307217 AGATAGTTTGCTAAGATAGTAAACACAAAAC
1 AGATAGTTCGTTGGGACAGTAAACACAAAAC
* *
25307248 AGATAGTTTGTTGGGACAGTAAACACAGAAC
1 AGATAGTTCGTTGGGACAGTAAACACAAAAC
25307279 AGATAGT
1 AGATAGT
25307286 CCATCAAGAT
Statistics
Matches: 76, Mismatches: 20, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
29 1 0.01
30 2 0.03
31 72 0.95
32 1 0.01
ACGTcount: A:0.44, C:0.13, G:0.21, T:0.22
Consensus pattern (31 bp):
AGATAGTTCGTTGGGACAGTAAACACAAAAC
Found at i:25308117 original size:12 final size:12
Alignment explanation
Indices: 25308100--25308127 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
25308090 TTTAAATTTT
25308100 GTGTTTCATATC
1 GTGTTTCATATC
25308112 GTGTTTCATATC
1 GTGTTTCATATC
25308124 GTGT
1 GTGT
25308128 CTCCTGAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.14, G:0.21, T:0.50
Consensus pattern (12 bp):
GTGTTTCATATC
Found at i:25316628 original size:34 final size:34
Alignment explanation
Indices: 25316590--25316655 Score: 132
Period size: 34 Copynumber: 1.9 Consensus size: 34
25316580 ATGAGTAATG
25316590 TCGTGACAATTATATAATAATCCAAGAAACATTA
1 TCGTGACAATTATATAATAATCCAAGAAACATTA
25316624 TCGTGACAATTATATAATAATCCAAGAAACAT
1 TCGTGACAATTATATAATAATCCAAGAAACAT
25316656 ACTCATAATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.47, C:0.15, G:0.09, T:0.29
Consensus pattern (34 bp):
TCGTGACAATTATATAATAATCCAAGAAACATTA
Found at i:25317579 original size:62 final size:62
Alignment explanation
Indices: 25317458--25317588 Score: 151
Period size: 62 Copynumber: 2.1 Consensus size: 62
25317448 ACATAGATAG
* * *
25317458 TAAACACAGTACAAATAGTCTACTGGGACAATAACCACATAACAGATAGTTCACTAGGACAT
1 TAAACACAGTACAAATAGTCTACTGGGACAATAAACAAATAACAGATAGTTCACTAGGACAA
* * **
25317520 TAAACACA-TAACAAATGGTCTGCTGGGACTGTAAACAAATAACAGATAGTCTGC-C-AGGACAA
1 TAAACACAGT-ACAAATAGTCTACTGGGACAATAAACAAATAACAGATAGT-T-CACTAGGACAA
25317582 TAAACAC
1 TAAACAC
25317589 TGGGTGATCT
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
61 1 0.02
62 55 0.93
63 2 0.03
64 1 0.02
ACGTcount: A:0.44, C:0.21, G:0.16, T:0.20
Consensus pattern (62 bp):
TAAACACAGTACAAATAGTCTACTGGGACAATAAACAAATAACAGATAGTTCACTAGGACAA
Found at i:25317586 original size:31 final size:31
Alignment explanation
Indices: 25317483--25317588 Score: 99
Period size: 31 Copynumber: 3.4 Consensus size: 31
25317473 TAGTCTACTG
*
25317483 GGACAATAACCACATAACAGATAGT-T-CACTA
1 GGACAATAAACACATAACAGATAGTCTGC-C-A
* * * **
25317514 GGACATTAAACACATAACAAATGGTCTGCTG
1 GGACAATAAACACATAACAGATAGTCTGCCA
** *
25317545 GGACTGTAAACAAATAACAGATAGTCTGCCA
1 GGACAATAAACACATAACAGATAGTCTGCCA
25317576 GGACAATAAACAC
1 GGACAATAAACAC
25317589 TGGGTGATCT
Statistics
Matches: 57, Mismatches: 16, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
31 55 0.96
32 1 0.02
33 1 0.02
ACGTcount: A:0.43, C:0.21, G:0.17, T:0.19
Consensus pattern (31 bp):
GGACAATAAACACATAACAGATAGTCTGCCA
Found at i:25321899 original size:111 final size:111
Alignment explanation
Indices: 25321640--25321898 Score: 290
Period size: 111 Copynumber: 2.3 Consensus size: 111
25321630 TATTCACTTA
* * * ** * *
25321640 TCTTTCATGTTTTTACGAATTACGTAATCTCTTCGAAATCTTTTCACT-TTTGAAGTAACTATTT
