Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr13 ID=Chr13-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58321163
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 747533 characters in sequence are not A, C, G, or T
File 96 of 199
Found at i:29383705 original size:14 final size:15
Alignment explanation
Indices: 29383648--29383723 Score: 70
Period size: 14 Copynumber: 5.0 Consensus size: 15
29383638 CATCCAAACA
29383648 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
29383662 -CAGTAAATCATTTT
1 CCAGAAAATCATTTT
29383676 CCAGAAAAATAAATCATTTT
1 CCAG----A-AAATCATTTT
29383696 CCA-AAAATCATTTT
1 CCAGAAAATCATTTT
29383710 CCAGAAAA-CATTTT
1 CCAGAAAATCATTTT
29383724 ACTGGCAAAC
Statistics
Matches: 52, Mismatches: 2, Indels: 16
0.74 0.03 0.23
Matches are distributed among these distances:
13 7 0.13
14 24 0.46
15 8 0.15
20 13 0.25
ACGTcount: A:0.43, C:0.17, G:0.05, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:29383995 original size:15 final size:17
Alignment explanation
Indices: 29383957--29383995 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
29383947 GGTATAAACT
29383957 AAATTGTAAAATGGAGA
1 AAATTGTAAAATGGAGA
29383974 AAA--GTAAAA-GG-GA
1 AAATTGTAAAATGGAGA
29383987 AAATTGTAA
1 AAATTGTAA
29383996 TATTCAAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 6
0.77 0.00 0.23
Matches are distributed among these distances:
13 5 0.25
14 2 0.10
15 10 0.50
17 3 0.15
ACGTcount: A:0.56, C:0.00, G:0.23, T:0.21
Consensus pattern (17 bp):
AAATTGTAAAATGGAGA
Found at i:29385274 original size:6 final size:6
Alignment explanation
Indices: 29385263--29385290 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
29385253 ATGTTCCAAG
29385263 CCAAAC CCAAAC CCAAAC CCAAAC CCAA
1 CCAAAC CCAAAC CCAAAC CCAAAC CCAA
29385291 TTTCTCGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (6 bp):
CCAAAC
Found at i:29386740 original size:17 final size:17
Alignment explanation
Indices: 29386718--29386751 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
29386708 ATTAAGTTAA
* *
29386718 TTTTAAAGTTTTTTATT
1 TTTTAAAATATTTTATT
29386735 TTTTAAAATATTTTATT
1 TTTTAAAATATTTTATT
29386752 CCGTTGATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (17 bp):
TTTTAAAATATTTTATT
Found at i:29391289 original size:21 final size:22
Alignment explanation
Indices: 29391265--29391315 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
29391255 AATTTTTAAA
29391265 AATTTTAAAAATATTTAA-AAT
1 AATTTTAAAAATATTTAATAAT
** * *
29391286 AATTTTTTATATTTTTAATAAT
1 AATTTTAAAAATATTTAATAAT
29391308 AATTTTAA
1 AATTTTAA
29391316 TGATTTTTAA
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
AATTTTAAAAATATTTAATAAT
Found at i:29391308 original size:22 final size:22
Alignment explanation
Indices: 29391278--29391326 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
29391268 TTTAAAAATA
*
29391278 TTTAA-AATAATTTTTTAT-ATT
1 TTTAATAATAA-TTTTAATGATT
29391299 TTTAATAATAATTTTAATGATT
1 TTTAATAATAATTTTAATGATT
29391321 TTTAAT
1 TTTAAT
29391327 TTTTAAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 11 0.44
22 14 0.56
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (22 bp):
TTTAATAATAATTTTAATGATT
Found at i:29391340 original size:19 final size:18
Alignment explanation
Indices: 29391318--29391357 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
29391308 AATTTTAATG
*
29391318 ATTTTTAATTTTTAAAATA
1 ATTTTTAAATTTTAAAA-A
29391337 ATTTTTAAATTTTAAAAA
1 ATTTTTAAATTTTAAAAA
29391355 ATT
1 ATT
29391358 AATTAAATGC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTTTTAAATTTTAAAAA
Found at i:29391363 original size:19 final size:19
Alignment explanation
Indices: 29391322--29391365 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
29391312 TTAATGATTT
* *
29391322 TTAATTTTTAAAATAATTT
1 TTAAATTTTAAAATAATTA
29391341 TTAAATTTTAAAA-AATTAA
1 TTAAATTTTAAAATAATT-A
29391360 TTAAAT
1 TTAAAT
29391366 GCTTTAATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TTAAATTTTAAAATAATTA
Found at i:29392695 original size:2 final size:2
Alignment explanation
Indices: 29392690--29392720 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
29392680 ATTTTTTTGT
29392690 TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
29392721 CTTTTATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:29398587 original size:2 final size:2
Alignment explanation
Indices: 29398582--29398608 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
29398572 AAAAATAATC
29398582 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
29398609 ATTTTTCATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:29414052 original size:14 final size:13
Alignment explanation
Indices: 29414023--29414066 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 13
29414013 TTTTTAAGCG
29414023 AAAT-AAATAAATA
1 AAATAAAATAAA-A
29414036 AAATAAAATGAAAA
1 AAATAAAAT-AAAA
29414050 AAATAAAAATAAAA
1 AAAT-AAAATAAAA
29414064 AAA
1 AAA
29414067 ACGAAACTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
13 4 0.14
14 16 0.57
15 8 0.29
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (13 bp):
AAATAAAATAAAA
Found at i:29414066 original size:23 final size:23
Alignment explanation
Indices: 29414022--29414072 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
29414012 TTTTTTAAGC
* *
29414022 GAAATAAATAAATAAAATAAAAT
1 GAAAAAAATAAATAAAAAAAAAT
* *
29414045 GAAAAAAATAAAAATAAAAAAAAC
1 GAAAAAAATAAATA-AAAAAAAAT
29414069 GAAA
1 GAAA
29414073 CTAAGAATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 12 0.52
24 11 0.48
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (23 bp):
GAAAAAAATAAATAAAAAAAAAT
Found at i:29417395 original size:82 final size:84
Alignment explanation
Indices: 29417307--29417636 Score: 265
Period size: 82 Copynumber: 3.9 Consensus size: 84
29417297 TAAGTCTTCG
* * *
29417307 TTTGGAAACAAAATCAAGATCGAATAAAATCTATCAAATGGCGGGAATAAATCCCGAAACAGA-T
1 TTTGGAAACAAAATCAA-ATCGAATAAAATCTGTTAAACGGCGGGAATAAATCCCGAAACAGATT
29417371 T-ATTCAATTCAATTT-TAA
65 TCATTCAATTCAATTTCTAA
* *** *
29417389 TTTGGAAACAAAATCAAAACTGAATAAAATCTGTTAAACGAATGGAATAAATCCCGAAATAGATT
1 TTTGGAAACAAAATCAAATC-GAATAAAATCTGTTAAACGGCGGGAATAAATCCCGAAACAGATT
* * **
29417454 TCATTTAATTTAATTTCTTG
65 TCATTCAATTCAATTTCTAA
** * * *
29417474 TTTGGAAACTAAATAAAAAAATGGAATAAAATCTGTTGAACGGCGGGAATAAATCCCGAAACATA
1 TTTGGAAAC--AA-AATCAAATCGAATAAAATCTGTTAAACGGCGGGAATAAATCCCGAAACAGA
* * * * ***
29417539 TTTTATTTGATTTTAACACCGT--
63 TTTCA-TTCAATTCAATTTC-TAA
* * * * *
29417561 TTTGGAAATAAAATAAAAAATGGAATAAAATCTGTTGAACGGCGGGAATAACTCCCGAAACAGAT
1 TTTGGAAACAAAAT--CAAATCGAATAAAATCTGTTAAACGGCGGGAATAAATCCCGAAACAGAT
* *
29417626 TTTATTTAATT
64 TTCATTCAATT
29417637 TTAACACTCG
Statistics
Matches: 203, Mismatches: 34, Indels: 19
0.79 0.13 0.07
Matches are distributed among these distances:
81 2 0.01
82 52 0.26
83 2 0.01
84 14 0.07
85 17 0.08
86 51 0.25
87 50 0.25
88 14 0.07
89 1 0.00
ACGTcount: A:0.43, C:0.12, G:0.15, T:0.30
Consensus pattern (84 bp):
TTTGGAAACAAAATCAAATCGAATAAAATCTGTTAAACGGCGGGAATAAATCCCGAAACAGATTT
CATTCAATTCAATTTCTAA
Found at i:29417525 original size:87 final size:86
Alignment explanation
Indices: 29417301--29417700 Score: 366
Period size: 87 Copynumber: 4.7 Consensus size: 86
29417291 TTTGATTAAG
* * * * * ** *
29417301 TCTTCGTTTGGAAACAAAAT-CAAGATCGAATAAAATCTATCAAATGGCGGGAATAAATCCCGAA
1 TCTT-GTTTGGAAATAAAATAAAAAATGGAATAAAATCTGTTGAACGGCGGGAATAAATCCCGAA
* *
29417365 ACAGA--TTATTCAATTCAATT
65 ACAGATTTTATTTAATTTAATT
** * * * * ***
29417385 T-TAATTTGGAAACAAAATCAAAACT-GAATAAAATCTGTTAAACGAATGGAATAAATCCCGAAA
1 TCTTGTTTGGAAATAAAATAAAAAATGGAATAAAATCTGTTGAACGGCGGGAATAAATCCCGAAA
* *
29417448 TAGATTTCATTTAATTTAATT
66 CAGATTTTATTTAATTTAATT
29417469 TCTTGTTTGGAAACT-AAATAAAAAAATGGAATAAAATCTGTTGAACGGCGGGAATAAATCCCGA
1 TCTTGTTTGGAAA-TAAAAT-AAAAAATGGAATAAAATCTGTTGAACGGCGGGAATAAATCCCGA
* * **
29417533 AACATATTTTATTTGATTTTAACA
64 AACAGATTTTATTT-AATTTAATT
* * *
29417557 CCGT-TTTGGAAATAAAATAAAAAATGGAATAAAATCTGTTGAACGGCGGGAATAACTCCCGAAA
1 TCTTGTTTGGAAATAAAATAAAAAATGGAATAAAATCTGTTGAACGGCGGGAATAAATCCCGAAA
*
29417621 CAGATTTTATTTAATTTTAA-C
66 CAGATTTTATTTAA-TTTAATT
* * * * * * *
29417642 ACTCGCTTTGGAAATAAAATTAAAATTTGAATAAAATCTATTGAACGACGGGAATAAAT
1 TCTTG-TTTGGAAATAAAATAAAAAATGGAATAAAATCTGTTGAACGGCGGGAATAAAT
29417701 AATAAATCCC
Statistics
Matches: 259, Mismatches: 45, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
82 49 0.19
83 4 0.02
84 14 0.05
85 15 0.06
86 67 0.26
87 102 0.39
88 8 0.03
ACGTcount: A:0.43, C:0.12, G:0.14, T:0.30
Consensus pattern (86 bp):
TCTTGTTTGGAAATAAAATAAAAAATGGAATAAAATCTGTTGAACGGCGGGAATAAATCCCGAAA
CAGATTTTATTTAATTTAATT
Found at i:29417635 original size:173 final size:172
Alignment explanation
Indices: 29417389--29417700 Score: 405
Period size: 173 Copynumber: 1.8 Consensus size: 172
29417379 TCAATTTTAA
* * * *
29417389 TTTGGAAACAAAATCAAAACTGAATAAAATCTGTTAAACGAATGGAATAAATCCCGAAATAGATT
1 TTTGGAAACAAAATAAAAAATGAATAAAATCTGTTAAACGAAGGGAATAAATCCCGAAACAGATT
** * *
29417454 TCATTTAA-TTTAATTTCTTG-TTTGGAAACT-AAATAAAAAAATGGAATAAAATCTGTTGAACG
66 TCATTTAATTTTAA-CACTCGCTTTGGAAA-TAAAAT-AAAAAATGGAATAAAATCTATTGAACG
*
29417516 GCGGGAATAAATCCCGAAACATATTTTATTTGATTTTAACACCGT
128 ACGGGAATAAATCCCGAAACATATTTTATTTGATTTTAACACCGT
* * ** *
29417561 TTTGGAAATAAAATAAAAAATGGAATAAAATCTGTTGAACGGCGGGAATAACTCCCGAAACAGAT
1 TTTGGAAACAAAATAAAAAAT-GAATAAAATCTGTTAAACGAAGGGAATAAATCCCGAAACAGAT
* * * *
29417626 TTTATTTAATTTTAACACTCGCTTTGGAAATAAAATTAAAATTTGAATAAAATCTATTGAACGAC
65 TTCATTTAATTTTAACACTCGCTTTGGAAATAAAATAAAAAATGGAATAAAATCTATTGAACGAC
29417691 GGGAATAAAT
130 GGGAATAAAT
29417701 AATAAATCCC
Statistics
Matches: 118, Mismatches: 18, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
172 18 0.15
173 83 0.70
174 17 0.14
ACGTcount: A:0.43, C:0.12, G:0.15, T:0.30
Consensus pattern (172 bp):
TTTGGAAACAAAATAAAAAATGAATAAAATCTGTTAAACGAAGGGAATAAATCCCGAAACAGATT
TCATTTAATTTTAACACTCGCTTTGGAAATAAAATAAAAAATGGAATAAAATCTATTGAACGACG
GGAATAAATCCCGAAACATATTTTATTTGATTTTAACACCGT
Found at i:29418781 original size:502 final size:502
Alignment explanation
Indices: 29417839--29418826 Score: 1796
Period size: 502 Copynumber: 2.0 Consensus size: 502
29417829 CAAACTTTTC
* * *
29417839 TTTCTTTCTTTCGCCTTGGTGTCTCGTTCGTCTCGGATTAGAGAATTGCAAAATAATAAAATTTG
1 TTTCTTTCTTTCGCCTTAGTGTCTCGTTCGTCTCGAATTAGAGAATTGCAAAATAATAAAATCTG
29417904 TCTTAAGATTGTTGGACAAATAACACGTTAGCAAACAAATATATGTATAAATAAAAAACTATTTA
66 TCTTAAGATTGTTGGACAAATAACACGTTAGCAAACAAATATATGTATAAATAAAAAACTATTTA
*
29417969 TATAAAATAAAATAAAATAAATAATTTGTATTTAAAATATCAAGCATGAAAAACCAATAAATAAG
131 TATAAAATAAAATAAAATAAATAATTTGTATTTAAAATATCAAGCATGAAAAACAAATAAATAAG
* * * *
29418034 ATTAGAAAACCAGTTATCAAATAAATAATCGAATTTTACTAGATGTTGAGGCTTATTTTACACAT
