Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 ID=Chr13-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58321163
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 747533 characters in sequence are not A, C, G, or T
File 85 of 199
Found at i:25802610 original size:20 final size:20
Alignment explanation
Indices: 25802587--25802640 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
25802577 AGTTTTTCCC
*
25802587 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
25802607 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
25802627 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
25802641 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:25802622 original size:30 final size:30
Alignment explanation
Indices: 25802587--25802660 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
25802577 AGTTTTTCCC
25802587 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
25802617 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
25802647 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
25802661 TGACTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:25802650 original size:20 final size:20
Alignment explanation
Indices: 25802587--25802651 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
25802577 AGTTTTTCCC
* * * *
25802587 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
25802607 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
25802626 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
25802647 AGCTC
1 AGCTC
25802652 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:25808469 original size:17 final size:17
Alignment explanation
Indices: 25808416--25808470 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
25808406 AACTAGAATA
25808416 AAATTTAATGCATGTAT
1 AAATTTAATGCATGTAT
** * *
25808433 AAA-TT-CGGC-TGGAC
1 AAATTTAATGCATGTAT
25808447 AAATTTAATGCATGTAT
1 AAATTTAATGCATGTAT
25808464 AAATTTA
1 AAATTTA
25808471 GACAAACTAA
Statistics
Matches: 27, Mismatches: 8, Indels: 6
0.66 0.20 0.15
Matches are distributed among these distances:
14 6 0.22
15 4 0.15
16 4 0.15
17 13 0.48
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (17 bp):
AAATTTAATGCATGTAT
Found at i:25819479 original size:39 final size:39
Alignment explanation
Indices: 25819423--25819500 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
25819413 AAGGTTTGCA
*
25819423 AAGTGTTTTGAGAATAGGATAGGTGATGGTTCGGCTAAG
1 AAGTGTTTTGAGAATAGGATAGGTGATGGCTCGGCTAAG
* *
25819462 AAGTGTTTT-AGGGATAGGATTGGTGATGGCTCGGCTAAG
1 AAGTGTTTTGA-GAATAGGATAGGTGATGGCTCGGCTAAG
25819501 GATAGAAACA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
38 1 0.03
39 34 0.97
ACGTcount: A:0.26, C:0.06, G:0.37, T:0.31
Consensus pattern (39 bp):
AAGTGTTTTGAGAATAGGATAGGTGATGGCTCGGCTAAG
Found at i:25823969 original size:18 final size:18
Alignment explanation
Indices: 25823948--25823982 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
25823938 TAAAAAATTA
25823948 TAAAAAACATAAAAAACG
1 TAAAAAACATAAAAAACG
* *
25823966 TAAAAAAGATGAAAAAC
1 TAAAAAACATAAAAAAC
25823983 AAAAAGAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.71, C:0.09, G:0.09, T:0.11
Consensus pattern (18 bp):
TAAAAAACATAAAAAACG
Found at i:25844938 original size:19 final size:21
Alignment explanation
Indices: 25844905--25844953 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
25844895 TGCAAAATGA
*
25844905 AGCTTAATCTCAGCTC-GTT-T
1 AGCTCAAT-TCAGCTCAGTTCT
*
25844925 AGCTCAATTCAGCTCATTTCT
1 AGCTCAATTCAGCTCAGTTCT
25844946 AGCTCAAT
1 AGCTCAAT
25844954 AAGCTTGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 7 0.28
20 9 0.36
21 9 0.36
ACGTcount: A:0.24, C:0.27, G:0.12, T:0.37
Consensus pattern (21 bp):
AGCTCAATTCAGCTCAGTTCT
Found at i:25848349 original size:14 final size:14
Alignment explanation
Indices: 25848321--25848349 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
25848311 GCTTAGTGGC
25848321 TTTTGACTTGATTT
1 TTTTGACTTGATTT
25848335 TTTTG-CTTGATTT
1 TTTTGACTTGATTT
25848348 TT
1 TT
25848350 AATCAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.10, C:0.07, G:0.14, T:0.69
Consensus pattern (14 bp):
TTTTGACTTGATTT
Found at i:25852615 original size:134 final size:135
Alignment explanation
Indices: 25852374--25852619 Score: 316
Period size: 134 Copynumber: 1.8 Consensus size: 135
25852364 AGCTGTAAAA
* * * * * ** *
25852374 TGGGTCTGCTCACACAAGCTGACGGTCGGAGTGTAAACTACATGATGCTGCTCACACAAGCTGAT
1 TGGGTCTGCTCACACAAGCCGACGGTCGAAATATAAACTACACGATGCCACTCACACAAGCTGAC
* * * * *
25852439 GAGTATCTGCAGCTAATGGAAGACCTCAGCCATCGGGAGGACATTCATGACCAGCACCCACATGG
66 GAGTATCTGCAACAAATGGAAGAACTCAACCATCGGAAGGACATTCATGACCAGCACCCACATGG
25852504 TAACC
131 TAACC
* *
25852509 TGGGTCTGCTCACACAAGCCGGCGGTCGAAATAT-AGCTACACGATGCCACTCACACAAGCTGAC
1 TGGGTCTGCTCACACAAGCCGACGGTCGAAATATAAACTACACGATGCCACTCACACAAGCTGAC
* *
25852573 GAGTATCTGCAACAAATGTTAA-AACTCAACCATTGGAAGGACATTCA
66 GAGTATCTGCAACAAATG-GAAGAACTCAACCATCGGAAGGACATTCA
25852620 GGGCTAGCAC
Statistics
Matches: 93, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
134 62 0.67
135 31 0.33
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.20
Consensus pattern (135 bp):
TGGGTCTGCTCACACAAGCCGACGGTCGAAATATAAACTACACGATGCCACTCACACAAGCTGAC
GAGTATCTGCAACAAATGGAAGAACTCAACCATCGGAAGGACATTCATGACCAGCACCCACATGG
TAACC
Found at i:25855235 original size:21 final size:23
Alignment explanation
Indices: 25855206--25855249 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
25855196 CAATTAGGAA
25855206 TTATATCTA-T-AATAGATATAT
1 TTATATCTAGTCAATAGATATAT
* *
25855227 TTATCTCTAGTCAATATATATAT
1 TTATATCTAGTCAATAGATATAT
25855250 CCTTATAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 8 0.42
22 1 0.05
23 10 0.53
ACGTcount: A:0.39, C:0.09, G:0.05, T:0.48
Consensus pattern (23 bp):
TTATATCTAGTCAATAGATATAT
Found at i:25858968 original size:137 final size:138
Alignment explanation
Indices: 25858720--25858986 Score: 338
Period size: 137 Copynumber: 1.9 Consensus size: 138
25858710 AATGGGCCTA
* * * * *
25858720 CTCACACAAGCTGAAGGTCAGAGTGTAAGCTACACGATGCTACTCACACAAGCTGATAAGTATCT
1 CTCACACAAGCTGAAGGTCAGAATGTAAGCAACACAATGCCACTCACACAAGCTGACAAGTATCT
* * * * *
25858785 GCAACTAATGCCGGACCTCAGCCATCAGTAGGACATTCAGGACCAGCACCCGAAACATGGTAACC
66 GCAACAAATGCCAGAACTCAACCATCAGTAAGACATTCAGGACCAGCACCCGAAACATGGTAACC
25858850 TAGGTCTG
131 TAGGTCTG
* * * * *
25858858 CTCACACAAGCTGACGGTCAGAATGT-GGCAACACAATGCCGCTCACACAAGCTGACGAGTATTT
1 CTCACACAAGCTGAAGGTCAGAATGTAAGCAACACAATGCCACTCACACAAGCTGACAAGTATCT
* ** * * *
25858922 GCAACAAATGTCAGAACTCAACCATTGGTAAGACATTTAGGGCCAGCACCTGAAACATGGTAACC
66 GCAACAAATGCCAGAACTCAACCATCAGTAAGACATTCAGGACCAGCACCCGAAACATGGTAACC
25858987 CTAATGACAT
Statistics
Matches: 108, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
137 84 0.78
138 24 0.22
ACGTcount: A:0.33, C:0.27, G:0.21, T:0.19
Consensus pattern (138 bp):
CTCACACAAGCTGAAGGTCAGAATGTAAGCAACACAATGCCACTCACACAAGCTGACAAGTATCT
GCAACAAATGCCAGAACTCAACCATCAGTAAGACATTCAGGACCAGCACCCGAAACATGGTAACC
TAGGTCTG
Found at i:25874401 original size:18 final size:19
Alignment explanation
Indices: 25874363--25874412 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
25874353 ATTTACAAAC
*
25874363 AAATTCAAAATAATTTTTA
1 AAATTCAAAATAATTTATA
*
25874382 AAATTTAAAAT-ATTTATAA
1 AAATTCAAAATAATTTAT-A
25874401 AAATCTCAAAAT
1 AAAT-TCAAAAT
25874413 TTATATTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
18 5 0.19
19 15 0.58
20 6 0.23
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (19 bp):
AAATTCAAAATAATTTATA
Found at i:25874458 original size:46 final size:44
Alignment explanation
Indices: 25874376--25874464 Score: 110
Period size: 46 Copynumber: 2.0 Consensus size: 44
25874366 TTCAAAATAA
*
25874376 TTTTTAAAATTTAAAATATTTATAAAAATCTCAAAATTTATATT
1 TTTTTAAAATTTAAAATATTTATAAAAATCTCAAAATATATATT
*
25874420 TTTTTAAAAATTATAAAATTTTTA-AAAAAGT-TCTAAAATATATAT
1 TTTTT-AAAATT-TAAAATATTTATAAAAA-TCTC-AAAATATATAT
25874465 AAAGAAAATG
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
44 5 0.13
45 13 0.33
46 21 0.54
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.46
Consensus pattern (44 bp):
TTTTTAAAATTTAAAATATTTATAAAAATCTCAAAATATATATT
Found at i:25874694 original size:14 final size:14
Alignment explanation
Indices: 25874675--25874701 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
25874665 TTTAATTTTT
25874675 TAATTTAACTCGAA
1 TAATTTAACTCGAA
25874689 TAATTTAACTCGA
1 TAATTTAACTCGA
25874702 TTCAACTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (14 bp):
TAATTTAACTCGAA
Found at i:25878237 original size:62 final size:62
Alignment explanation
Indices: 25878140--25878265 Score: 252
Period size: 62 Copynumber: 2.0 Consensus size: 62
25878130 AGGACCCCCC
25878140 CTTGAGAACCGTATATGAGAACTTCATCTCGTACAGCTCAAACAAAAACACCCAAGTAATAG
1 CTTGAGAACCGTATATGAGAACTTCATCTCGTACAGCTCAAACAAAAACACCCAAGTAATAG
25878202 CTTGAGAACCGTATATGAGAACTTCATCTCGTACAGCTCAAACAAAAACACCCAAGTAATAG
1 CTTGAGAACCGTATATGAGAACTTCATCTCGTACAGCTCAAACAAAAACACCCAAGTAATAG
25878264 CT
1 CT
25878266 GAAATGGATA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 64 1.00
ACGTcount: A:0.40, C:0.25, G:0.14, T:0.21
Consensus pattern (62 bp):
CTTGAGAACCGTATATGAGAACTTCATCTCGTACAGCTCAAACAAAAACACCCAAGTAATAG
Found at i:25886390 original size:30 final size:30
Alignment explanation
Indices: 25886340--25886398 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
25886330 TTCGAGATTT
25886340 GGGGAAAAAGTGTAAATATGCAAAAGTTTA
1 GGGGAAAAAGTGTAAATATGCAAAAGTTTA
* * * *
25886370 GGGGCAAAATTGTAATTATGCCAAAGTTT
1 GGGGAAAAAGTGTAAATATGCAAAAGTTT
25886399 GAGTCAAGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.07, G:0.25, T:0.27
Consensus pattern (30 bp):
GGGGAAAAAGTGTAAATATGCAAAAGTTTA
Found at i:25886846 original size:50 final size:50
Alignment explanation
Indices: 25886740--25886932 Score: 188
Period size: 50 Copynumber: 3.7 Consensus size: 50
25886730 GGGAATGAGA
*
25886740 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGGTTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTA---A-G--ATGAGAGG
** *
25886796 TCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCAAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTAAGATGAGAGG
* * * * * * **
25886846 TCCCCTGTAAGATCATGTCTAGGACATGGCATGGGCACTGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTAAGATGAGAGG
* * * *
25886896 TCCCATGTAAGACCATATTTGGGATATGACATTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
25886933 GTACAAGAAA
Statistics
Matches: 114, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
50 76 0.67
52 1 0.01
53 1 0.01
56 36 0.32
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTAAGATGAGAGG
Found at i:25887208 original size:20 final size:20
Alignment explanation
