Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_153 ID=scaffold_153-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10685
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Found at i:4278 original size:15 final size:16
Alignment explanation
Indices: 4258--4293 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
4248 AAAAAGAATA
4258 AAAAAGAATAAAAA-G
1 AAAAAGAATAAAAAGG
4273 AAAAAGAATAAAAAGG
1 AAAAAGAATAAAAAGG
4289 AAAAA
1 AAAAA
4294 AAGAAAAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.70
16 6 0.30
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.06
Consensus pattern (16 bp):
AAAAAGAATAAAAAGG
Found at i:4286 original size:10 final size:10
Alignment explanation
Indices: 4247--4271 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
4237 ATTTAGAAAG
4247 AAAAAAGAAT
1 AAAAAAGAAT
4257 AAAAAAGAAT
1 AAAAAAGAAT
4267 AAAAA
1 AAAAA
4272 GAAAAAGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (10 bp):
AAAAAAGAAT
Found at i:4295 original size:10 final size:9
Alignment explanation
Indices: 4247--4302 Score: 55
Period size: 9 Copynumber: 6.4 Consensus size: 9
4237 ATTTAGAAAG
4247 AAAAAAGAA
1 AAAAAAGAA
4256 TAAAAAAGAA
1 -AAAAAAGAA
*
4266 TAAAAAG--
1 AAAAAAGAA
4273 -AAAAAGAA
1 AAAAAAGAA
* *
4281 TAAAAAGGA
1 AAAAAAGAA
4290 AAAAAAGAA
1 AAAAAAGAA
4299 AAAA
1 AAAA
4303 GAGATGCCAA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
6 6 0.15
9 24 0.62
10 9 0.23
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.05
Consensus pattern (9 bp):
AAAAAAGAA
Found at i:4300 original size:15 final size:16
Alignment explanation
Indices: 4243--4303 Score: 61
Period size: 16 Copynumber: 3.7 Consensus size: 16
4233 TTAGATTTAG
*
4243 AAAGAAAAAAGAATAAA
1 AAAGAAAAAAGGA-AAA
*
4260 AAAGAATAAAAAGAAAA
1 AAAGAA-AAAAGGAAAA
*
4277 AGAA-TAAAAAGGAAAA
1 A-AAGAAAAAAGGAAAA
4293 AAAGAAAAAAG
1 AAAGAAAAAAG
4304 AGATGCCAAG
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
15 2 0.06
16 16 0.44
17 11 0.31
18 7 0.19
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.05
Consensus pattern (16 bp):
AAAGAAAAAAGGAAAA
Found at i:4302 original size:25 final size:26
Alignment explanation
Indices: 4243--4304 Score: 101
Period size: 25 Copynumber: 2.5 Consensus size: 26
4233 TTAGATTTAG
4243 AAAGAAAAAAGAATAAAAAAGAATAA
1 AAAGAAAAAAGAATAAAAAAGAATAA
*
4269 AAAG-AAAAAGAATAAAAAGGAA-AA
1 AAAGAAAAAAGAATAAAAAAGAATAA
4293 AAAGAAAAAAGA
1 AAAGAAAAAAGA
4305 GATGCCAAGG
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
24 6 0.18
25 24 0.71
26 4 0.12
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.05
Consensus pattern (26 bp):
AAAGAAAAAAGAATAAAAAAGAATAA
Found at i:5119 original size:8 final size:8