196 ATTAAAAAACCAGATATCAAATAAAGAATCGAATTTTACTAGATGTTGAGGCTTATTTTACACAG
* *
29418099 TTTCTTTAAGACAAATTTGGCCGCTCCTACGGTACTTGGAGAAACGTTGGTCGATTGTCTCCCAG
261 TTTCTTTAAGACAAATTTGGCCACTCCTACGGTACTTGGAGAAACGTTGGTCGACTGTCTCCCAG
* *
29418164 GATACAACAACACGATGATCGAAGCAGTAGCACCTCTGCAGAGATTAATGAACAAACCTTGCCTT
326 GATACAACAACACGATGATCGAAGCAGTAGCACCTCTGCAAAGATTAATGAACAAACCATGCCTT
** * *
29418229 TTTCTATCATTGAAACATTGGAAAATATTGAGAGAAAAAGAGAAGAATTTTTGAGAGCAAAATAA
391 TTTCTATCACCGAAACATTGAAAAATATTGAGAGAAAAAGAGAAGAATTTTCGAGAGCAAAATAA
29418294 ACTCGGTTTTAGAGAGTCTCTCAGTGTAAAAAATTTTGTCTTGGATT
456 ACTCGGTTTTAGAGAGTCTCTCAGTGTAAAAAATTTTGTCTTGGATT
29418341 TTTCTTTCTTTCGCCTTAGTGTCTCGTTCGTCTCGAATTAGAGAATTGCAAAATAATAAAATCTG
1 TTTCTTTCTTTCGCCTTAGTGTCTCGTTCGTCTCGAATTAGAGAATTGCAAAATAATAAAATCTG
29418406 TCTTAAGATTGTTGGACAAATAACACGTTAGCAAACAAATATATGTATAAATAAAAAACTATTTA
66 TCTTAAGATTGTTGGACAAATAACACGTTAGCAAACAAATATATGTATAAATAAAAAACTATTTA
*
29418471 TATAAAATAAAATAAAATAAATAATTTGTATTTAAAATATCAAGTATGAAAAACAAATAAATAAG
131 TATAAAATAAAATAAAATAAATAATTTGTATTTAAAATATCAAGCATGAAAAACAAATAAATAAG
29418536 ATTAAAAAACCAGATATCAAATAAAGAATCGAATTTTACTAGATGTTGAGGCTTATTTTACACAG
196 ATTAAAAAACCAGATATCAAATAAAGAATCGAATTTTACTAGATGTTGAGGCTTATTTTACACAG
* *
29418601 TTTCTTTAAGACAGATTTTGCCACTCCTACGGTACTTGGAGAAACGTTGGTCGACTGTCTCCCAG
261 TTTCTTTAAGACAAATTTGGCCACTCCTACGGTACTTGGAGAAACGTTGGTCGACTGTCTCCCAG
*
29418666 GATACAACAACACGATGATTGAAGCAGTAGCACCTCTGCAAAGATTAATGAACAAACCATGCCTT
326 GATACAACAACACGATGATCGAAGCAGTAGCACCTCTGCAAAGATTAATGAACAAACCATGCCTT
29418731 TTTCTATCACCGAAACATTGAAAAATATTGAGAGAAAAAGAGAAGAATTTTCGAGAGCAAAATAA
391 TTTCTATCACCGAAACATTGAAAAATATTGAGAGAAAAAGAGAAGAATTTTCGAGAGCAAAATAA
29418796 ACTCGGTTTTAGAGAGTCTCTCAGTGTAAAA
456 ACTCGGTTTTAGAGAGTCTCTCAGTGTAAAA
29418827 TATTCTGAAG
Statistics
Matches: 466, Mismatches: 20, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
502 466 1.00
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.31
Consensus pattern (502 bp):
TTTCTTTCTTTCGCCTTAGTGTCTCGTTCGTCTCGAATTAGAGAATTGCAAAATAATAAAATCTG
TCTTAAGATTGTTGGACAAATAACACGTTAGCAAACAAATATATGTATAAATAAAAAACTATTTA
TATAAAATAAAATAAAATAAATAATTTGTATTTAAAATATCAAGCATGAAAAACAAATAAATAAG
ATTAAAAAACCAGATATCAAATAAAGAATCGAATTTTACTAGATGTTGAGGCTTATTTTACACAG
TTTCTTTAAGACAAATTTGGCCACTCCTACGGTACTTGGAGAAACGTTGGTCGACTGTCTCCCAG
GATACAACAACACGATGATCGAAGCAGTAGCACCTCTGCAAAGATTAATGAACAAACCATGCCTT
TTTCTATCACCGAAACATTGAAAAATATTGAGAGAAAAAGAGAAGAATTTTCGAGAGCAAAATAA
ACTCGGTTTTAGAGAGTCTCTCAGTGTAAAAAATTTTGTCTTGGATT
Found at i:29426865 original size:67 final size:67
Alignment explanation
Indices: 29426755--29426987 Score: 315
Period size: 68 Copynumber: 3.4 Consensus size: 67
29426745 CTATAATACG
29426755 AGCTGGGAACGTAGGTCCGCGAGCTGTTTTGGAGGTCGTGATATTAAACTGGCGAGCCTTTAGGA
1 AGCTGGGAA-GTAGG-CCGCGAGCTGTTTTGGAGGTCGTGATATTAAACTGGCGAGCCTTTAGGA
29426820 TATC
64 TATC
* ** * *
29426824 AGCTGGGAAGTAGGCC-CGTAGCTGTTTTGGAGATCACGATATTAAATTGGCGAGCCTTTAGAAT
1 AGCTGGGAAGTAGGCCGCG-AGCTGTTTTGGAGGTCGTGATATTAAACTGGCGAGCCTTTAGGAT
29426888 ATC
65 ATC
* * * * *
29426891 AACTGGGAAATATGTCCGCGAGCTATTTTGGAGGTCGTAATATTAAACTGGCGAGCCTTTAGGAT
1 AGCTGGGAAGTA-GGCCGCGAGCTGTTTTGGAGGTCGTGATATTAAACTGGCGAGCCTTTAGGAT
29426956 ATC
65 ATC
*
29426959 AGCTGGGAAGTAGGCCCGTGAGCTGTTTT
1 AGCTGGGAAGTAGG-CCGCGAGCTGTTTT
29426988 ATACTTGGGC
Statistics
Matches: 140, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
66 2 0.01
67 56 0.40
68 71 0.51
69 11 0.08
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.28
Consensus pattern (67 bp):
AGCTGGGAAGTAGGCCGCGAGCTGTTTTGGAGGTCGTGATATTAAACTGGCGAGCCTTTAGGATA
TC
Found at i:29427170 original size:71 final size:71
Alignment explanation
Indices: 29427081--29427306 Score: 344
Period size: 71 Copynumber: 3.2 Consensus size: 71
29427071 CAGCTAGATG
29427081 GGAGTTTGCAACTCTCGCTAATTGTGTTGGAGGCTGCGGTTTTGATCCTGCGAGCCTTAATGTAA
1 GGAGTTTGCAACTCTCGCTAATTGTGTTGGAGGCTGCGGTTTTGATCCTGCGAGCCTTAATGTAA
29427146 CAACTA
66 CAACTA
* * * * * * * * *
29427152 GGAGTTTGCAACTCTCGCTAACTATGTTAGAGGCTACAGTTTTGATCTTGCGAACCTTAATATGA
1 GGAGTTTGCAACTCTCGCTAATTGTGTTGGAGGCTGCGGTTTTGATCCTGCGAGCCTTAATGTAA
29427217 CAACTA
66 CAACTA
* *
29427223 GGAGTTTGTAACTCTCGCTAATTGTGTTGGAGGCTGTGGTTTTGATCCTGCGAGCCTTAATGTAA
1 GGAGTTTGCAACTCTCGCTAATTGTGTTGGAGGCTGCGGTTTTGATCCTGCGAGCCTTAATGTAA
29427288 CAACTA
66 CAACTA
*
29427294 AGAGTTTGCAACT
1 GGAGTTTGCAACT
29427307 GTTTTAGAGG
Statistics
Matches: 133, Mismatches: 22, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
71 133 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (71 bp):
GGAGTTTGCAACTCTCGCTAATTGTGTTGGAGGCTGCGGTTTTGATCCTGCGAGCCTTAATGTAA
CAACTA
Found at i:29427361 original size:21 final size:21
Alignment explanation
Indices: 29427335--29427379 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
29427325 TTAATCCTGT
*
29427335 GAGCCTTAATATGACAATTGG
1 GAGCCTTAATATGACAACTGG
29427356 GAGCCTTAATATGACAACTGG
1 GAGCCTTAATATGACAACTGG
29427377 GAG
1 GAG
29427380 TTTGTATCTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (21 bp):
GAGCCTTAATATGACAACTGG
Found at i:29427491 original size:71 final size:71
Alignment explanation
Indices: 29427356--29427940 Score: 567
Period size: 71 Copynumber: 8.3 Consensus size: 71
29427346 TGACAATTGG
** * * * * * *
29427356 GAGCCTTAATATGACAACTGGGAGTTTGTATCTCTTGCTAACTCTATTGGAGGCTACGATTTTAA
1 GAGCCTTAATATGACAGTTGGGAGTTTGTAACTCTCGCTAACTATGTTAGAGGCTGCGATTTTAA
29427421 TCCTGC
66 TCCTGC
* * * * *
29427427 AAGCCTTATTATGATAGTTGGGAGTTTGTAACTCTCGCTAACTATTTTAGAGGTTGCGGA-TTTA
1 GAGCCTTAATATGACAGTTGGGAGTTTGTAACTCTCGCTAACTATGTTAGAGGCTGC-GATTTTA
29427491 ATCCTGC
65 ATCCTGC
* * * *
29427498 GAGCCTTAATATGACAGTTGGGAGTTTGTAACTCTCGCTAATTGTGTTAGAGGATGCGATTTTGA
1 GAGCCTTAATATGACAGTTGGGAGTTTGTAACTCTCGCTAACTATGTTAGAGGCTGCGATTTTAA
29427563 TCCTGC
66 TCCTGC
* * * * *
29427569 GAGCCTTAATATGATAGTTGGGAGTTTGTAAGTCTTGCTAATTATGTTGGAGGCTGCGATTTTAA
1 GAGCCTTAATATGACAGTTGGGAGTTTGTAACTCTCGCTAACTATGTTAGAGGCTGCGATTTTAA
**
29427634 TCCTAT
66 TCCTGC
* * * * * *
29427640 GAGCCTTAATATGACAGTTGGGAGTTTGTAAATTTTGCTAACTATGTTGGAGGCTGCAATTTTGA
1 GAGCCTTAATATGACAGTTGGGAGTTTGTAACTCTCGCTAACTATGTTAGAGGCTGCGATTTTAA
*
29427705 TCCTGT
66 TCCTGC
* * ** ** * * * * * *
29427711 GAGCCTTAATGTGACAGTTGGGAATTTACAACAATCGCTAGCTGTGTTAGAGGTTGTGGTTTTGA
1 GAGCCTTAATATGACAGTTGGGAGTTTGTAACTCTCGCTAACTATGTTAGAGGCTGCGATTTTAA
29427776 T-CTCGC
66 TCCT-GC
* * * *
29427782 GAGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCACTAACTGTGTTGGAGGCTGCGATTTTAA
1 GAGCCTTAATATGACAGTTGGGAGTTTGTAACTCTCGCTAACTATGTTAGAGGCTGCGATTTTAA
*
29427847 -ACT--
66 TCCTGC
* * * * * *
29427850 ----CTTAATATGACACTTGGGAGTTTGTAGCTCTCTCTAACAATGTTAGAGGTTGCGGTTTTAA
1 GAGCCTTAATATGACAGTTGGGAGTTTGTAACTCTCGCTAACTATGTTAGAGGCTGCGATTTTAA
*
29427911 TACTGC
66 TCCTGC
* * *
29427917 AAGCCTGAATATGACAATTGGGAG
1 GAGCCTTAATATGACAGTTGGGAG
29427941 CTTTAATATG
Statistics
Matches: 426, Mismatches: 77, Indels: 22
0.81 0.15 0.04
Matches are distributed among these distances:
64 52 0.12
65 3 0.01
70 4 0.01
71 365 0.86
72 2 0.00
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.36
Consensus pattern (71 bp):
GAGCCTTAATATGACAGTTGGGAGTTTGTAACTCTCGCTAACTATGTTAGAGGCTGCGATTTTAA
TCCTGC
Found at i:29427728 original size:213 final size:213
Alignment explanation
Indices: 29427356--29427939 Score: 637
Period size: 213 Copynumber: 2.8 Consensus size: 213
29427346 TGACAATTGG
* * * * *
29427356 GAGCCTTAATATGACAACTGGGAGTTTGTATCTCTTGCTAACTCTATTGGAGGCTACGATTTTAA
1 GAGCCTTAATATGACAGCTGGGAGTTTGTAACTCTTGCTAACTATGTTGGAGGCTGCGATTTTAA
* * * * * * *
29427421 TCCTGCAAGCCTTATTATGATAGTTGGGAGTTTGTAACTCTCGCTAACTATTTTAGAGGTTGCGG
66 TCCTACAAGCCTTAATATGACAGTTGGGAGTTTGTAAATCTCGCTAACTATGTTAGAGGCTGCGA
* ** ** *
29427486 ATTTAATCCTGCGAGCCTTAATATGACAGTTGGGAGTTTGTAACTCTCGCTAATTGTGTTAGAGG
131 ATTTAATCCTGCGAGCCTTAATATGACAGTTGGGAATTTACAACAATCGCTAACTGTGTTAGAGG
29427551 ATGCGATTTTGATC-CTGC
196 ATGCGATTTTGATCTC-GC
* * * *
29427569 GAGCCTTAATATGATAGTTGGGAGTTTGTAAGTCTTGCTAATTATGTTGGAGGCTGCGATTTTAA
1 GAGCCTTAATATGACAGCTGGGAGTTTGTAACTCTTGCTAACTATGTTGGAGGCTGCGATTTTAA
** * * *
29427634 TCCTATGAGCCTTAATATGACAGTTGGGAGTTTGTAAATTTTGCTAACTATGTTGGAGGCTGC-A
66 TCCTACAAGCCTTAATATGACAGTTGGGAGTTTGTAAATCTCGCTAACTATGTTAGAGGCTGCGA
* * * *
29427698 ATTTTGATCCTGTGAGCCTTAATGTGACAGTTGGGAATTTACAACAATCGCTAGCTGTGTTAGAG
131 A-TTTAATCCTGCGAGCCTTAATATGACAGTTGGGAATTTACAACAATCGCTAACTGTGTTAGAG
* * *
29427763 GTTGTGGTTTTGATCTCGC
195 GATGCGATTTTGATCTCGC
** *
29427782 GAGCCTTAATATGACAGCTGGGAGTTTGTAACTCTCACTAACTGTGTTGGAGGCTGCGATTTTAA
1 GAGCCTTAATATGACAGCTGGGAGTTTGTAACTCTTGCTAACTATGTTGGAGGCTGCGATTTTAA
* * ** * * * *
29427847 ----AC---TCTTAATATGACACTTGGGAGTTTGTAGCTCTCTCTAACAATGTTAGAGGTTGCGG
66 TCCTACAAGCCTTAATATGACAGTTGGGAGTTTGTAAATCTCGCTAACTATGTTAGAGGCTGCGA
* * * * *
29427905 TTTTAATACTGCAAGCCTGAATATGACAATTGGGA
131 ATTTAATCCTGCGAGCCTTAATATGACAGTTGGGA
29427940 GCTTTAATAT
Statistics
Matches: 307, Mismatches: 61, Indels: 13
0.81 0.16 0.03
Matches are distributed among these distances:
206 71 0.23
209 1 0.00
212 1 0.00
213 233 0.76
214 1 0.00
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.36
Consensus pattern (213 bp):
GAGCCTTAATATGACAGCTGGGAGTTTGTAACTCTTGCTAACTATGTTGGAGGCTGCGATTTTAA
TCCTACAAGCCTTAATATGACAGTTGGGAGTTTGTAAATCTCGCTAACTATGTTAGAGGCTGCGA
ATTTAATCCTGCGAGCCTTAATATGACAGTTGGGAATTTACAACAATCGCTAACTGTGTTAGAGG
ATGCGATTTTGATCTCGC
Found at i:29427887 original size:64 final size:64
Alignment explanation
Indices: 29427786--29427910 Score: 171
Period size: 64 Copynumber: 2.0 Consensus size: 64
29427776 TCTCGCGAGC
** *
29427786 CTTAATATGACAGCTGGGAGTTTGTAACTCTCACTAACTGTGTTGGAGGCTGCGATTTTAAACT
1 CTTAATATGACAGCTGGGAGTTTGTAACTCTCACTAACAATGTTAGAGGCTGCGATTTTAAACT
* * * *
29427850 CTTAATATGACA-CTTGGGAGTTTGTAGCTCTCTCTAACAATGTTAGAGGTTGCGGTTTTAA
1 CTTAATATGACAGC-TGGGAGTTTGTAACTCTCACTAACAATGTTAGAGGCTGCGATTTTAA
29427911 TACTGCAAGC
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
63 1 0.02
64 52 0.98
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (64 bp):
CTTAATATGACAGCTGGGAGTTTGTAACTCTCACTAACAATGTTAGAGGCTGCGATTTTAAACT
Found at i:29428014 original size:92 final size:92
Alignment explanation
Indices: 29427851--29428024 Score: 217
Period size: 92 Copynumber: 1.9 Consensus size: 92
29427841 TTTTAAACTC
* * * *
29427851 TTAATATGACACTTGGGAGTTTGTAGCTCTCTCTAACAATGTTAGAGGTTGCGGTTTTAATACTG
1 TTAATATGACACTTGGGAGTTTGTAACTCTCGCTAACAATGTTAGAGGCTGCAGTTTTAATACTG
29427916 CAAGCCTGAATATGACAATTGGGAGCT
66 CAAGCCTGAATATGACAATTGGGAGCT
*** *
29427943 TTAATATGACAGC-TGGGAGTTTGTAACTCTCGCTAATTGTGTT-GAAGGCTGCAGTTTTAATCC
1 TTAATATGACA-CTTGGGAGTTTGTAACTCTCGCTAACAATGTTAG-AGGCTGCAGTTTTAATAC
* * *
29428006 TGCGAGCCTTAATGTGACA
64 TGCAAGCCTGAATATGACA
29428025 GTTGAAAGTT