1 TCTTTCATG-TTTTACGAATTACTTAATATTTTAAAAATATTTTTA-TGTTTGAAGTAACTATTT
* * ** * * *
25321704 CATACTCTAAGTAATTTTTTCATGTACTATAAATTGTTTTCTTGGAAT
64 CATACTCTAAGTAATTCTTTCATGTACCATAAATAATCTTCTTAGAAC
*
25321752 TTTTTCATGTTTTACGAATTACTTAATATTTTAAAAATATTTTTATGTTTGAAGTAACTATTTCA
1 TCTTTCATGTTTTACGAATTACTTAATATTTTAAAAATATTTTTATGTTTGAAGTAACTATTTCA
* * * *
25321817 TATTTTAAGTAATTCTTTCATTTACCGTAAACTAATCTT-TTAGAAC
66 TACTCTAAGTAATTCTTTCATGTACCATAAA-TAATCTTCTTAGAAC
*
25321863 TCTTTCATGTTTTATGAATTACTTAAT-TTTTAAAAA
1 TCTTTCATGTTTTACGAATTACTTAATATTTTAAAAA
25321899 AAAATTTATT
Statistics
Matches: 124, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
110 10 0.08
111 102 0.82
112 12 0.10
ACGTcount: A:0.30, C:0.12, G:0.08, T:0.49
Consensus pattern (111 bp):
TCTTTCATGTTTTACGAATTACTTAATATTTTAAAAATATTTTTATGTTTGAAGTAACTATTTCA
TACTCTAAGTAATTCTTTCATGTACCATAAATAATCTTCTTAGAAC
Found at i:25321912 original size:111 final size:111
Alignment explanation
Indices: 25321688--25321928 Score: 279
Period size: 111 Copynumber: 2.2 Consensus size: 111
25321678 TCTTTTCACT
* * ** * * *
25321688 TTTGAAGTAACTATTTCATACTCTAAGTAATTTTTTCATGTACTATAAATTGTTTTCTTGGAATT
1 TTTGAAGTAACTATTTCATACTCTAAGTAATTCTTTCATGTACCATAAATAATCTTCTTAGAACT
* * **
25321753 TTTTCATGTTTTACGAATTACTTAATATTTTAAAAATATTTTTATG
66 CTTTCATGTTTTACGAATTACTTAATATTTTAAAAAAAAATTTATG
* * * *
25321799 TTTGAAGTAACTATTTCATATTTTAAGTAATTCTTTCATTTACCGTAAACTAATCTT-TTAGAAC
1 TTTGAAGTAACTATTTCATACTCTAAGTAATTCTTTCATGTACCATAAA-TAATCTTCTTAGAAC
*
25321863 TCTTTCATGTTTTATGAATTACTTAAT-TTTTAAAAAAAAATTTATTG
65 TCTTTCATGTTTTACGAATTACTTAATATTTTAAAAAAAAATTTA-TG
* * *
25321910 TTTTAAGTAATTCTTTCAT
1 TTTGAAGTAACTATTTCAT
25321929 TTATTGTAAA
Statistics
Matches: 109, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
110 14 0.13
111 91 0.83
112 4 0.04
ACGTcount: A:0.32, C:0.10, G:0.08, T:0.50
Consensus pattern (111 bp):
TTTGAAGTAACTATTTCATACTCTAAGTAATTCTTTCATGTACCATAAATAATCTTCTTAGAACT
CTTTCATGTTTTACGAATTACTTAATATTTTAAAAAAAAATTTATG
Found at i:25322773 original size:11 final size:12
Alignment explanation
Indices: 25322757--25322785 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
25322747 CCTTACCCCC
25322757 TATTAT-ATAAA
1 TATTATCATAAA
25322768 TATTATCATAAA
1 TATTATCATAAA
25322780 TATTAT
1 TATTAT
25322786 TTTTTTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 6 0.35
12 11 0.65
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (12 bp):
TATTATCATAAA
Found at i:25328686 original size:17 final size:17
Alignment explanation
Indices: 25328664--25328696 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
25328654 GTCCAATCTA
25328664 GATATAA-AAGATAAAAT
1 GATATAATAA-ATAAAAT
25328681 GATATAATAAATAAAA
1 GATATAATAAATAAAA
25328697 ATTTATCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (17 bp):
GATATAATAAATAAAAT
Found at i:25334166 original size:16 final size:17
Alignment explanation
Indices: 25334140--25334171 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
25334130 ACCTCAAAAT
25334140 TAATATTTTAAAATATC
1 TAATATTTTAAAATATC
25334157 TAAT-TTTTAAAATAT
1 TAATATTTTAAAATAT
25334172 TCATTTTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (17 bp):
TAATATTTTAAAATATC