Alignment explanation
Indices: 5106--5136 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
5096 AGTCGAACAA
5106 AAAAAATG
1 AAAAAATG
5114 AAAAAATG
1 AAAAAATG
5122 -AAAAATG
1 AAAAAATG
5129 AAAAAATG
1 AAAAAATG
5137 GAAAGTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 7 0.32
8 15 0.68
ACGTcount: A:0.74, C:0.00, G:0.13, T:0.13
Consensus pattern (8 bp):
AAAAAATG
Found at i:5127 original size:15 final size:15
Alignment explanation
Indices: 5107--5136 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
5097 GTCGAACAAA
5107 AAAAATGAAAAAATG
1 AAAAATGAAAAAATG
5122 AAAAATGAAAAAATG
1 AAAAATGAAAAAATG
5137 GAAAGTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (15 bp):
AAAAATGAAAAAATG
Found at i:5322 original size:44 final size:42
Alignment explanation
Indices: 5225--5338 Score: 106
Period size: 43 Copynumber: 2.7 Consensus size: 42
5215 AAAAAGGGCG
* *
5225 GCTCAAATTTTGGAACAAAATGGGGCATGAAGTGATCATAGC
1 GCTCAAATTTTGGATCAAAATGGGGCATGAAGTGATCAGAGC
* ** *
5267 GACAT-AAATTTTGGATCAAATTGGGGCATGGTGGTGATTAGAGC
1 G-C-TCAAATTTTGGATCAAAATGGGGCAT-GAAGTGATCAGAGC
* *
5311 AGCTCAAATTTT-GATCAGACTGGGGCAT
1 -GCTCAAATTTTGGATCAAAATGGGGCAT
5339 ATGATGATCT
Statistics
Matches: 59, Mismatches: 8, Indels: 9
0.78 0.11 0.12
Matches are distributed among these distances:
42 1 0.02
43 38 0.64
44 19 0.32
45 1 0.02
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.27
Consensus pattern (42 bp):
GCTCAAATTTTGGATCAAAATGGGGCATGAAGTGATCAGAGC
Found at i:6588 original size:50 final size:51
Alignment explanation
Indices: 6462--6802 Score: 173
Period size: 51 Copynumber: 6.8 Consensus size: 51
6452 AAACCATAGT
* * * *
6462 TTGC-AATTCAAAGATTGAGGCCACAACGGTAAATCTTACTTTCTCTGGCA
1 TTGCAAATTAAAAGATTGAGGCCACAACGGTAAATCTTACTTTCCCCGACA
* **** * * *
6512 GTGCAGCGGAAAAGATTGAAGCCACAATGGTAAATCTTGC-TTCCCCGACA
1 TTGCAAATTAAAAGATTGAGGCCACAACGGTAAATCTTACTTTCCCCGACA
* * * * *
6562 TTGCAAATTAAAAGATTGAGGCCACAACAGCAAATCTTACTTTCCCTGGCG
1 TTGCAAATTAAAAGATTGAGGCCACAACGGTAAATCTTACTTTCCCCGACA
* * * * * * * *
6613 GTG-TAGTGAAACAGATTGAAGCTACGACGGCT-AATCTCAC--TCCCCTGACA
1 TTGCAAATTAAA-AGATTGAGGCCACAACGG-TAAATCTTACTTTCCCC-GACA
** * * **
6663 TTGC-AATTAAAAGATTGAGGCCACAACGGCGAACCTTACTTTTCCATACGA
1 TTGCAAATTAAAAGATTGAGGCCACAACGGTAAATCTTACTTTCCCCGAC-A
** * * * * * ** **
6714 -TGC-CGTGGAACAGATTGAAGCTACAATGGCGAATCTCGC-TTCCCCGACA
1 TTGCAAAT-TAAAAGATTGAGGCCACAACGGTAAATCTTACTTTCCCCGACA
*
6763 TTGC-AATTAAAAGATTGAGGCCACAACGGTGAATCTTACT
1 TTGCAAATTAAAAGATTGAGGCCACAACGGTAAATCTTACT
6803 CACAGGCTGT
Statistics
Matches: 205, Mismatches: 73, Indels: 26
0.67 0.24 0.09
Matches are distributed among these distances:
49 50 0.24
50 70 0.34
51 85 0.41