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
91 1 0.01
92 67 0.97
93 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (92 bp):
TTAATATGACACTTGGGAGTTTGTAACTCTCGCTAACAATGTTAGAGGCTGCAGTTTTAATACTG
CAAGCCTGAATATGACAATTGGGAGCT
Found at i:29428294 original size:71 final size:71
Alignment explanation
Indices: 29427938--29428299 Score: 341
Period size: 71 Copynumber: 5.1 Consensus size: 71
29427928 TGACAATTGG
* * * * * * *
29427938 GAGCTTTAATATGACAGCTGGGAGTTTGTAACTCTCGCTAATTGTGTTGAAGGCTGCAGTTTTAA
1 GAGCCTTAATGTGACAGTTAGGAGTTTGTAACTCTCGCTAATTGTGTTGGAGGCTGCGGTTTTGA
*
29428003 TCCTGC
66 TCTTGC
* * * * *** *
29428009 GAGCCTTAATGTGACAGTT-GAAAGTTTGTCACTCTCGCTAACTGTGTTGGAGTCAATGATTTTG
1 GAGCCTTAATGTGACAGTTAG-GAGTTTGTAACTCTCGCTAATTGTGTTGGAGGCTGCGGTTTTG
*
29428073 ATCTTAC
65 ATCTTGC
* * * * * *
29428080 GAGCCTTAATGTGATAGTTGGGAGTTTGCAACTCTCGCTAATTGTATTGGAGGCTACGATTTTGA
1 GAGCCTTAATGTGACAGTTAGGAGTTTGTAACTCTCGCTAATTGTGTTGGAGGCTGCGGTTTTGA
*
29428145 TCTTAC
66 TCTTGC
** * * * * * *
29428151 GAGCCTTAATGTGACAACTAGAAGTTTGTAACTCTCACTAATTGTGTTGGAGGTTGTGGGTTTAA
1 GAGCCTTAATGTGACAGTTAGGAGTTTGTAACTCTCGCTAATTGTGTTGGAGGCTGCGGTTTTGA
*
29428216 TCATGC
66 TCTTGC
* * * * * *
29428222 GAGCCTTAATATGACATTTAGGAGTTTGTAACTCTCGCTAACTATGTTAGAGGCTGCGGTATTGG
1 GAGCCTTAATGTGACAGTTAGGAGTTTGTAACTCTCGCTAATTGTGTTGGAGGCTGCGGT-TTTG
29428287 A-CTTGC
65 ATCTTGC
29428293 GAGCCTT
1 GAGCCTT
29428300 TGTAATATAC
Statistics
Matches: 233, Mismatches: 55, Indels: 6
0.79 0.19 0.02
Matches are distributed among these distances:
70 1 0.00
71 228 0.98
72 4 0.02
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.35
Consensus pattern (71 bp):
GAGCCTTAATGTGACAGTTAGGAGTTTGTAACTCTCGCTAATTGTGTTGGAGGCTGCGGTTTTGA
TCTTGC
Found at i:29428296 original size:142 final size:141
Alignment explanation
Indices: 29427938--29428299 Score: 388
Period size: 142 Copynumber: 2.5 Consensus size: 141
29427928 TGACAATTGG
* * * *
29427938 GAGCTTTAATATGACAGCTGGGAGTTTGTAACTCTCGCTAATTGTGTTGAAGGCTGCAGTTTTAA
1 GAGCCTTAATATGACAGTTGGGAGTTTGTAACTCTCGCTAATTGTGTTG-AGGCTGCGGTTTTGA
* * * * *
29428003 TCCTGCGAGCCTTAATGTGACAGTTGAAAGTTTGTCACTCTCGCTAACTGTGTTGGAGTCAATGA
65 TCTTGCGAGCCTTAATGTGACACTAGAAAGTTTGTAACTCTCACTAACTGTGTTGGAGTCAATGA
* * *
29428068 TTTTGATCTTAC
130 GTTTAATCATAC
* * * * * *
29428080 GAGCCTTAATGTGATAGTTGGGAGTTTGCAACTCTCGCTAATTGTATTGGAGGCTACGATTTTGA
1 GAGCCTTAATATGACAGTTGGGAGTTTGTAACTCTCGCTAATTGTGTT-GAGGCTGCGGTTTTGA
* * **
29428145 TCTTACGAGCCTTAATGTGACAACTAG-AAGTTTGTAACTCTCACTAATTGTGTTGGAGGT-TGT
65 TCTTGCGAGCCTTAATGTGAC-ACTAGAAAGTTTGTAACTCTCACTAACTGTGTTGGA-GTCAAT
* *
29428208 GGGTTTAATCATGC
128 GAGTTTAATCATAC
* * * * *
29428222 GAGCCTTAATATGACATTTAGGAGTTTGTAACTCTCGCTAACTATGTTAGAGGCTGCGGTATTGG
1 GAGCCTTAATATGACAGTTGGGAGTTTGTAACTCTCGCTAATTGTGTT-GAGGCTGCGGT-TTTG
29428287 A-CTTGCGAGCCTT
64 ATCTTGCGAGCCTT
29428300 TGTAATATAC
Statistics
Matches: 179, Mismatches: 37, Indels: 8
0.80 0.17 0.04
Matches are distributed among these distances:
142 169 0.94
143 10 0.06
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.35
Consensus pattern (141 bp):
GAGCCTTAATATGACAGTTGGGAGTTTGTAACTCTCGCTAATTGTGTTGAGGCTGCGGTTTTGAT
CTTGCGAGCCTTAATGTGACACTAGAAAGTTTGTAACTCTCACTAACTGTGTTGGAGTCAATGAG
TTTAATCATAC
Found at i:29429024 original size:75 final size:75
Alignment explanation
Indices: 29428907--29429046 Score: 192
Period size: 75 Copynumber: 1.9 Consensus size: 75
29428897 TTTGTGGGAT
* * *
29428907 AAATGCATCTTTGATTAATATCTTGCATTAATACATTCGCAT-CTTTACAAACTTGCATTAAGTG
1 AAATGCATCTTTGATTAATATCTTGCATTAATACACTAGCATCCTTTA-AAACCTGCATTAAGTG
29428971 TCTTGTTTAAA
65 TCTTGTTTAAA
* * * * *
29428982 AAATGCATCTTTGTTTAATGTTTTGCATTAATACACTAGCATCCTTTAATACCTGCATTATGTGT
1 AAATGCATCTTTGATTAATATCTTGCATTAATACACTAGCATCCTTTAAAACCTGCATTAAGTGT
29429047 TCTTTATATT
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
75 51 0.91
76 5 0.09
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.42
Consensus pattern (75 bp):
AAATGCATCTTTGATTAATATCTTGCATTAATACACTAGCATCCTTTAAAACCTGCATTAAGTGT
CTTGTTTAAA
Found at i:29430217 original size:17 final size:18
Alignment explanation
Indices: 29430185--29430227 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
29430175 AGATCAAAGT
*
29430185 AAAAAAAATTTGAAATCC
1 AAAAAAAATTTAAAATCC
**
29430203 AAAAAAAA-TTAAAATTT
1 AAAAAAAATTTAAAATCC
29430220 AAAAAAAA
1 AAAAAAAA
29430228 ATTGATTCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.72, C:0.05, G:0.02, T:0.21
Consensus pattern (18 bp):
AAAAAAAATTTAAAATCC
Found at i:29431137 original size:21 final size:23
Alignment explanation
Indices: 29431096--29431147 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 23
29431086 AGAAGAATCA
* **
29431096 AAGAAAAATAAAAGAGTTTG-AG
1 AAGAAAAAGAAAAGAAATTGAAG
29431118 -AGAAAAAGAAAAGAAATTGAAG
1 AAGAAAAAGAAAAGAAATTGAAG
29431140 AAGAAAAA
1 AAGAAAAA
29431148 TTGAGAAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 16 0.64
22 2 0.08
23 7 0.28
ACGTcount: A:0.67, C:0.00, G:0.21, T:0.12
Consensus pattern (23 bp):
AAGAAAAAGAAAAGAAATTGAAG
Found at i:29441010 original size:75 final size:75
Alignment explanation
Indices: 29440905--29441045 Score: 187
Period size: 75 Copynumber: 1.9 Consensus size: 75
29440895 TTTTGTCGGA
* * *
29440905 TAAATGCATCTTTGATTAATGTCTTACATTAATACATTTGCAT-CTTTAGAAACTTGCATTAAGT
1 TAAATGCATCATTGATTAATGTCTTACATTAATACACTAGCATCCTTTA-AAACTTGCATTAAGT
29440969 GTCTTGTTTAT
65 GTCTTGTTTAT
* * * *
29440980 TAAATGCATCATT-ATTTAATGTTTTGCATTAATACACTAGCATCCTTTAATACTTGCATTATGT
1 TAAATGCATCATTGA-TTAATGTCTTACATTAATACACTAGCATCCTTTAAAACTTGCATTAAGT
29441044 GT
65 GT
29441046 TCTTCATATT
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
74 1 0.02
75 51 0.89
76 5 0.09
ACGTcount: A:0.30, C:0.14, G:0.11, T:0.45
Consensus pattern (75 bp):
TAAATGCATCATTGATTAATGTCTTACATTAATACACTAGCATCCTTTAAAACTTGCATTAAGTG
TCTTGTTTAT
Found at i:29442859 original size:23 final size:23
Alignment explanation
Indices: 29442833--29442881 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
29442823 TGAAAAGTTA
*
29442833 GAAGAGTGAAGAGACTTGAATAT
1 GAAGAGTGAAGAGACTTGAAGAT
29442856 GAAGAGTGAAGAGACTTGAAGAT
1 GAAGAGTGAAGAGACTTGAAGAT
29442879 GAA
1 GAA
29442882 AAGTTACACA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.45, C:0.04, G:0.33, T:0.18
Consensus pattern (23 bp):
GAAGAGTGAAGAGACTTGAAGAT
Found at i:29447504 original size:23 final size:23
Alignment explanation
Indices: 29447478--29447526 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
29447468 TGAAAAGTTA
*
29447478 GAAGAGTGAAGAGACTTGAATAT
1 GAAGAGTGAAGAGACTTGAAGAT
29447501 GAAGAGTGAAGAGACTTGAAGAT
1 GAAGAGTGAAGAGACTTGAAGAT
29447524 GAA
1 GAA
29447527 AAGTTACACA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.45, C:0.04, G:0.33, T:0.18
Consensus pattern (23 bp):
GAAGAGTGAAGAGACTTGAAGAT
Found at i:29454031 original size:22 final size:20
Alignment explanation
Indices: 29453935--29454021 Score: 97
Period size: 20 Copynumber: 4.3 Consensus size: 20
29453925 GGAGCAATTC
* *
29453935 TGACTTGTTTGAAAATCTTTT
1 TGACTTGGTT-AAAATCATTT
*
29453956 TGA--TGTGTTAAAATGATTT
1 TGACTTG-GTTAAAATCATTT
* *
29453975 TAACTTGGTTGAAATCATTT
1 TGACTTGGTTAAAATCATTT
29453995 TGACTTGGTTAAAATCATTT
1 TGACTTGGTTAAAATCATTT
29454015 TGACTTG
1 TGACTTG
29454022 ATTTTAAAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
19 12 0.22
20 38 0.69
21 5 0.09
ACGTcount: A:0.28, C:0.08, G:0.17, T:0.47
Consensus pattern (20 bp):
TGACTTGGTTAAAATCATTT
Found at i:29457631 original size:41 final size:41
Alignment explanation
Indices: 29457572--29457653 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
29457562 AGAACCAAAA
*
29457572 ATAATATCATCAATATAAATTTGAATTATTAATAAATCTTT
1 ATAATATCATCAACATAAATTTGAATTATTAATAAATCTTT
29457613 ATAATATCATCAACATAAATTTGAATTATTAATAAATCTTT
1 ATAATATCATCAACATAAATTTGAATTATTAATAAATCTTT
29457654 GTCTTTTCTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.46, C:0.09, G:0.02, T:0.43
Consensus pattern (41 bp):
ATAATATCATCAACATAAATTTGAATTATTAATAAATCTTT
Found at i:29471263 original size:21 final size:21
Alignment explanation
Indices: 29471210--29471263 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 21
29471200 AGAGCAATTC
* *
29471210 TAACTTGTTTGAAAATCATTT
1 TAACTTGGTTAAAAATCATTT
*
29471231 TGA--TGAGTTAAAAATCATTT
1 TAACTTG-GTTAAAAATCATTT
29471251 TAACTTGGTTAAA
1 TAACTTGGTTAAA
29471264 TTTATTTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
19 2 0.08
20 14 0.54
21 8 0.31
22 2 0.08
ACGTcount: A:0.37, C:0.07, G:0.13, T:0.43
Consensus pattern (21 bp):
TAACTTGGTTAAAAATCATTT
Found at i:29478984 original size:186 final size:185
Alignment explanation
Indices: 29478671--29479045 Score: 615
Period size: 186 Copynumber: 2.0 Consensus size: 185
29478661 AAATGGAAAA
*
29478671 TGAATATGGAATAAACACAGGAGGTTCCTGGGAAGTTTAATTAACCAAAAAAAATAAACTACCAC
1 TGAATATGGAATAAACACAGGAGGTTCCTAGGAAGTTTAATTAACCAAAAAAAATAAACTACCAC
* * * * * *
29478736 ACAAAGCAATTCAAAATAAAACGTTTCCTTATTGCTTTCATAGGGATTCAAATACCAAACCAAAG
66 ACAAAACAATTCAAAATAAAACATTTCCCTATTACTTTCATAAGGATTCAAACACCAAACCAAAG
*
29478801 AGTACATAAAAGCTTAATCATTGAACCATTAGGCTCATTGTTGTCATTAATTGAT
131 AGTACATAAAAGCTTAATCATTGAACCACTAGGCTCATTGTTGTCATTAATTGAT
* *
29478856 TGAATATGGAATAAATATAGGAGGTTCCTAGGAAGTTTAATTAACCAAAAAAAAATAAACTACCA
1 TGAATATGGAATAAACACAGGAGGTTCCTAGGAAGTTTAATTAACC-AAAAAAAATAAACTACCA
**
29478921 CACAAAACAATTCAAAATAAAACATTTCCCTATTACTTTCATAAGGATTTGAACACCAAACCAAA
65 CACAAAACAATTCAAAATAAAACATTTCCCTATTACTTTCATAAGGATTCAAACACCAAACCAAA
* *
29478986 GAGTACATAGAAGCTTAATCATTGAACCACTAGGCTCATTGTTGTTATTAATTGAT
130 GAGTACATAAAAGCTTAATCATTGAACCACTAGGCTCATTGTTGTCATTAATTGAT
29479042 TGAA
1 TGAA
29479046 ATTAACTTAT
Statistics
Matches: 175, Mismatches: 14, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
185 43 0.25
186 132 0.75
ACGTcount: A:0.43, C:0.16, G:0.13, T:0.28
Consensus pattern (185 bp):
TGAATATGGAATAAACACAGGAGGTTCCTAGGAAGTTTAATTAACCAAAAAAAATAAACTACCAC
ACAAAACAATTCAAAATAAAACATTTCCCTATTACTTTCATAAGGATTCAAACACCAAACCAAAG
AGTACATAAAAGCTTAATCATTGAACCACTAGGCTCATTGTTGTCATTAATTGAT
Found at i:29479552 original size:129 final size:131
Alignment explanation
Indices: 29479416--29479673 Score: 375
Period size: 132 Copynumber: 2.0 Consensus size: 131
29479406 ATATATTGTC
* **
29479416 ACAAAAAGTAATTAATTCAAGA-TTATTTTAAATATT-A-TTTTT-TTCTTAACTTATATTGGTG
1 ACAAAAAGTAATTAATTCAA-ATTTATTTTAAAGATTAATTTTTTATTCTTAACTTATATTAATG
* *
29479477 ATAATA-TAAGGTATAAATATTTTTAAAA-TTAAATATTTATATTATTTTATTTTTACTTTCTCA
65 ATAATACT-AGGTATAAAGA-TTTTAAAATTTAAA-ATTTATATTATTTTATTTTCACTTTCTCA
29479540 ATCAT
127 ATCAT
29479545 ACAAAAAGTAATTAATTCAAATTTATTTTAAAGATTAATTTTTTATTCTTAACTTATATTAATGA
1 ACAAAAAGTAATTAATTCAAATTTATTTTAAAGATTAATTTTTTATTCTTAACTTATATTAATGA
*
