Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_136 ID=scaffold_136-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47408
ACGTcount: A:0.08, C:0.06, G:0.05, T:0.06
Warning! 36123 characters in sequence are not A, C, G, or T
Found at i:169 original size:16 final size:16
Alignment explanation
Indices: 148--182 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
138 GAAATAAAAT
148 GAGAGGGATGCAACAC
1 GAGAGGGATGCAACAC
164 GAGAGGGATGCAACAC
1 GAGAGGGATGCAACAC
180 GAG
1 GAG
183 GACTTCCCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.37, C:0.17, G:0.40, T:0.06
Consensus pattern (16 bp):
GAGAGGGATGCAACAC
Found at i:3545 original size:302 final size:303
Alignment explanation
Indices: 2998--4223 Score: 2023
Period size: 302 Copynumber: 4.0 Consensus size: 303
2988 NNNNNNNNNN
* *
2998 GTATGATCGCACCCGCCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCCTTATCGCAGTT
1 GTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG-CCCCTTATCGCACTT
* *
3063 GCGCCTCAAATTTAAATGCAAATTCGACCGAATATCGTTCCAAATTGTCTATTTCACAAAACGCA
65 GCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTCCAAATTGTCTATTTCACAAAACGCA
*
3128 AATAACGAATGATTTACACCACGTCGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAA-
130 AATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAAT
3192 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
195 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
3257 AGCTGAACTGCGGAATTCTGATGGGATCCGGTGCATTAGTGCTG
260 AGCTGAACTGCGGAATTCTGATGGGATCCGGTGCATTAGTGCTG
*
3301 GTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAGTTG
1 GTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTG
* *
3366 CGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAATTGTTTATTTCACAAAACGCAA
66 CGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTCCAAATTGTCTATTTCACAAAACGCAA
* * *
3431 ATAACGACTGAGCTACACCACGTCGAGAAAATGCAACT-AAAAAAACATTATATGAAATAAAATT
131 ATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAATG
* *
3495 GGAGGGGTGCAACACGAGGACTTCCCATGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
196 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAA
* * * *
3560 GCTGACCTACGGAGTTCTGATGGGATCTGGTGCATTAGTGCTG
261 GCTGAACTGCGGAATTCTGATGGGATCCGGTGCATTAGTGCTG
3603 GTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTG
1 GTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTG
* *
3668 CGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAATCT-TCTATTTCACGAAACGCA
66 CGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTCCAAAT-TGTCTATTTCACAAAACGCA
3732 AATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT-AAAAAAA-ATTATATGAAATAAAAT
130 AATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAAT
3795 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
195 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
* * * * *
3860 CAGGTTAACTGCGGAGTTCTGAAGGGATCCGGTGCATTACTGCTG
260 -AGCTGAACTGCGGAATTCTGATGGGATCCGGTGCATTAGTGCTG
*
3905 GTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTGATCGCACTTG
1 GTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTG
* * * * * *
3970 CGCCTCGAATTTAAATGCAAAATCGACCCCGAATATCGTTCCAAATTATTTATTTCACAAAATGA
66 CGCCTCGAATTTAAATGCAAATTCGA--CCAAATATCGTTCCAAATTGTCTATTTCACAAAACGC
* *
4035 AAATAACGAATGAGTTACACCGCGTCGAGAAAATGCAACTAAAAAAAATATTATATGAAATAAAA
129 AAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAA
* *
4100 TGGGAGGGGTGCAACACCAGGACATCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
194 TGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* *
4165 ACGCTTAACTGCGG-ATTCTGATGGGATCCGGGTGCATTAGTGCTG
259 AAGCTGAACTGCGGAATTCTGATGGGATCC-GGTGCATTAGTGCTG
4210 GTATGATCGCACCC
1 GTATGATCGCACCC
4224 NNNNNNNNNN
Statistics
Matches: 868, Mismatches: 46, Indels: 16
0.93 0.05 0.02
Matches are distributed among these distances:
301 104 0.12
302 507 0.58
303 50 0.06
304 81 0.09
305 46 0.05
306 80 0.09
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (303 bp):
GTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTG
CGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTCCAAATTGTCTATTTCACAAAACGCAA
ATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAAAAAACATTATATGAAATAAAATG
GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAA
GCTGAACTGCGGAATTCTGATGGGATCCGGTGCATTAGTGCTG
Found at i:5714 original size:301 final size:302
Alignment explanation
Indices: 5162--5936 Score: 1356
Period size: 301 Copynumber: 2.6 Consensus size: 302
5152 NNNNNNNNNN
* *
5162 AAGGCTGCCCCCTTATCGCAGTTGCGCCTCAAATTTAAATGCAAATTCGACCGAATATCGTTCCA
1 AAGGCTG-CCCCTTATCGCAGTTGCGCCTCAAATTTAAATGCAAATTCGACCAAATATCGTTTCA
* * *
5227 AATTGTCTATTTCACAAAACGCAAATAACGAATGATTTACACCACGTCGAGAAAATGCAAATAAA
65 AATTGTTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT-AA
* *
5292 AAAAACATTATATGAAATAAAATGAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATC
129 AAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGACACCCATC
5357 CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGC
194 CTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGC
5422 TGGTATGATCGCACCC-CTCAACTCTTGCGCAATCTAATCATATA
259 TGGTATGATCGCACCCGC-CAACTCTTGCGCAATCTAATCATATA
* *
5466 AAGGCTGCCCCTTATCGCAGTTGCGCCTCGAATTTAAATGCAAATTCGACAAAATATCGTTTCAA
1 AAGGCTGCCCCTTATCGCAGTTGCGCCTCAAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
* *
5531 ATTGTTTATTTCACAAAACGCAAATAACGATTGAGTTACACCACGTCGAGAAAATGCAACTAGAA
66 ATTGTTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAA
5596 AAA-ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGACACCCATCCT
131 AAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGACACCCATCCT
* *
5660 AGTACTACTCTCGCCCAAGCACGGTTCACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTG
196 AGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTG
*
5725 GTATGATCGCACCCGCCAACTCTTGCGCAATCTATTCATATA
261 GTATGATCGCACCCGCCAACTCTTGCGCAATCTAATCATATA
5767 AAGGCTGCCCCTTATCGCAGTTGCGCCTCAAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
1 AAGGCTGCCCCTTATCGCAGTTGCGCCTCAAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
* *
5832 ATTGTTTATTTCACAAAACGCAAATAACGACTGAGCTACACCACGTCGAGAAAATGCAACTAAAA
66 ATTGTTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAA
*
5897 AAACATTATATGAAATAAAATTGGAGGGGTGCAACACGAG
131 AAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAG
5937 NNNNNNNNNN
Statistics
Matches: 449, Mismatches: 20, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
301 289 0.64
302 42 0.09
303 111 0.25
304 7 0.02
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.24
Consensus pattern (302 bp):
AAGGCTGCCCCTTATCGCAGTTGCGCCTCAAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
ATTGTTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAA
AAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGACACCCATCCT
AGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTG
GTATGATCGCACCCGCCAACTCTTGCGCAATCTAATCATATA
Found at i:6275 original size:14 final size:14
Alignment explanation
Indices: 6256--6283 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6246 ACAAAATGAA
6256 AATAACGAATGAGT
1 AATAACGAATGAGT
6270 AATAACGAATGAGT
1 AATAACGAATGAGT
6284 TACACCGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.21, T:0.21
Consensus pattern (14 bp):
AATAACGAATGAGT
Found at i:6817 original size:303 final size:303
Alignment explanation
Indices: 6037--8917 Score: 4556
Period size: 303 Copynumber: 9.4 Consensus size: 303
6027 NNNNNNNNNN
* * *
6037 CTTCCCATGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTGAACTACGGAGTTCTGA
1 CTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGA
* *
6102 AGGGATCCGGTGCATTATTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATA
66 TGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATA
* * * *
6167 AAGGCTGCCCCTGATCGCACTTGCGCCTCGAATTTAAATGCAAAATCGACCCCGAATATCGTTCC
131 AAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGA--CCAAATATCGTTTC
* * *
6232 AAATTATTTATTTCACAAAATGAAAATAACGAATGAGTAATAACGAATGAGTTACACCGCATCGA
194 AAATTATTCATTTCAC--------AA-AACG-A--A--AATAACGAATGAGTTACACCACGTCGA
*
6297 GAAAATGCAACTAAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACCCGAGGA
245 GAAAATGCAACTAAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGA
*
6356 CTTCCCAGGAGGACACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGA
1 CTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGA
*
6421 TGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCACAATCTATTCATATA
66 TGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATA
* *
6486 AAGGCTGCCCCTTATCGTACTTGCGCCTCGAATTTAAATGCAAATTCGAGCAAATATCGTTTCAA
131 AAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
* * *
6551 TTTATTCATTTCACACAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAAATAAAA
196 ATTATTCATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAA
*
6616 AAAACATTATATGAAATAAAATGAGAGGGGTGCAACACGAGGA
261 AAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGA
6659 CTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGA
1 CTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGA
* *
6724 TGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCCTCAACTCTTGCGCAATCTAATCATATA
66 TGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATA
* *
6789 AAGGCTGCCCCTTATCGCAGTTGCGCCTCGAATTTAAATGCAAATTCGACAAAATATCGTTTC-A
131 AAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
* * * * *
6853 ATTGTTTATTTCACAAAACGCAAATAACGATTGAGTTACACCACGTCGAGAAAATGCAACT-AGA
196 ATTATTCATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAA
6917 AAAA-ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGA
261 AAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGA
* * *
6959 CTTCCCAGGAGGACACCCATCCTAGTACTACTCTCGCCCAAGCACGGTTCACTGCGGAGTTCTGA
1 CTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGA
*
7024 TGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGCCAACTCTTGCGCAATCTATTCATATA
66 TGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATA
* *
7089 AAGGCTGCCCCCTTGGATCGCAGTTGGCGCCTCAAATTTAAATGCAAAATTCGACCCCAAATATC
131 AAGGCTG-CCCCTT--ATCGCACTT-GCGCCTCGAATTTAAATGC-AAATTCGA--CCAAATATC
* * * * *