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (51 bp):
TTGCAAATTAAAAGATTGAGGCCACAACGGTAAATCTTACTTTCCCCGACA
Found at i:6726 original size:100 final size:98
Alignment explanation
Indices: 6462--8095 Score: 941
Period size: 95 Copynumber: 16.7 Consensus size: 98
6452 AAACCATAGT
* ** * *
6462 TTGCAATTCAAAGATTGAGGCCACAACGGTAAATCTTACTTTCTC-TGGCAGTGCAGCGGAAAAG
1 TTGCAATTAAAAGATTGAGGCCACAACGGCGAATCTTACTTTC-CAT-GC-GTGCAGTGGAACAG
* * ** **
6526 ATTGAAGCCACAATGGTAAATCTTGCTTCCCCGACA
63 ATTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
* * * * *
6562 TTGCAAATTAAAAGATTGAGGCCACAACAGCAAATCTTACTTTCCCTGGCGGTGTAGTGAAACAG
1 TTGC-AATTAAAAGATTGAGGCCACAACGGCGAATCTTACTTTCCAT-GC-GTGCAGTGGAACAG
* *
6627 ATTGAAGCTACGACGGCTAATCTCAC-TCCCCTGACA
63 ATTGAAGCTACAACGGCGAATCTCACTTCCCC-GACA
* * *
6663 TTGCAATTAAAAGATTGAGGCCACAACGGCGAACCTTACTTTTCCATACGATGCCGTGGAACAGA
1 TTGCAATTAAAAGATTGAGGCCACAACGGCGAATCTTAC-TTTCCATGCG-TGCAGTGGAACAGA
* *
6728 TTGAAGCTACAATGGCGAATCTCGCTTCCCCGACA
64 TTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
* * *
6763 TTGCAATTAAAAGATTGAGGCCACAACGGTGAATCTTAC--TCACAGGCTGTGCAGTGGAACAAA
1 TTGCAATTAAAAGATTGAGGCCACAACGGCGAATCTTACTTTC-CATGC-GTGCAGTGGAACAGA
*
6826 TTAAAGCTACAACGGCGAATCTCACTTCCCCGACA
64 TTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
* * * * * * *
6861 TTGCAATTAAAAGATTGAAGCTACAACAGTGGATCTTACTTTCCTAGTG-TTACAGTGGAACAGA
1 TTGCAATTAAAAGATTGAGGCCACAACGGCGAATCTTACTTTCC-A-TGCGTGCAGTGGAACAGA
* * ** *
6925 TTGAAGCTACAACAGCGGATCTTGCTTCCTCG---
64 TTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
* * * ** * * *
6957 --GCAGTTAAAAAGATTGAAGCTACAACAACGGATCTTACTTTCCTAGTG-TTGCAGTTGAACAG
1 TTGCAATT-AAAAGATTGAGGCCACAACGGCGAATCTTACTTTCC-A-TGCGTGCAGTGGAACAG
* ** *
7019 ATTGAAGCTACAACAGC-AGATCTTGCTT--CC-TCA
63 ATTGAAGCTACAACGGCGA-ATCTCACTTCCCCGACA
* * ** * * * * *
7052 --GCAGTTAAGAAGATTGAAGCTGCAACAGTGGATCTTACTTTCTTAGTG-TTGCAGTGGAACAG
1 TTGCAATTAA-AAGATTGAGGCCACAACGGCGAATCTTACTTTC-CA-TGCGTGCAGTGGAACAG
** * **
7114 ATTGAAGCTACAATAGCGGATCTTGCTT---C--C-
63 ATTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
* * * * * * *
7144 TTGGAAGTTAAAAAGATTGAAGCTATAACAGCGGATCTTACTTTCCTAGTG-TTGCAGTGGAACA
1 TTGCAA-TT-AAAAGATTGAGGCCACAACGGCGAATCTTACTTTCC-A-TGCGTGCAGTGGAACA
* ** *
7208 GATTGAAGCTACAACAGC-AGATCTTGCTT--CC-TCA
62 GATTGAAGCTACAACGGCGA-ATCTCACTTCCCCGACA
* * * ** * * * *
7242 --GCAGTTAAGAAGATTGAAGCTACAATAGTGGATCTTACTTTCTTAGTG-TTGCAGTGGAACAG
1 TTGCAATTAA-AAGATTGAGGCCACAACGGCGAATCTTACTTTC-CA-TGCGTGCAGTGGAACAG
* ** * ** *
7304 GTTGAAGCTACAATAGCGGATCTTGCTTCCTCG---
63 ATTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
* * * * * *