29479610 TAATACTAGGTATAAAGATTTTAAAATTTTAAAATTTATATTATTTTGTTTTCACTTTCTCAAT
66 TAATACTAGGTATAAAGATTTTAAAA-TTTAAAATTTATATTATTTTATTTTCACTTTCTCAAT
29479674 TATAGTATTT
Statistics
Matches: 116, Mismatches: 6, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
128 1 0.01
129 33 0.28
130 1 0.01
131 13 0.11
132 62 0.53
133 6 0.05
ACGTcount: A:0.39, C:0.07, G:0.05, T:0.49
Consensus pattern (131 bp):
ACAAAAAGTAATTAATTCAAATTTATTTTAAAGATTAATTTTTTATTCTTAACTTATATTAATGA
TAATACTAGGTATAAAGATTTTAAAATTTAAAATTTATATTATTTTATTTTCACTTTCTCAATCA
T
Found at i:29486308 original size:16 final size:16
Alignment explanation
Indices: 29486287--29486317 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
29486277 TGTTGTATTA
*
29486287 TTTTAATATTAAATAT
1 TTTTAAAATTAAATAT
29486303 TTTTAAAATTAAATA
1 TTTTAAAATTAAATA
29486318 GCATTAATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TTTTAAAATTAAATAT
Found at i:29488995 original size:5 final size:5
Alignment explanation
Indices: 29488985--29489036 Score: 61
Period size: 5 Copynumber: 10.2 Consensus size: 5
29488975 TGAAGTTTTC
* *
29488985 TCGAA TCGAA TCGAG T-GAGA TGGAA TTCGAA TCGAA TCGAA TCGAA TCGAA
1 TCGAA TCGAA TCGAA TCGA-A TCGAA -TCGAA TCGAA TCGAA TCGAA TCGAA
29489036 T
1 T
29489037 ATATTTGTTC
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
4 2 0.05
5 33 0.80
6 6 0.15
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (5 bp):
TCGAA
Found at i:29489036 original size:26 final size:26
Alignment explanation
Indices: 29488985--29489036 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
29488975 TGAAGTTTTC
* *
29488985 TCGAATCGAATCGAGTGAGATGGAAT
1 TCGAATCGAATCGAATGAGATCGAAT
29489011 TCGAATCGAATCGAATCGA-ATCGAAT
1 TCGAATCGAATCGAAT-GAGATCGAAT
29489037 ATATTTGTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (26 bp):
TCGAATCGAATCGAATGAGATCGAAT
Found at i:29489719 original size:30 final size:31
Alignment explanation
Indices: 29489680--29489739 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
29489670 GGAGGTGGGA
*
29489680 TGGGAAGGGAATAAAAGTTTTAGGGG-AAAAG
1 TGGGAAGGGAATAAAAATTTT-GGGGCAAAAG
*
29489711 TGGG-AGGGAGTAAAAATTTTGGGGCAAAA
1 TGGGAAGGGAATAAAAATTTTGGGGCAAAA
29489740 TAAAAGGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 4 0.15
30 18 0.69
31 4 0.15
ACGTcount: A:0.40, C:0.02, G:0.38, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTGGGGCAAAAG
Found at i:29493624 original size:20 final size:20
Alignment explanation
Indices: 29493596--29493639 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
29493586 CCCTTTGCTT
*
29493596 TCCTCCAAAAGTTTTACTTC
1 TCCTCCAAAAATTTTACTTC
*
29493616 TCCTTCAAAAATTTTACTTC
1 TCCTCCAAAAATTTTACTTC
29493636 -CCTC
1 TCCTC
29493640 TAAACCCCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 3 0.14
20 18 0.86
ACGTcount: A:0.25, C:0.32, G:0.02, T:0.41
Consensus pattern (20 bp):
TCCTCCAAAAATTTTACTTC
Found at i:29493893 original size:17 final size:17
Alignment explanation
Indices: 29493874--29493926 Score: 63
Period size: 18 Copynumber: 3.1 Consensus size: 17
29493864 TTTTATCTTT
29493874 AAAATATATATATTTTTA
1 AAAATA-ATATATTTTTA
* *
29493892 AAAATCACAT-TTTTTA
1 AAAATAATATATTTTTA
29493908 AAAATTAATATATTTTTA
1 AAAA-TAATATATTTTTA
29493926 A
1 A
29493927 TTTCAAAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
16 10 0.34
17 7 0.24
18 12 0.41
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (17 bp):
AAAATAATATATTTTTA
Found at i:29494375 original size:10 final size:10
Alignment explanation
Indices: 29494357--29494397 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
29494347 TTAATATTAT
29494357 AAATAATTTTA
1 AAAT-ATTTTA
29494368 AAATATTTTA
1 AAATATTTTA
29494378 AAATATTTT-
1 AAATATTTTA
*
29494387 ATATATTTTA
1 AAATATTTTA
29494397 A
1 A
29494398 TTTAATTTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
9 8 0.29
10 16 0.57
11 4 0.14
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (10 bp):
AAATATTTTA
Found at i:29494394 original size:9 final size:9
Alignment explanation
Indices: 29494349--29494397 Score: 53
Period size: 10 Copynumber: 5.1 Consensus size: 9
29494339 TTTTATGATT
*
29494349 AATATTATA
1 AATATTTTA
29494358 AATAATTTTAA
1 AAT-ATTTT-A
29494369 AATATTTTAA
1 AATATTTT-A
29494379 AATATTTTA
1 AATATTTTA
*
29494388 TATATTTTA
1 AATATTTTA
29494397 A
1 A
29494398 TTTAATTTTG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 12 0.34
10 19 0.54
11 4 0.11
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (9 bp):
AATATTTTA
Found at i:29496626 original size:13 final size:13
Alignment explanation
Indices: 29496610--29496641 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
29496600 TACCTTGAGT
29496610 CACACGACCAGAC
1 CACACGACCAGAC
29496623 CACACGACCAGAC
1 CACACGACCAGAC
29496636 CACACG
1 CACACG
29496642 CCCGTGTGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.38, C:0.47, G:0.16, T:0.00
Consensus pattern (13 bp):
CACACGACCAGAC
Found at i:29499690 original size:43 final size:43
Alignment explanation
Indices: 29499556--29499867 Score: 337
Period size: 43 Copynumber: 7.4 Consensus size: 43
29499546 AAAAAAGCCA
** * ***
29499556 CTAAAGAACA-GACCTTTAGCGGCATTTTTCTTGCAAACGCCG
1 CTAAAGAACATGACCTTTAGCGGCGCTTTCCCCACAAACGCCG
* * * * *
29499598 TTAAA-AA-ATAACCTTTAGCGACGCTTT-CCCGCAAACGCCA
1 CTAAAGAACATGACCTTTAGCGGCGCTTTCCCCACAAACGCCG
* *
29499638 CTATAGAACATGACCTTTAGCAGCGCTTTCCCCACAAACGCCG
1 CTAAAGAACATGACCTTTAGCGGCGCTTTCCCCACAAACGCCG
* ** * * *
29499681 ATTGAGAACATAACTTTTAGCGGCGCTTTTCCCACAAACGCCG
1 CTAAAGAACATGACCTTTAGCGGCGCTTTCCCCACAAACGCCG
* * *
29499724 CTAAAGAACAAGACCTTTAGCGGCGCTTTCCCCATAAACTCCG
1 CTAAAGAACATGACCTTTAGCGGCGCTTTCCCCACAAACGCCG
* *
29499767 CTAAAGAACATGACCTTTAGCGGCGCTTTTCCCACGAACGCCG
1 CTAAAGAACATGACCTTTAGCGGCGCTTTCCCCACAAACGCCG
* ** *
29499810 CTAAAGAACATAACCTTTAGCGGCGCTTTCCCCAGGAAGGCCG
1 CTAAAGAACATGACCTTTAGCGGCGCTTTCCCCACAAACGCCG
29499853 CTAAAGAACAT-ACCT
1 CTAAAGAACATGACCT
29499868 CAAAACATTG
Statistics
Matches: 226, Mismatches: 40, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
40 14 0.06
41 18 0.08
42 25 0.11
43 169 0.75
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (43 bp):
CTAAAGAACATGACCTTTAGCGGCGCTTTCCCCACAAACGCCG
Found at i:29502601 original size:78 final size:78
Alignment explanation
Indices: 29502506--29502887 Score: 492
Period size: 78 Copynumber: 4.9 Consensus size: 78
29502496 AACTAATAGT
* *
29502506 GGATAATATATGTATATACATGTATAAGTTCTTGAATTTAGTTAAAAGTATGTATGTTATATTTA
1 GGAT-ATATATGTATATACATGAATAAATTCTTGAATTTAGTTAAAAGTATGTATGTTATATTTA
29502571 TATATATAAAGTTC
65 TATATATAAAGTTC
29502585 GGATATATATGTATATACATGAATAAATTCTTGAATTTAGTTAAAAGTATGTATGTTATATTTAT
1 GGATATATATGTATATACATGAATAAATTCTTGAATTTAGTTAAAAGTATGTATGTTATATTTAT
*
29502650 ATATATAAAGTTT
66 ATATATAAAGTTC
*
29502663 GGATATATATGTATATACATGAATAAATTCTTGAATTTAGTTAAAATTATGTATGTTATATTTAT
1 GGATATATATGTATATACATGAATAAATTCTTGAATTTAGTTAAAAGTATGTATGTTATATTTAT
29502728 ATATATAAAGTTC
66 ATATATAAAGTTC
* * * *
29502741 GGATATATGTGTATATACATGAATAAGTT-TTGAATTTAGTT-AATGT-TGAATGTTATA--TAT
1 GGATATATATGTATATACATGAATAAATTCTTGAATTTAGTTAAAAGTATGTATGTTATATTTAT
* * *
29502801 GTTTACAAGAGGTTC
66 ATATATAA-A-GTTC
* ** * * * *
29502816 GAATAGGTATGTATAT--ATGAGTATAAATTCTTAGATTTTA-TTAAAAGTATGGATGTTACATA
1 GGATATATATGTATATACATGA--ATAAATTCTT-GAATTTAGTTAAAAGTATGTATGTTATATT
29502878 TATATATATA
63 TATATATATA
29502888 TATGTATAAT
Statistics
Matches: 268, Mismatches: 25, Indels: 19
0.86 0.08 0.06
Matches are distributed among these distances:
73 12 0.04
74 1 0.00
75 32 0.12
76 7 0.03
77 22 0.08
78 183 0.68
79 4 0.01
80 7 0.03
ACGTcount: A:0.38, C:0.03, G:0.15, T:0.44
Consensus pattern (78 bp):
GGATATATATGTATATACATGAATAAATTCTTGAATTTAGTTAAAAGTATGTATGTTATATTTAT
ATATATAAAGTTC
Found at i:29503125 original size:78 final size:78
Alignment explanation
Indices: 29502957--29503137 Score: 199
Period size: 78 Copynumber: 2.3 Consensus size: 78
29502947 TTATATTGAG
* * *
29502957 TATAAGTATGAAATTATATATG--TATATGTTAAATTTGAAAATGTATGTGTATACAAGTATAAG
1 TATAAGTATGAAATTATATATGTATATATGGTAAATTTGAAAATGTATATATATACAAGTATAAG
29503020 TACTTGTTTCGAA
66 TACTTGTTTCGAA
* * * * * *
29503033 TGTAAGTATAAAATTATATATGTATATATGGTAGATTTGAATATGTATATATGTACATGTATAAG
1 TATAAGTATGAAATTATATATGTATATATGGTAAATTTGAAAATGTATATATATACAAGTATAAG
* *
29503098 T-TTTGTTATTGAA
66 TACTTGTT-TCGAA
* *
29503111 -ATAGGGTATGAAATTATATAGGTATAT
1 TATA-AGTATGAAATTATATATGTATAT
29503138 GTGACATTCG
Statistics
Matches: 86, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
76 20 0.23
77 7 0.08
78 59 0.69
ACGTcount: A:0.39, C:0.02, G:0.17, T:0.42
Consensus pattern (78 bp):
TATAAGTATGAAATTATATATGTATATATGGTAAATTTGAAAATGTATATATATACAAGTATAAG
TACTTGTTTCGAA
Found at i:29503597 original size:41 final size:41
Alignment explanation
Indices: 29503535--29503767 Score: 324
Period size: 41 Copynumber: 5.7 Consensus size: 41
29503525 GGTTTTAAAA
* * *
29503535 CCTAACAGGCTAAGTGTCGGTGATTTGAACCAGGTTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAACCAGGTTATAAG
*
29503576 CCTAGCAGGCTAACTGCCGGTGATCTGAACCAGGTTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAACCAGGTTATAAG
* **
29503617 CCTAGCAGGCTAAGTGCCGGTGATCTGAACGAGCCTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAACCAGGTTATAAG
*
29503658 CCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAACCAGGTTATAAG
* * *
29503699 CCTAGCAGGCTAAGTGTCGGTGATCTGAATCAAGCTT-TAAG
1 CCTAGCAGGCTAAGTGCCGGTGATCTGAA-CCAGGTTATAAG
**
29503740 CCTAATAGGCTAAGTGCCGGTGAATCTG
1 CCTAGCAGGCTAAGTGCCGGTG-ATCTG
29503768 TTTAAATTAA
Statistics
Matches: 171, Mismatches: 19, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
41 162 0.95
42 9 0.05
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (41 bp):
CCTAGCAGGCTAAGTGCCGGTGATCTGAACCAGGTTATAAG
Found at i:29510666 original size:41 final size:41
Alignment explanation
Indices: 29510556--29510795 Score: 286
Period size: 41 Copynumber: 5.8 Consensus size: 41
29510546 TATTTCAGAC
* * ** *
29510556 TATAAGTCTACCAGGCTAAAAGCCGGTG-TACTGAATCAGGT
1 TATAAGCCTAACAGGCTAAGTGCCGGTGAT-CTGAACCAGGT
* * *
29510597 TTTAAAACCTAACAGGCTAAGTGTCGGTGATCTGAACCAGGT
1 TAT-AAGCCTAACAGGCTAAGTGCCGGTGATCTGAACCAGGT
*
29510639 TATAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAACCAGGT
1 TATAAGCCTAACAGGCTAAGTGCCGGTGATCTGAACCAGGT
* * *
29510680 TATAAGCCTATCAGGCTAAGTGCTGGTGATCTGAACCAGGC
1 TATAAGCCTAACAGGCTAAGTGCCGGTGATCTGAACCAGGT
* * *
29510721 TATAAGCCTAGCAGGCTAAGTGCTGGTGATCTGAATCAGGCT
1 TATAAGCCTAACAGGCTAAGTGCCGGTGATCTGAACCAGG-T
*
29510763 T-TAAGCCTAACAGGTTAAGTGCCGGTGAATCTG
1 TATAAGCCTAACAGGCTAAGTGCCGGTG-ATCTG
29510796 TTTAAATTAA
Statistics
Matches: 174, Mismatches: 21, Indels: 7
0.86 0.10 0.03
Matches are distributed among these distances:
41 136 0.78
42 37 0.21
43 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (41 bp):