7154 GTTTCCAAATTGTTCTATTTCACAAAACAGCAAATAACGAATGATTTACTCCTCGTACGAGAAAA
189 GTTT-CAAATTATTC-ATTTCACAAAAC-GAAAATAACGAATGAGTTACACCACGT-CGAGAAAA
*
7219 TGCAACTAAAAAAAACATTATATGAAATAAAAGGGGAGGGGTGCAACACGAGGA
250 TGCAACTAAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGA
*
7273 CTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAAGCTTAACTGCGGAGTTCTGA
1 CTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGA
*
7338 TGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGCCAACTCTTGCGCAATCTATTCATATA
66 TGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATA
* * * *
7403 AAGGCTGCCCCCTTATCGCAGTTGCGCCTCAAATTTAAATGCAAATTCGACCGAATATCGTTCCA
131 AAGGCTG-CCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCA
* * *
7468 AATT-GTCTATTTCACAAAACGCAAATAACGAATGATTTACACCACGTCGAGAAAATGCAACTAA
195 AATTATTC-ATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAA
7532 AAAAAACATTATATGAAATAAAA-GGGAGGGGTGCAACACGAGGA
259 AAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGA
* * *
7576 CTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAAGCTGAACTGCGGAATTCTGA
1 CTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGA
7641 TGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATA
66 TGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATA
*
7706 AAGGCTGCCCCTTATCGCAGTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
131 AAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
* * * *
7771 ATTGATT-ATTTCACAAAACGCAAATAACGACTGAGCTACACTACGTCGAGAAAATGCAACT-AA
196 ATT-ATTCATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAA
*
7834 AAAAACATTATATGAAATAAAATTGGAGGGGTGCAACACGAGGA
260 AAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGA
* * * *
7878 CTTCCCATGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTGACCTACGGAGTTCTGA
1 CTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGA
*
7943 TGGGATCTGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATA
66 TGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATA
*
8008 AGGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
131 AAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
* *
8073 ATT-TTCTATTTCACGAAACGGAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAA
196 ATTATTC-ATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAA
*
8137 AAATA-ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGA
260 AAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGA
* * *
8180 CTTCCCAGGGAGATCACCCATCCTAGTACTACTCTCGCCCAGGCACGGTTAACTGCGGAGTTCTG
1 CTTCCCA-GGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTG
* * *
8245 AAGGGATCCGGTGCATTACTGCTGGTATGATCGAACCCGTCAACTCTTGCGCAATCTATTCATAT
65 ATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATAT
* * *
8310 AAAGGCTGCCCCCTGATCGCACTTGCGCCTCGAATTTAAATGCAAAATCGACCCCGAATATCGTT
130 AAAGGCTG-CCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGA--CCAAATATCGTT
* * * *
8375 CCAAATTATTTATTTCACAAAATGAAAATAACGAATGAGTTACACCGCGTCGAGAAAATGCAACT
192 TCAAATTATTCATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
*
8440 AAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACCAGGA
257 AAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGA
*
8487 CATCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGA
1 CTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGA
*
8552 TGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCACAATCTATTCATATA
66 TGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATA
* *
8617 AAGGCTGCCCCTTATCGTACTTGCGCCTCGAATTTAAATGCAAATTCGAGCAAATATCGTTTCAA
131 AAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
* * *
8682 TTTATTCATTTCACACAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAAATAAAA
196 ATTATTCATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAA
*
8747 AAAACATTATATGAAATAAAATGAGAGGGGTGCAACACGAGGA
261 AAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGA
8790 CTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGA
1 CTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGA
*
8855 TGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCCTCAACTCTTGCGCAATCTATTCATA
66 TGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATA
8918 NNNNNNNNNN
Statistics
Matches: 2399, Mismatches: 137, Indels: 68
0.92 0.05 0.03
Matches are distributed among these distances:
300 170 0.07
301 36 0.02
302 466 0.19
303 792 0.33
304 99 0.04
305 73 0.03
306 212 0.09
307 64 0.03
308 16 0.01
309 8 0.00
310 20 0.01
311 42 0.02
312 24 0.01
313 6 0.00
314 177 0.07
317 25 0.01
319 169 0.07
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (303 bp):
CTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGA
TGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATA
AAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAA
ATTATTCATTTCACAAAACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAA
AAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGA
Found at i:40164 original size:301 final size:302
Alignment explanation
Indices: 39367--42800 Score: 4394
Period size: 302 Copynumber: 11.3 Consensus size: 302
39357 NNGCAACTAA