Indices: 25887183--25887221 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
25887173 TGAGTTATTT
25887183 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
25887203 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
25887222 GAAGAAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:25887230 original size:20 final size:20
Alignment explanation
Indices: 25887192--25887230 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
25887182 TAAGTAAGCA
*
25887192 AGTAAGTAAACAAGTAAGAG
1 AGTAAGTAAACAAGAAAGAG
*
25887212 AGTAAGTAAAGAAGAAAGA
1 AGTAAGTAAACAAGAAAGA
25887231 AAGATCATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.59, C:0.03, G:0.26, T:0.13
Consensus pattern (20 bp):
AGTAAGTAAACAAGAAAGAG
Found at i:25889079 original size:87 final size:87
Alignment explanation
Indices: 25888973--25889236 Score: 339
Period size: 87 Copynumber: 3.0 Consensus size: 87
25888963 TAGTGCATTT
* ** * * *
25888973 ATATTTGATGGTCGTCACCATCCCCTTTCATAACCAATAGTCAAAACTATCCCTTTTCATAATTG
1 ATATTTGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGAAACTATCCCTTTTCATATTTG
*** *
25889038 ATAGTCAAAACTATCCCTTTTC
66 ATAGTCGTCACCATCCCTTTTC
* * * * * ** *
25889060 ATATTTAATGATCGTCACCATCCCTTTTCATAGTTGATGGTTGTCACCATCCCTTTTCATATTTG
1 ATATTTGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGAAACTATCCCTTTTCATATTTG
* *
25889125 ATGGTCGTCACCATCCCTATTC
66 ATAGTCGTCACCATCCCTTTTC
*
25889147 ATATTTGATGGTCGTTACCATCCCTTTTCATAGTCGATAGTCGAAACTATCCCTTTTCATATTTG
1 ATATTTGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGAAACTATCCCTTTTCATATTTG
25889212 ATAGTCGTCACCATCCCTTTTC
66 ATAGTCGTCACCATCCCTTTTC
25889234 ATA
1 ATA
25889237 GTCGATAGTC
Statistics
Matches: 146, Mismatches: 31, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
87 146 1.00
ACGTcount: A:0.25, C:0.26, G:0.11, T:0.39
Consensus pattern (87 bp):
ATATTTGATGGTCGTCACCATCCCTTTTCATAGTCGATAGTCGAAACTATCCCTTTTCATATTTG
ATAGTCGTCACCATCCCTTTTC
Found at i:25889243 original size:29 final size:29
Alignment explanation
Indices: 25888973--25889247 Score: 264
Period size: 29 Copynumber: 9.5 Consensus size: 29
25888963 TAGTGCATTT
* *
25888973 ATATTTGATGGTCGTCACCATCCCCTTTC
1 ATATTTGATAGTCGTCACCATCCCTTTTC
**** *** *
25889002 ATAACCAATAGTCAAAACTATCCCTTTTC
1 ATATTTGATAGTCGTCACCATCCCTTTTC
* *** *
25889031 ATAATTGATAGTCAAAACTATCCCTTTTC
1 ATATTTGATAGTCGTCACCATCCCTTTTC
*
25889060 ATATTTAAT-GATCGTCACCATCCCTTTTC
1 ATATTTGATAG-TCGTCACCATCCCTTTTC
* * *
25889089 ATAGTTGATGGTTGTCACCATCCCTTTTC
1 ATATTTGATAGTCGTCACCATCCCTTTTC
* *
25889118 ATATTTGATGGTCGTCACCATCCCTATTC
1 ATATTTGATAGTCGTCACCATCCCTTTTC
* *
25889147 ATATTTGATGGTCGTTACCATCCCTTTTC
1 ATATTTGATAGTCGTCACCATCCCTTTTC
* * ** *
25889176 ATAGTCGATAGTCGAAACTATCCCTTTTC
1 ATATTTGATAGTCGTCACCATCCCTTTTC
25889205 ATATTTGATAGTCGTCACCATCCCTTTTC
1 ATATTTGATAGTCGTCACCATCCCTTTTC
* *
25889234 ATAGTCGATAGTCG
1 ATATTTGATAGTCG
25889248 ATAGTCGAAA
Statistics
Matches: 204, Mismatches: 40, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
28 1 0.00
29 202 0.99
30 1 0.00
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.38
Consensus pattern (29 bp):
ATATTTGATAGTCGTCACCATCCCTTTTC
Found at i:25890819 original size:17 final size:17
Alignment explanation
Indices: 25890797--25890829 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
25890787 CAATTTATTT
25890797 TTACATATAACATCATG
1 TTACATATAACATCATG
*
25890814 TTACATATAAGATCAT
1 TTACATATAACATCAT
25890830 CCATAAGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.15, G:0.06, T:0.36
Consensus pattern (17 bp):
TTACATATAACATCATG
Found at i:25892940 original size:27 final size:27
Alignment explanation
Indices: 25892909--25893194 Score: 216
Period size: 27 Copynumber: 10.6 Consensus size: 27
25892899 CCCAATATTT
* * *
25892909 GTAAAATGACCATAATGCCCCTGTAAG
1 GTAAAATGACCGTAATACCCCTATAAG
* * * *
25892936 GTAAAATGATCGTAATACCCTTGTAGG
1 GTAAAATGACCGTAATACCCCTATAAG
* ** * *
25892963 GTAAAATGATCAAAAAACCTCC-ATAGG
1 GTAAAATGACCGTAATACC-CCTATAAG
* * * *
25892990 GTAAAATGATCGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTATAAG
* **
25893017 GTAAAATGATCGTAATGGCCCTATAAG
1 GTAAAATGACCGTAATACCCCTATAAG
*
25893044 GGAAAATGACCGTAATACCCCTAT-AG
1 GTAAAATGACCGTAATACCCCTATAAG
** * * *
25893070 GATAAAATGACCAAAAAACCCCCATAGG
1 G-TAAAATGACCGTAATACCCCTATAAG
* *
25893098 GTAAAATGACCGTAATGCCCCTGTAAG
1 GTAAAATGACCGTAATACCCCTATAAG
* * *
25893125 GTAAAATGACCATAATACCCCCATAGG
1 GTAAAATGACCGTAATACCCCTATAAG
* ** * *
25893152 GTTAAATGACCAAAATACCCGTGTAAG
1 GTAAAATGACCGTAATACCCCTATAAG
*
25893179 GTAAAATGATCGTAAT
1 GTAAAATGACCGTAAT
25893195 GCCTCTGGTG
Statistics
Matches: 205, Mismatches: 50, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
26 5 0.02
27 197 0.96
28 3 0.01
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTATAAG
Found at i:25892993 original size:54 final size:54
Alignment explanation
Indices: 25892935--25893189 Score: 278
Period size: 54 Copynumber: 4.7 Consensus size: 54
25892925 GCCCCTGTAA
* * *
25892935 GGTAAAATGATCGTAATACCCTTGTAGGGTAAAATGATCAAAAAACCTCCATAG
1 GGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGATCAAAAAACCCCCATAG
* * ** *** *
25892989 GGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATGATCGTAATGGCCCTATAAG
1 GGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGATCAAAAAACCCCCAT-AG
* * *
25893044 GG-AAAATGACCGTAATACCCCTATAGGATAAAATGACCAAAAAACCCCCATAG
1 GGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGATCAAAAAACCCCCATAG
* * * * *
25893097 GGTAAAATGACCGTAATGCCCCTGTAAGGTAAAATGACCATAATACCCCCATAG
1 GGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGATCAAAAAACCCCCATAG
* ** * *
25893151 GGTTAAATGACCAAAATACCCGTGTAAGGTAAAATGATC
1 GGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGATC
25893190 GTAATGCCTC
Statistics
Matches: 167, Mismatches: 32, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
53 4 0.02
54 159 0.95
55 4 0.02
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.22
Consensus pattern (54 bp):
GGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGATCAAAAAACCCCCATAG
Found at i:25893196 original size:81 final size:81
Alignment explanation
Indices: 25892909--25893197 Score: 335
Period size: 81 Copynumber: 3.6 Consensus size: 81
25892899 CCCAATATTT
* * * * * *
25892909 GTAAAATGACCATAATGCCCCTGTAAGGTAAAATGATCGTAATACCCTTGTAGGGTAAAATGATC
1 GTAAAATGACCAAAATACCCCTGTAAGGTAAAATGATCGTAATGCCCCTGTAAGGTAAAATGACC
* * *
25892974 AAAAAACCTCCATAGG
66 ATAATACCCCCATAGG
* ** * * * * *
25892990 GTAAAATGATCGTAATGCCCCTGTAGGGTAAAATGATCGTAATGGCCCTATAAGGGAAAATGACC
1 GTAAAATGACCAAAATACCCCTGTAAGGTAAAATGATCGTAATGCCCCTGTAAGGTAAAATGACC
* *
25893055 GTAATACCCCTATAGG
66 ATAATACCCCCATAGG
* * ** * *
25893071 ATAAAATGACCAAAAAACCCCCATAGGGTAAAATGACCGTAATGCCCCTGTAAGGTAAAATGACC
1 GTAAAATGACCAAAATACCCCTGTAAGGTAAAATGATCGTAATGCCCCTGTAAGGTAAAATGACC
25893136 ATAATACCCCCATAGG
66 ATAATACCCCCATAGG
* *
25893152 GTTAAATGACCAAAATACCCGTGTAAGGTAAAATGATCGTAATGCC
1 GTAAAATGACCAAAATACCCCTGTAAGGTAAAATGATCGTAATGCC
25893198 TCTGGTGGGT
Statistics
Matches: 171, Mismatches: 37, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
81 171 1.00
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (81 bp):
GTAAAATGACCAAAATACCCCTGTAAGGTAAAATGATCGTAATGCCCCTGTAAGGTAAAATGACC
ATAATACCCCCATAGG
Found at i:25893263 original size:24 final size:24
Alignment explanation
Indices: 25893231--25893341 Score: 100
Period size: 24 Copynumber: 4.6 Consensus size: 24
25893221 TCCCCTCGAG
*
25893231 TGTAAATGATTGATTTGTCCGTGA
1 TGTAAATGACTGATTTGTCCGTGA
* *
25893255 TGTAGATGACTGATTTGTCTGTGA
1 TGTAAATGACTGATTTGTCCGTGA
* * *
25893279 TTTAAATGACTGATTTGTCTGTTA
1 TGTAAATGACTGATTTGTCCGTGA
*
25893303 CTGGT--ATGACTGATTTGTCTGTGA
1 -T-GTAAATGACTGATTTGTCCGTGA
* **
25893327 TTTGTATGACTGATT
1 TGTAAATGACTGATT
25893342 CTGAGAATGG
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
22 1 0.01
23 1 0.01
24 70 0.95
25 1 0.01
26 1 0.01
ACGTcount: A:0.22, C:0.09, G:0.24, T:0.45
Consensus pattern (24 bp):
TGTAAATGACTGATTTGTCCGTGA
Found at i:25893287 original size:48 final size:48
Alignment explanation
Indices: 25893233--25893341 Score: 141
Period size: 48 Copynumber: 2.3 Consensus size: 48
25893223 CCCTCGAGTG
*
25893233 TAAATGATTGATTTGTCCGTGA-T-GTAGATGACTGATTTGTCTGTGATT
1 TAAATGACTGATTTGTCCGTGACTGGT--ATGACTGATTTGTCTGTGATT
* *
25893281 TAAATGACTGATTTGTCTGTTACTGGTATGACTGATTTGTCTGTGATT
1 TAAATGACTGATTTGTCCGTGACTGGTATGACTGATTTGTCTGTGATT
**
25893329 TGTATGACTGATT
1 TAAATGACTGATT
25893342 CTGAGAATGG
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
48 51 0.94
49 1 0.02
50 2 0.04
ACGTcount: A:0.22, C:0.09, G:0.24, T:0.45
Consensus pattern (48 bp):
TAAATGACTGATTTGTCCGTGACTGGTATGACTGATTTGTCTGTGATT
Found at i:25893487 original size:26 final size:26
Alignment explanation
Indices: 25893457--25893510 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
25893447 TTGGCCACAT
*
25893457 ATACTATTACTGGCAACTTTGTTGCG
1 ATACTATTACTGGCAACTTTGCTGCG
* *
25893483 ATACTATTGCTGGCAGCTTTGCTGCG
1 ATACTATTACTGGCAACTTTGCTGCG
25893509 AT
1 AT
25893511 GCTACTGATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37
Consensus pattern (26 bp):
ATACTATTACTGGCAACTTTGCTGCG
Found at i:25893522 original size:26 final size:26
Alignment explanation
Indices: 25893467--25893522 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
25893457 ATACTATTAC
* * *
25893467 TGGCAACTTTGTTGCGATACTATTGC
1 TGGCAACTTTGCTGCGATACTACTGA
* *
25893493 TGGCAGCTTTGCTGCGATGCTACTGA
1 TGGCAACTTTGCTGCGATACTACTGA
25893519 TGGC
1 TGGC
25893523 TTTGTGCCGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.16, C:0.21, G:0.29, T:0.34
Consensus pattern (26 bp):
TGGCAACTTTGCTGCGATACTACTGA
Found at i:25893561 original size:32 final size:32
Alignment explanation
Indices: 25893512--25893619 Score: 112
Period size: 32 Copynumber: 3.4 Consensus size: 32
25893502 TGCTGCGATG
25893512 CTACTGATGGCTTTGTGCCGATCATATTACTA
1 CTACTGATGGCTTTGTGCCGATCATATTACTA
* * * * * *
25893544 TTACTGAGGGCTGTGTGCCGGTCATATCACTG
1 CTACTGATGGCTTTGTGCCGATCATATTACTA
*
25893576 CTACTGATGGCTTTATGCC-ACTCATATTACT-
1 CTACTGATGGCTTTGTGCCGA-TCATATTACTA
* *
25893607 GTACTTATGGCTT
1 CTACTGATGGCTT
25893620 GTAGCTATTC
Statistics
Matches: 61, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
31 11 0.18
32 50 0.82
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.37
Consensus pattern (32 bp):
CTACTGATGGCTTTGTGCCGATCATATTACTA
Found at i:25893641 original size:22 final size:22
Alignment explanation
Indices: 25893611--25893657 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
25893601 ATTACTGTAC
* * *
25893611 TTATGGCTTGTAGCTATTCTGT
1 TTATAGCTTATAGCTATCCTGT
25893633 TTATAGCTTATAGCTATCCTGT
1 TTATAGCTTATAGCTATCCTGT
25893655 TTA
1 TTA