TATAAGCCTAACAGGCTAAGTGCCGGTGATCTGAACCAGGT
Found at i:29513091 original size:19 final size:20
Alignment explanation
Indices: 29513067--29513104 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
29513057 ACACACTTCA
29513067 AATTAATTAATC-TAAAATG
1 AATTAATTAATCATAAAATG
*
29513086 AATTAATTATTCATAAAAT
1 AATTAATTAATCATAAAAT
29513105 TATTATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (20 bp):
AATTAATTAATCATAAAATG
Found at i:29519764 original size:26 final size:26
Alignment explanation
Indices: 29519728--29519794 Score: 116
Period size: 26 Copynumber: 2.6 Consensus size: 26
29519718 CTTACTGTTT
*
29519728 CACACTGATTTTCTTGTGATTGGACG
1 CACACTGATTTTCTTGTGATTGAACG
29519754 CACACTGATTTTCTTGTGATTGAACG
1 CACACTGATTTTCTTGTGATTGAACG
*
29519780 CACACTGAGTTTCTT
1 CACACTGATTTTCTT
29519795 ATGCTCACCC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.39
Consensus pattern (26 bp):
CACACTGATTTTCTTGTGATTGAACG
Found at i:29521634 original size:23 final size:22
Alignment explanation
Indices: 29521582--29521637 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
29521572 TGTAGTGTGA
* *
29521582 GTATGTTTATATTATTTTGCAC
1 GTATGTTTATTTTATTTTGAAC
*
29521604 GTATGTTTATTTTATTTTGAAGT
1 GTATGTTTATTTTATTTTGAA-C
29521627 GTATGTTTATT
1 GTATGTTTATT
29521638 AAGATAGCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 19 0.63
23 11 0.37
ACGTcount: A:0.21, C:0.04, G:0.16, T:0.59
Consensus pattern (22 bp):
GTATGTTTATTTTATTTTGAAC
Found at i:29524400 original size:17 final size:16
Alignment explanation
Indices: 29524363--29524409 Score: 55
Period size: 17 Copynumber: 3.1 Consensus size: 16
29524353 AAAATAGTTT
29524363 ATTTCAA-TT-AT-TA
1 ATTTCAATTTAATATA
*
29524376 ATTTCAATTTCATATA
1 ATTTCAATTTAATATA
29524392 ATATTCAATTTAATATA
1 AT-TTCAATTTAATATA
29524409 A
1 A
29524410 ATTTATCCCT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 7 0.24
14 2 0.07
15 2 0.07
16 4 0.14
17 14 0.48
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (16 bp):
ATTTCAATTTAATATA
Found at i:29527025 original size:48 final size:48
Alignment explanation
Indices: 29526934--29527027 Score: 116
Period size: 48 Copynumber: 2.0 Consensus size: 48
29526924 AAATGTTTGA
* * * **
29526934 TACAAGTTTATGCAAATATACGTGCCTATCAAGTCCATTCAAATATGT
1 TACAAGTTCATGCAAATATACGTGACAATCAAGTCCACGCAAATATGT
* **
29526982 TACATGTTCATGCAAATATACGTGACAATCAAGTTTACGCAAATAT
1 TACAAGTTCATGCAAATATACGTGACAATCAAGTCCACGCAAATAT
29527028 ATATAAATAA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 38 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (48 bp):
TACAAGTTCATGCAAATATACGTGACAATCAAGTCCACGCAAATATGT
Found at i:29527128 original size:67 final size:67
Alignment explanation
Indices: 29527020--29527153 Score: 223
Period size: 67 Copynumber: 2.0 Consensus size: 67
29527010 TCAAGTTTAC
* *
29527020 GCAAATATATATAAATAATTGAAGTTAATACAAGAATGGAAATTCAATACAAAATGAGATACATA
1 GCAAATATATATAAATAATTGAAGTTAAAACAAGAATGGAAATTCAATAAAAAATGAGATACATA
29527085 AT
66 AT
* * *
29527087 GCAAATATATGTAAATAATTGAAGTTAAAACAATAATGGAAATTCAATAAAAAATGGGATACATA
1 GCAAATATATATAAATAATTGAAGTTAAAACAAGAATGGAAATTCAATAAAAAATGAGATACATA
29527152 AT
66 AT
29527154 TCATATTCTA
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 62 1.00
ACGTcount: A:0.54, C:0.07, G:0.13, T:0.27
Consensus pattern (67 bp):
GCAAATATATATAAATAATTGAAGTTAAAACAAGAATGGAAATTCAATAAAAAATGAGATACATA
AT
Found at i:29531858 original size:12 final size:12
Alignment explanation
Indices: 29531839--29531877 Score: 60
Period size: 13 Copynumber: 3.1 Consensus size: 12
29531829 AGATAATTAA
29531839 ATTTTTTTAATAT
1 ATTTTTTTAAT-T
29531852 ATTTTTTTAATT
1 ATTTTTTTAATT
29531864 ATTTATTTTAATT
1 ATTT-TTTTAATT
29531877 A
1 A
29531878 ATACATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 5 0.20
13 20 0.80
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
ATTTTTTTAATT
Found at i:29532678 original size:18 final size:17
Alignment explanation
Indices: 29532638--29532691 Score: 54
Period size: 18 Copynumber: 3.0 Consensus size: 17
29532628 AAATCATATA
*
29532638 AAAATTAAAATTATTAAT
1 AAAATTAAAATAATT-AT
*
29532656 TAAATATAAAATAATTAT
1 AAAAT-TAAAATAATTAT
*
29532674 AAAATTTAAAATGATTAT
1 AAAA-TTAAAATAATTAT
29532692 TTTAGTAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
18 20 0.67
19 10 0.33
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (17 bp):
AAAATTAAAATAATTAT
Found at i:29534851 original size:29 final size:28
Alignment explanation
Indices: 29534791--29534851 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 28
29534781 TAATTAATTT
**
29534791 TTTTAAAATTTAAAAATATTTTTATACT
1 TTTTAAAATTTAAAAATATTTTTATAAA
*
29534819 TTTTAATAATTTAAATACTA-TTTTATAAA
1 TTTTAA-AATTTAAA-AATATTTTTATAAA
29534848 TTTT
1 TTTT
29534852 TTGAACTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 6 0.21
29 19 0.68
30 3 0.11
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (28 bp):
TTTTAAAATTTAAAAATATTTTTATAAA
Found at i:29556820 original size:30 final size:29
Alignment explanation
Indices: 29556786--29556858 Score: 80
Period size: 29 Copynumber: 2.5 Consensus size: 29
29556776 TTAACGACTC
29556786 AGTGACTAAAATGTTACAACATGTT-AACAT-
1 AGTGACTAAAATGTTA-AA-AT-TTAAACATA
*
29556816 AGTGACTAAAACG-TAAAATTTCAAACATA
1 AGTGACTAAAATGTTAAAATTT-AAACATA
29556845 AGTGACTAAAATGT
1 AGTGACTAAAATGT
29556859 AACTTAAGGT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
26 2 0.05
27 2 0.05
28 7 0.19
29 14 0.38
30 12 0.32
ACGTcount: A:0.47, C:0.12, G:0.14, T:0.27
Consensus pattern (29 bp):
AGTGACTAAAATGTTAAAATTTAAACATA
Found at i:29556948 original size:14 final size:14
Alignment explanation
Indices: 29556929--29556960 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
29556919 GTGTCATTAG
29556929 TTTTTCTTCTTTTC
1 TTTTTCTTCTTTTC
*
29556943 TTTTTCTTTTTTTC
1 TTTTTCTTCTTTTC
29556957 TTTT
1 TTTT
29556961 CTACCGTGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTTCTTCTTTTC
Found at i:29563728 original size:23 final size:23
Alignment explanation
Indices: 29563693--29563770 Score: 95
Period size: 23 Copynumber: 3.4 Consensus size: 23
29563683 TGCATTGTAT
* *
29563693 TGCCAGTATCAATCGCACCAAAG
1 TGCCAATAACAATCGCACCAAAG
* *
29563716 TGCCAATCACAATCGCACGAAAG
1 TGCCAATAACAATCGCACCAAAG
29563739 TGCCAATAACAA-CAGCACCAAAG
1 TGCCAATAACAATC-GCACCAAAG
*
29563762 TGTCAATAA
1 TGCCAATAA
29563771 GCTCCCACAA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
22 1 0.02
23 46 0.98
ACGTcount: A:0.41, C:0.28, G:0.15, T:0.15
Consensus pattern (23 bp):
TGCCAATAACAATCGCACCAAAG
Found at i:29564867 original size:12 final size:12
Alignment explanation
Indices: 29564850--29564899 Score: 64
Period size: 12 Copynumber: 4.2 Consensus size: 12
29564840 ACAAGTTACA
*
29564850 TACGTACGTATG
1 TACGTATGTATG
29564862 TACGTATGTATG
1 TACGTATGTATG
*
29564874 TATGTATGTATG
1 TACGTATGTATG
* *
29564886 TATGTATATATG
1 TACGTATGTATG
29564898 TA
1 TA
29564900 TTAGTCATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 35 1.00
ACGTcount: A:0.28, C:0.06, G:0.22, T:0.44
Consensus pattern (12 bp):
TACGTATGTATG
Found at i:29564872 original size:4 final size:4
Alignment explanation
Indices: 29564857--29564900 Score: 70
Period size: 4 Copynumber: 11.0 Consensus size: 4
29564847 ACATACGTAC
* *
29564857 GTAT GTAC GTAT GTAT GTAT GTAT GTAT GTAT GTAT ATAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
29564901 TAGTCATTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.27, C:0.02, G:0.23, T:0.48
Consensus pattern (4 bp):
GTAT
Found at i:29574618 original size:20 final size:20
Alignment explanation
Indices: 29574593--29574631 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
29574583 TAAAAGAAAT
29574593 GTTTAATTAATGCAATAATG
1 GTTTAATTAATGCAATAATG
29574613 GTTTAATTAATGCAATAAT
1 GTTTAATTAATGCAATAAT
29574632 TATTAATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.05, G:0.13, T:0.41
Consensus pattern (20 bp):
GTTTAATTAATGCAATAATG
Found at i:29576964 original size:19 final size:19
Alignment explanation
Indices: 29576940--29576977 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
29576930 ACCACTGTCA
29576940 CCCACCATAATCAAATTTG
1 CCCACCATAATCAAATTTG
*
29576959 CCCACCGTAATCAAATTTG
1 CCCACCATAATCAAATTTG
29576978 TTATTAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.32, G:0.08, T:0.26
Consensus pattern (19 bp):
CCCACCATAATCAAATTTG
Found at i:29577621 original size:20 final size:20
Alignment explanation
Indices: 29577592--29577652 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 20
29577582 ATTAAAAGTC
29577592 AAAAAATATATATATTTAAT
1 AAAAAATATATATATTTAAT
* *
29577612 AAAAAGTATATTTGA-TTAA-
1 AAAAAATATATAT-ATTTAAT
*
29577631 AAATAAAAATATATATTTAAT
1 AAA-AAATATATATATTTAAT
29577652 A
1 A
29577653 TATAATTCGG
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
19 4 0.12
20 26 0.81
21 2 0.06
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (20 bp):
AAAAAATATATATATTTAAT
Found at i:29578010 original size:9 final size:9
Alignment explanation
Indices: 29577996--29578089 Score: 107
Period size: 9 Copynumber: 10.4 Consensus size: 9
29577986 TTTGGTTAAA
*
29577996 AATTAACCT
1 AATTAACCG
29578005 AATTAACCG
1 AATTAACCG
**
29578014 AATTAACTA
1 AATTAACCG
*
29578023 AATTACCCG
1 AATTAACCG
29578032 AATTAACCG
1 AATTAACCG
*
29578041 AATTACCCG
1 AATTAACCG
29578050 AATTAACCG
1 AATTAACCG
* *
29578059 AATTATCCA
1 AATTAACCG
*
29578068 AATTACCCG
1 AATTAACCG
*
29578077 AATTAACTG
1 AATTAACCG
29578086 AATT
1 AATT
29578090 GAATCACTAC
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
9 70 1.00
ACGTcount: A:0.43, C:0.22, G:0.07, T:0.28
Consensus pattern (9 bp):
AATTAACCG
Found at i:29580268 original size:21 final size:23
Alignment explanation
Indices: 29580242--29580283 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
29580232 ATATTTTAAG
*
29580242 GTGTAATGAT-GATGG-GTAAAA
1 GTGTAAAGATGGATGGTGTAAAA
29580263 GTGTAAAGATGGATGGTGTAA
1 GTGTAAAGATGGATGGTGTAA
29580284 CACTCCTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 5 0.28
23 4 0.22
ACGTcount: A:0.36, C:0.00, G:0.36, T:0.29
Consensus pattern (23 bp):
GTGTAAAGATGGATGGTGTAAAA
Found at i:29582546 original size:21 final size:21
Alignment explanation
Indices: 29582517--29582557 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
29582507 CGAACACGCC
* * *
29582517 AACAGAAGCTCCTAAGAGCTG
1 AACAAAAGCTCATAAAAGCTG
29582538 AACAAAAGCTCATAAAAGCT
1 AACAAAAGCTCATAAAAGCT
29582558 AATGCACTTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.22, G:0.17, T:0.15
Consensus pattern (21 bp):
AACAAAAGCTCATAAAAGCTG
Found at i:29585075 original size:28 final size:27
Alignment explanation
Indices: 29584986--29585083 Score: 88
Period size: 28 Copynumber: 3.4 Consensus size: 27