39367 AAAAAAACATTATATGAAATAAAA-GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
1 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
* * *
39431 TCCTAGTACTACTCTCGCCCAAGCAAGCTGAACTGCGGAATTCTGATGGGATCCGGTGCATTAGT
66 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
39496 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
131 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
* *
39561 GTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAATTGTTTATTTCACAAAAC
196 CTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAATTGTCTATTTCACAAAAC
* *
39626 GCAAATAACGACTGAGCTACACCACGTCGAGAAAATGCAACT
261 GCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
* *
39668 AAAAAAACATTATATGAAATAAAATTGGAGGGGTGCAACACGAGGACTTCCCATGAGGTCACCCA
1 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
* * * *
39733 TCCTAGTACTACTCTCGCCCAAGCACGCTGACCTACGGAGTTCTGATGGGATCTGGTGCATTAGT
66 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
39798 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
131 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
* *
39863 CTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCATTTCAAATCT-TCTATTTCACGAAA
196 CTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAAT-TGTCTATTTCACAAAA
39927 CGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
260 CGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
39970 AAAAAAA-ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
1 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
* * *
40034 TCCTAGTACTACTCTCGCCCAAGCACGGTTAACTGCGGAGTTCTGAAGGGATCCGGTGCATTACT
66 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
*
40099 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTGATCGCA
131 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
* * * ***************
40164 CTTGCGCATCGAATTTAAATGCAAAATCGACCCCGAATATCNNNNNNNNNNNNNNNNNNNNNNNN
196 CTTGCGCCTCGAATTTAAATGCAAATTCGA--CCAAATATC---------GTTTCAAATTGTCTA
*****************************************************
40229 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
250 TTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
*****************************************************************
40282 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
************
40347 NNNNNNNNNNNNT-TCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
66 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
* *
40411 GCTGGTATGATCGCACCCGTCAACTCTTGCACAATCTATTCATATAAAGGCTGCCCCTTATCGTA
131 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
* * * *
40476 C-TGCGCCTCGAATTTAAATGCAAATTCGAGCAAATATCGTTTCAATTTAT-TCATTTCACACAA
196 CTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAATTGTCT-ATTTCACAAAA
* *
40539 CGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAAAT
260 CGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
*
40582 AAAAAAAACATTATATGAAATAAAATGAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
1 -AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
40647 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAG
65 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAG
* *
40712 TGCTGGTATGATCGCACCCCTCAACTCTTGCGCAATCTAATCATATAAAGGCTGCCCCCTTATCG
130 TGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG-CCCCTTATCG
* * *
40777 CAGTTGCGCCTCGAATTTAAATGCAAATTCGACAAAATATCGTTTCAAATTGTTTATTTCACAAA
194 CACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAATTGTCTATTTCACAAA
*
40842 ACGCAAATAACGATTGAGTTACACCACGTCGAGAAAATGCAACT
259 ACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
* *
40886 AGAAAAA-ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGACACCCA
1 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
* *
40950 TCCTAGTACTACTCTCGCCCAAGCACGGTTCACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
66 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
*
41015 GCTGGTATGATCGCACCCGCCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
131 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
* *
41080 GTTGCGCCTCGAATTTAAAATAGCAAAATTCGACCAAATATCGTTTCAAATTGTTTATTTCACAA
196 CTTGCGCCTCGAATTT-AAAT-GC-AAATTCGACCAAATATCGTTTCAAATTGTCTATTTCACAA
* *
41145 AACGCAAATAACGACTGAGCTACACCACGTCGAGAAAATGCAACT
258 AACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
*
41190 -AACAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
1 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
*
41254 TCCTAGTACTACTCTCGCCGAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
66 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
*
41319 GCTGGTATGATCGCACCCGCCAACTCTTGCGCAATCTATTCATATAAAGGCTGTCCCCTTATCGC
131 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG-CCCCTTATCGC
* * * * *
41384 AGTTGCGCCTCAAATTTAAATGCAAATTCGACCGAATATCGTTCCAACTTGTCTATTTCACAAAA
195 ACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAATTGTCTATTTCACAAAA
*
41449 CGCAAATAACGAATGATTTACACCACGTCGAGAAAATGCAACT
260 CGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
41492 AAAAAAAACATTATATGAAATAAAA-GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
1 -AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