7337 --GCAGTTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTG-TTGCAGTGGAACAG
1 TTGCAATT-AAAAGATTGAGGCCACAACGGCGAATCTTACTTTCC-A-TGCGTGCAGTGGAACAG
* * **
7399 ATTGAAGCTACAACAGCGGATCTTGCTTCCCCGACA
63 ATTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
* * ** * * *
7435 --G---TTAAAAAGATTGAAGCTACAACAACGGATCTTACTTTCCTAATG-TTGCAGTGGAACAT
1 TTGCAATT-AAAAGATTGAGGCCACAACGGCGAATCTTACTTTCC--ATGCGTGCAGTGGAACAG
** * ** *
7494 ATTGAAGCTACAACAACGGATCTTGCTTCCTCG---
63 ATTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
* * * * * * * ** * *
7527 --GTAGTTAAAAAGATTGAAGCTACAACAGCGAATCTTACTTCCCAAGAAATGTAGCGGAACAGA
1 TTGCAATT-AAAAGATTGAGGCCACAACGGCGAATCTTACTTTCCATG-CGTGCAGTGGAACAGA
*
7590 TTGAAGCTACGACGGCGAATCTCACTTCCCCGACA
64 TTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
* * * * * *
7625 TTGTAATTTAAAAGATTGAGGCCACAACGGTGGATCTTAC-TTCCAAGCGATGCAGCGGAACAAA
1 TTGCAA-TTAAAAGATTGAGGCCACAACGGCGAATCTTACTTTCCATGCG-TGCAGTGGAACAGA
* **
7689 TTGAAGCTACAATGGCGGGTCTCACTT-CCCGACA
64 TTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
* * * * **
7723 TTGCAATTTAAAAGATTGAGGGCACAACGCCGGATCTTAC-TTCCAAGCGATGCAGCAGAACAGA
1 TTGCAA-TTAAAAGATTGAGGCCACAACGGCGAATCTTACTTTCCATGCG-TGCAGTGGAACAGA
* * * * *
7787 TTGAAGATACGACAGCGAATCTCACTTCCCCAAAA
64 TTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
* * * *
7822 CTGCAATTTAAAAGATTGAGGCCGCAACGGCGGATCTTAC-TTCCAAGCGATGCAGTGGAACAGA
1 TTGCAA-TTAAAAGATTGAGGCCACAACGGCGAATCTTACTTTCCATGCG-TGCAGTGGAACAGA
* *
7886 TTGAAGCTACAACGGGGAATCTCACTTCCCCGATA
64 TTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
* * *
7921 TTGCAAGTTAAAAGATTAAAGTCC-CAACGGCGAATCTTA-TTTCCCA-GCGATGCAGAGGAACA
1 TTGCAA-TTAAAAGATT-GAGGCCACAACGGCGAATCTTACTTT-CCATGCG-TGCAGTGGAACA
* * *
7983 TATTGAAGCTACGACGGTGAATCTCACTTCCCCGACA
62 GATTGAAGCTACAACGGCGAATCTCACTTCCCCGACA
* * * * * * *
8020 TGGCAATTAAAATAGATTGAAGTCACGACGGCGAATCTTACTTTTCAGGCGATGCAGTAGAACAG
1 TTGCAATT-AAA-AGATTGAGGCCACAACGGCGAATCTTACTTTCCATGCG-TGCAGTGGAACAG
8085 ATTGAAGCTAC
63 ATTGAAGCTAC
8096 GGTGGTGAAT
Statistics
Matches: 1303, Mismatches: 169, Indels: 123
0.82 0.11 0.08
Matches are distributed among these distances:
92 1 0.00
93 4 0.00
94 12 0.01
95 545 0.42
96 8 0.01
97 4 0.00
98 171 0.13
99 263 0.20
100 176 0.14
101 119 0.09
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (98 bp):
TTGCAATTAAAAGATTGAGGCCACAACGGCGAATCTTACTTTCCATGCGTGCAGTGGAACAGATT
GAAGCTACAACGGCGAATCTCACTTCCCCGACA
Found at i:6990 original size:95 final size:95
Alignment explanation
Indices: 6869--7599 Score: 1129
Period size: 95 Copynumber: 7.7 Consensus size: 95
6859 CATTGCAATT
* *
6869 AAAAGATTGAAGCTACAACAGTGGATCTTACTTTCCTAGTGTTACAGTGGAACAGATTGAAGCTA