25893658 CGGCTCTTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.19, C:0.15, G:0.17, T:0.49
Consensus pattern (22 bp):
TTATAGCTTATAGCTATCCTGT
Found at i:25894818 original size:20 final size:20
Alignment explanation
Indices: 25894798--25894936 Score: 93
Period size: 20 Copynumber: 7.0 Consensus size: 20
25894788 GAAGTATAAC
*
25894798 CAGGGGCACAGAAGTGCAAC
1 CAGGGGCACAGAAGTGCAAA
**
25894818 CAGGGTTATCA-AAGTGCAAA
1 CAGGGGCA-CAGAAGTGCAAA
* *
25894838 CAGGGGCACATAAGTGCAAT
1 CAGGGGCACAGAAGTGCAAA
* * * *
25894858 CAGGAGTACCGAAGTACAAA
1 CAGGGGCACAGAAGTGCAAA
* *
25894878 TAGGGGCAC-GTAAGTGCAAT
1 CAGGGGCACAG-AAGTGCAAA
* * * *
25894898 CAGGGGTACCGCAGTACAAA
1 CAGGGGCACAGAAGTGCAAA
* *
25894918 TAGGGGCACATAAGTGCAA
1 CAGGGGCACAGAAGTGCAA
25894937 TTAGAGGTAT
Statistics
Matches: 87, Mismatches: 28, Indels: 8
0.71 0.23 0.07
Matches are distributed among these distances:
19 3 0.03
20 81 0.93
21 3 0.03
ACGTcount: A:0.37, C:0.19, G:0.30, T:0.14
Consensus pattern (20 bp):
CAGGGGCACAGAAGTGCAAA
Found at i:25894853 original size:40 final size:39
Alignment explanation
Indices: 25894784--25894979 Score: 212
Period size: 40 Copynumber: 4.9 Consensus size: 39
25894774 GATTTAGAGT
* * * *
25894784 TACCGAAGTATAACCAGGGGCACAGAAGTGCAACCAGGG
1 TACCGAAGTACAAACAGGGGCACATAAGTGCAATCAGGG
* * *
25894823 TTATCAAAGTGCAAACAGGGGCACATAAGTGCAATCAGGAG
1 -TACCGAAGTACAAACAGGGGCACATAAGTGCAATCAGG-G
* *
25894864 TACCGAAGTACAAATAGGGGCACGTAAGTGCAATCAGGGG
1 TACCGAAGTACAAACAGGGGCACATAAGTGCAATCA-GGG
* * *
25894904 TACCGCAGTACAAATAGGGGCACATAAGTGCAATTAGAGG
1 TACCGAAGTACAAACAGGGGCACATAAGTGCAATCAG-GG
* * **
25894944 TATCGAAGTACAAACAGGTGCATGTAAGTGCAATCA
1 TACCGAAGTACAAACAGGGGCACATAAGTGCAATCA
25894980 TTCAATAATT
Statistics
Matches: 131, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.01
40 127 0.97
41 3 0.02
ACGTcount: A:0.37, C:0.18, G:0.28, T:0.16
Consensus pattern (39 bp):
TACCGAAGTACAAACAGGGGCACATAAGTGCAATCAGGG
Found at i:25894923 original size:80 final size:80
Alignment explanation
Indices: 25894779--25894979 Score: 235
Period size: 80 Copynumber: 2.5 Consensus size: 80
25894769 TATTTGATTT
* * * * * * *
25894779 AGAGTTACCGAAGTATAACCAGGGGCACAG-AAGTGCAACCAGGGTTATCAAAGTGCAAACAGGG
1 AGAGGTACCGAAGTACAAACAGGGGCAC-GTAAGTGCAATCAGGGGTACCAAAGTACAAACAGGG
25894843 GCACATAAGTGCAATC
65 GCACATAAGTGCAATC
* ** *
25894859 AG-GAGTACCGAAGTACAAATAGGGGCACGTAAGTGCAATCAGGGGTACCGCAGTACAAATAGGG
1 AGAG-GTACCGAAGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACCAAAGTACAAACAGGG
*
25894923 GCACATAAGTGCAATT
65 GCACATAAGTGCAATC
* * *
25894939 AGAGGTATCGAAGTACAAACAGGTGCATGTAAGTGCAATCA
1 AGAGGTACCGAAGTACAAACAGGGGCACGTAAGTGCAATCA
25894980 TTCAATAATT
Statistics
Matches: 102, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
79 2 0.02
80 99 0.97
81 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.28, T:0.16
Consensus pattern (80 bp):
AGAGGTACCGAAGTACAAACAGGGGCACGTAAGTGCAATCAGGGGTACCAAAGTACAAACAGGGG
CACATAAGTGCAATC
Found at i:25905752 original size:50 final size:50
Alignment explanation
Indices: 25905622--25905861 Score: 239
Period size: 50 Copynumber: 4.7 Consensus size: 50
25905612 GGAAATAAGA
* *
25905622 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATTAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C----CGA-TATGAGAGG
* * *
25905678 TCCCATGTAAGGCCATGTCAGGGACATGGCGTTGGCACCGATATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAGG
* * *
25905728 TCCAATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAGG
* * * * * **
25905778 TCCC-TCATAAGAACATGTCTAGGACATGGCATGGGCACTGATATGAGAAC
1 TCCCAT-GTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAGG
* * * *
25905828 TCCCATATAAGACCATATCTGAGATATGGCATTG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTG
25905862 ACAGTACAAG
Statistics
Matches: 157, Mismatches: 25, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
49 1 0.01
50 118 0.75
51 3 0.02
55 1 0.01
56 34 0.22
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAGG
Found at i:25907950 original size:21 final size:21
Alignment explanation
Indices: 25907925--25907966 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
25907915 CCATTGAATG
25907925 AAATAGTAAATTAAAAGTAAT
1 AAATAGTAAATTAAAAGTAAT
25907946 AAATAGTAAATTAAAAGTAAT
1 AAATAGTAAATTAAAAGTAAT
25907967 CTAAGTCGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.29
Consensus pattern (21 bp):
AAATAGTAAATTAAAAGTAAT
Found at i:25925198 original size:20 final size:20
Alignment explanation
Indices: 25925175--25925221 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
25925165 GGGTTAAAAT
*
25925175 TGAGCTGAATTGATCTCGAA-
1 TGAGCTGAATTGAGCTC-AAG
*
25925195 TGAGCTGACTTGAGCTCAAG
1 TGAGCTGAATTGAGCTCAAG
25925215 TGAGCTG
1 TGAGCTG
25925222 GAAACGAGCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 2 0.08
20 22 0.92
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.28
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCAAG
Found at i:25927139 original size:7 final size:9
Alignment explanation
Indices: 25927111--25927141 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
25927101 ATTAATGTTA
25927111 ATATAACAT
1 ATATAACAT
25927120 ATATAACAT
1 ATATAACAT
*
25927129 ATATAAAAT
1 ATATAACAT
25927138 ATAT
1 ATAT
25927142 TCATCTTGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (9 bp):
ATATAACAT
Found at i:25927626 original size:22 final size:22
Alignment explanation
Indices: 25927600--25927646 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
25927590 GAAGGTGGTG
*
25927600 GTTGTGTAAGCGTCAGCTTTTT
1 GTTGTGTAAGCATCAGCTTTTT
25927622 GTTGTGTAAGCATCAGCTTTTT
1 GTTGTGTAAGCATCAGCTTTTT
25927644 GTT
1 GTT
25927647 TCCAAGGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.15, C:0.13, G:0.26, T:0.47
Consensus pattern (22 bp):
GTTGTGTAAGCATCAGCTTTTT
Found at i:25931501 original size:30 final size:30
Alignment explanation
Indices: 25931467--25931543 Score: 127
Period size: 30 Copynumber: 2.6 Consensus size: 30
25931457 TGTGTCTCAT
*
25931467 CCGTGTGAGGCACACGACCTAGCCACATGG
1 CCGTGTGAGGCACACGACCTAGCCACACGG
*
25931497 CCGTGTGAGGCACACGACCTGGCCACACGG
1 CCGTGTGAGGCACACGACCTAGCCACACGG
*
25931527 CCGTGTAAGGCACACGA
1 CCGTGTGAGGCACACGA
25931544 AGGTATTTCT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.23, C:0.34, G:0.31, T:0.12
Consensus pattern (30 bp):
CCGTGTGAGGCACACGACCTAGCCACACGG
Found at i:25937270 original size:23 final size:23
Alignment explanation
Indices: 25937238--25937283 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
25937228 ATAAAATGTT
25937238 TGTTTGAAATTTAAGTTTGATTA
1 TGTTTGAAATTTAAGTTTGATTA
*
25937261 TGTTTTAAATTTAAGTTTGATTA
1 TGTTTGAAATTTAAGTTTGATTA
25937284 CTTTTATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.54
Consensus pattern (23 bp):
TGTTTGAAATTTAAGTTTGATTA
Found at i:25937546 original size:57 final size:58
Alignment explanation
Indices: 25937475--25937603 Score: 172
Period size: 57 Copynumber: 2.2 Consensus size: 58
25937465 AGGACATTAT
* * * *
25937475 CATTTTT-CATTTTTCATTTTTATTTTGAAGATAACCACATTCATTTCCAAACG-GTTC
1 CATTTTTCCA-TTTTCATTTTTAATTTGAAGAAAACCACAATCATTTCCAAACGTATTC
* * *
25937532 CATTTTTCCATTTTCATTTTTAATTTGGAGAAAACCATAATCATTTCCAAATGTATTC
1 CATTTTTCCATTTTCATTTTTAATTTGAAGAAAACCACAATCATTTCCAAACGTATTC
25937590 CATTTTTCCATTTT
1 CATTTTTCCATTTT
25937604 AATCATTTCT
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
57 44 0.70
58 19 0.30
ACGTcount: A:0.27, C:0.19, G:0.06, T:0.48
Consensus pattern (58 bp):
CATTTTTCCATTTTCATTTTTAATTTGAAGAAAACCACAATCATTTCCAAACGTATTC
Found at i:25938993 original size:17 final size:17
Alignment explanation
Indices: 25938973--25939007 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
25938963 TAAAACCATA
*
25938973 ATTTGATAAAAATAAAT
1 ATTTCATAAAAATAAAT
*
25938990 ATTTCATAAAAATTAAT
1 ATTTCATAAAAATAAAT
25939007 A
1 A
25939008 AAACATCAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37
Consensus pattern (17 bp):
ATTTCATAAAAATAAAT
Found at i:25942639 original size:27 final size:27
Alignment explanation
Indices: 25942597--25943005 Score: 391
Period size: 27 Copynumber: 15.2 Consensus size: 27
25942587 GAGAGGTCAA
* **
25942597 AAAATGACCGAATTACCCTTGAAGGGT
1 AAAATGACTGAATTACCCCCGAAGGGT
*
25942624 AAAATGACTGACTTACCCCCGAAGGGT
1 AAAATGACTGAATTACCCCCGAAGGGT
* *
25942651 AAAATGA-TAGAATTACCCCCGTATGGT
1 AAAATGACT-GAATTACCCCCGAAGGGT
**
25942678 -AAATGACTGAATTAGTCCCGAAGGGT
1 AAAATGACTGAATTACCCCCGAAGGGT
25942704 AAAATGAGC-GAATTACCCCCGAAGGGT
1 AAAATGA-CTGAATTACCCCCGAAGGGT
* *
25942731 AAAATGACTGAATTACCCCCAAAAGGT
1 AAAATGACTGAATTACCCCCGAAGGGT
* * * * *
25942758 AAACTGACCGAATTACACCCAAAAGGT
1 AAAATGACTGAATTACCCCCGAAGGGT
* * *
25942785 -AAATGA-TCAAATTACCCCTGAATGGT
1 AAAATGACT-GAATTACCCCCGAAGGGT
* *
25942811 AAATTGACTGAATTACCCCCGAAGGTT
1 AAAATGACTGAATTACCCCCGAAGGGT
* * *
25942838 AAAATGA-TCAAATTACCCTCGAATGGT
1 AAAATGACT-GAATTACCCCCGAAGGGT
* *
25942865 AAAATGAATGAATTACCCTCGAAGGGT
1 AAAATGACTGAATTACCCCCGAAGGGT
* * *
25942892 AACATGACCGAATTACCCCCAAAGGGT
1 AAAATGACTGAATTACCCCCGAAGGGT
*
25942919 AAAATGA-TCGAATTACCCCCTAAAGGGT
1 AAAATGACT-GAATTACCCCC-GAAGGGT
* ** **
25942947 AAAATAACTGAATTACCCCTAAACAGT
1 AAAATGACTGAATTACCCCCGAAGGGT
**
25942974 AAAATGACTGAATTACCCCTAAAGGGT
1 AAAATGACTGAATTACCCCCGAAGGGT
25943001 AAAAT
1 AAAAT
25943006 TACCAAAATC
Statistics
Matches: 318, Mismatches: 51, Indels: 26
0.81 0.13 0.07
Matches are distributed among these distances:
26 41 0.13
27 250 0.79
28 26 0.08
29 1 0.00
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.21
Consensus pattern (27 bp):
AAAATGACTGAATTACCCCCGAAGGGT
Found at i:25942731 original size:80 final size:77
Alignment explanation
Indices: 25942598--25942992 Score: 314
Period size: 80 Copynumber: 4.9 Consensus size: 77
25942588 AGAGGTCAAA
* *
25942598 AAATGACCGAATT-ACCCTTGAAGGGTAAAATGACTGACTTACCCCCGAAGGGTAAAATGA-TAG
1 AAATGACTGAATTAACCC--GAAGGGTAAAATGAC-GAATTACCCCCGAAGGGTAAAATGACT-G
*
25942661 AATTACCCCCGTATGGT
62 AATTACCCCCG-AAGGT
*
25942678 AAATGACTGAATTAGTCCCGAAGGGTAAAATGAGCGAATTACCCCCGAAGGGTAAAATGACTGAA
1 AAATGACTGAATTA-ACCCGAAGGGTAAAATGA-CGAATTACCCCCGAAGGGTAAAATGACTGAA
*
25942743 TTACCCCCAAAAGGT
64 TTACCCCC-GAAGGT
* * * * * * *
25942758 AAACTGACCGAATTACACCCAAAAGGT-AAATGATCAAATTACCCCTGAATGGTAAATTGACTGA
1 AAA-TGACTGAATTA-ACCCGAAGGGTAAAATGA-CGAATTACCCCCGAAGGGTAAAATGACTGA
25942822 ATTACCCCCGAAGGTT
63 ATTACCCCCGAAGG-T
* * * * * * *
25942838 AAAATGA-TCAAATTACCCTCGAATGGTAAAATGAATGAATTACCCTCGAAGGGTAACATGACCG
1 -AAATGACT-GAATTAACC-CGAAGGGTAAAATG-ACGAATTACCCCCGAAGGGTAAAATGACTG
*
25942902 AATTACCCCCAAAGGGT
62 AATTACCCCCGAA-GGT
* * * ** **
25942919 AAAATGA-TCGAATTACCCCCTAAAGGGTAAAATAACTGAATTACCCCTAAACAGTAAAATGACT
1 -AAATGACT-GAATTA-ACCC-GAAGGGTAAAATGAC-GAATTACCCCCGAAGGGTAAAATGACT
25942983 GAATTACCCC
61 GAATTACCCC