29584976 AAATTAGAGC
* *
29584986 GCTTATCGTATTATTTCGCACTTCGGT
1 GCTTATCTTATTATTTTGCACTTCGGT
** * *
29585013 GCTTATCGTTGTAAAACTTTGCACTTTGGT
1 GCTTATC--T-TATTATTTTGCACTTCGGT
*
29585043 TCTTATCATTATTATTTTGCACTTCGGT
1 GCTTATC-TTATTATTTTGCACTTCGGT
29585071 GCTTATCGTTATT
1 GCTTATC-TTATT
29585084 TACACTTTGT
Statistics
Matches: 54, Mismatches: 14, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
27 7 0.13
28 26 0.48
29 1 0.02
30 20 0.37
ACGTcount: A:0.17, C:0.18, G:0.16, T:0.48
Consensus pattern (27 bp):
GCTTATCTTATTATTTTGCACTTCGGT
Found at i:29585351 original size:77 final size:77
Alignment explanation
Indices: 29585235--29585379 Score: 272
Period size: 77 Copynumber: 1.9 Consensus size: 77
29585225 AATGGAATGT
*
29585235 ACAATTTTATAAAATTGTTGAACTCTAGGGACTAATTTGATATGAATGATATGTCTATAAAATGG
1 ACAATTTTAGAAAATTGTTGAACTCTAGGGACTAATTTGATATGAATGATATGTCTATAAAATGG
29585300 ATAATGGAAATA
66 ATAATGGAAATA
*
29585312 ACAATTTTAGAAAATTGTTGAACTCTAGGGACTAATTTGATATGAATTATATGTCTATAAAATGG
1 ACAATTTTAGAAAATTGTTGAACTCTAGGGACTAATTTGATATGAATGATATGTCTATAAAATGG
29585377 ATA
66 ATA
29585380 TAATTTTATT
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
77 66 1.00
ACGTcount: A:0.41, C:0.07, G:0.17, T:0.36
Consensus pattern (77 bp):
ACAATTTTAGAAAATTGTTGAACTCTAGGGACTAATTTGATATGAATGATATGTCTATAAAATGG
ATAATGGAAATA
Found at i:29596156 original size:31 final size:31
Alignment explanation
Indices: 29596118--29596180 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
29596108 TGGTTATGTA
29596118 ATTCAAAGAAGGAACCATAAGTGTGAAGCTT
1 ATTCAAAGAAGGAACCATAAGTGTGAAGCTT
29596149 ATTCAAAGAAGGAACCATAAGTGTGAAGCTT
1 ATTCAAAGAAGGAACCATAAGTGTGAAGCTT
29596180 A
1 A
29596181 GGTTATCTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.22
Consensus pattern (31 bp):
ATTCAAAGAAGGAACCATAAGTGTGAAGCTT
Found at i:29599190 original size:16 final size:15
Alignment explanation
Indices: 29599165--29599211 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
29599155 TATAATTTAA
29599165 TAAAATTCTTAACAT
1 TAAAATTCTTAACAT
*
29599180 TAAATATTCTT-ATA-
1 TAAA-ATTCTTAACAT
29599194 T-AAATTCTTAACAT
1 TAAAATTCTTAACAT
29599208 TAAA
1 TAAA
29599212 TATAATTGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
12 6 0.23
13 4 0.15
14 2 0.08
15 8 0.31
16 6 0.23
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.43
Consensus pattern (15 bp):
TAAAATTCTTAACAT
Found at i:29599211 original size:14 final size:14
Alignment explanation
Indices: 29599167--29599212 Score: 51
Period size: 12 Copynumber: 3.3 Consensus size: 14
29599157 TAATTTAATA
29599167 AAATTCTTAACATT
1 AAATTCTTAACATT
*
29599181 AAATATTCTT-ATA-T
1 -AA-ATTCTTAACATT
29599195 AAATTCTTAACATT
1 AAATTCTTAACATT
29599209 AAAT
1 AAAT
29599213 ATAATTGTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
12 6 0.23
13 4 0.15
14 6 0.23
15 4 0.15
16 6 0.23
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (14 bp):
AAATTCTTAACATT
Found at i:29602419 original size:22 final size:23
Alignment explanation
Indices: 29602392--29602436 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
29602382 AGGTATCTAC
29602392 AAATCAAATC-TCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
*
29602414 AAATCATATCTTCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
29602437 TATCATATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.47, C:0.18, G:0.04, T:0.31
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTACA
Found at i:29602441 original size:22 final size:22
Alignment explanation
Indices: 29602389--29602446 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
29602379 AAAAGGTATC
*
29602389 TACAAATCAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
29602410 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
29602433 TACATATCATATCT
1 TACAAATCATATCT
29602447 AAGATTGCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 3 0.09
22 19 0.58
23 11 0.33
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:29602449 original size:19 final size:20
Alignment explanation
Indices: 29602402--29602459 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 20
29602392 AAATCAAATC
*
29602402 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-ATATCATA--T
29602425 TCTAAGATTACATATCATA-
1 TCTAAGATTACATATCATAT
*
29602444 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
29602460 CTCAAAGGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.45
22 7 0.21
23 11 0.33
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (20 bp):
TCTAAGATTACATATCATAT
Found at i:29602679 original size:5 final size:5
Alignment explanation
Indices: 29602669--29602697 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
29602659 GATAGAATTT
29602669 GAATC GAATC GAATC GAATC GAATC GAAT
1 GAATC GAATC GAATC GAATC GAATC GAAT
29602698 ATATTTGTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.41, C:0.17, G:0.21, T:0.21
Consensus pattern (5 bp):
GAATC
Found at i:29602831 original size:29 final size:29
Alignment explanation
Indices: 29602799--29602855 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
29602789 AAAAAGCCTT
*
29602799 TTTTTTCAA-AATTTACCGAAATGGGCCAC
1 TTTTTT-AATAATTTACCGAAATGAGCCAC
* *
29602828 TTTTTTAATTATTTACCGGAATGAGCCA
1 TTTTTTAATAATTTACCGAAATGAGCCA
29602856 ATTCCGCGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 2 0.08
29 22 0.92
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.39
Consensus pattern (29 bp):
TTTTTTAATAATTTACCGAAATGAGCCAC
Found at i:29603120 original size:22 final size:22
Alignment explanation
Indices: 29603095--29603147 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
29603085 TTCTCTTAAA
**
29603095 CTCTCAAATT-CTTTCCAAAAT
1 CTCTCAAATTCCTTTAAAAAAT
*
29603116 CCTCTCAATTTCCTTTAAAAAAT
1 -CTCTCAAATTCCTTTAAAAAAT
29603139 CTCTCAAAT
1 CTCTCAAAT
29603148 CCATATTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
22 17 0.65
23 9 0.35
ACGTcount: A:0.34, C:0.28, G:0.00, T:0.38
Consensus pattern (22 bp):
CTCTCAAATTCCTTTAAAAAAT
Found at i:29603225 original size:18 final size:20
Alignment explanation
Indices: 29603198--29603236 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
29603188 AGAAAATGTT
*
29603198 AAAT-ATTTTTAT-TTTTTA
1 AAATAATTTTAATATTTTTA
29603216 AAATAATTTTAATATTTTTA
1 AAATAATTTTAATATTTTTA
29603236 A
1 A
29603237 TATTTTCAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 7 0.39
20 7 0.39
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
AAATAATTTTAATATTTTTA
Found at i:29603229 original size:27 final size:28
Alignment explanation
Indices: 29603181--29603235 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
29603171 TCAATTTCAT
29603181 TTTTTTAAGAAAATGTTAAATATTTTTA
1 TTTTTTAAGAAAATGTTAAATATTTTTA
*
29603209 TTTTTTAA-AATAAT-TTTAATATTTTTA
1 TTTTTTAAGAA-AATGTTAAATATTTTTA
29603236 ATATTTTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 14 0.56
28 11 0.44
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (28 bp):
TTTTTTAAGAAAATGTTAAATATTTTTA
Found at i:29603362 original size:14 final size:15
Alignment explanation
Indices: 29603333--29603366 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
29603323 AAATTTTAAA
29603333 TTTTATTTAAGATAT
1 TTTTATTTAAGATAT
*
29603348 TTTTATTTATG-TAT
1 TTTTATTTAAGATAT
29603362 TTTTA
1 TTTTA
29603367 GATAATTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (15 bp):
TTTTATTTAAGATAT
Found at i:29605585 original size:29 final size:29
Alignment explanation
Indices: 29605512--29606176 Score: 852
Period size: 29 Copynumber: 23.3 Consensus size: 29
29605502 ATTATTTGAC
29605512 TAAAAACCCTAA-CCTAATTTAATTTAAT
1 TAAAAACCCTAACCCTAATTTAATTTAAT
*
29605540 TAAAAACCC-AAACCTAATTTAATTTAAT
1 TAAAAACCCTAACCCTAATTTAATTTAAT
29605568 TAAAAACCCTAACCCTAATTTAATTTAAT
1 TAAAAACCCTAACCCTAATTTAATTTAAT
*
29605597 TAAAAACACTAACCCTAATTTAATTTAAT
1 TAAAAACCCTAACCCTAATTTAATTTAAT
* *
29605626 TAAAAACCCTAATCCTAGTTTAATTTAAT
1 TAAAAACCCTAACCCTAATTTAATTTAAT
*
29605655 TAAAAACCCTAACCCTAGTTTAATTTAAT
1 TAAAAACCCTAACCCTAATTTAATTTAAT
* **
29605684 T-AAAACCTTAAACCCTAACCTAATTTAAT
1 TAAAAACCCT-AACCCTAATTTAATTTAAT
29605713 T-AAAACCCTAACCCTAATTTAATTTAAT
1 TAAAAACCCTAACCCTAATTTAATTTAAT
* *
29605741 T-AAAACCCTAACCCTAACCCTAACCCATTTTAAT
1 TAAAAACCCTAACCCTAA--TTTA---A-TTTAAT
*
29605775 TAAAAACCCTAACCCTAGTTTAATTTAAT
1 TAAAAACCCTAACCCTAATTTAATTTAAT
29605804 TAAAAACCCTAACCCTAATTTAATTTAAT
1 TAAAAACCCTAACCCTAATTTAATTTAAT
**
29605833 T-AAAACCCTAAACCCTAACCTAATTTAAT
1 TAAAAACCCT-AACCCTAATTTAATTTAAT
*
29605862 TAAAAACCCTAACCCTAGTTTAATTTAAT
1 TAAAAACCCTAACCCTAATTTAATTTAAT
29605891 TAAAAACCCTAACCCTAATTTAATTTAAT
1 TAAAAACCCTAACCCTAATTTAATTTAAT
*
29605920 TAAAAACCCTAACCCTAGTTTAATTTAAT
1 TAAAAACCCTAACCCTAATTTAATTTAAT
**
29605949 T-AAAACCCTAAACCCTAACCTAATTTAAT
1 TAAAAACCCT-AACCCTAATTTAATTTAAT
*
29605978 T-AAAACCCTAACTCTAATTTAATTTAAT
1 TAAAAACCCTAACCCTAATTTAATTTAAT
*
29606006 TAAAAATCCTAA-CC-----TAATTTAAT
1 TAAAAACCCTAACCCTAATTTAATTTAAT
* *
29606029 T-AAAACCCTAAACCCTAACTTAATTTGAT
1 TAAAAACCCT-AACCCTAATTTAATTTAAT
29606058 TAAAAACCCTAACCCTAATTTAATTTAAT
1 TAAAAACCCTAACCCTAATTTAATTTAAT
**
29606087 T-AAAACCCTAAACCCTAACCTAATTTAAT
1 TAAAAACCCT-AACCCTAATTTAATTTAAT
29606116 TAAAAACCCTAACCC--A--T--TTTAAT
1 TAAAAACCCTAACCCTAATTTAATTTAAT
**
29606139 TAAAAACCCTAACCCTAAACTAATTTAAT
1 TAAAAACCCTAACCCTAATTTAATTTAAT
29606168 TAAAAACCC
1 TAAAAACCC
29606177 ATTTTAATTA
Statistics
Matches: 567, Mismatches: 40, Indels: 59
0.85 0.06 0.09
Matches are distributed among these distances:
22 7 0.01
23 33 0.06
24 2 0.00
25 2 0.00
27 4 0.01
28 117 0.21
29 350 0.62
30 27 0.05
33 3 0.01
34 7 0.01
35 15 0.03
ACGTcount: A:0.44, C:0.22, G:0.01, T:0.32
Consensus pattern (29 bp):
TAAAAACCCTAACCCTAATTTAATTTAAT
Found at i:29605732 original size:23 final size:22
Alignment explanation
Indices: 29605693--29605736 Score: 79
Period size: 23 Copynumber: 2.0 Consensus size: 22
29605683 TTAAAACCTT
29605693 AAACCCTAACCTAATTTAATTA
1 AAACCCTAACCTAATTTAATTA
29605715 AAACCCTAACCCTAATTTAATT
1 AAACCCTAA-CCTAATTTAATT
29605737 TAATTAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.43, C:0.25, G:0.00, T:0.32
Consensus pattern (22 bp):
AAACCCTAACCTAATTTAATTA
Found at i:29606176 original size:23 final size:23
Alignment explanation
Indices: 29606096--29606153 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
29606086 TTAAAACCCT
*
29606096 AAACCCTAACCTAATTTAATTAA
1 AAACCCTAACCCAATTTAATTAA
*
29606119 AAACCCTAACCCATTTTAATTAA
1 AAACCCTAACCCAATTTAATTAA
29606142 AAACCCTAACCC
1 AAACCCTAACCC
29606154 TAAACTAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.26
Consensus pattern (23 bp):
AAACCCTAACCCAATTTAATTAA
Found at i:29609687 original size:125 final size:125
Alignment explanation
Indices: 29609463--29609737 Score: 414
Period size: 125 Copynumber: 2.2 Consensus size: 125