* * *
41556 ATCCTAGTACTACTCTCGCCCAAGCAAGCTGAACTGCGGAATTCTGATGGGATCCGGTGCATTAG
65 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAG
41621 TGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGC
130 TGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGC
* *
41686 AGTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAATTGTTTATTTCACAAAA
195 ACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAATTGTCTATTTCACAAAA
* * *
41751 CGCAAATAACGACTGAGCTACACCGCGTCGAGAAAATGCAACT
260 CGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
* * *
41794 AAAAAAACATTATACGAAATAAAATTGGAGGGGTGCAACACGAGGACTTCCCATGAGGTCACCCA
1 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
* * * *
41859 TCCTAGTACTACTCTCGCCCAAGCACGCTGACCTACGGAGTTCTGATGGGATCTGGTGCATTAGT
66 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
*
41924 GCTGGGATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
131 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
*
41989 CTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAATCT-TCTATTTCACGAAA
196 CTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAAT-TGTCTATTTCACAAAA
42053 CGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
260 CGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
42096 AAAAAAA-ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
1 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
* * *
42160 TCCTAGTACTACTCTCGCCCAAGCACGGTTAACTGCGGAGTTCTGAAGGGATCCGGTGCATTACT
66 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
*
42225 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTGATCGCA
131 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
* * * * *
42290 CTTGCGCCTCGAATTTAAATGCAAAATCGACCCCGAATATCGTTCCAAATTATTTATTTCACAAA
196 CTTGCGCCTCGAATTTAAATGCAAATTCGA--CCAAATATCGTTTCAAATTGTCTATTTCACAAA
* * *
42355 ATGAAAATAACGAATGAGTTACACCGCGTCGAGAAAATGCAACT
259 ACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
* *
42399 AAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACCAGGACATCCCAGGAGGTCACCC
1 -AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
* * *
42464 ATCCTAGTACTACTCTCGCCCAAGCAAGCTGAACTGCGGAATTCTGATGGGATCCGGTGCATTAG
65 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAG
* *
42529 TGCTGGTATGATCGCACCCGTCAACTCTTGCACAATCTATTCATATAAAGGCTGCCCCTTATCGT
130 TGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGC
* *
42594 ACTTGCGCCTCGAATTTAAATGCAAATTCGAGCAAATATCGTTTCAAATCT-TCTATTTCACGAA
195 ACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAAT-TGTCTATTTCACAAA
42658 ACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
259 ACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
42702 -AAAAAA-ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
1 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
*
42765 TCCTAGTACTACTCTCGCCCAAGAACGCTTAACTGC
66 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGC
42801 NNNNNNNNNN
Statistics
Matches: 2661, Mismatches: 436, Indels: 73
0.84 0.14 0.02
Matches are distributed among these distances:
300 88 0.03
301 491 0.18
302 999 0.38
303 323 0.12
304 382 0.14
305 233 0.09
309 7 0.00
311 26 0.01
312 111 0.04
313 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.23
Consensus pattern (302 bp):
AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
CTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAATTGTCTATTTCACAAAAC
GCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
Found at i:41302 original size:606 final size:603
Alignment explanation
Indices: 39367--42800 Score: 4404
Period size: 606 Copynumber: 5.7 Consensus size: 603
39357 NNGCAACTAA
39367 AAAAAAACATTATATGAAATAAAA-GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
1 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
* *
39431 TCCTAGTACTACTCTCGCCCAAGCAAGCTGAACTGCGGAATTCTGATGGGATCCGGTGCATTAGT
66 TCCTAGTACTACTCTCGCCCAAGCACGCTGAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
39496 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
131 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
* *
39561 GTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAATTGTTTATTTCACAAAAC
196 CTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAATTGTCTATTTCACAAAAC
* *
39626 GCAAATAACGACTGAGCTACACCACGTCGAGAAAATGCAACTAAAAAAACATTATATGAAATAAA
261 GCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAAAAA-ATTATATGAAATAAA
* *
39691 ATTGGAGGGGTGCAACACGAGGACTTCCCATGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
325 ATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
* * * * *
39756 CACGCTGACCTACGGAGTTCTGATGGGATCTGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
390 CACGGTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
39821 CTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCA
455 CTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCA
* * *
39886 AATTCGACCAAATATCATTTCAAATCT-TCTATTTCACGAAACGCAAATAACGAATGAGTTACAC
520 AATTCGACCAAATATCGTTTCAAAT-TATTTATTTCACAAAACGCAAATAACGAATGAGTTACAC
39950 CACGTCGAGAAAATGCAACT
584 CACGTCGAGAAAATGCAACT