25942993 TAAAGGGTAA
Statistics
Matches: 257, Mismatches: 42, Indels: 30
0.78 0.13 0.09
Matches are distributed among these distances:
79 6 0.02
80 124 0.48
81 78 0.30
82 49 0.19
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.21
Consensus pattern (77 bp):
AAATGACTGAATTAACCCGAAGGGTAAAATGACGAATTACCCCCGAAGGGTAAAATGACTGAATT
ACCCCCGAAGGT
Found at i:25942733 original size:107 final size:105
Alignment explanation
Indices: 25942597--25942992 Score: 379
Period size: 107 Copynumber: 3.7 Consensus size: 105
25942587 GAGAGGTCAA
** * * *
25942597 AAAATGACCGAATTACCCTTGAAGGGTAAAATGACTGACTTACCCCCGAAGGGTAAAATGATAGA
1 AAAATGA-CGAATTACCCCCGAAGGGTAAAATGACTGAATTACCCCCAAAAGGTAAAATGATAGA
* * *
25942662 ATTACCCCCGTATGGTAAATGACTGAATTAGTCCCGAAGGGT
65 ATTACCCCCGAAAGGTAAATGACTGAATTA-CCCCGAAGGGT
* **
25942704 AAAATGAGCGAATTACCCCCGAAGGGTAAAATGACTGAATTACCCCCAAAAGGTAAACTGACCGA
1 AAAATGA-CGAATTACCCCCGAAGGGTAAAATGACTGAATTACCCCCAAAAGGTAAAATGATAGA
* * * *
25942769 ATTACACCCAAAAGGTAAATGA-TCAAATTACCCCTGAATGGT
65 ATTACCCCCGAAAGGTAAATGACT-GAATTACCCC-GAAGGGT
* * * * * *
25942811 AAATTGACTGAATTACCCCCGAAGGTTAAAATGA-TCAAATTACCCTCGAATGGTAAAATGA-AT
1 AAAATGAC-GAATTACCCCCGAAGGGTAAAATGACT-GAATTACCCCCAAAAGGTAAAATGATA-
* * * *
25942874 GAATTACCCTCGAAGGGTAACATGACCGAATTACCCCCAAAGGGT
63 GAATTACCCCCGAAAGGTAA-ATGACTGAATTA-CCCCGAAGGGT
* * *
25942919 AAAATGATCGAATTACCCCCTAAAGGGTAAAATAACTGAATTACCCCTAAACA-GTAAAATGACT
1 AAAATGA-CGAATTACCCCC-GAAGGGTAAAATGACTGAATTACCCCCAAA-AGGTAAAATGA-T
25942983 -GAATTACCCC
62 AGAATTACCCC
25942993 TAAAGGGTAA
Statistics
Matches: 233, Mismatches: 42, Indels: 26
0.77 0.14 0.09
Matches are distributed among these distances:
106 6 0.03
107 151 0.65
108 31 0.13
109 44 0.19
110 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.21
Consensus pattern (105 bp):
AAAATGACGAATTACCCCCGAAGGGTAAAATGACTGAATTACCCCCAAAAGGTAAAATGATAGAA
TTACCCCCGAAAGGTAAATGACTGAATTACCCCGAAGGGT
Found at i:25942868 original size:161 final size:163
Alignment explanation
Indices: 25942597--25942992 Score: 414
Period size: 161 Copynumber: 2.5 Consensus size: 163
25942587 GAGAGGTCAA
* * * * * * ** **
25942597 AAAATGACCGAATTAC-CCTTGAAGGGTAAAATGACTGACTTACCCCCGAAGGGTAAAATGA-TA
1 AAAATGACCGAATTACACCCTAAAAGGTAAAATAACTAAATTACCCCTAAACAGTAAAATGACT-
* * * *
25942660 GAATTACCCCCGTATGG-T-AAATGA-CTGAATTAGTCC-CGAAGGGTAAAATGAGCGAATTACC
65 GAATTACCCCCG-AAGGTTAAAATGATC-AAATTA-CCCTCGAAGGGTAAAATGAACGAATTACC
*
25942721 CCCGAAGGGTAAAATGACTGAATTACCCCCAAAAGGT
127 CCCGAAGGGTAAAATGACCGAATTACCCCCAAAAGGT
* * * ** *
25942758 AAACTGACCGAATTACACCC-AAAAGGT-AAATGA-TCAAATTACCCCTGAATGGTAAATTGACT
1 AAAATGACCGAATTACACCCTAAAAGGTAAAATAACT-AAATTACCCCTAAACAGTAAAATGACT
* * *
25942820 GAATTACCCCCGAAGGTTAAAATGATCAAATTACCCTCGAATGGTAAAATGAATGAATTACCCTC
65 GAATTACCCCCGAAGGTTAAAATGATCAAATTACCCTCGAAGGGTAAAATGAACGAATTACCCCC
* *
25942885 GAAGGGTAACATGACCGAATTACCCCCAAAGGGT
130 GAAGGGTAAAATGACCGAATTACCCCCAAAAGGT
* * * *
25942919 AAAATGATCGAATTACCCCCTAAAGGGTAAAATAACTGAATTACCCCTAAACAGTAAAATGACTG
1 AAAATGACCGAATTACACCCTAAAAGGTAAAATAACTAAATTACCCCTAAACAGTAAAATGACTG
25942984 AATTACCCC
66 AATTACCCC
25942993 TAAAGGGTAA
Statistics
Matches: 196, Mismatches: 29, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
159 4 0.02
160 41 0.21
161 104 0.53
162 9 0.05
163 37 0.19
164 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.21
Consensus pattern (163 bp):
AAAATGACCGAATTACACCCTAAAAGGTAAAATAACTAAATTACCCCTAAACAGTAAAATGACTG
AATTACCCCCGAAGGTTAAAATGATCAAATTACCCTCGAAGGGTAAAATGAACGAATTACCCCCG
AAGGGTAAAATGACCGAATTACCCCCAAAAGGT
Found at i:25943110 original size:24 final size:24
Alignment explanation
Indices: 25943080--25943166 Score: 140
Period size: 24 Copynumber: 3.6 Consensus size: 24
25943070 CCCTCGAGGT
* *
25943080 TAAATGATTGATTTGTCTGTGATG
1 TAAATGACTGATTTGTCTATGATG
25943104 TAAATGACTGATTTGTCTATGATG
1 TAAATGACTGATTTGTCTATGATG
25943128 TAAATGACTGATTTGTCTATGACT-
1 TAAATGACTGATTTGTCTATGA-TG
25943152 TAAATGACTGATTTG
1 TAAATGACTGATTTG
25943167 ACTGTGATTC
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
24 59 0.98
25 1 0.02
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.43
Consensus pattern (24 bp):
TAAATGACTGATTTGTCTATGATG
Found at i:25945060 original size:27 final size:27
Alignment explanation
Indices: 25944756--25945080 Score: 341
Period size: 27 Copynumber: 12.1 Consensus size: 27
25944746 AAAAAATGGT
* *
25944756 CGAATTACCGCTGAAGGGTAAAATGAT
1 CGAATTACCCCTGAAGGGTAAAATGAC
* ** * * *
25944783 CAAATTACCCCCAAAAGTTAAAATGAT
1 CGAATTACCCCTGAAGGGTAAAATGAC
*
25944810 CGAATTA-CCCTCGAAGGGTAAAATGAT
1 CGAATTACCCCT-GAAGGGTAAAATGAC
* * *
25944837 CGAATTACCCCCGAAAGGTAAAATAAC
1 CGAATTACCCCTGAAGGGTAAAATGAC
* *
25944864 AGAATTACCCCCGAAGGGT-AAATGAC
1 CGAATTACCCCTGAAGGGTAAAATGAC
** *
25944890 TAAATTACCCCCGAAGGGTAAAATGAC
1 CGAATTACCCCTGAAGGGTAAAATGAC
** *
25944917 AAAATTACCCTTGAAGGGTAAAATGAC
1 CGAATTACCCCTGAAGGGTAAAATGAC
* *
25944944 CGAAGTACCCTTGAAGGGTAAAATGAC
1 CGAATTACCCCTGAAGGGTAAAATGAC
*
25944971 CGAATTACCCCCGAAGGGTAAAATGAC
1 CGAATTACCCCTGAAGGGTAAAATGAC
* *
25944998 CGAATTACCCTTAAAGGGTAAAATGAC
1 CGAATTACCCCTGAAGGGTAAAATGAC
* *
25945025 TGAATTACCCCTGAAGGGTAAAATAAC
1 CGAATTACCCCTGAAGGGTAAAATGAC
* * *
25945052 CAAAATACCCCTGTAA-TGTAAAATGAC
1 CGAATTACCCCTG-AAGGGTAAAATGAC
25945079 CG
1 CG
25945081 TAATGCCCCT
Statistics
Matches: 252, Mismatches: 42, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
26 26 0.10
27 221 0.88
28 5 0.02
ACGTcount: A:0.41, C:0.21, G:0.19, T:0.20
Consensus pattern (27 bp):
CGAATTACCCCTGAAGGGTAAAATGAC
Found at i:25945153 original size:24 final size:24
Alignment explanation
Indices: 25945123--25945170 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
25945113 CCCTCGAGGT
* *
25945123 TAAATGATTGATTTGTCTGTGATG
1 TAAATGACTGATTTGTCTATGATG
25945147 TAAATGACTGATTTGTCTATGATG
1 TAAATGACTGATTTGTCTATGATG
25945171 GCTTTGTCTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.27, C:0.06, G:0.23, T:0.44
Consensus pattern (24 bp):
TAAATGACTGATTTGTCTATGATG
Found at i:25945252 original size:32 final size:32
Alignment explanation
Indices: 25945216--25945384 Score: 216
Period size: 32 Copynumber: 5.3 Consensus size: 32
25945206 TGAAGTACCC
*
25945216 CTGATGGCTTTGTGCCGATCATATCACTGTTA
1 CTGATGGCTTTGTGCCGATCATATTACTGTTA
* *
25945248 CTGATGGCTTTGTGCTGATCATATTACTATTA
1 CTGATGGCTTTGTGCCGATCATATTACTGTTA
* * *
25945280 CTGATGGCTTTGTACTGATTATATTA-TCGTTA
1 CTGATGGCTTTGTGCCGATCATATTACT-GTTA
* * *
25945312 CTGATGTCTTTGTACCGATCATATTACCGTTA
1 CTGATGGCTTTGTGCCGATCATATTACTGTTA
*
25945344 CTGATGGCTTTGTGCCAATCATATTACTG-TA
1 CTGATGGCTTTGTGCCGATCATATTACTGTTA
*
25945375 CTTATGGCTT
1 CTGATGGCTT
25945385 GTAGCCATTC
Statistics
Matches: 120, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
31 12 0.10
32 108 0.90
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.42
Consensus pattern (32 bp):
CTGATGGCTTTGTGCCGATCATATTACTGTTA
Found at i:25945406 original size:22 final size:22
Alignment explanation
Indices: 25945381--25945422 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
25945371 TGTACTTATG
* *
25945381 GCTTGTAGCCATTCTGTTTAGA
1 GCTTATAGCCATCCTGTTTAGA
*
25945403 GCTTATAGCTATCCTGTTTA
1 GCTTATAGCCATCCTGTTTA
25945423 CGGCTATTAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.43
Consensus pattern (22 bp):
GCTTATAGCCATCCTGTTTAGA
Found at i:25945474 original size:37 final size:37
Alignment explanation
Indices: 25945419--25945489 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
25945409 AGCTATCCTG
25945419 TTTACGGCTATTAGCCATTTTGATTACTGGCAGCCTA
1 TTTACGGCTATTAGCCATTTTGATTACTGGCAGCCTA
* *
25945456 TTTACGGCTCTTATCCATTTTGATTACTGGCAGC
1 TTTACGGCTATTAGCCATTTTGATTACTGGCAGC
25945490 TTTGCTTCGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.39
Consensus pattern (37 bp):
TTTACGGCTATTAGCCATTTTGATTACTGGCAGCCTA
Found at i:25949882 original size:9 final size:9
Alignment explanation
Indices: 25949868--25949896 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
25949858 TGTTACCCCC
25949868 TTCAATTAA
1 TTCAATTAA
25949877 TTCAATTAA
1 TTCAATTAA
25949886 TTCAATTAA
1 TTCAATTAA
25949895 TT
1 TT
25949897 ATATGGCTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.48
Consensus pattern (9 bp):
TTCAATTAA
Found at i:25955083 original size:28 final size:28
Alignment explanation
Indices: 25955052--25955142 Score: 148
Period size: 28 Copynumber: 3.2 Consensus size: 28
25955042 CAGTGGTAGT
*
25955052 ACAGTGTGGGCCTTAGCCCAGTACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
25955080 ACAGTGTGGGCCTTAGCCCAATACAG-A
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
25955107 ATCAGTGTGGGCCTTAGCCCAATACAGTA
1 A-CAGTGTGGGCCTTAGCCCAATACAGTA
*
25955136 ATAGTGT
1 ACAGTGT
25955143 AGTACAATAA
Statistics
Matches: 59, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
27 2 0.03
28 55 0.93
29 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.23
Consensus pattern (28 bp):
ACAGTGTGGGCCTTAGCCCAATACAGTA
Found at i:25955590 original size:27 final size:27
Alignment explanation
Indices: 25955560--25956038 Score: 463
Period size: 27 Copynumber: 17.9 Consensus size: 27
25955550 TGTAACAGTT
* * *
25955560 ATTTTACCTTATGGGGGCATTTCGATC
1 ATTTTACCCTATAGGGGTATTTCGATC
* * *
25955587 ATTTTACGCTATAAGGGTATTTCGGTC
1 ATTTTACCCTATAGGGGTATTTCGATC
* * * *
25955614 ATTTTACCTTAT-GAGG-ATCCTTCGGTT
1 ATTTTACCCTATAGGGGTAT--TTCGATC
* *
25955641 ATTTTACCCTATAAGGGTATTTCGATT
1 ATTTTACCCTATAGGGGTATTTCGATC
* * * *
25955668 ATTTTACCTTATGGGGGTATTT-AAGGC
1 ATTTTACCCTATAGGGGTATTTCGA-TC
*
25955695 ATTTTACCCTAT-GGGGTATTTCAATC
1 ATTTTACCCTATAGGGGTATTTCGATC
* *
25955721 ATTTTACCCTATGGGGGTATTTTGATC
1 ATTTTACCCTATAGGGGTATTTCGATC
*
25955748 ATTTTACCCTATAAGGGTATTTCGATC
1 ATTTTACCCTATAGGGGTATTTCGATC
* * *
25955775 ATTTTACCCTATGGGGGTATTTCGTTT
1 ATTTTACCCTATAGGGGTATTTCGATC
* *
25955802 ATTTTACCCTAT-GTGGTATTT-TAGTC
1 ATTTTACCCTATAGGGGTATTTCGA-TC
*
25955828 ATTTTACCCTAT-GGGGTATTCCGATC
1 ATTTTACCCTATAGGGGTATTTCGATC
* * * * *
25955854 ATTTAACCTTATGGGGGTATTTTGGTC
1 ATTTTACCCTATAGGGGTATTTCGATC
*
25955881 A-TTTACCCTATAGGGGTATTTCGGTC
1 ATTTTACCCTATAGGGGTATTTCGATC
* * *
25955907 ATTTTACCTTATAAGGGTATTT-GGTC
1 ATTTTACCCTATAGGGGTATTTCGATC
* *
25955933 ATTTTACCCTATGGGGGTATTTCGGTC
1 ATTTTACCCTATAGGGGTATTTCGATC
* * * *
25955960 ATTTTATCTTATAGGGGTATTTTGGTC
1 ATTTTACCCTATAGGGGTATTTCGATC
* *
25955987 ATTTTACCCTATAGGGGTATTTTGGTC
1 ATTTTACCCTATAGGGGTATTTCGATC
*
25956014 ATTTTACCCTATAAGGGTATTTCGA
1 ATTTTACCCTATAGGGGTATTTCGA
25956039 CCTCTTAGAA
Statistics
Matches: 378, Mismatches: 62, Indels: 24
0.81 0.13 0.05
Matches are distributed among these distances:
25 2 0.01
26 110 0.29
27 262 0.69
28 2 0.01
29 2 0.01
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.43
Consensus pattern (27 bp):