1 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTA
6934 CAACAGCGGATCTTGCTTCCTCGGCAGTTA
66 CAACAGCGGATCTTGCTTCCTCGGCAGTTA
* *
6964 AAAAGATTGAAGCTACAACAACGGATCTTACTTTCCTAGTGTTGCAGTTGAACAGATTGAAGCTA
1 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTA
* *
7029 CAACAGCAGATCTTGCTTCCTCAGCAGTTA
66 CAACAGCGGATCTTGCTTCCTCGGCAGTTA
* * * *
7059 AGAAGATTGAAGCTGCAACAGTGGATCTTACTTTCTTAGTGTTGCAGTGGAACAGATTGAAGCTA
1 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTA
* * *
7124 CAATAGCGGATCTTGCTTCCTTGGAAGTTA
66 CAACAGCGGATCTTGCTTCCTCGGCAGTTA
*
7154 AAAAGATTGAAGCTATAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTA
1 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTA
* *
7219 CAACAGCAGATCTTGCTTCCTCAGCAGTTA
66 CAACAGCGGATCTTGCTTCCTCGGCAGTTA
* * * * *
7249 AGAAGATTGAAGCTACAATAGTGGATCTTACTTTCTTAGTGTTGCAGTGGAACAGGTTGAAGCTA
1 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTA
*
7314 CAATAGCGGATCTTGCTTCCTCGGCAGTTA
66 CAACAGCGGATCTTGCTTCCTCGGCAGTTA
7344 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTA
1 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTA
* *
7409 CAACAGCGGATCTTGCTTCCCCGACAGTTA
66 CAACAGCGGATCTTGCTTCCTCGGCAGTTA
* * *
7439 AAAAGATTGAAGCTACAACAACGGATCTTACTTTCCTAATGTTGCAGTGGAACATATTGAAGCTA
1 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTA
* *
7504 CAACAACGGATCTTGCTTCCTCGGTAGTTA
66 CAACAGCGGATCTTGCTTCCTCGGCAGTTA
* * * *** * *
7534 AAAAGATTGAAGCTACAACAGCGAATCTTACTTCCCAAGAAATGTAGCGGAACAGATTGAAGCTA
1 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTA
7599 C
66 C
7600 GACGGCGAAT
Statistics
Matches: 574, Mismatches: 62, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
95 574 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.27
Consensus pattern (95 bp):
AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTA
CAACAGCGGATCTTGCTTCCTCGGCAGTTA
Found at i:7618 original size:95 final size:95
Alignment explanation
Indices: 6869--7700 Score: 1076
Period size: 95 Copynumber: 8.7 Consensus size: 95
6859 CATTGCAATT
* *
6869 AAAAGATTGAAGCTACAACAGTGGATCTTACTTTCCTAGTGTTACAGTGGAACAGATTGAAGCTA
1 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTA
*
6934 CAACAGCGGATCTTGCTTCCTCGGCAGTTA
66 CAACAGCGAATCTTGCTTCCTCGGCAGTTA
* *
6964 AAAAGATTGAAGCTACAACAACGGATCTTACTTTCCTAGTGTTGCAGTTGAACAGATTGAAGCTA
1 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTA
*
7029 CAACAGC-AGATCTTGCTTCCTCAGCAGTTA
66 CAACAGCGA-ATCTTGCTTCCTCGGCAGTTA
* * * *
7059 AGAAGATTGAAGCTGCAACAGTGGATCTTACTTTCTTAGTGTTGCAGTGGAACAGATTGAAGCTA
1 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTA
* * * *
7124 CAATAGCGGATCTTGCTTCCTTGGAAGTTA
66 CAACAGCGAATCTTGCTTCCTCGGCAGTTA
*
7154 AAAAGATTGAAGCTATAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTA
1 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTA
*
7219 CAACAGC-AGATCTTGCTTCCTCAGCAGTTA
66 CAACAGCGA-ATCTTGCTTCCTCGGCAGTTA
* * * * *
7249 AGAAGATTGAAGCTACAATAGTGGATCTTACTTTCTTAGTGTTGCAGTGGAACAGGTTGAAGCTA
1 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTA
* *
7314 CAATAGCGGATCTTGCTTCCTCGGCAGTTA
66 CAACAGCGAATCTTGCTTCCTCGGCAGTTA
7344 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTA
1 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTA
* * *
7409 CAACAGCGGATCTTGCTTCCCCGACAGTTA
66 CAACAGCGAATCTTGCTTCCTCGGCAGTTA
* * *
7439 AAAAGATTGAAGCTACAACAACGGATCTTACTTTCCTAATGTTGCAGTGGAACATATTGAAGCTA
1 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTA
* * *
7504 CAACAACGGATCTTGCTTCCTCGGTAGTTA
66 CAACAGCGAATCTTGCTTCCTCGGCAGTTA
* * * *** * *
7534 AAAAGATTGAAGCTACAACAGCGAATCTTACTTCCCAAGAAATGTAGCGGAACAGATTGAAGCTA
1 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTA
* * ** * * *
7599 CGACGGCGAATCTCACTTCCCCGACATTGTAATTT
66 CAACAGCGAATCTTGCTTCCTCGGCA--G---TTA
* * * * * * * * *
7634 AAAAGATTGAGGCCACAACGGTGGATCTTAC-TTCCAAGCGATGCAGCGGAACAAATTGAAGCTA
1 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTA
7698 CAA
66 CAA
7701 TGGCGGGTCT
Statistics
Matches: 645, Mismatches: 83, Indels: 14
0.87 0.11 0.02
Matches are distributed among these distances:
95 586 0.91
97 1 0.00
99 30 0.05
100 28 0.04
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (95 bp):
AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTA
CAACAGCGAATCTTGCTTCCTCGGCAGTTA
Found at i:7620 original size:190 final size:190
Alignment explanation
Indices: 6812--7898 Score: 1161
Period size: 190 Copynumber: 5.6 Consensus size: 190
6802 TCACAGGCTG
* * * **
6812 TGCAGTGGAACAAATTAAAGCTACAACGGCGAATCTCACTTCCCCGACA-TTGCAATTAAAAGAT
1 TGCAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACAGTT---A--AAAAGAT
*
6876 TGAAGCTACAACAGTGGATCTTACTTTCCTAGTGTTACAGTGGAACAGATTGAAGCTACAACAGC
61 TGAAGCTACAACAGTGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTACAACAGC
*
6941 GGATCTTGCTTCCTCGGCAGTTAAAAAGATTGAAGCTACAACAACGGATCTTACTTTCCTAGTGT
126 GGATCTTGCTTCCTCGGCAGTTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGT
* * *
7006 TGCAGTTGAACAGATTGAAGCTACAACAGC-AGATCTTGCTTCCTC-AGCAGTTAAGAAGATTGA
1 TGCAGTGGAACAGATTGAAGCTACAACAGCGA-ATCTTGCTTCCCCGA-CAGTTAAAAAGATTGA
* * *
7069 AGCTGCAACAGTGGATCTTACTTTCTTAGTGTTGCAGTGGAACAGATTGAAGCTACAATAGCGGA
64 AGCTACAACAGTGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTACAACAGCGGA
* * *
7134 TCTTGCTTCCTTGGAAGTTAAAAAGATTGAAGCTATAACAGCGGATCTTACTTTCCTAGTGT
129 TCTTGCTTCCTCGGCAGTTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGT
* *
7196 TGCAGTGGAACAGATTGAAGCTACAACAGC-AGATCTTGCTTCCTC-AGCAGTTAAGAAGATTGA
1 TGCAGTGGAACAGATTGAAGCTACAACAGCGA-ATCTTGCTTCCCCGA-CAGTTAAAAAGATTGA
* * * *
7259 AGCTACAATAGTGGATCTTACTTTCTTAGTGTTGCAGTGGAACAGGTTGAAGCTACAATAGCGGA
64 AGCTACAACAGTGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTACAACAGCGGA
7324 TCTTGCTTCCTCGGCAGTTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGT
129 TCTTGCTTCCTCGGCAGTTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGT
*
7386 TGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTGCTTCCCCGACAGTTAAAAAGATTGAAG
1 TGCAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACAGTTAAAAAGATTGAAG
** * * *
7451 CTACAACAACGGATCTTACTTTCCTAATGTTGCAGTGGAACATATTGAAGCTACAACAACGGATC
66 CTACAACAGTGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTACAACAGCGGATC
* * * * ***
7516 TTGCTTCCTCGGTAGTTAAAAAGATTGAAGCTACAACAGCGAATCTTACTTCCCAAGAAA
131 TTGCTTCCTCGGCAGTTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGT
* * * * ** *
7576 TGTAGCGGAACAGATTGAAGCTACGACGGCGAATCTCACTTCCCCGACATTGTAATTTAAAAGAT
1 TGCAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACA--G---TTAAAAAGAT
* * * * * * * * **
7641 TGAGGCCACAACGGTGGATCTTAC-TTCCAAGCGATGCAGCGGAACAAATTGAAGCTACAATGGC
61 TGAAGCTACAACAGTGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTACAACAGC
* ** * * *
7705 GGGTCTCACTTCC-CGACATTGCAATTTAAAAGATTGAGGGC-ACAAC-GCCGGATCTTAC-TTC
126 GGATCTTGCTTCCTCG-----GCAGTTAAAAAGATTGA-AGCTACAACAG-CGGATCTTACTTTC
* * *
7766 CAAGCGA
184 CTAGTGT
** * * ** * * *
7773 TGCAGCAGAACAGATTGAAGATACGACAGCGAATCTCACTTCCCCAAAACTGCAATTTAAAAGAT
1 TGCAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCC--GA---CAGTTAAAAAGAT
* ** * * * * *
7838 TGAGGCCGCAACGGCGGATCTTAC-TTCCAAGCGATGCAGTGGAACAGATTGAAGCTACAAC
61 TGAAGCTACAACAGTGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTACAAC
7899 GGGGAATCTC
Statistics
Matches: 785, Mismatches: 86, Indels: 41
0.86 0.09 0.04
Matches are distributed among these distances:
190 521 0.66
191 1 0.00
192 2 0.00
193 4 0.01
194 79 0.10
195 30 0.04
197 115 0.15
198 28 0.04
199 3 0.00
202 2 0.00
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (190 bp):
TGCAGTGGAACAGATTGAAGCTACAACAGCGAATCTTGCTTCCCCGACAGTTAAAAAGATTGAAG
CTACAACAGTGGATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTACAACAGCGGATC
TTGCTTCCTCGGCAGTTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGTGT
Found at i:7765 original size:49 final size:49
Alignment explanation
Indices: 7601--7766 Score: 124
Period size: 49 Copynumber: 3.4 Consensus size: 49
7591 TGAAGCTACG
* * *
7601 ACGGCGAATCTCACTTCCCCGACATTGTAATTTAAAAGATTGAGGCCACA