Found at i:25335294 original size:2 final size:2
Alignment explanation
Indices: 25335287--25335312 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
25335277 ATGGCACGTT
25335287 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
25335313 CAACACCACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:25337072 original size:18 final size:17
Alignment explanation
Indices: 25337049--25337089 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
25337039 TTTAATTAAA
25337049 AAATATAATTTTATATAT
1 AAATATAATTTTAT-TAT
* *
25337067 AAATATGATTTTATTTT
1 AAATATAATTTTATTAT
25337084 AAATAT
1 AAATAT
25337090 GATATTATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.51
Consensus pattern (17 bp):
AAATATAATTTTATTAT
Found at i:25337088 original size:17 final size:18
Alignment explanation
Indices: 25337049--25337097 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
25337039 TTTAATTAAA
*
25337049 AAATATAATTTTATATAT
1 AAATATGATTTTATATAT
*
25337067 AAATATGATTTTAT-TTT
1 AAATATGATTTTATATAT
*
25337084 AAATATGATATTAT
1 AAATATGATTTTAT
25337098 CAAGATATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 15 0.54
18 13 0.46
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (18 bp):
AAATATGATTTTATATAT
Found at i:25338479 original size:22 final size:22
Alignment explanation
Indices: 25338469--25338533 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
25338459 CAAAATAGAC
25338469 CAGATACAGATGCAGAACATAA
1 CAGATACAGATGCAGAACATAA
*
25338491 TAGATACAGATGCAGAACA-AA
1 CAGATACAGATGCAGAACATAA
* * *
25338512 TCATATACAAATGCAAAACATA
1 -CAGATACAGATGCAGAACATA
25338534 TTAGAATCAT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
21 2 0.06
22 33 0.92
23 1 0.03
ACGTcount: A:0.52, C:0.17, G:0.14, T:0.17
Consensus pattern (22 bp):
CAGATACAGATGCAGAACATAA
Found at i:25344032 original size:15 final size:16
Alignment explanation
Indices: 25343992--25344034 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
25343982 AAGATTAGAT
25343992 TAAAGATGATATCGAGA
1 TAAAGATGAT-TCGAGA
* *
25344009 TATAGATGATTTGA-A
1 TAAAGATGATTCGAGA
25344024 TAAAGATGATT
1 TAAAGATGATT
25344035 GGATAAGAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 11 0.48
16 3 0.13
17 9 0.39
ACGTcount: A:0.44, C:0.02, G:0.21, T:0.33
Consensus pattern (16 bp):
TAAAGATGATTCGAGA
Found at i:25349555 original size:21 final size:20
Alignment explanation
Indices: 25349526--25349564 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
25349516 AATATACCAT
*
25349526 ATTACAATCAATTCCAAAATA
1 ATTACAATC-ATGCCAAAATA
*
25349547 ATTATAATCATGCCAAAA
1 ATTACAATCATGCCAAAA
25349565 CATCATTTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.51, C:0.18, G:0.03, T:0.28
Consensus pattern (20 bp):
ATTACAATCATGCCAAAATA
Found at i:25351882 original size:18 final size:19
Alignment explanation
Indices: 25351859--25351901 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 19
25351849 AAAAAAAGTA
25351859 TTTTTT-TATTGTTCTTGTT
1 TTTTTTCTATT-TTCTTGTT
25351878 TTTTTTGCTATTTTCTTGTT
1 TTTTTT-CTATTTTCTTGTT
25351898 TTTT
1 TTTT
25351902 CCCATTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.27
20 12 0.55
21 4 0.18