ATTTTACCCTATAGGGGTATTTCGATC
Found at i:25955621 original size:54 final size:54
Alignment explanation
Indices: 25955560--25956037 Score: 520
Period size: 54 Copynumber: 8.9 Consensus size: 54
25955550 TGTAACAGTT
* * *
25955560 ATTTTACCTTATGGGGGCATTTCGATCATTTTACGCTATAAGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATAAGGGTATTTCGGTC
* * * ** * * * *
25955614 ATTTTACCTTATGAGGATCCTTCGGTTATTTTACCCTATAAGGGTATTTCGATT
1 ATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATAAGGGTATTTCGGTC
* * * * **
25955668 ATTTTACCTTATGGGGGTATTT-AAGGCATTTTACCCTAT-GGGGTATTTCAATC
1 ATTTTACCCTATGGGGGTATTTCGA-TCATTTTACCCTATAAGGGTATTTCGGTC
* *
25955721 ATTTTACCCTATGGGGGTATTTTGATCATTTTACCCTATAAGGGTATTTCGATC
1 ATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATAAGGGTATTTCGGTC
* * **
25955775 ATTTTACCCTATGGGGGTATTTCGTTTATTTTACCCTAT--GTGGTATTTTAGTC
1 ATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATAAG-GGTATTTCGGTC
* * * ** *
25955828 ATTTTACCCTAT-GGGGTATTCCGATCATTTAACCTTATGGGGGTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATAAGGGTATTTCGGTC
* * *
25955881 A-TTTACCCTATAGGGGTATTTCGGTCATTTTACCTTATAAGGGTATTT-GGTC
1 ATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATAAGGGTATTTCGGTC
* * * * *
25955933 ATTTTACCCTATGGGGGTATTTCGGTCATTTTATCTTATAGGGGTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATAAGGGTATTTCGGTC
* * *
25955987 ATTTTACCCTATAGGGGTATTTTGGTCATTTTACCCTATAAGGGTATTTCG
1 ATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATAAGGGTATTTCG
25956038 ACCTCTTAGA
Statistics
Matches: 363, Mismatches: 52, Indels: 18
0.84 0.12 0.04
Matches are distributed among these distances:
52 37 0.10
53 153 0.42
54 173 0.48
ACGTcount: A:0.20, C:0.16, G:0.21, T:0.44
Consensus pattern (54 bp):
ATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATAAGGGTATTTCGGTC
Found at i:25957070 original size:24 final size:24
Alignment explanation
Indices: 25957045--25957091 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
25957035 CCCAAATCCC
*
25957045 AATATTCTCTCCTCAAATCTCTCCA
1 AATATCCT-TCCTCAAATCTCTCCA
*
25957070 AATATCCTTCCTCAATTCTCTC
1 AATATCCTTCCTCAAATCTCTC
25957092 TATGACCAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.26, C:0.36, G:0.00, T:0.38
Consensus pattern (24 bp):
AATATCCTTCCTCAAATCTCTCCA
Found at i:25957853 original size:16 final size:17
Alignment explanation
Indices: 25957822--25957854 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
25957812 TCAAGGTCTC
*
25957822 CCTACAGTTTTCAGTTT
1 CCTACAGTTCTCAGTTT
25957839 CCTACAG-TCTCAGTTT
1 CCTACAGTTCTCAGTTT
25957855 ACTCTAACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.18, C:0.27, G:0.12, T:0.42
Consensus pattern (17 bp):
CCTACAGTTCTCAGTTT
Found at i:25964682 original size:25 final size:25
Alignment explanation
Indices: 25964654--25964712 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
25964644 CTCTTATGAC
* *
25964654 CTTATCGTTACTCAGCTCAGAGGAG
1 CTTACCGTTACTCAGCTCAGAAGAG
* *
25964679 CTTACCGTTATTCATCTCAGAAGAG
1 CTTACCGTTACTCAGCTCAGAAGAG
25964704 CTTACCGTT
1 CTTACCGTT
25964713 TACAACTCGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (25 bp):
CTTACCGTTACTCAGCTCAGAAGAG
Found at i:25973115 original size:42 final size:42
Alignment explanation
Indices: 25973066--25973156 Score: 155
Period size: 42 Copynumber: 2.2 Consensus size: 42
25973056 ATGATTAAAA
25973066 TAACTAAAAGAGTTTAAGTCTTATTCCAACAGCTGAATTAGC
1 TAACTAAAAGAGTTTAAGTCTTATTCCAACAGCTGAATTAGC
* *
25973108 TAACTAAAAGAGTTTAAGTCTTATTCCAGCAGTTGAATTAGC
1 TAACTAAAAGAGTTTAAGTCTTATTCCAACAGCTGAATTAGC
*
25973150 TAGCTAA
1 TAACTAA
25973157 GATTGACATT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.32
Consensus pattern (42 bp):
TAACTAAAAGAGTTTAAGTCTTATTCCAACAGCTGAATTAGC
Found at i:25987670 original size:20 final size:19
Alignment explanation
Indices: 25987641--25987678 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
25987631 AGCTAATAAC
25987641 GAGCTCAATGAGCTGAATT
1 GAGCTCAATGAGCTGAATT
25987660 GAGCTCGAATGAGCTGAAT
1 GAGCTC-AATGAGCTGAAT
25987679 CAAAAATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.24
Consensus pattern (19 bp):
GAGCTCAATGAGCTGAATT
Found at i:25989159 original size:22 final size:20
Alignment explanation
Indices: 25989121--25989186 Score: 71
Period size: 20 Copynumber: 3.2 Consensus size: 20
25989111 CAAATTCTTT
* *
25989121 TTTCTTTTTCTC-ACTCTCA
1 TTTCTTTTTTTCTTCTCTCA
*
25989140 TTTTCTTTTTCTTTTTCTCTCA
1 -TTTCTTTTT-TTCTTCTCTCA
25989162 TTTCTTTTTTTCTTCTCTCAA
1 TTTCTTTTTTTCTTCTCTC-A
25989183 TTTC
1 TTTC
25989187 ATTCAAGATT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
20 18 0.46
21 15 0.38
22 6 0.15
ACGTcount: A:0.08, C:0.26, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTCTTTTTTTCTTCTCTCA
Found at i:25989646 original size:3 final size:3
Alignment explanation
Indices: 25989640--25989665 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
25989630 AGAAATGTTA
25989640 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
25989666 CAGAAAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:25991813 original size:20 final size:20
Alignment explanation
Indices: 25991788--25991836 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
25991778 AATGAGCTAG
25991788 TGAGCTAATAACGAGCTC-AA
1 TGAGCTAAT-ACGAGCTCGAA
**
25991808 TGAGCTGAATTTGAGCTCGAA
1 TGAGCT-AATACGAGCTCGAA
25991829 TGAGCTAA
1 TGAGCTAA
25991837 ATCAAAAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 14 0.56
21 11 0.44
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.24
Consensus pattern (20 bp):
TGAGCTAATACGAGCTCGAA
Found at i:25997189 original size:12 final size:12
Alignment explanation
Indices: 25997172--25997198 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
25997162 CACACACCCA
25997172 TGTGCTAGGCCG
1 TGTGCTAGGCCG
25997184 TGTGCTAGGCCG
1 TGTGCTAGGCCG
25997196 TGT
1 TGT
25997199 AACAGCCTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.22, G:0.41, T:0.30
Consensus pattern (12 bp):
TGTGCTAGGCCG
Found at i:26003671 original size:13 final size:14
Alignment explanation
Indices: 26003646--26003676 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
26003636 GTAATGGACA
26003646 TTGGACATTAAATT
1 TTGGACATTAAATT
26003660 TTGGAC-TTAAATT
1 TTGGACATTAAATT
26003673 TTGG
1 TTGG
26003677 TAATTTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.29, C:0.06, G:0.19, T:0.45
Consensus pattern (14 bp):
TTGGACATTAAATT
Found at i:26006499 original size:20 final size:20
Alignment explanation
Indices: 26006474--26006512 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
26006464 TACTTTCTTC
26006474 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
26006494 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
26006513 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:26006839 original size:50 final size:50
Alignment explanation
Indices: 26006715--26006956 Score: 247
Period size: 50 Copynumber: 4.7 Consensus size: 50
26006705 GATAATAACA
* * * * *
26006715 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-TGTTTCCTGT-AC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACT-TCTCATATCAG
* * * * * *
26006764 TGCCAATGCCATATCCAAGATATGGTATTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATATCAG
* *
26006814 TGCCCATGCCATGTCCCAGACATGGTCTTACGA-GGGACTTCTCATCTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTAC-ATGGGACTTCTCATATCAG
* * *
26006864 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCAT-A--TC---AG
26006920 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
26006957 TCTCATTCCT
Statistics
Matches: 159, Mismatches: 24, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
49 38 0.24
50 81 0.51
51 1 0.01
53 2 0.01
56 37 0.23
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACTTCTCATATCAG
Found at i:26011362 original size:26 final size:26
Alignment explanation
Indices: 26011333--26011382 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
26011323 GGCACTACTT
26011333 CTATCAGTTTATTTGACTAGTGCCCG
1 CTATCAGTTTATTTGACTAGTGCCCG
26011359 CTATCAGTTTATTTGACTAGTGCC
1 CTATCAGTTTATTTGACTAGTGCC
26011383 GGGCACATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.20, C:0.22, G:0.18, T:0.40
Consensus pattern (26 bp):
CTATCAGTTTATTTGACTAGTGCCCG
Found at i:26012912 original size:18 final size:20
Alignment explanation
Indices: 26012889--26012937 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
26012879 AAGAGTGACG
26012889 AGAGAAAAAGAAACT-AAAA
1 AGAGAAAAAGAAACTGAAAA
*
26012908 A-AGAAACAA-AAATTGAAAA
1 AGAGAAA-AAGAAACTGAAAA
26012927 AGAGAAAAAGA
1 AGAGAAAAAGA
26012938 TTGGAGAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
18 9 0.36
19 10 0.40
20 6 0.24
ACGTcount: A:0.73, C:0.04, G:0.16, T:0.06
Consensus pattern (20 bp):
AGAGAAAAAGAAACTGAAAA
Found at i:26029998 original size:11 final size:11
Alignment explanation
Indices: 26029982--26030007 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
26029972 TGTGTGAATA
26029982 ATTATTTTATT
1 ATTATTTTATT
26029993 ATTATTTTATT
1 ATTATTTTATT
26030004 ATTA
1 ATTA
26030008 CCGTTTGCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (11 bp):
ATTATTTTATT
Found at i:26031054 original size:29 final size:29
Alignment explanation
Indices: 26031021--26031101 Score: 135
Period size: 29 Copynumber: 2.8 Consensus size: 29
26031011 CTATGAAAAG
26031021 GGCTATCGATTATGAAAAAGGATAGCTTC
1 GGCTATCGATTATGAAAAAGGATAGCTTC
26031050 GGCTATCGATTATGAAAAAGGATAGCTTC
1 GGCTATCGATTATGAAAAAGGATAGCTTC
* * *
26031079 AGCTATCAATTATGAAAAGGGAT
1 GGCTATCGATTATGAAAAAGGAT
26031102 GGTGACGACC
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 49 1.00
ACGTcount: A:0.37, C:0.12, G:0.23, T:0.27
Consensus pattern (29 bp):
GGCTATCGATTATGAAAAAGGATAGCTTC
Found at i:26031115 original size:29 final size:29
Alignment explanation
Indices: 26031083--26031229 Score: 183
Period size: 29 Copynumber: 5.1 Consensus size: 29
26031073 AGCTTCAGCT
*
26031083 ATCAATTATGAAAAGGGATGGTGACGACC
1 ATCAACTATGAAAAGGGATGGTGACGACC
*
26031112 ATCAACTATGAAAAGGGGTGGTGACGACC
1 ATCAACTATGAAAAGGGATGGTGACGACC
* * *
26031141 ATCGAA-TATGAAAAGGGATAGCT-TC-AGCT
1 ATC-AACTATGAAAAGGGAT-GGTGACGA-CC
*
26031170 ATCAATTATGAAAAGGGATGGTGACGACC
1 ATCAACTATGAAAAGGGATGGTGACGACC
*
26031199 ATCAACTATGAAATGGGATGGTGACGACC
1 ATCAACTATGAAAAGGGATGGTGACGACC
26031228 AT
1 AT
26031230 TGTGATTCCA
Statistics
Matches: 101, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
28 5 0.05
29 91 0.90
30 5 0.05
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.21
Consensus pattern (29 bp):
ATCAACTATGAAAAGGGATGGTGACGACC
Found at i:26031177 original size:87 final size:87
Alignment explanation
Indices: 26031054--26031229 Score: 316
Period size: 87 Copynumber: 2.0 Consensus size: 87
26031044 AGCTTCGGCT