39970 AAAAAAA-ATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
1 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
* * * *
40034 TCCTAGTACTACTCTCGCCCAAGCACGGTTAACTGCGGAGTTCTGAAGGGATCCGGTGCATTACT
66 TCCTAGTACTACTCTCGCCCAAGCACGCTGAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
*
40099 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTGATCGCA
131 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
* * * **************
40164 CTTGCGCATCGAATTTAAATGCAAAATCGACCCCGAATATCNNNNNNNNNNNNNNNNNNNNNNNN
196 CTTGCGCCTCGAATTTAAATGCAAATTCGA--CCAAATATC----------GTTTCAAATTGTCT
*****************************************************************
40229 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
249 ATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAAAAAATTA
*****************************************************************
40294 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
314 TATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAC
*
40359 T-TCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC
379 TCTCGCCCAAGCACGGTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATC
* *
40423 GCACCCGTCAACTCTTGCACAATCTATTCATATAAAGGCTGCCCCTTATCGTAC-TGCGCCTCGA
444 GCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGA
* * * * *
40487 ATTTAAATGCAAATTCGAGCAAATATCGTTTCAATTTATTCATTTCACACAACGAAAATAACGAA
509 ATTTAAATGCAAATTCGACCAAATATCGTTTCAAATTATTTATTTCACAAAACGCAAATAACGAA
*
40552 TGAGTTACACCACGTCGAGAAAATGCAAAT
574 TGAGTTACACCACGTCGAGAAAATGCAACT
*
40582 AAAAAAAACATTATATGAAATAAAATGAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
1 -AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
*
40647 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAG
65 ATCCTAGTACTACTCTCGCCCAAGCACGCTGAACTGCGGAGTTCTGATGGGATCCGGTGCATTAG
* *
40712 TGCTGGTATGATCGCACCCCTCAACTCTTGCGCAATCTAATCATATAAAGGCTGCCCCCTTATCG
130 TGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG-CCCCTTATCG
* * *
40777 CAGTTGCGCCTCGAATTTAAATGCAAATTCGACAAAATATCGTTTCAAATTGTTTATTTCACAAA
194 CACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAATTGTCTATTTCACAAA
* *
40842 ACGCAAATAACGATTGAGTTACACCACGTCGAGAAAATGCAACTAGAAAAAATTATATGAAATAA
259 ACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAAAAAATTATATGAAATAA
*
40907 AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGACACCCATCCTAGTACTACTCTCGCCCAA
324 AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
* *
40972 GCACGGTTCACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGCCA
389 GCACGGTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCA
*
41037 ACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAGTTGCGCCTCGAATTTAAAATA
454 ACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTT-AAAT-
* * *
41102 GCAAAATTCGACCAAATATCGTTTCAAATTGTTTATTTCACAAAACGCAAATAACGACTGAGCTA
517 GC-AAATTCGACCAAATATCGTTTCAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTA
41167 CACCACGTCGAGAAAATGCAACT
581 CACCACGTCGAGAAAATGCAACT
*
41190 -AACAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
1 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
* *
41254 TCCTAGTACTACTCTCGCCGAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
66 TCCTAGTACTACTCTCGCCCAAGCACGCTGAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
*
41319 GCTGGTATGATCGCACCCGCCAACTCTTGCGCAATCTATTCATATAAAGGCTGTCCCCTTATCGC
131 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTG-CCCCTTATCGC
* * * * *
41384 AGTTGCGCCTCAAATTTAAATGCAAATTCGACCGAATATCGTTCCAACTTGTCTATTTCACAAAA
195 ACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAATTGTCTATTTCACAAAA
*
41449 CGCAAATAACGAATGATTTACACCACGTCGAGAAAATGCAACTAAAAAAAACATTATATGAAATA
260 CGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT-AAAAAAA-ATTATATGAAATA
41514 AAA-GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCA
323 AAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCA
* * * *
41578 AGCAAGCTGAACTGCGGAATTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTC
388 AGCACGGTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTC
*
41643 AACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCAGTTGCGCCTCGAATTTAAATG
453 AACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATG
* * *
41708 CAAATTCGACCAAATATCGTTTCAAATTGTTTATTTCACAAAACGCAAATAACGACTGAGCTACA
518 CAAATTCGACCAAATATCGTTTCAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACA
*
41773 CCGCGTCGAGAAAATGCAACT
583 CCACGTCGAGAAAATGCAACT
* * *
41794 AAAAAAACATTATACGAAATAAAATTGGAGGGGTGCAACACGAGGACTTCCCATGAGGTCACCCA
1 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
* * *
41859 TCCTAGTACTACTCTCGCCCAAGCACGCTGACCTACGGAGTTCTGATGGGATCTGGTGCATTAGT
66 TCCTAGTACTACTCTCGCCCAAGCACGCTGAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
*
41924 GCTGGGATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
131 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
*
41989 CTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAATCT-TCTATTTCACGAAA
196 CTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAAT-TGTCTATTTCACAAAA