29609453 CCATGAGGGC
* * *
29609463 GCGATTTGACACTATTTGCTCAG-AAACGTCAAAAAATAATTATTTCTTACATGACCAACTGTAG
1 GCGATTTTATACTATTTGCTCAGAAAACGTCAAAAAATAATTATTTCTTACATGACCAACTGTAC
* **
29609527 CGAAATCGCGTCCACGAAGGCGCGATTTCACAATTTCTTCTCAT-ATAGCATCTTGGTATCA
66 CGAAATCGCGTCCACGAAGGCACGATTTCACAATTTCTTCTC-TGATAGCATC-TGGTAGAA
29609588 GCGATTTTATACTATTTGCTCAGAAAACGTCAAAAAA-AATTATTTCTTACATGACCAACTGTAC
1 GCGATTTTATACTATTTGCTCAGAAAACGTCAAAAAATAATTATTTCTTACATGACCAACTGTAC
* * *
29609652 CGAAATCGCGTCCACGAGGGCATGATTTCATAATTTCTTCTCTGATAGCATCTGGTAGAA
66 CGAAATCGCGTCCACGAAGGCACGATTTCACAATTTCTTCTCTGATAGCATCTGGTAGAA
29609712 GCGATTTTATACTATTTGAC-CAGAAA
1 GCGATTTTATACTATTTG-CTCAGAAA
29609738 TGTCAACTCG
Statistics
Matches: 138, Mismatches: 9, Indels: 7
0.90 0.06 0.05
Matches are distributed among these distances:
124 31 0.22
125 94 0.68
126 13 0.09
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (125 bp):
GCGATTTTATACTATTTGCTCAGAAAACGTCAAAAAATAATTATTTCTTACATGACCAACTGTAC
CGAAATCGCGTCCACGAAGGCACGATTTCACAATTTCTTCTCTGATAGCATCTGGTAGAA
Found at i:29610841 original size:30 final size:31
Alignment explanation
Indices: 29610781--29610841 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
29610771 GGGAGTGGGA
* *
29610781 GGGAAGGGAGTAAAAATTTTGGGGGGAAAGT
1 GGGAAGGGAGTAAAAATTTTGAGGGAAAAGT
* *
29610812 GGGAA-GGAGTAAAATTTTTTAGGGAAAAGT
1 GGGAAGGGAGTAAAAATTTTGAGGGAAAAGT
29610842 AAAAAGTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.38, C:0.00, G:0.39, T:0.23
Consensus pattern (31 bp):
GGGAAGGGAGTAAAAATTTTGAGGGAAAAGT
Found at i:29610904 original size:9 final size:9
Alignment explanation
Indices: 29610890--29610926 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
29610880 TATAGTTTAA
29610890 TATTCGAAT
1 TATTCGAAT
29610899 TATTCGAAT
1 TATTCGAAT
*
29610908 TATTCGAGT
1 TATTCGAAT
29610917 TATTCGAAT
1 TATTCGAAT
29610926 T
1 T
29610927 CAAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:29621734 original size:37 final size:37
Alignment explanation
Indices: 29621648--29621735 Score: 104
Period size: 37 Copynumber: 2.4 Consensus size: 37
29621638 ATTTGTAGAT
* * *
29621648 TTTACTCGTTTGAGCTCCATTCAGCATAACAGTAGAA
1 TTTACTCGTTTGAGCTCCACTCAGCATAACAATAAAA
* * * *
29621685 TTTTCTCATTTGAGCTTCACTCAGTATAACAATAAAA
1 TTTACTCGTTTGAGCTCCACTCAGCATAACAATAAAA
*
29621722 TTTAGTCGTTTGAG
1 TTTACTCGTTTGAG
29621736 TTACTTTCAG
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.38
Consensus pattern (37 bp):
TTTACTCGTTTGAGCTCCACTCAGCATAACAATAAAA
Found at i:29622601 original size:22 final size:23
Alignment explanation
Indices: 29622561--29622613 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
29622551 TTCAACTTTC
* *
29622561 TTAATTAAGCTTTAATAAATC-A
1 TTAATTAAGCTCTAATAAACCAA
29622583 TTAATTAAGC-CTAATTAAACCAA
1 TTAATTAAGCTCTAA-TAAACCAA
29622606 TTAATTAA
1 TTAATTAA
29622614 TCATAACCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 3 0.11
22 15 0.56
23 9 0.33
ACGTcount: A:0.47, C:0.11, G:0.04, T:0.38
Consensus pattern (23 bp):
TTAATTAAGCTCTAATAAACCAA
Found at i:29625210 original size:40 final size:41
Alignment explanation
Indices: 29625073--29625219 Score: 165
Period size: 41 Copynumber: 3.6 Consensus size: 41
29625063 TCGTTTTCAA
* * * **
29625073 GGCGTTTTTCAAAAAGCGCCGATAAT-TATGGGGGATTTAGC
1 GGCGTTTTTGAAAAAGCGTCGCTAATGTA-GGGGCCTTTAGC
* *
29625114 GGCGTTTTTGAAAAAGCGCCGCTAATGTTGGGGCCTTTAGC
1 GGCGTTTTTGAAAAAGCGTCGCTAATGTAGGGGCCTTTAGC
*
29625155 GGCGTTTTTCAAAAAGCGTCGCTAATGCTAGGGG-C-TTAGC
1 GGCGTTTTTGAAAAAGCGTCGCTAATG-TAGGGGCCTTTAGC
* *
29625195 GGCGTTTTTGGAAAAGCGTCACTAA
1 GGCGTTTTTGAAAAAGCGTCGCTAA
29625220 AAACATTTTA
Statistics
Matches: 93, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
40 27 0.29
41 60 0.65
42 6 0.06
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.29
Consensus pattern (41 bp):
GGCGTTTTTGAAAAAGCGTCGCTAATGTAGGGGCCTTTAGC
Found at i:29625583 original size:15 final size:15
Alignment explanation
Indices: 29625563--29625593 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
29625553 CATATTTTAA
29625563 GGTTTAGGGAGTATG
1 GGTTTAGGGAGTATG
*
29625578 GGTTTATGGAGTATG
1 GGTTTAGGGAGTATG
29625593 G
1 G
29625594 ATTAAGGATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.45, T:0.35
Consensus pattern (15 bp):
GGTTTAGGGAGTATG
Found at i:29625653 original size:15 final size:14
Alignment explanation
Indices: 29625630--29625688 Score: 55
Period size: 16 Copynumber: 3.9 Consensus size: 14
29625620 GATTTAAGGT
*
29625630 TTAGGGGTTAGAGGG
1 TTAGAGGTTAG-GGG
29625645 TTAGAGGTTTAGGGG
1 TTAGAGG-TTAGGGG
29625660 TTAGACGTGTTAGGGG
1 TTAGA-G-GTTAGGGG
* *
29625676 TTAAAAGTTAGGG
1 TTAGAGGTTAGGG
29625689 ATTCAGGGGT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
14 7 0.18
15 14 0.37
16 16 0.42
17 1 0.03
ACGTcount: A:0.24, C:0.02, G:0.44, T:0.31
Consensus pattern (14 bp):
TTAGAGGTTAGGGG
Found at i:29625656 original size:16 final size:16
Alignment explanation
Indices: 29625636--29625678 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
29625626 AGGTTTAGGG
*
29625636 GTTAGAGGGTTAGAGGT
1 GTTAG-GGGTTAGACGT
29625653 -TTAGGGGTTAGACGT
1 GTTAGGGGTTAGACGT
29625668 GTTAGGGGTTA
1 GTTAGGGGTTA
29625679 AAAGTTAGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.21, C:0.02, G:0.44, T:0.33
Consensus pattern (16 bp):
GTTAGGGGTTAGACGT
Found at i:29625899 original size:14 final size:15
Alignment explanation
Indices: 29625864--29625910 Score: 71
Period size: 14 Copynumber: 3.3 Consensus size: 15
29625854 TATTTTAAGG
*
29625864 TTTAGGGAGTATGGA
1 TTTAGGGATTATGGA
29625879 TTTAGGGATTATGGA
1 TTTAGGGATTATGGA
29625894 -TTAGGGATTATGG-
1 TTTAGGGATTATGGA
29625907 TTTA
1 TTTA
29625911 AGGGTTGGGA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 16 0.53
15 14 0.47
ACGTcount: A:0.26, C:0.00, G:0.34, T:0.40
Consensus pattern (15 bp):
TTTAGGGATTATGGA
Found at i:29625932 original size:21 final size:22
Alignment explanation
Indices: 29625894--29625946 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
29625884 GGATTATGGA
29625894 TTAGGGA-TT-ATGGTTTAAGGG
1 TTAGGGATTTAAT-GTTTAAGGG
29625915 TT-GGGATTTAATGTTTAAGGG
1 TTAGGGATTTAATGTTTAAGGG
*
29625936 TTAGGGGTTTA
1 TTAGGGATTTA
29625947 GGGGTTAGAC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 4 0.14
21 15 0.54
22 9 0.32
ACGTcount: A:0.23, C:0.00, G:0.36, T:0.42
Consensus pattern (22 bp):
TTAGGGATTTAATGTTTAAGGG
Found at i:29626523 original size:71 final size:72
Alignment explanation
Indices: 29626365--29626510 Score: 267
Period size: 72 Copynumber: 2.0 Consensus size: 72
29626355 CGCAAATATA
*
29626365 AATCAATTTATAAAAAACAAAATAAAAAATTTTTAGCATAGTAAAACGGCGTCATTTTGTTCAAA
1 AATCAATTTATAAAAAACAAAATAAAAAATTTTTAGCATAGTAAAACAGCGTCATTTTGTTCAAA
29626430 ATGAAAT
66 ATGAAAT
*
29626437 AATCAATTTATAAAAAACAAAATAAAAAATTTTTAGCATAGTAAAACAGTGTCA-TTTGTTCAAA
1 AATCAATTTATAAAAAACAAAATAAAAAATTTTTAGCATAGTAAAACAGCGTCATTTTGTTCAAA
29626501 ATGAAAT
66 ATGAAAT
29626508 AAT
1 AAT
29626511 TTTTTAATAA
Statistics
Matches: 72, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
71 20 0.28
72 52 0.72
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.31
Consensus pattern (72 bp):
AATCAATTTATAAAAAACAAAATAAAAAATTTTTAGCATAGTAAAACAGCGTCATTTTGTTCAAA
ATGAAAT
Found at i:29628166 original size:6 final size:6
Alignment explanation
Indices: 29628155--29628182 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
29628145 TATAATATCA
29628155 TTTCAT TTTCAT TTTCAT TTTCAT TTTC
1 TTTCAT TTTCAT TTTCAT TTTCAT TTTC
29628183 GATTATCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.18, G:0.00, T:0.68
Consensus pattern (6 bp):
TTTCAT
Found at i:29629808 original size:86 final size:85
Alignment explanation
Indices: 29629658--29629994 Score: 363
Period size: 86 Copynumber: 3.9 Consensus size: 85
29629648 TCTACTTTAT
* * * * * ** *
29629658 TAAAGTTGAAAATTTGGTCTGGTTGTTGATGAATGCATGAACTTGAACTGTTGATTTTTTCTAAT
1 TAAAATTGAAAATTTAGTCTGGTTGTTGGTAAATACATGAACTTGAACCATTGATTTTTGCTAAT
29629723 TTGTTGCACATAAGTTGTTA
66 TTGTTGCACATAAGTTGTTA
* *
29629743 TAAAAGTTGAAAATTTAGTCTGGTTGTTGGTAAATGCATGAACTTGAACCATTTATTTTTGCTAA
1 TAAAA-TTGAAAATTTAGTCTGGTTGTTGGTAAATACATGAACTTGAACCATTGATTTTTGCTAA
*
29629808 TTTGTTGCATATAAGTTGTTA
65 TTTGTTGCACATAAGTTGTTA
* * * *
29629829 TAAATATTGAAAAATTAGTCTGATTTTTGGTAAATACATGAACTTGAACCACTGATTTTTGCTAA
1 TAAA-ATTGAAAATTTAGTCTGGTTGTTGGTAAATACATGAACTTGAACCATTGATTTTTGCTAA
* * * *
29629894 TTTTTTGCATATAAATCGTTA
65 TTTGTTGCACATAAGTTGTTA
* * ** * * *
29629915 TAGAAATTGAAGATTTAGCCCT-GTTGCCGGTAAATATATGAACTATGAA-TAGTTTATTTTTGC
1 TA-AAATTGAAAATTTAG-TCTGGTTGTTGGTAAATACATGAACT-TGAACCA-TTGATTTTTGC
*
29629978 TAATTTGTTTCACATAA
62 TAATTTGTTGCACATAA
29629995 ACTGTTGTAA
Statistics
Matches: 214, Mismatches: 32, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
85 4 0.02
86 178 0.83
87 32 0.15
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.42
Consensus pattern (85 bp):
TAAAATTGAAAATTTAGTCTGGTTGTTGGTAAATACATGAACTTGAACCATTGATTTTTGCTAAT
TTGTTGCACATAAGTTGTTA
Found at i:29630035 original size:40 final size:40
Alignment explanation
Indices: 29629970--29630091 Score: 113
Period size: 40 Copynumber: 3.0 Consensus size: 40
29629960 TGAATAGTTT
* * * * * *
29629970 ATTTTTGCTAATTTGTTTCACATAAACTGTTGTAA-GATTG
1 ATTTTTGATAATTTCTTACATATAAACTATTGAAATG-TTG
* * *
29630010 ATTTTTGTTAATTTCTTGCATATAAATTATTGAAATGTTG
1 ATTTTTGATAATTTCTTACATATAAACTATTGAAATGTTG
* *
29630050 ATTTTTGATAATTCCTTACATATTAAA-TATTGAAGTGTTG
1 ATTTTTGATAATTTCTTACATA-TAAACTATTGAAATGTTG
29630090 AT
1 AT
29630092 ATTCAAGCTA
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
40 64 0.93
41 5 0.07
ACGTcount: A:0.30, C:0.07, G:0.13, T:0.49
Consensus pattern (40 bp):
ATTTTTGATAATTTCTTACATATAAACTATTGAAATGTTG
Found at i:29630419 original size:14 final size:14
Alignment explanation
Indices: 29630400--29630428 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
29630390 TCAGTTTGAT
29630400 TATTTTTAGTTTTA
1 TATTTTTAGTTTTA
29630414 TATTTTTAGTTTTA
1 TATTTTTAGTTTTA
29630428 T
1 T
29630429 TTTAGTTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.72
Consensus pattern (14 bp):
TATTTTTAGTTTTA
Found at i:29632132 original size:43 final size:42
Alignment explanation
Indices: 29632085--29632354 Score: 317
Period size: 43 Copynumber: 6.3 Consensus size: 42
29632075 GAATCGTACT
* * * * *
29632085 TTTAGTGGCGTTTGTGATAAAAGTGTCGATAAAGATCATGTTC
1 TTTAGCGGCGTTTGTGGT-AAAGCGCCGCTAAAGATCATGTTC
* * *
29632128 TTTAGTGGCGTTTGTGGGAGAACCGCCGCTAAAGATCATGTTC
1 TTTAGCGGCGTTTGTGGTA-AAGCGCCGCTAAAGATCATGTTC
* * * *
29632171 TTTTGCGGTGTTCGTGGGTAAAGCGCCGTTAAAGATCATGTTC
1 TTTAGCGGCGTTTGT-GGTAAAGCGCCGCTAAAGATCATGTTC
*
29632214 TTTAGCGGCGTTTGTTGGT-AAGCGCCGCTAAAGGTCATGTTC
1 TTTAGCGGCGTTTG-TGGTAAAGCGCCGCTAAAGATCATGTTC
* **