ACGTcount: A:0.05, C:0.07, G:0.09, T:0.79
Consensus pattern (19 bp):
TTTTTTCTATTTTCTTGTT
Found at i:25360308 original size:30 final size:30
Alignment explanation
Indices: 25360268--25360452 Score: 121
Period size: 30 Copynumber: 6.2 Consensus size: 30
25360258 TCATCGACCA
25360268 ATGAAAAGGGATGGCTTCAGCTATCAAAAT
1 ATGAAAAGGGATGGCTTCAGCTATCAAAAT
* * * *
25360298 ATGGAAAGGGATAGCTTTAGCTATCAAATT
1 ATGAAAAGGGATGGCTTCAGCTATCAAAAT
* *
25360328 ATGAAAAGGGATGG--TGATGACCATCAACAA-
1 ATGAAAAGGGATGGCTTCA-G-CTATCAA-AAT
** * * * * *
25360358 A-GAAAAGGGAT-TATGACAACCATCGAATT
1 ATGAAAAGGGATGGCT-TCAGCTATCAAAAT
* *
25360387 ATGAAAAGGGATGGCTTCAGCTATCGAATT
1 ATGAAAAGGGATGGCTTCAGCTATCAAAAT
** *
25360417 ATGAAAAGGGATAACTTC-GTCTATCAAATT
1 ATGAAAAGGGATGGCTTCAG-CTATCAAAAT
25360447 ATGAAA
1 ATGAAA
25360453 TAGATGGTGA
Statistics
Matches: 122, Mismatches: 23, Indels: 20
0.74 0.14 0.12
Matches are distributed among these distances:
28 3 0.02
29 19 0.16
30 97 0.80
31 3 0.02
ACGTcount: A:0.41, C:0.12, G:0.23, T:0.24
Consensus pattern (30 bp):
ATGAAAAGGGATGGCTTCAGCTATCAAAAT
Found at i:25360487 original size:29 final size:30
Alignment explanation
Indices: 25360455--25360518 Score: 96
Period size: 29 Copynumber: 2.2 Consensus size: 30
25360445 TTATGAAATA
25360455 GATGGTGACGACCATC-AA-CAATGAAAACG
1 GATGGTGACGACCATCGAATC-ATGAAAACG
*
25360484 GATGGTGACGACCATCGAATCATGAAAATG
1 GATGGTGACGACCATCGAATCATGAAAACG
25360514 GATGG
1 GATGG
25360519 CTTCAACTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
29 16 0.50
30 15 0.47
31 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.28, T:0.17
Consensus pattern (30 bp):
GATGGTGACGACCATCGAATCATGAAAACG
Found at i:25360520 original size:118 final size:117
Alignment explanation
Indices: 25360268--25360573 Score: 391
Period size: 118 Copynumber: 2.6 Consensus size: 117
25360258 TCATCGACCA
* *
25360268 ATGAAAAGGGATGGCTTCAGCTATCAAAATATGGAAAGGGATAGCTTTAGCTATCAAATTATGAA
1 ATGAAAAGGGATGGCTTCAGCTATCAAAATATGAAAAGGGATAGC-TTCGCTATCAAATTATGAA
* * * *
25360333 AAGGGATGGTGATGACCATCAACAAAGAAAAGGGATTATGACAACCATCGAATT
65 AA-GGATGGTGACGACCATCAACAAAGAAAACGGATGATGACAACCATCGAATC
* * *
25360387 ATGAAAAGGGATGGCTTCAGCTATCGAATTATGAAAAGGGATAACTTCGTCTATCAAATTATGAA
1 ATGAAAAGGGATGGCTTCAGCTATCAAAATATGAAAAGGGATAGCTTCG-CTATCAAATTATGAA
* * *
25360452 ATA-GATGGTGACGACCATCAACAATGAAAACGGATGGTGACGACCATCGAATC
65 A-AGGATGGTGACGACCATCAACAAAGAAAACGGATGATGACAACCATCGAATC
* * * * *
25360505 ATGAAAATGGATGGCTTCAACTATCAAAATAT-AGAAAGGGATAGCTTCGGCTACCGAACTATGA
1 ATGAAAAGGGATGGCTTCAGCTATCAAAATATGA-AAAGGGATAGCTTC-GCTATCAAATTATGA
25360569 AAAGG
64 AAAGG
25360574 GGTGGTAACA
Statistics
Matches: 162, Mismatches: 20, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
117 2 0.01
118 101 0.62
119 58 0.36
120 1 0.01
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (117 bp):
ATGAAAAGGGATGGCTTCAGCTATCAAAATATGAAAAGGGATAGCTTCGCTATCAAATTATGAAA
AGGATGGTGACGACCATCAACAAAGAAAACGGATGATGACAACCATCGAATC
Found at i:25364596 original size:51 final size:48
Alignment explanation
Indices: 25364520--25364864 Score: 294
Period size: 51 Copynumber: 6.9 Consensus size: 48
25364510 TATCGATGAA
* * * *
25364520 CACATGTGTAGTATTGTGTCAAGGCTACTACGTGTATCGACAAATAATGGT