42053 CGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAAAAAATTATATGAAATAAA
260 CGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAAAAAATTATATGAAATAAA
42118 ATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
325 ATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
* *
42183 CACGGTTAACTGCGGAGTTCTGAAGGGATCCGGTGCATTACTGCTGGTATGATCGCACCCGTCAA
390 CACGGTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAA
*
42248 CTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTGATCGCACTTGCGCCTCGAATTTAAATGCA
455 CTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCA
* * * * *
42313 AAATCGACCCCGAATATCGTTCCAAATTATTTATTTCACAAAATGAAAATAACGAATGAGTTACA
520 AATTCGA--CCAAATATCGTTTCAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACA
*
42378 CCGCGTCGAGAAAATGCAACT
583 CCACGTCGAGAAAATGCAACT
* *
42399 AAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACCAGGACATCCCAGGAGGTCACCC
1 -AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
* *
42464 ATCCTAGTACTACTCTCGCCCAAGCAAGCTGAACTGCGGAATTCTGATGGGATCCGGTGCATTAG
65 ATCCTAGTACTACTCTCGCCCAAGCACGCTGAACTGCGGAGTTCTGATGGGATCCGGTGCATTAG
* *
42529 TGCTGGTATGATCGCACCCGTCAACTCTTGCACAATCTATTCATATAAAGGCTGCCCCTTATCGT
130 TGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGC
* *
42594 ACTTGCGCCTCGAATTTAAATGCAAATTCGAGCAAATATCGTTTCAAATCT-TCTATTTCACGAA
195 ACTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAAT-TGTCTATTTCACAAA
42658 ACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT-AAAAAAATTATATGAAATAA
259 ACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAAAAAATTATATGAAATAA
42722 AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
324 AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
* *
42787 GAACGCTTAACTGC
389 GCACGGTTAACTGC
42801 NNNNNNNNNN
Statistics
Matches: 2386, Mismatches: 415, Indels: 58
0.83 0.15 0.02
Matches are distributed among these distances:
602 32 0.01
603 396 0.17
604 305 0.13
605 363 0.15
606 583 0.24
607 187 0.08
608 92 0.04
611 1 0.00
612 94 0.04
613 125 0.05
614 170 0.07
615 38 0.02
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.23
Consensus pattern (603 bp):
AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
TCCTAGTACTACTCTCGCCCAAGCACGCTGAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCA
CTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTTTCAAATTGTCTATTTCACAAAAC
GCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACTAAAAAAAATTATATGAAATAAAA
TGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
ACGGTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAAC
TCTTGCGCAATCTATTCATATAAAGGCTGCCCCTTATCGCACTTGCGCCTCGAATTTAAATGCAA
ATTCGACCAAATATCGTTTCAAATTATTTATTTCACAAAACGCAAATAACGAATGAGTTACACCA
CGTCGAGAAAATGCAACT
Found at i:43778 original size:305 final size:303
Alignment explanation
Indices: 43385--43995 Score: 1060
Period size: 305 Copynumber: 2.0 Consensus size: 303
43375 NNNNNNNNNN
* *
43385 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
1 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACCAGGACATCCCAGGAGGTCACCCA
*
43450 TCCTAGTACTACTCTCGCCCAAGCACGGTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
66 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
*
43515 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCATATAAAGGCTGCCCCTGATCGCA
131 GCTGGTATGATCGCACCCGTCAACTCTTGCACAATCTATTCATATAAAGGCTGCCCCTGATCGCA
* *
43580 CTTGCGCCTCGAATTTAAATGCAAAATCGACCCCGAATATCGTTCCAAATTATTTATTTCACAAA
196 CTTGCGCCTCGAATTTAAATGCAAAATCGA--CCAAATATCGTTCCAAATTATTCATTTCACAAA
* * *
43645 ATGAAAATAACGAATGAGTTACACCGCGTCGAGAAAATGCAACTA
259 ACGAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAAATA
43690 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACCAGGACATCCCAGGAGGTCACCCA
1 AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACCAGGACATCCCAGGAGGTCACCCA
43755 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
66 TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
* *
43820 GCTGGTATGATCGCACCCGTCAACTCTTGCACAATCTATTCATATAAAGGCTGCCCCTTATCGTA
131 GCTGGTATGATCGCACCCGTCAACTCTTGCACAATCTATTCATATAAAGGCTGCCCCTGATCGCA
* * * * *
43885 CTTGCGCCTCGAATTTAAATGCAAATTCGAGCAAATATCGTTTCAATTTATTCATTTCACACAAC
196 CTTGCGCCTCGAATTTAAATGCAAAATCGACCAAATATCGTTCCAAATTATTCATTTCACAAAAC
43950 GAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAAATA
261 GAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAAATA
43993 AAA
1 AAA
43996 NNNNNNNNNN
Statistics
Matches: 290, Mismatches: 16, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
303 72 0.25
305 218 0.75
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (303 bp):
AAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACCAGGACATCCCAGGAGGTCACCCA
TCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGT
GCTGGTATGATCGCACCCGTCAACTCTTGCACAATCTATTCATATAAAGGCTGCCCCTGATCGCA
CTTGCGCCTCGAATTTAAATGCAAAATCGACCAAATATCGTTCCAAATTATTCATTTCACAAAAC
GAAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAAATA
Found at i:46399 original size:303 final size:304
Alignment explanation
Indices: 45615--47408 Score: 3149