*
26031054 ATCGATTATGAAAAAGGATAGCTTCAGCTATCAATTATGAAAAGGGATGGTGACGACCATCAACT
1 ATCGAATATGAAAAAGGATAGCTTCAGCTATCAATTATGAAAAGGGATGGTGACGACCATCAACT
*
26031119 ATGAAAAGGGGTGGTGACGACC
66 ATGAAAAGGGATGGTGACGACC
*
26031141 ATCGAATATGAAAAGGGATAGCTTCAGCTATCAATTATGAAAAGGGATGGTGACGACCATCAACT
1 ATCGAATATGAAAAAGGATAGCTTCAGCTATCAATTATGAAAAGGGATGGTGACGACCATCAACT
*
26031206 ATGAAATGGGATGGTGACGACC
66 ATGAAAAGGGATGGTGACGACC
26031228 AT
1 AT
26031230 TGTGATTCCA
Statistics
Matches: 85, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 85 1.00
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (87 bp):
ATCGAATATGAAAAAGGATAGCTTCAGCTATCAATTATGAAAAGGGATGGTGACGACCATCAACT
ATGAAAAGGGATGGTGACGACC
Found at i:26048447 original size:17 final size:16
Alignment explanation
Indices: 26048405--26048447 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
26048395 ATCAAATAAA
*
26048405 AAATTTAAATAATTTT
1 AAATTTAAATAATTAT
*
26048421 AAATTCAAATAAATTAT
1 AAATTTAAAT-AATTAT
*
26048438 ACATTTAAAT
1 AAATTTAAAT
26048448 TCTATTTATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (16 bp):
AAATTTAAATAATTAT
Found at i:26048787 original size:41 final size:41
Alignment explanation
Indices: 26048704--26048800 Score: 110
Period size: 41 Copynumber: 2.4 Consensus size: 41
26048694 TTTGGACAAA
* *
26048704 AAAATGCC-ACAAAAAATCGAGCATTAGCGGCGCTTTACGT
1 AAAATGCCGCCAAAAAATCGAGCATTAGCGACGCTTTACGT
*
26048744 AAAATGCCGCCAAAGAAA-CGAGCATTAGCGACGCTATT-TGT
1 AAAATGCCGCCAAA-AAATCGAGCATTAGCGACGCT-TTACGT
* *
26048785 AAAACGCCGCTAAAAA
1 AAAATGCCGCCAAAAA
26048801 CAAGCGTTAG
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
40 10 0.20
41 34 0.69
42 5 0.10
ACGTcount: A:0.40, C:0.23, G:0.20, T:0.18
Consensus pattern (41 bp):
AAAATGCCGCCAAAAAATCGAGCATTAGCGACGCTTTACGT
Found at i:26048962 original size:41 final size:39
Alignment explanation
Indices: 26048901--26049114 Score: 212
Period size: 41 Copynumber: 5.2 Consensus size: 39
26048891 TTTCAAACCA
* * *
26048901 CGCCGCTAATGCTCCTGTCTTTAGTGGCGTTTTTGAATAAT
1 CGCCGCTAATGCTCCGGTCTTTAGCGGCGTTTTT-AA-AAG
* *
26048942 CGCCGCTAATGCTGCGGTCTTTAGCGGCGTTTTCTAAGATG
1 CGCCGCTAATGCTCCGGTCTTTAGCGGCGTTTT-TAA-AAG
* * * *
26048983 CGCTGCTAATGCTCAGGTCTTTAGCGGCGCTTTGTAAGAGG
1 CGCCGCTAATGCTCCGGTCTTTAGCGGCG-TTTTTAA-AAG
* * *
26049024 CGCCGCTAATGCTACGGTCTTCAGCGGCGTTTCTCAGAAAG
1 CGCCGCTAATGCTCCGGTCTTTAGCGGCGTTT-TTA-AAAG
* *
26049065 CGCCACTAATGCTCCGGTCTTTAGCAGCGTTTCTTAAAAAG
1 CGCCGCTAATGCTCCGGTCTTTAGCGGCGTTT-TT-AAAAG
26049106 CGCCGCTAA
1 CGCCGCTAA
26049115 ATACCTGAGC
Statistics
Matches: 144, Mismatches: 24, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
40 3 0.02
41 135 0.94
42 6 0.04
ACGTcount: A:0.19, C:0.26, G:0.26, T:0.30
Consensus pattern (39 bp):
CGCCGCTAATGCTCCGGTCTTTAGCGGCGTTTTTAAAAG
Found at i:26049109 original size:82 final size:81
Alignment explanation
Indices: 26048901--26049114 Score: 250
Period size: 82 Copynumber: 2.6 Consensus size: 81
26048891 TTTCAAACCA
* * * * * *
26048901 CGCCGCTAATGCTCCTGTCTTTAGTGGCGTTTTTGAATAATCGCCGCTAATGCTGCGGTCTTTAG
1 CGCCGCTAATGCTCCGGTCTTTAGCGGCGTTTTT-AAAAAGCGCCGCTAATGCTACGGTCTTCAG
*
26048966 CGGCGTTTTCTAAGATG
65 CGGCGTTTTCTAAGAAG
* * * * *
26048983 CGCTGCTAATGCTCAGGTCTTTAGCGGCGCTTTGTAAGAGGCGCCGCTAATGCTACGGTCTTCAG
1 CGCCGCTAATGCTCCGGTCTTTAGCGGCG-TTTTTAAAAAGCGCCGCTAATGCTACGGTCTTCAG
*
26049048 CGGCG-TTTCTCAGAAAG
65 CGGCGTTTTCTAAG-AAG
* *
26049065 CGCCACTAATGCTCCGGTCTTTAGCAGCGTTTCTTAAAAAGCGCCGCTAA
1 CGCCGCTAATGCTCCGGTCTTTAGCGGCGTTT-TTAAAAAGCGCCGCTAA
26049115 ATACCTGAGC
Statistics
Matches: 110, Mismatches: 19, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
81 10 0.09
82 96 0.87
83 4 0.04
ACGTcount: A:0.19, C:0.26, G:0.26, T:0.30
Consensus pattern (81 bp):
CGCCGCTAATGCTCCGGTCTTTAGCGGCGTTTTTAAAAAGCGCCGCTAATGCTACGGTCTTCAGC
GGCGTTTTCTAAGAAG
Found at i:26049130 original size:41 final size:41
Alignment explanation
Indices: 26049085--26049178 Score: 127
Period size: 41 Copynumber: 2.3 Consensus size: 41
26049075 GCTCCGGTCT
* * *
26049085 TTAGCAGCGTTTCTTA-AAAAGCGCCGCTAAATACCTGAGCA
1 TTAGCGGCGTTTCTTAGAAAA-CGCCGCTAAAGACCGGAGCA
**
26049126 TTAGCGGCGCATCTTAGAAAACGCCGCTAAAGACCGGAGCA
1 TTAGCGGCGTTTCTTAGAAAACGCCGCTAAAGACCGGAGCA
26049167 TTAGCGGCGTTT
1 TTAGCGGCGTTT
26049179 TGTAGCTAGC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
41 41 0.91
42 4 0.09
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.22
Consensus pattern (41 bp):
TTAGCGGCGTTTCTTAGAAAACGCCGCTAAAGACCGGAGCA
Found at i:26056403 original size:41 final size:41
Alignment explanation
Indices: 26056321--26056492 Score: 190
Period size: 41 Copynumber: 4.2 Consensus size: 41
26056311 TTTTACTAAA
* *
26056321 CGCCGCTAATGCTCAGGTC-TTAGCAGCGATTGTTAAAAAG
1 CGCCGCTAATGCTCAGGTCTTTAGCAGCGTTTTTTAAAAAG
**
26056361 CGCCGCTAATGCT-ACGGTCTTTAGCAGCGTTTTTTATGAAG
1 CGCCGCTAATGCTCA-GGTCTTTAGCAGCGTTTTTTAAAAAG
* **
26056402 CGTCG-TAAATGCT-ACGGTCTTTAGCAGCGTTTTTTACGAAG
1 CGCCGCT-AATGCTCA-GGTCTTTAGCAGCGTTTTTTAAAAAG
* * * *
26056443 TGCCGCTAATGCTCAGGTATTTAGCGGCGTTTCTTAAAAAG
1 CGCCGCTAATGCTCAGGTCTTTAGCAGCGTTTTTTAAAAAG
26056484 CGCCGCTAA
1 CGCCGCTAA
26056493 AAACAGCAGC
Statistics
Matches: 113, Mismatches: 14, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 18 0.16
41 92 0.81
42 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.30
Consensus pattern (41 bp):
CGCCGCTAATGCTCAGGTCTTTAGCAGCGTTTTTTAAAAAG
Found at i:26056508 original size:41 final size:41
Alignment explanation
Indices: 26056463--26056556 Score: 120
Period size: 41 Copynumber: 2.3 Consensus size: 41
26056453 GCTCAGGTAT
*
26056463 TTAGCGGCGTTTCTTA-AAAAGCGCCGCTAAA-AACAGCAGCA
1 TTAGCGGCGTTTATTAGAAAA-CGCCGCTAAAGAACAG-AGCA
** *
26056504 TTAGCGGCGCATATTAGAAAACGCCGCTAAAGACCAGAGCA
1 TTAGCGGCGTTTATTAGAAAACGCCGCTAAAGAACAGAGCA
26056545 TTAGCGGCGTTT
1 TTAGCGGCGTTT
26056557 TGTAGCTAGC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
41 37 0.82
42 8 0.18
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (41 bp):
TTAGCGGCGTTTATTAGAAAACGCCGCTAAAGAACAGAGCA
Found at i:26057548 original size:2 final size:2
Alignment explanation
Indices: 26057543--26057577 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
26057533 ATATGCCACG
*
26057543 AT AT AT AT AT GT -T AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26057578 TATGAAACAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
AT
Found at i:26060990 original size:15 final size:15
Alignment explanation
Indices: 26060970--26061000 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26060960 ACCACCAATT
*
26060970 TGTTTTCATTTGTAC
1 TGTTTTCATTTCTAC
26060985 TGTTTTCATTTCTAC
1 TGTTTTCATTTCTAC
26061000 T
1 T
26061001 TTTCCTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.16, G:0.10, T:0.61
Consensus pattern (15 bp):
TGTTTTCATTTCTAC
Found at i:26061651 original size:16 final size:16
Alignment explanation
Indices: 26061615--26061664 Score: 75
Period size: 16 Copynumber: 3.2 Consensus size: 16
26061605 ATACATACAT
26061615 TACATAACTTAT-TAA
1 TACATAACTTATATAA
*
26061630 TTCATAACTTATATAA
1 TACATAACTTATATAA
*
26061646 TACATAACTTACATAA
1 TACATAACTTATATAA
26061662 TAC
1 TAC
26061665 GACATAATAC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
15 11 0.35
16 20 0.65
ACGTcount: A:0.46, C:0.16, G:0.00, T:0.38
Consensus pattern (16 bp):
TACATAACTTATATAA
Found at i:26067027 original size:66 final size:66
Alignment explanation
Indices: 26066921--26067088 Score: 223
Period size: 66 Copynumber: 2.5 Consensus size: 66
26066911 CAAATTACAA
* * * *
26066921 AACTTAAAGCGGAGGCAACATCGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCCAGC-
1 AACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAG-TATGAAGAACTCCAGCA
26066984 GAC
65 G-C
*
26066987 AACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACGAAAGTATGAAGAACTCCAGCAG
1 AACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCAGCAG
26067052 C
66 C
* * * *
26067053 AGCTTAAAGCAGATGCGGCAGTGAGAGAAGCAGAGG
1 AACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGG
26067089 CTGCAGCGAG
Statistics
Matches: 91, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
66 86 0.95
67 5 0.05
ACGTcount: A:0.40, C:0.18, G:0.29, T:0.13
Consensus pattern (66 bp):
AACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCAGCAG
C
Found at i:26067083 original size:21 final size:21
Alignment explanation
Indices: 26067059--26067108 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
26067049 CAGCAGCTTA
* *
26067059 AAGCAGATGCGGCAGTGAGAG
1 AAGCAGAGGCGGCAGCGAGAG
* *
26067080 AAGCAGAGGCTGCAGCGAGGG
1 AAGCAGAGGCGGCAGCGAGAG
26067101 AAGCAGAG
1 AAGCAGAG
26067109 CAGCGTAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.34, C:0.16, G:0.44, T:0.06
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCGAGAG
Found at i:26067292 original size:10 final size:10
Alignment explanation
Indices: 26067279--26067315 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
26067269 AATTTTATTT
26067279 TATTTATTGA
1 TATTTATTGA
26067289 TATTTATTGA
1 TATTTATTGA
26067299 TATTTATT-A
1 TATTTATTGA
26067308 TATATTAT
1 TAT-TTAT
26067316 AGATTTATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 4 0.15
10 22 0.85
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (10 bp):
TATTTATTGA
Found at i:26067293 original size:20 final size:20
Alignment explanation
Indices: 26067270--26067315 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
26067260 AATAATACGA
*
26067270 ATTTTATT-TTATTTATTGAT
1 ATTTTATTGATATTTATT-AT
26067290 A-TTTATTGATATTTATTAT
1 ATTTTATTGATATTTATTAT
*
26067309 ATATTAT
1 ATTTTAT
26067316 AGATTTATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.65
Consensus pattern (20 bp):
ATTTTATTGATATTTATTAT
Found at i:26067469 original size:42 final size:42
Alignment explanation
Indices: 26067432--26067555 Score: 113
Period size: 43 Copynumber: 2.9 Consensus size: 42
26067422 GCGTTTTTTA
* *
26067432 AAAAACGCCACTAAAGGTAATGGTCTTTAGCGGCGTTTGTGGT
1 AAAAACGCCACTAAAGATAAGGGTCTTTAGCGGCGTTT-TGGT
* * * * *
26067475 AAAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTTATGC
1 AAAAACGCCACTAAAGATAAGGGTCTTTAGCGGCGTTTT-GGT
* * * * * *
26067518 AGAAGCGCCGCTATAGATCAGGGTATTTAGCGGCGTTT
1 AAAAACGCCACTAAAGATAAGGGTCTTTAGCGGCGTTT
26067556 GTAAGGGAAG
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
42 1 0.01
43 69 0.99
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.27
Consensus pattern (42 bp):
AAAAACGCCACTAAAGATAAGGGTCTTTAGCGGCGTTTTGGT
Found at i:26067500 original size:43 final size:41
Alignment explanation
Indices: 26067453--26067727 Score: 205
Period size: 43 Copynumber: 6.4 Consensus size: 41
26067443 TAAAGGTAAT
26067453 GGTCTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGATCAG
1 GGTCTTTAGCGGCGTTTGTGGT--AAGCGCCGCTAAAGATCAG