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGTACCGA-AAAT--TGGT
* * * *
25364571 CACATGTGTAGTACTAAGTGAAGGCTACAATGTGTACCGAGAAGCTTTGGT
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGTACCGA-AA--ATTGGT
* * *
25364622 CACATGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGTACCGA-AAAT--TGGT
* * ** *
25364673 CACATGTGTAGTACTAAGTGAATGCTACTATATGTACCGTAAAGCTTTGGT
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGTACCG-AAA--ATTGGT
* * * *
25364724 CACGTGTGTAATACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGTACCG-AAAA-TTGGT
* * * * *
25364774 CACGTGTGTATTACTATATGAAGGCTACTACGTGAACCGTAAAACTTGAT
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGTACCG-AAAA-TTGGT
** *
25364824 CATGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAA
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAA
25364865 TGATAAAAGT
Statistics
Matches: 245, Mismatches: 41, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
49 3 0.01
50 86 0.35
51 153 0.62
52 1 0.00
53 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (48 bp):
CACATGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAAAATTGGT
Found at i:25364700 original size:102 final size:102
Alignment explanation
Indices: 25364520--25364863 Score: 410
Period size: 102 Copynumber: 3.4 Consensus size: 102
25364510 TATCGATGAA
* * * * *
25364520 CACATGTGTAGTATTGTGTCAAGGCTACTACGTGTATCGACAAATAATGGTCACATGTGTAGTAC
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGTAGTAC
*
25364585 TAAGTGAAGGCTACAATGTGTACCG-AGAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTGTACCGTA-AAGCTTTGGT
* *
25364622 CACATGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGTAGTAC
* *
25364687 TAAGTGAATGCTACTATATGTACCGTAAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTGTACCGTAAAGCTTTGGT
* * * * * * *
25364724 CACGTGTGTAATACTATGTGAAGGCTACTACGTGAACCG-TAAA-ACTTGATCACGTGTGTATTA
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATA-ATGGTCACATGTGTAGTA
* * * *
25364787 CTATA-TGAAGGCTACTACGTGAACCGTAAAAC-TTGAT
65 CTA-AGTGAAGGCTACTATGTGTACCGTAAAGCTTTGGT
** *
25364824 CATGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGAATCGA
25364864 ATGATAAAAG
Statistics
Matches: 211, Mismatches: 27, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
100 39 0.18
101 43 0.20
102 128 0.61
103 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (102 bp):
CACATGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGTGTACCGTAAAGCTTTGGT
Found at i:25364796 original size:50 final size:50
Alignment explanation
Indices: 25364570--25364857 Score: 299
Period size: 51 Copynumber: 5.7 Consensus size: 50
25364560 CAAATAATGG
* * * * * * *
25364570 TCACATGTGTAGTACTAAGTGAAGGCTACAATGTGTACCG-AGAAGCTTTGG
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTA-AAAC-TTGA
* * * *** *
25364621 TCACATGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGG
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGA
* * * ** * * *
25364672 TCACATGTGTAGTACTAAGTGAATGCTACTATATGTACCGTAAAGCTTTGG
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAAC-TTGA
*
25364723 TCACGTGTGTAATACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGA
* *
25364773 TCACGTGTGTATTACTATATGAAGGCTACTACGTGAACCGTAAAACTTGA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGA
*
25364823 TCATGTGTGTAGTACTATGTGAAGGCTACTACGTG
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTG
25364858 TATCGAATGA
Statistics
Matches: 201, Mismatches: 33, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
50 87 0.43
51 111 0.55
52 2 0.01
53 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGA
Found at i:25371090 original size:11 final size:13
Alignment explanation
Indices: 25371076--25371108 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
25371066 ATTTCATGAA
25371076 AAAATTTCG-T-G
1 AAAATTTCGTTCG
25371087 AAAATTTCGTTCG
1 AAAATTTCGTTCG
25371100 AAAATTTCG
1 AAAATTTCG
25371109 ACGTTTGGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.45
12 1 0.05
13 10 0.50
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (13 bp):
AAAATTTCGTTCG
Found at i:25372352 original size:51 final size:50
Alignment explanation
Indices: 25372276--25372551 Score: 243
Period size: 51 Copynumber: 5.4 Consensus size: 50
25372266 TATCGATGAA
* * * *
25372276 CACATGTGTAGTATTGTGTCAAGGCTACTACGTGTATCGATAAATAATGGT
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAAT-ATGGT
* * * * * * *
25372327 CACATGTGTAGTACTAAGTGAAGGCTACAATGTGTACCAAGAAGCTTTGGT
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAA-ATATGGT
* * *
25372378 CACATGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAAT-ATGGT
* * * *
25372429 CACATGTGTAGTACGAAGTGAAGGCTACTATGTGTACCGA-AAAGCTTTGGT
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAA--TATGGT
* * * * *
25372480 CACGTGTGTAATACTATGTGAAGGCTACTATGTGAACCG-TAAA-ACTTGAT
1 CACATGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATA--TGGT
* *
25372530 CACGTGTGTAGTACTACGTGAA
1 CACATGTGTAGTACTATGTGAA
25372552 CCATAAAACT
Statistics
Matches: 181, Mismatches: 37, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
50 27 0.15
51 152 0.84
52 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.29
Consensus pattern (50 bp):
CACATGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATATGGT
Found at i:25372452 original size:102 final size:102
Alignment explanation
Indices: 25372276--25372515 Score: 374
Period size: 102 Copynumber: 2.4 Consensus size: 102
25372266 TATCGATGAA
* * *
25372276 CACATGTGTAGTATTGTGTCAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTAC
1 CACATGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGTAGTAC
*
25372341 TAAGTGAAGGCTACAATGTGTACC-AAGAAGCTTTGGT
66 GAAGTGAAGGCTACAATGTGTACCGAA-AAGCTTTGGT
*
25372378 CACATGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
1 CACATGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGTAGTAC
*
25372443 GAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGGT
66 GAAGTGAAGGCTACAATGTGTACCGAAAAGCTTTGGT
* * * *
25372480 CACGTGTGTAATACTATGTGAAGGCTACTATGTGAA
1 CACATGTGTAGTACTGTGTGAAGGCTACTACGTGAA
25372516 CCGTAAAACT
Statistics
Matches: 127, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
102 125 0.98
103 2 0.02
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (102 bp):
CACATGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGTAGTAC
GAAGTGAAGGCTACAATGTGTACCGAAAAGCTTTGGT
Found at i:25372552 original size:36 final size:36
Alignment explanation
Indices: 25372505--25372587 Score: 148
Period size: 36 Copynumber: 2.3 Consensus size: 36
25372495 ATGTGAAGGC
*
25372505 TACTATGTGAACCGTAAAACTTGATCACGTGTGTAG
1 TACTATGTGAACCATAAAACTTGATCACGTGTGTAG
*
25372541 TACTACGTGAACCATAAAACTTGATCACGTGTGTAG
1 TACTATGTGAACCATAAAACTTGATCACGTGTGTAG
25372577 TACTATGTGAA
1 TACTATGTGAA
25372588 GGCTACTACG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 44 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (36 bp):
TACTATGTGAACCATAAAACTTGATCACGTGTGTAG
Found at i:25377026 original size:51 final size:50
Alignment explanation
Indices: 25376905--25377092 Score: 243
Period size: 51 Copynumber: 3.7 Consensus size: 50
25376895 TATCATTCGA
* * *
25376905 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAACTTTCCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACCTTCCGG
*
25376955 TTCACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAAGCCTTCCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAA-CCTTCCGG
* * * * * *
25377006 TACACATAGTAGCCTACACATAGTACTACACATGTGACCATTATCTAT-CGA
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA-AACCT-TCCGG
*
25377057 TACACGTAGTAGCCTGCACTTAGTACTACACACGTG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTG
25377093 TTTAGAGGCA
Statistics
Matches: 120, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
50 39 0.32
51 79 0.66
52 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.25
Consensus pattern (50 bp):
TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACCTTCCGG
Found at i:25377036 original size:12 final size:13
Alignment explanation
Indices: 25377006--25377038 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
25376996 AGCCTTCCGG
25377006 TACACATAGTAGCC
1 TACACATAGTA-CC
25377020 TACACATAGTA-C
1 TACACATAGTACC
25377032 TACACAT
1 TACACAT
25377039 GTGACCATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.42
14 11 0.58
ACGTcount: A:0.39, C:0.27, G:0.09, T:0.24
Consensus pattern (13 bp):
TACACATAGTACC
Found at i:25386567 original size:61 final size:61
Alignment explanation
Indices: 25386493--25386733 Score: 275
Period size: 61 Copynumber: 3.9 Consensus size: 61
25386483 TTACCCTTCT
* * *
25386493 AGAGTTTTTCCACAAAGGCGGTCCTTTACATTCAGTACTCGCAACAAAGGCTTTCATGTCT
1 AGAGTTTTTCCACAAAGGCGTTCCTTTACATTCAGTACTCGCAACAAAGGCTTTCATATCC
* * * * * * *
25386554 AGAGTTTTGCCACATAGGCGTTTCTTTACATTCACTACTCGCCACAAAGCCTTTCCTATCC
1 AGAGTTTTTCCACAAAGGCGTTCCTTTACATTCAGTACTCGCAACAAAGGCTTTCATATCC
* * ** *
25386615 AGAGTTTTACCACAAAGGTGTTCCTTTACATTCAGTACTCGCCTCAAAGGCTTTCCTATCC
1 AGAGTTTTTCCACAAAGGCGTTCCTTTACATTCAGTACTCGCAACAAAGGCTTTCATATCC
* * * * * * *
25386676 AGATTTTTTCCATAAAGGTGTTCCTTTACATTCAATACTCACCAAAAAAGGCGTTCAT
1 AGAGTTTTTCCACAAAGGCGTTCCTTTACATTCAGTACTC-GCAACAAAGGCTTTCAT
25386734 TTACGTTCAA
Statistics
Matches: 152, Mismatches: 27, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
61 141 0.93
62 11 0.07
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.33
Consensus pattern (61 bp):
AGAGTTTTTCCACAAAGGCGTTCCTTTACATTCAGTACTCGCAACAAAGGCTTTCATATCC
Done.