Period size: 303 Copynumber: 5.9 Consensus size: 304
45605 NNNNNNNNNN
45615 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGCCAACTCTTGCGCAATCTATTCAT
1 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGCCAACTCTTGCGCAATCTATTCAT
* * * * *
45680 ATAAAGGCTGCCCCCTCATCGCAGTTGCGCCCCCAAATATAAAAGCAAATTCGAGCAAATATCGT
66 ATAAAGGCTGCCCCCTTATCGCAGTTGCG-CCTCAAATTTAAATGCAAATTCGACCAAATATCGT
* *
45745 TTCAAATTGTTTTTTTCACACAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGTAA
130 TTCAAATTGTTTATTTCACA-AAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAA
45810 CTAAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCAC
194 CTAAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCAC
*
45875 CCATCCTAGTAATACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC
259 CCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC
45921 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGCCAACTCTTGCGCAATCTATTCAT
1 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGCCAACTCTTGCGCAATCTATTCAT
*
45986 ATAAAGGCTGCCCCCTTATCGCAGTTGCGCCTCAAATTTAAATGCAAATTCGACCGAATATCGTT
66 ATAAAGGCTGCCCCCTTATCGCAGTTGCGCCTCAAATTTAAATGCAAATTCGACCAAATATCGTT
* * *
46051 CCAAATTGTCTATTTCACAAAACGCAAATAACGAATGATTTACACCACGTCGAGAAAATGCAACT
131 TCAAATTGTTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
46116 AAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
196 AAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
46181 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC
261 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC
46225 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGCCAACTCTTGCGCAATCTATTCAT
1 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGCCAACTCTTGCGCAATCTATTCAT
46290 ATAAAGGCTG-CCCCTTATCGCAGTTGCGCCTCAAATTTAAATGCAAATTCGACCAAATATCGTT
66 ATAAAGGCTGCCCCCTTATCGCAGTTGCGCCTCAAATTTAAATGCAAATTCGACCAAATATCGTT
*
46354 TCAAATTGTTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGTAACT
131 TCAAATTGTTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
46419 AAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
196 AAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
*
46484 ATCCCAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC
261 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC
46528 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGCCAACTCTTGCGCAATCTATTCAT
1 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGCCAACTCTTGCGCAATCTATTCAT
*
46593 ATAAAGGCTGCCCCCTTATCGCAGTTGCGCCTCAAATTTAAATGCAAATTCGACCGAATATCGTT
66 ATAAAGGCTGCCCCCTTATCGCAGTTGCGCCTCAAATTTAAATGCAAATTCGACCAAATATCGTT
* * *
46658 CCAAATTGTCTATTTCACAAAACGCAAATAACGAATGATTTACACCACGTCGAGAAAATGCAACT
131 TCAAATTGTTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
46723 -AAAAAAACATTATATGAAATAAAA-GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
196 AAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
* * *
46786 ATCCTAGTACTACTCTCGCCCAAGCAAGCTGAACTGCGGAATTC
261 ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC
*
46830 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTCAT
1 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGCCAACTCTTGCGCAATCTATTCAT
*
46895 ATAAAGGCTG-CCCCTTATCGCAGTTGCGCCTCGAATTTAAATGCAAATTCGACCAAATATCGTT
66 ATAAAGGCTGCCCCCTTATCGCAGTTGCGCCTCAAATTTAAATGCAAATTCGACCAAATATCGTT
* *
46959 TCAAATTG-TTATTTCACAAAACGCAAATAACGATTGAGTTACACCACGTCGAGAAAATCCGAA-
131 TCAAATTGTTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGC-AAC
* *
47022 T-AAAAAAA-ATTATATGAAACAAAATGGAAGGGGTGCAACACGAGGACTT-CCACGGAAGGGTC
195 TAAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA-GG-A-GGTC
*
47084 ACCCATCCTAGTACTACTCTCGCCCATGCACGCTTAACTGCGGAGTTC
257 ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC
47132 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGCCAACTCTTGCGCAATCTATTCAT
1 TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGCCAACTCTTGCGCAATCTATTCAT
*
47197 ATAAAGGCTG-CCACTTATCGCAGTTGCGCCTCAAATTTAAATGCAAATTCGACCAAATATCGTT
66 ATAAAGGCTGCCCCCTTATCGCAGTTGCGCCTCAAATTTAAATGCAAATTCGACCAAATATCGTT
* *
47261 TCAAATTGTTTATTTCACAAAACGCAAATAACGAATGGGTTACACCACGTCGAGTAAATGCAACT
131 TCAAATTGTTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
* * * *
47326 AAAAAAAACATTATATGAAATAAAATGGGTGGGGTGCAACACAAGGACTTCCCAAGAGGTTACCC
196 AAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
47391 ATCCTAGTACTACTCTCG
261 ATCCTAGTACTACTCTCG
Statistics
Matches: 1423, Mismatches: 54, Indels: 25
0.95 0.04 0.02
Matches are distributed among these distances:
299 18 0.01
300 81 0.06
301 62 0.04
302 337 0.24
303 395 0.28
304 349 0.25
305 85 0.06
306 96 0.07
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.24
Consensus pattern (304 bp):
TGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGCCAACTCTTGCGCAATCTATTCAT
ATAAAGGCTGCCCCCTTATCGCAGTTGCGCCTCAAATTTAAATGCAAATTCGACCAAATATCGTT
TCAAATTGTTTATTTCACAAAACGCAAATAACGAATGAGTTACACCACGTCGAGAAAATGCAACT
AAAAAAAACATTATATGAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCC
ATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTC
Done.