29632256 TTTAGCGGCGTTTGTTGGTAAAGCGTCGCTAAAGGCCATGTTC
1 TTTAGCGGCGTTTG-TGGTAAAGCGCCGCTAAAGATCATGTTC
* *
29632299 TTTAGCGGCGTTTGTGGGTAAAGTGCCGCTAAAGCTCATGTTC
1 TTTAGCGGCGTTTGT-GGTAAAGCGCCGCTAAAGATCATGTTC
29632342 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
29632355 TTTCACAGAA
Statistics
Matches: 198, Mismatches: 24, Indels: 10
0.85 0.10 0.04
Matches are distributed among these distances:
42 42 0.21
43 152 0.77
44 4 0.02
ACGTcount: A:0.20, C:0.17, G:0.30, T:0.34
Consensus pattern (42 bp):
TTTAGCGGCGTTTGTGGTAAAGCGCCGCTAAAGATCATGTTC
Found at i:29632277 original size:85 final size:85
Alignment explanation
Indices: 29632114--29632354 Score: 329
Period size: 85 Copynumber: 2.8 Consensus size: 85
29632104 AAAGTGTCGA
* * * *
29632114 TAAAGATCATGTTCTTTAGTGGCGTTTGTGGGAGAACCGCCGCTAAAGATCATGTTCTTTTGCGG
1 TAAAGATCATGTTCTTTAGCGGCGTTTGTGGG-TAAGCGCCGCTAAAGATCATGTTCTTTAGCGG
* * *
29632179 TGTTCGTGGGTAAAGCGCCGT
65 CGTTTGTGGGTAAAGCGCCGC
* *
29632200 TAAAGATCATGTTCTTTAGCGGCGTTTGTTGGTAAGCGCCGCTAAAGGTCATGTTCTTTAGCGGC
1 TAAAGATCATGTTCTTTAGCGGCGTTTGTGGGTAAGCGCCGCTAAAGATCATGTTCTTTAGCGGC
* *
29632265 GTTTGTTGGTAAAGCGTCGC
66 GTTTGTGGGTAAAGCGCCGC
** * *
29632285 TAAAGGCCATGTTCTTTAGCGGCGTTTGTGGGTAAAGTGCCGCTAAAGCTCATGTTCTTTAGCGG
1 TAAAGATCATGTTCTTTAGCGGCGTTTGTGGGT-AAGCGCCGCTAAAGATCATGTTCTTTAGCGG
29632350 CGTTT
65 CGTTT
29632355 TTTCACAGAA
Statistics
Matches: 138, Mismatches: 16, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
85 74 0.54
86 64 0.46
ACGTcount: A:0.19, C:0.18, G:0.29, T:0.34
Consensus pattern (85 bp):
TAAAGATCATGTTCTTTAGCGGCGTTTGTGGGTAAGCGCCGCTAAAGATCATGTTCTTTAGCGGC
GTTTGTGGGTAAAGCGCCGC
Found at i:29632300 original size:128 final size:128
Alignment explanation
Indices: 29632114--29632354 Score: 349
Period size: 128 Copynumber: 1.9 Consensus size: 128
29632104 AAAGTGTCGA
* * *
29632114 TAAAGATCATGTTCTTTAGTGGCGTTTGTGGGAGAACCGCCGCTAAAGATCATGTTCTTTTGCGG
1 TAAAGATCATGTTCTTTAGCGGCGTTTGTGGGAGAACCGCCGCTAAAGACCATGTTCTTTAGCGG
* *
29632179 TGTTCGTGGGTAAAGCGCCGTTAAAGATCATGTTCTTTAGCGGCGTTTGTTGGTAAGCGCCGC
66 CGTTCGTGGGTAAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTTGGTAAGCGCCGC
* * * * *
29632242 TAAAGGTCATGTTCTTTAGCGGCGTTTGTTGGTA-AAGCGTCGCTAAAGGCCATGTTCTTTAGCG
1 TAAAGATCATGTTCTTTAGCGGCGTTTG-TGGGAGAACCGCCGCTAAAGACCATGTTCTTTAGCG
* * *
29632306 GCGTTTGTGGGTAAAGTGCCGCTAAAGCTCATGTTCTTTAGCGGCGTTT
65 GCGTTCGTGGGTAAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTT
29632355 TTTCACAGAA
Statistics
Matches: 99, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
128 95 0.96
129 4 0.04
ACGTcount: A:0.19, C:0.18, G:0.29, T:0.34
Consensus pattern (128 bp):
TAAAGATCATGTTCTTTAGCGGCGTTTGTGGGAGAACCGCCGCTAAAGACCATGTTCTTTAGCGG
CGTTCGTGGGTAAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTTGGTAAGCGCCGC
Found at i:29633302 original size:2 final size:2
Alignment explanation
Indices: 29633295--29633319 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
29633285 GTATTTGAAT
29633295 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
29633320 GTCTTTGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:29633808 original size:15 final size:18
Alignment explanation
Indices: 29633774--29633810 Score: 53
Period size: 15 Copynumber: 2.2 Consensus size: 18
29633764 AACGGTTTAT
29633774 ATGAGATGAGAAATTGAA
1 ATGAGATGAGAAATTGAA
29633792 ATGAGAT-A-AAA-TGAA
1 ATGAGATGAGAAATTGAA
29633807 ATGA
1 ATGA
29633811 ACTCGATGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 8 0.42
16 3 0.16
17 1 0.05
18 7 0.37
ACGTcount: A:0.54, C:0.00, G:0.24, T:0.22
Consensus pattern (18 bp):
ATGAGATGAGAAATTGAA
Found at i:29635504 original size:17 final size:17
Alignment explanation
Indices: 29635476--29635523 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
29635466 CACTTTGTTC
* *
29635476 TTTTTTTTTATTTCT-A
1 TTTTTATTTATTTATGA
29635492 TTTCTTATTTATTTATGA
1 TTT-TTATTTATTTATGA
29635510 TTTTTATTT-TTTAT
1 TTTTTATTTATTTAT
29635524 TCTCAAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 8 0.29
17 16 0.57
18 4 0.14
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.77
Consensus pattern (17 bp):
TTTTTATTTATTTATGA
Found at i:29635587 original size:37 final size:37
Alignment explanation
Indices: 29635496--29635587 Score: 102
Period size: 37 Copynumber: 2.5 Consensus size: 37
29635486 TTTCTATTTC
* *
29635496 TTATTTATTTATGATTTT-TATTTTTTATTCTCAAAT
1 TTATTTATTTCTTATTTTCTATTTTTTATTCTCAAAT
29635532 TTATTCT-TTTAC-TATTTTCTATTTTTTATTACT-AAAT
1 TTATT-TATTT-CTTATTTTCTATTTTTTATT-CTCAAAT
*
29635569 TTATTTATTTCTTCTTTTC
1 TTATTTATTTCTTATTTTC
29635588 AGATCATATC
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
36 15 0.32
37 30 0.64
38 2 0.04
ACGTcount: A:0.22, C:0.10, G:0.01, T:0.67
Consensus pattern (37 bp):
TTATTTATTTCTTATTTTCTATTTTTTATTCTCAAAT
Found at i:29645755 original size:22 final size:22
Alignment explanation
Indices: 29645700--29645755 Score: 80
Period size: 20 Copynumber: 2.6 Consensus size: 22
29645690 ATACAACTAT
29645700 TAGTACAATTGAAACACATGTTA
1 TAGTA-AATTGAAACACATGTTA
*
29645723 TAGT--ATTGAAACACATGTTG
1 TAGTAAATTGAAACACATGTTA
29645743 TAGTAAATTGAAA
1 TAGTAAATTGAAA
29645756 GTTTGCAGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 19 0.63
22 7 0.23
23 4 0.13
ACGTcount: A:0.43, C:0.09, G:0.16, T:0.32
Consensus pattern (22 bp):
TAGTAAATTGAAACACATGTTA
Found at i:29646648 original size:62 final size:59
Alignment explanation
Indices: 29646536--29646649 Score: 165
Period size: 62 Copynumber: 1.9 Consensus size: 59
29646526 CACTTTAAAA
* * * *
29646536 TAAATTAATATAATATTTATCAAGATAAATATTAGATTAGATTTAATATTAAATTTTAT
1 TAAATTAATAAAATATTTATCAAGATAAACATTAAATTAAATTTAATATTAAATTTTAT
29646595 TAAATTAATAAAATATTTATCTACAAGATAAACATTAAATTAAATTTAATATTAA
1 TAAATTAATAAAATATTTA--T-CAAGATAAACATTAAATTAAATTTAATATTAA
29646650 GATAATCACT
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
59 18 0.38
61 1 0.02
62 29 0.60
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.42
Consensus pattern (59 bp):
TAAATTAATAAAATATTTATCAAGATAAACATTAAATTAAATTTAATATTAAATTTTAT
Found at i:29646675 original size:20 final size:18
Alignment explanation
Indices: 29646628--29646676 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
29646618 CAAGATAAAC
29646628 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
29646645 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
29646665 ATTAAATTAATA
1 ATTAAATTAATA
29646677 AAATATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:29655801 original size:24 final size:23
Alignment explanation
Indices: 29655765--29655811 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 23
29655755 GTAAATAAGA
29655765 AAAATATCTTTAG-AAATTTTCT
1 AAAATATCTTTAGAAAATTTTCT
29655787 AAAATAATGCTTTAGAAAATTTTCT
1 AAAAT-AT-CTTTAGAAAATTTTCT
29655812 CTGTACAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 5 0.23
23 2 0.09
24 6 0.27
25 9 0.41
ACGTcount: A:0.43, C:0.09, G:0.06, T:0.43
Consensus pattern (23 bp):
AAAATATCTTTAGAAAATTTTCT
Found at i:29658122 original size:14 final size:14
Alignment explanation
Indices: 29658103--29658129 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
29658093 GTGCTTCCTT
29658103 TGTAACAACCCATA
1 TGTAACAACCCATA
29658117 TGTAACAACCCAT
1 TGTAACAACCCAT
29658130 TTTTCAATGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.30, G:0.07, T:0.22
Consensus pattern (14 bp):
TGTAACAACCCATA
Found at i:29660978 original size:42 final size:42
Alignment explanation
Indices: 29660914--29661022 Score: 182
Period size: 42 Copynumber: 2.6 Consensus size: 42
29660904 ACGGCCAAGC
* *
29660914 CACACGCCTGTGTGCTAGGCCGTGTAACTTTCGAAATGGCCT
1 CACACGCCTGTGTGCCAAGCCGTGTAACTTTCGAAATGGCCT
*
29660956 CACACGCCTATGTGCCAAGCCGTGTAACTTTCGAAATGGCCT
1 CACACGCCTGTGTGCCAAGCCGTGTAACTTTCGAAATGGCCT
*
29660998 CACATGCCTGTGTGCCAAGCCGTGT
1 CACACGCCTGTGTGCCAAGCCGTGT
29661023 GCTAGGCTGT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.20, C:0.30, G:0.25, T:0.25
Consensus pattern (42 bp):
CACACGCCTGTGTGCCAAGCCGTGTAACTTTCGAAATGGCCT
Found at i:29678245 original size:117 final size:118
Alignment explanation
Indices: 29678099--29678333 Score: 348
Period size: 117 Copynumber: 2.0 Consensus size: 118
29678089 CAACCACTAA
*
29678099 AAAGAATACAGAGATAATAAAGAGGCATATAAAAATTCAATACCATACACAA-ATCATGGCCAGA
1 AAAGAATACAGAGATAATAAAGAGGCATATAAAAATTCAATACCATACACAAGA-CATGACCAGA
* * * * *
29678163 TTTGAATCTTGAAATTTCTTTTTACAACCTATCTAG-CCAAGAATAATTAGCAG
65 TTTGAACCTAGAAATTTCTGTTTACAACCCATCTAGTCCAAGAATAACTAGCAG
* * *
29678216 AAAGAATACAGAGATAATAATGATGCATATAAAAATTCAATACCATACACAAGACATGACTAGAT
1 AAAGAATACAGAGATAATAAAGAGGCATATAAAAATTCAATACCATACACAAGACATGACCAGAT
* *
29678281 TTGAACCTAGAAATTTCTGTTTACAGCCCATGTAGTCCAAGAATAACTAGCAG
66 TTGAACCTAGAAATTTCTGTTTACAACCCATCTAGTCCAAGAATAACTAGCAG
29678334 TGCACAGTGA
Statistics
Matches: 105, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
117 88 0.84
118 17 0.16
ACGTcount: A:0.44, C:0.17, G:0.14, T:0.26
Consensus pattern (118 bp):
AAAGAATACAGAGATAATAAAGAGGCATATAAAAATTCAATACCATACACAAGACATGACCAGAT
TTGAACCTAGAAATTTCTGTTTACAACCCATCTAGTCCAAGAATAACTAGCAG
Found at i:29678417 original size:27 final size:27
Alignment explanation
Indices: 29678387--29678440 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
29678377 TTCTTAAAGA
*
29678387 AAATTTATTTTTGACATGAAATGAGTT
1 AAATTTATTTTTAACATGAAATGAGTT
*
29678414 AAATTTATTTTTAACATGAATTGAGTT
1 AAATTTATTTTTAACATGAAATGAGTT
29678441 CTGTTCTGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.13, T:0.46
Consensus pattern (27 bp):
AAATTTATTTTTAACATGAAATGAGTT
Found at i:29684583 original size:53 final size:53
Alignment explanation
Indices: 29684525--29684632 Score: 189
Period size: 53 Copynumber: 2.0 Consensus size: 53
29684515 GTTAACATGT
*
29684525 TAAGCTTCCTCAATTTTGAAGATGCAAATGTAGTAACATAGGTTTATATTTAA
1 TAAGCTTCCTCAATTTTGAAGATGCAAATATAGTAACATAGGTTTATATTTAA
* *
29684578 TAAGCTTCCTCAATTTTGAAGATGCAAATATATTAAGATAGGTTTATATTTAA
1 TAAGCTTCCTCAATTTTGAAGATGCAAATATAGTAACATAGGTTTATATTTAA
29684631 TA
1 TA
29684633 CTACCAGTAT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.37, C:0.10, G:0.14, T:0.39
Consensus pattern (53 bp):
TAAGCTTCCTCAATTTTGAAGATGCAAATATAGTAACATAGGTTTATATTTAA
Found at i:29698644 original size:16 final size:16
Alignment explanation
Indices: 29698615--29698676 Score: 70
Period size: 16 Copynumber: 3.9 Consensus size: 16
29698605 TTCGGTTCGC
*
29698615 TGTATTGGAATAGAGG
1 TGTAATGGAATAGAGG
* *
29698631 CGTAATGGATTAGAGG
1 TGTAATGGAATAGAGG
* * *
29698647 TGTAATAGATTAGAAG
1 TGTAATGGAATAGAGG
29698663 TGTAATGGAATAGA
1 TGTAATGGAATAGA
29698677 ATTGTAATAG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.37, C:0.02, G:0.32, T:0.29
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Done.