Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_149 ID=scaffold_149-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15089
ACGTcount: A:0.25, C:0.12, G:0.12, T:0.22

Warning! 4355 characters in sequence are not A, C, G, or T


Found at i:11701 original size:16 final size:16

Alignment explanation


    Indices: 11682--11723  Score: 50
    Period size: 16  Copynumber: 2.6  Consensus size: 16

      11672 TATTTTTTAT

                             
      11682 ATATAAAAAAT-TAAAA
          1 ATATAAAAAATCT-AAA

                  * *       
      11698 ATATAATACATCTAAA
          1 ATATAAAAAATCTAAA

                      
      11714 ATATAAAAAA
          1 ATATAAAAAA

      11724 CATTAAAATA


Statistics
Matches: 21,  Mismatches: 4, Indels: 2
        0.78            0.15        0.07

Matches are distributed among these distances:
  16   20  0.95
  17    1  0.05

ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26


Consensus pattern (16 bp):   
ATATAAAAAATCTAAA

Found at i:11771 original size:13 final size:13

Alignment explanation


    Indices: 11753--11777  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

      11743 CAAAAAATTG

                         
      11753 AAAATAAATTTAA
          1 AAAATAAATTTAA

                        
      11766 AAAATAAATTTA
          1 AAAATAAATTTA

      11778 TACTTAAATA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32


Consensus pattern (13 bp):   
AAAATAAATTTAA
Done.