* *
26067496 GGTCTTTAGCGGCGTTTTATGCAG-AAGCGCCGCTATAGATCAG
1 GGTCTTTAGCGGCG-TTTGTG--GTAAGCGCCGCTAAAGATCAG
* * *
26067539 GGTATTTAGCGGCGTTTGTAAGGGAAGCGCCGCTAAAGGTC-G
1 GGTCTTTAGCGGCGTTTGT--GGTAAGCGCCGCTAAAGATCAG
* * *
26067581 TTGTCTTTAGCGGCGTTTGTTTGGTAAGCGCCGCTAAA-TTCCAT
1 -GGTCTTTAGCGGCGTTTG--TGGTAAGCGCCGCTAAAGAT-CAG
** * * * * *
26067625 GACCTTCAGCGGCGTTTGTTTTGTAAGCGCCACTAAAGACCAT
1 GGTCTTTAGCGGCGTTTG--TGGTAAGCGCCGCTAAAGATCAG
** * *
26067668 GACCTTTAGCGGCGTTTGTGTGGTAAGCGCCGCTAAAGACCAT
1 GGTCTTTAGCGGCG-TT-TGTGGTAAGCGCCGCTAAAGATCAG
**
26067711 GACCTTTAGCGGCGTTT
1 GGTCTTTAGCGGCGTTT
26067728 TTTGAAATAA
Statistics
Matches: 196, Mismatches: 22, Indels: 30
0.79 0.09 0.12
Matches are distributed among these distances:
41 1 0.01
42 9 0.05
43 174 0.89
44 8 0.04
45 3 0.02
46 1 0.01
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (41 bp):
GGTCTTTAGCGGCGTTTGTGGTAAGCGCCGCTAAAGATCAG
Found at i:26067636 original size:86 final size:86
Alignment explanation
Indices: 26067546--26067727 Score: 231
Period size: 86 Copynumber: 2.1 Consensus size: 86
26067536 CAGGGTATTT
* * ** * *
26067546 AGCGGCGTTTGTAAGGGAAGCGCCGCTAAAGGTCGTTG-TCTTTAGCGGCGTTTGTTTGGTAAGC
1 AGCGGCGTTTGTAAGGGAAGCGCCACTAAA-GACCATGACCTTTAGCGGCGTTTGTGTGGTAAGC
**
26067610 GCCGCTAAATTCCATGACCTTC
65 GCCGCTAAAGACCATGACCTTC
*** *
26067632 AGCGGCGTTTGTTTTGTAAGCGCCACTAAAGACCATGACCTTTAGCGGCGTTTGTGTGGTAAGCG
1 AGCGGCGTTTGTAAGGGAAGCGCCACTAAAGACCATGACCTTTAGCGGCGTTTGTGTGGTAAGCG
*
26067697 CCGCTAAAGACCATGACCTTT
66 CCGCTAAAGACCATGACCTTC
26067718 AGCGGCGTTT
1 AGCGGCGTTT
26067728 TTTGAAATAA
Statistics
Matches: 82, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
85 4 0.05
86 78 0.95
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (86 bp):
AGCGGCGTTTGTAAGGGAAGCGCCACTAAAGACCATGACCTTTAGCGGCGTTTGTGTGGTAAGCG
CCGCTAAAGACCATGACCTTC
Found at i:26070700 original size:30 final size:30
Alignment explanation
Indices: 26070666--26070730 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
26070656 CAACTTAACA
26070666 AACAAATGTCTCTAAAATAATAACAAAATT
1 AACAAATGTCTCTAAAATAATAACAAAATT
*
26070696 AACAAATGTCTCTACAATAATAACAAAATT
1 AACAAATGTCTCTAAAATAATAACAAAATT
26070726 AACAA
1 AACAA
26070731 TAAAATAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.57, C:0.15, G:0.03, T:0.25
Consensus pattern (30 bp):
AACAAATGTCTCTAAAATAATAACAAAATT
Found at i:26075221 original size:23 final size:22
Alignment explanation
Indices: 26075178--26075221 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
26075168 TTCTAAGTCG
26075178 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
26075201 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
26075222 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:26075332 original size:45 final size:45
Alignment explanation
Indices: 26075268--26075354 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
26075258 CAGATACTCA
* *
26075268 GTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTCCC
1 GTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCCC
26075313 GTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
1 GTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
26075355 TCAGTTCACA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (45 bp):
GTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCCC
Found at i:26075458 original size:51 final size:50
Alignment explanation
Indices: 26075376--26075505 Score: 172
Period size: 50 Copynumber: 2.6 Consensus size: 50
26075366 AGTAGCCTGA
* * *
26075376 TACACGTAGTAGCCTGCACATAGTACTACACATGTGATCGAAAC-TATCCGG
1 TACACATAGTAGCCTGCACATAGTACTACACATGCGA-CCAAACAT-TCCGG
* * *
26075427 TACGCATAGTAGCCTGCACATAGTACTACACATGCGACCTATCATTCCGG
1 TACACATAGTAGCCTGCACATAGTACTACACATGCGACCAAACATTCCGG
*
26075477 TACACGTAGTAGCCTGCACATAGTACTAC
1 TACACATAGTAGCCTGCACATAGTACTAC
26075506 GCACGTGACC
Statistics
Matches: 70, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
50 35 0.50
51 35 0.50
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (50 bp):
TACACATAGTAGCCTGCACATAGTACTACACATGCGACCAAACATTCCGG
Found at i:26075497 original size:50 final size:51
Alignment explanation
Indices: 26075376--26075505 Score: 183
Period size: 51 Copynumber: 2.6 Consensus size: 51
26075366 AGTAGCCTGA
* *
26075376 TACACGTAGTAGCCTGCACATAGTACTACACATGTGATCGAAACTATCCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACATGCGACCGAAACTATCCGG
* * * *
26075427 TACGCATAGTAGCCTGCACATAGTACTACACATGCGACC-TATC-ATTCCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACATGCGACCGAAACTA-TCCGG
26075477 TACACGTAGTAGCCTGCACATAGTACTAC
1 TACACGTAGTAGCCTGCACATAGTACTAC
26075506 GCACGTGACC
Statistics
Matches: 70, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
49 1 0.01
50 34 0.49
51 35 0.50
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (51 bp):
TACACGTAGTAGCCTGCACATAGTACTACACATGCGACCGAAACTATCCGG
Found at i:26078880 original size:50 final size:50
Alignment explanation
Indices: 26078773--26078907 Score: 189
Period size: 50 Copynumber: 2.7 Consensus size: 50
26078763 CATGCCAAAT
* ** * *
26078773 CCATGTCACAGACATGGTCTTACATGGGATGTTCTCATATCGGTGCCCATG
1 CCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATATCGGTGCCAACG
** *
26078824 CCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAACG
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACG
26078874 CCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCT
26078908 TTACCCAAAT
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 48 0.65
51 26 0.35
ACGTcount: A:0.20, C:0.30, G:0.24, T:0.26
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACG
Found at i:26082987 original size:29 final size:30
Alignment explanation
Indices: 26082945--26083148 Score: 140
Period size: 29 Copynumber: 7.0 Consensus size: 30
26082935 GTGTGTTAAA
*
26082945 CGATGGTCGTAACCATCCCTTTTCATA-TT
1 CGATGGTCGAAACCATCCCTTTTCATAGTT
*
26082974 CGATGGTCGAAACCATCCCTTTTCATTA-AT
1 CGATGGTCGAAACCATCCCTTTTCA-TAGTT
** *
26083004 C-AGTGGTCGTCACCATCCCTTTTTATAGTT
1 CGA-TGGTCGAAACCATCCCTTTTCATAGTT
* *
26083034 -GATGGTC-ATCACTATCCCTTTTCATAGTT
1 CGATGGTCGA-AACCATCCCTTTTCATAGTT
**
26083063 -GATGGTC-TCACCATCCCTTTTCATAGTT
1 CGATGGTCGAAACCATCCCTTTTCATAGTT
* * * *
26083091 -GTTGGTC-ATTACCATCCTTTTTCATA-AT
1 CGATGGTCGA-AACCATCCCTTTTCATAGTT
* * * * *
26083119 CGATAGCCGAAGCTATCCTTTTTCATAGTT
1 CGATGGTCGAAACCATCCCTTTTCATAGTT
26083149 TGACAGCCGA
Statistics
Matches: 143, Mismatches: 23, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
28 26 0.18
29 90 0.63
30 27 0.19
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.39
Consensus pattern (30 bp):
CGATGGTCGAAACCATCCCTTTTCATAGTT
Found at i:26083040 original size:59 final size:59
Alignment explanation
Indices: 26082946--26083119 Score: 205
Period size: 57 Copynumber: 3.0 Consensus size: 59
26082936 TGTGTTAAAC
*
26082946 GATGGTCGTAACCATCCCTTTTCATA-TTCGATGGTCGA-AACCATCCCTTTTCATTAATCA
1 GATGGTCGTCACCATCCCTTTTCATAGTT-GATGGTC-ATAACCATCCCTTTTCA-TAATCA
* * * * *
26083006 G-TGGTCGTCACCATCCCTTTTTATAGTTGATGGTCATCACTATCCCTTTTCATAGT-T
1 GATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCATAACCATCCCTTTTCATAATCA
* * *
26083063 GATGGTC-TCACCATCCCTTTTCATAGTTGTTGGTCATTACCATCCTTTTTCATAATC
1 GATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCATAACCATCCCTTTTCATAATC
26083120 GATAGCCGAA
Statistics
Matches: 98, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
57 44 0.45
58 9 0.09
59 42 0.43
60 3 0.03
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.40
Consensus pattern (59 bp):
GATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCATAACCATCCCTTTTCATAATCA
Found at i:26083089 original size:57 final size:57
Alignment explanation
Indices: 26082946--26083118 Score: 199
Period size: 59 Copynumber: 3.0 Consensus size: 57
26082936 TGTGTTAAAC
*
26082946 GATGGTCGTAACCATCCCTTTTCATA-TTCGATGGTCGA-AACCATCCCTTTTCATTAAT
1 GATGGTCGTCACCATCCCTTTTCATAGTT-GATGGTC-ATAACCATCCCTTTTCA-TAAT
* * * * *
26083004 CAGTGGTCGTCACCATCCCTTTTTATAGTTGATGGTCATCACTATCCCTTTTCATAGTT
1 GA-TGGTCGTCACCATCCCTTTTCATAGTTGATGGTCATAACCATCCCTTTTCATA-AT
* * *
26083063 GATGGTC-TCACCATCCCTTTTCATAGTTGTTGGTCATTACCATCCTTTTTCATAAT
1 GATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCATAACCATCCCTTTTCATAAT
26083119 CGATAGCCGA
Statistics
Matches: 98, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
56 1 0.01
57 42 0.43
58 9 0.09
59 44 0.45
60 2 0.02
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.40
Consensus pattern (57 bp):
GATGGTCGTCACCATCCCTTTTCATAGTTGATGGTCATAACCATCCCTTTTCATAAT
Found at i:26083159 original size:30 final size:29
Alignment explanation
Indices: 26083104--26083166 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 29
26083094 GGTCATTACC
*
26083104 ATCCTTTTTCATAATCGATAGCCGAAGCT
1 ATCCTTTTTCATAATCGACAGCCGAAGCT
* *
26083133 ATCCTTTTTCATAGTTTGACAGCCGAAGCT
1 ATCCTTTTTCATA-ATCGACAGCCGAAGCT
26083163 ATCC
1 ATCC
26083167 CTTTCCATTG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 13 0.43
30 17 0.57
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.35
Consensus pattern (29 bp):
ATCCTTTTTCATAATCGACAGCCGAAGCT
Found at i:26091542 original size:13 final size:13
Alignment explanation
Indices: 26091524--26091549 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26091514 CGTGTGTGAC
26091524 ACATGGCCATGTG
1 ACATGGCCATGTG
26091537 ACATGGCCATGTG
1 ACATGGCCATGTG
26091550 TCCAATGTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (13 bp):
ACATGGCCATGTG
Found at i:26093091 original size:13 final size:13
Alignment explanation
Indices: 26093075--26093099 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26093065 ATTCGAGAGA
26093075 TTTTGGAGAGAAT
1 TTTTGGAGAGAAT
26093088 TTTTGGAGAGAA
1 TTTTGGAGAGAA
26093100 AAGGTTTAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (13 bp):
TTTTGGAGAGAAT
Found at i:26093465 original size:20 final size:21
Alignment explanation
Indices: 26093437--26093475 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
26093427 TAAATTCCAA
26093437 TTTAACCAAAAA-TATTTATT
1 TTTAACCAAAAATTATTTATT
*
26093457 TTTACCCAAAAATTATTTA
1 TTTAACCAAAAATTATTTA
26093476 AAACCATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.44, C:0.13, G:0.00, T:0.44
Consensus pattern (21 bp):
TTTAACCAAAAATTATTTATT
Found at i:26095516 original size:17 final size:17
Alignment explanation
Indices: 26095491--26095523 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
26095481 TGTATACGGT
*
26095491 ATTGTTTGTTTGTATTA
1 ATTGATTGTTTGTATTA
26095508 ATTGATTGTTTGTATT
1 ATTGATTGTTTGTATT
26095524 CATTAGTGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.00, G:0.18, T:0.64
Consensus pattern (17 bp):
ATTGATTGTTTGTATTA
Found at i:26101576 original size:5 final size:5
Alignment explanation
Indices: 26101566--26101599 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
26101556 ACCAAAAATG
26101566 TGAAT TGAAT TGAAT TGAAT TGAAT ATGAAT TGA
1 TGAAT TGAAT TGAAT TGAAT TGAAT -TGAAT TGA
26101600 TGTTAAATTC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.41, C:0.00, G:0.21, T:0.38
Consensus pattern (5 bp):
TGAAT
Found at i:26110548 original size:16 final size:17
Alignment explanation
Indices: 26110527--26110558 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
26110517 TTTTAGGGGC
26110527 AAAAGTAT-AATTTTGA
1 AAAAGTATGAATTTTGA
26110543 AAAAGTATGAATTTTG
1 AAAAGTATGAATTTTG
26110559 GACTAAATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.38
Consensus pattern (17 bp):
AAAAGTATGAATTTTGA
Found at i:26114446 original size:25 final size:25
Alignment explanation
Indices: 26114402--26114449 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
26114392 ACGAATTTTC
*
26114402 TCAAAATTTTATCGGGGTAAAATCA
1 TCAAAATTTTATCGGAGTAAAATCA
26114427 TCAAAATTTTA-CAGGAGTAAAAT
1 TCAAAATTTTATC-GGAGTAAAAT
26114450 TGGGATGAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.31
Consensus pattern (25 bp):
TCAAAATTTTATCGGAGTAAAATCA
Found at i:26117283 original size:114 final size:114
Alignment explanation
Indices: 26117147--26117476 Score: 500
Period size: 114 Copynumber: 2.9 Consensus size: 114
26117137 CAATCATAGT
*
26117147 CATATCATATCATGCCATGGGTCTTAACCACATGGTCTTACACACATTCATGTACT-GTGTTCTG
1 CATATCATATCATGCCATGGGTCTTAACCACATGGTCTTACACACATTCATGTA-TAGTGTTTTG
* *
26117211 CCATTCCAGTTTCATCTTACTGGAGGCTACACTATGAACATTCATACAAC
65 CCATTCCAGTTTCATCTTACTAGAGGCTACACCATGAACATTCATACAAC
* * * **
26117261 CATATCATATCATGCCAAGGGTCTTAACCACATGGTCTTATACACATTCATGTATATTGTTTTTT
1 CATATCATATCATGCCATGGGTCTTAACCACATGGTCTTACACACATTCATGTATAGTGTTTTGC
* *
26117326 CATTCTAGTTTCATCTTACTAGAGGCTACACCATGAACATTCATACAGC
66 CATTCCAGTTTCATCTTACTAGAGGCTACACCATGAACATTCATACAAC
* * * *
26117375 CATATCATATCATGTCATGGGTATTAACCACATGGTCTTACACATATTCATGTATCGTGTTTTGC
1 CATATCATATCATGCCATGGGTCTTAACCACATGGTCTTACACACATTCATGTATAGTGTTTTGC
* *
26117440 CATTCCAGTTTTAGCTTACTAGAGGCTACACCATGAA
66 CATTCCAGTTTCATCTTACTAGAGGCTACACCATGAA
26117477 TGGTTCCAAT
Statistics
Matches: 193, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
113 1 0.01
114 192 0.99
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.35
Consensus pattern (114 bp):
CATATCATATCATGCCATGGGTCTTAACCACATGGTCTTACACACATTCATGTATAGTGTTTTGC
CATTCCAGTTTCATCTTACTAGAGGCTACACCATGAACATTCATACAAC
Found at i:26120708 original size:23 final size:23
Alignment explanation
Indices: 26120666--26120709 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
26120656 TAAATATTAT
*
26120666 TTTATTAATATTTTGCTTAGATA
1 TTTATTAATATTTTACTTAGATA
* *
26120689 TTTATTATTATTTTATTTAGA
1 TTTATTAATATTTTACTTAGA
26120710 AAAATGATAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61
Consensus pattern (23 bp):
TTTATTAATATTTTACTTAGATA
Found at i:26129091 original size:39 final size:39
Alignment explanation
Indices: 26129048--26129183 Score: 137
Period size: 39 Copynumber: 3.5 Consensus size: 39
26129038 CATGTTTCTA
* *
26129048 AGTATTGCGAAATATTCTTGAATGTTATGTGATTATATG
1 AGTATTGCGATATATGCTTGAATGTTATGTGATTATATG
* ** *
26129087 AGTATTGCGATATGTGCTTGAACATTATGTAATTATATG
1 AGTATTGCGATATATGCTTGAATGTTATGTGATTATATG
* * * * *
26129126 AGTATTGTGATACATGGTTAAATGTTTTGTGATTATATG
1 AGTATTGCGATATATGCTTGAATGTTATGTGATTATATG
* * **
26129165 TGTAATATGATATATGCTT
1 AGTATTGCGATATATGCTT
26129184 AAAAGTGAAT
Statistics
Matches: 77, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.30, C:0.05, G:0.21, T:0.44
Consensus pattern (39 bp):
AGTATTGCGATATATGCTTGAATGTTATGTGATTATATG
Found at i:26136363 original size:44 final size:44
Alignment explanation
Indices: 26136278--26136419 Score: 196
Period size: 44 Copynumber: 3.2 Consensus size: 44
26136268 CTGCAACCTA
* * * *
26136278 AGGGAGATAAGAT-TACCAGCTTCAATCTGCTCCACTACTGCTT
1 AGGGAGATAAGATCTGCCATCCTCGATCTGCTCCACTACTGCTT
*
26136321 AGGGAGATAAGATCTGCCATCCTCGATCTGCTCCACTGCTGCTT
1 AGGGAGATAAGATCTGCCATCCTCGATCTGCTCCACTACTGCTT
* * *
26136365 AGGGAGGTAAGATCTGCCATCCTCGATCTGCCCCACTATTGCTT
1 AGGGAGATAAGATCTGCCATCCTCGATCTGCTCCACTACTGCTT
*
26136409 AGGAAGATAAG
1 AGGGAGATAAG
26136420 TTCCGTAATT
Statistics
Matches: 87, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
43 13 0.15
44 74 0.85
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (44 bp):
AGGGAGATAAGATCTGCCATCCTCGATCTGCTCCACTACTGCTT
Found at i:26136648 original size:218 final size:218
Alignment explanation
Indices: 26136346--26136809 Score: 714
Period size: 218 Copynumber: 2.1 Consensus size: 218
26136336 GCCATCCTCG
* * * *
26136346 ATCTGCTCCACTGCTGCTTAGGGAGGTAAGATCTGCCATCCTCGATCTGCCCCACTATTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATATGCCATCCTCGATCTGCCCCACTACTGCTTAG
* * *
26136411 GAAGATAAGTTCCGTAATTCTTCGGCCTGCTCCGCTGCAACTTCAGGGAGATAAGACTTGATACA
66 GAAGATAAGTTCCGTAATTCTTCGGCCTGCTCCACTGCAACTTCAGGGAGATAAGACCTAATACA
* *
26136476 AACTACTCTACTGCAACTTCAGAGAGATAAGATCTTTTATTTTAATCCGCTCCAATGCAACTTCA
131 AACTACTCTACTGCAACTTCAGAGAGAAAAGATCTTTTATTTTAATCCACTCCAATGCAACTTCA
*
26136541 AGGAGATAGGATTATTGGCTTCA
196 AGGAGATAGGATTACTGGCTTCA
* * *
26136564 ATCTGCTGCACTACTGCTTAGGGAGATAAGATATGCCATCTTCGATCTGCTCCACTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATATGCCATCCTCGATCTGCCCCACTACTGCTTAG
* * * * *
26136629 GAAGATAAGATT-TGTAATTCTTCGGTCTGCTCCATTGCAACTTTAGGGAGATAAGACCTAATGC
66 GAAGATAAG-TTCCGTAATTCTTCGGCCTGCTCCACTGCAACTTCAGGGAGATAAGACCTAATAC
* * * *
26136693 GATCTACTCTACTGCAACTTCAGAGAGAAAAGATCTTTTATTTTAATCCACTCCACTTCAACTTC
130 AAACTACTCTACTGCAACTTCAGAGAGAAAAGATCTTTTATTTTAATCCACTCCAATGCAACTTC
26136758 AAGGAGATAGGATTACTGGCTTCA
195 AAGGAGATAGGATTACTGGCTTCA
26136782 ATCTGCTCCACTACTGCTTAGGGAGATA
1 ATCTGCTCCACTACTGCTTAGGGAGATA
26136810 CGATCTGTAA
Statistics
Matches: 222, Mismatches: 23, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
218 220 0.99
219 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (218 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGATATGCCATCCTCGATCTGCCCCACTACTGCTTAG
GAAGATAAGTTCCGTAATTCTTCGGCCTGCTCCACTGCAACTTCAGGGAGATAAGACCTAATACA
AACTACTCTACTGCAACTTCAGAGAGAAAAGATCTTTTATTTTAATCCACTCCAATGCAACTTCA
AGGAGATAGGATTACTGGCTTCA
Found at i:26140228 original size:65 final size:65
Alignment explanation
Indices: 26140124--26140253 Score: 251
Period size: 65 Copynumber: 2.0 Consensus size: 65
26140114 TAAAGCACAA
*
26140124 CACAACTTCTCAATGGACGAGTACCTCATTTCACAATCAGTGAATTTCTTGCTGAGGTAGTATAT
1 CACAACTTCTCAATGGACGAGTACCTCATTTCACAATCAGTGAATTTCTTGCTGAGATAGTATAT
26140189 CACAACTTCTCAATGGACGAGTACCTCATTTCACAATCAGTGAATTTCTTGCTGAGATAGTATAT
1 CACAACTTCTCAATGGACGAGTACCTCATTTCACAATCAGTGAATTTCTTGCTGAGATAGTATAT
26140254 TGCCCTTTCC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (65 bp):
CACAACTTCTCAATGGACGAGTACCTCATTTCACAATCAGTGAATTTCTTGCTGAGATAGTATAT
Found at i:26144816 original size:21 final size:21
Alignment explanation
Indices: 26144777--26144816 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26144767 ATTGCCCTAA
* *
26144777 ATTTCTCTTCAATCCATTTCC
1 ATTTCTCCTCAAACCATTTCC
*
26144798 ATTTCTCCTCAAACTATTT
1 ATTTCTCCTCAAACCATTT
26144817 TGGCAATTCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.30, G:0.00, T:0.47
Consensus pattern (21 bp):
ATTTCTCCTCAAACCATTTCC
Found at i:26149660 original size:21 final size:19
Alignment explanation
Indices: 26149610--26149660 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 19
26149600 TTTGAAGACA
*
26149610 AATTTAAATATGATAAAAC
1 AATTTAAAAATGATAAAAC
*
26149629 AACTTTGAAAATGATAACAAC
1 AA-TTTAAAAATGATAA-AAC
26149650 AATTATAAAAA
1 AATT-TAAAAA
26149661 AATATTAATG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 2 0.08
20 14 0.54
21 10 0.38
ACGTcount: A:0.59, C:0.08, G:0.06, T:0.27
Consensus pattern (19 bp):
AATTTAAAAATGATAAAAC
Found at i:26154265 original size:27 final size:27
Alignment explanation
Indices: 26154235--26154532 Score: 398
Period size: 27 Copynumber: 11.0 Consensus size: 27
26154225 GTCATTTCAT
* *
26154235 CCTATGGGGGTATTTCGATCATTTTAC
1 CCTATGGGGGTATTTCGGTCATTCTAC
* *
26154262 CCTATGGGGGTATTTTGATCATTCTAC
1 CCTATGGGGGTATTTCGGTCATTCTAC
*
26154289 CCTATGGGGGTATTTCAGTCATTCTAC
1 CCTATGGGGGTATTTCGGTCATTCTAC
26154316 CCTATGGGGGTATTTCGGTCATTCTAC
1 CCTATGGGGGTATTTCGGTCATTCTAC
* *
26154343 CCTATGGGTGTATTTCGATCATTCTAC
1 CCTATGGGGGTATTTCGGTCATTCTAC
* *
26154370 CCTATTGGAGTATTTCGGTCATTCTAC
1 CCTATGGGGGTATTTCGGTCATTCTAC
*
26154397 CCTATGGGGGTATTTCGATCATTCTAC
1 CCTATGGGGGTATTTCGGTCATTCTAC
* * *
26154424 CCTATGGGGGTATTTTGGTTATTTTAC
1 CCTATGGGGGTATTTCGGTCATTCTAC
* *
26154451 CTTATGGGGGTATTTCGGTCATTTTAC
1 CCTATGGGGGTATTTCGGTCATTCTAC
* * * * *
26154478 CCTATGAGGGTATTTTGGTTATTTTAT
1 CCTATGGGGGTATTTCGGTCATTCTAC
* *
26154505 CCTATAGGGGTATTTCGGTCATTTTAC
1 CCTATGGGGGTATTTCGGTCATTCTAC
26154532 C
1 C
26154533 TAGTTTGAGG
Statistics
Matches: 240, Mismatches: 31, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 240 1.00
ACGTcount: A:0.17, C:0.18, G:0.22, T:0.42
Consensus pattern (27 bp):
CCTATGGGGGTATTTCGGTCATTCTAC
Found at i:26156036 original size:50 final size:50
Alignment explanation
Indices: 26155928--26156262 Score: 418
Period size: 50 Copynumber: 6.6 Consensus size: 50
26155918 ATTTGGGTAA
* * * * *
26155928 AGAGATCCCATGTAAGACCATGTCTGGGACATGTCATTGGCATCATTGACATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-C--CG--A-GATG
* * *
26155984 AGAGGTCCCATGTAAGACCATGTCTAGTACATGGCGTTGGCATCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
*
26156034 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
*
26156084 AGAGGTCCTATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* *
26156134 AGAGGTCCCATGTAATACCATGTCTGGGACATGGCGTTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * * *
26156184 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCTATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * *
26156234 AGAACTCTCATGTAAGACCATATCTGGGA
1 AGAGGTCCCATGTAAGACCATGTCTGGGA
26156263 TATGACATTG
Statistics
Matches: 249, Mismatches: 30, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
50 210 0.84
51 1 0.00
53 1 0.00
56 37 0.15
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:26168592 original size:31 final size:32
Alignment explanation
Indices: 26168532--26168594 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
26168522 AAATTACAAG
26168532 AGTAATTGAATCCTAATAAAAACTATTTAAAA
1 AGTAATTGAATCCTAATAAAAACTATTTAAAA
*
26168564 AGTAATTGAATCCTAAT-AAAACTCTTTAAAA
1 AGTAATTGAATCCTAATAAAAACTATTTAAAA
26168595 TTATCTAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 13 0.43
32 17 0.57
ACGTcount: A:0.51, C:0.11, G:0.06, T:0.32
Consensus pattern (32 bp):
AGTAATTGAATCCTAATAAAAACTATTTAAAA
Done.