1 ACGGCGGATCTCACTT-CCCGACATTGCAATTTAAAAGATTGAGGGCACA
* * * **** *
7651 ACGGTGGATCTTACTT-CCAAGCGA-TGCAGCGGAACAA-ATTGA-AGCTACA
1 ACGGCGGATCTCACTTCCCGA-C-ATTGCAATTTAA-AAGATTGAGGGC-ACA
* *
7700 ATGGCGGGTCTCACTTCCCGACATTGCAATTTAAAAGATTGAGGGCACA
1 ACGGCGGATCTCACTTCCCGACATTGCAATTTAAAAGATTGAGGGCACA
* *
7749 ACGCCGGATCTTACTTCC
1 ACGGCGGATCTCACTTCC
7767 AAGCGATGCA
Statistics
Matches: 83, Mismatches: 25, Indels: 17
0.66 0.20 0.14
Matches are distributed among these distances:
48 7 0.08
49 55 0.66
50 21 0.25
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (49 bp):
ACGGCGGATCTCACTTCCCGACATTGCAATTTAAAAGATTGAGGGCACA
Found at i:7788 original size:49 final size:49
Alignment explanation
Indices: 7637--7914 Score: 129
Period size: 49 Copynumber: 5.7 Consensus size: 49
7627 GTAATTTAAA
* * *
7637 AGATTGAGGCCACAACGGTGGATCTTACTTCCAAGCGATGCAGCGGAAC
1 AGATTGAGGGCACAACGGCGGATCTTACTTCCAAGCGATGCAGCAGAAC
* * * * * * **** *
7686 AAATTGA-AGCTACAATGGCGGGTCTCACTTCC-CGAC-ATTGCAATTTAAA
1 AGATTGAGGGC-ACAACGGCGGATCTTACTTCCAAG-CGA-TGCAGCAGAAC
*
7735 AGATTGAGGGCACAACGCCGGATCTTACTTCCAAGCGATGCAGCAGAAC
1 AGATTGAGGGCACAACGGCGGATCTTACTTCCAAGCGATGCAGCAGAAC
* ** * * * * * **** *
7784 AGATTGAAGATACGACAGCGAATCTCACTTCCCCAA--AACTGCAATTTAAA
1 AGATTGAGGGCACAACGGCGGATCTTACTT--CCAAGCGA-TGCAGCAGAAC
* * **
7834 AGATTGAGGCCGCAACGGCGGATCTTACTTCCAAGCGATGCAGTGGAAC
1 AGATTGAGGGCACAACGGCGGATCTTACTTCCAAGCGATGCAGCAGAAC
* *
7883 AGATTGA-AGCTACAACGG-GGAATCTCACTTCC
1 AGATTGAGGGC-ACAACGGCGG-ATCTTACTTCC
7915 CCGATATTGC
Statistics
Matches: 160, Mismatches: 56, Indels: 26
0.66 0.23 0.11
Matches are distributed among these distances:
48 10 0.06
49 113 0.71
50 33 0.21
51 4 0.03
ACGTcount: A:0.32, C:0.24, G:0.23, T:0.21
Consensus pattern (49 bp):
AGATTGAGGGCACAACGGCGGATCTTACTTCCAAGCGATGCAGCAGAAC
Found at i:8250 original size:44 final size:43
Alignment explanation
Indices: 8149--8655 Score: 340
Period size: 44 Copynumber: 11.7 Consensus size: 43
8139 AAAATCGCAG
* * *
8149 ATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATC---GTATCTA
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-CAAAGAATCCA
* * * * *
8190 GTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACAAACGAAACCA
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGACAAA-GAATCCA
* * ** **
8234 ATCCTATCTCTCTGAAGTTACAGTAGAGTGGATTAA-AATCACA
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGACAAAGAATC-CA
*
8277 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATC---GCATCCA
1 -ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-CAAAGAATCCA
* * * *
8319 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCA
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGACA-AAGAATCCA
* * * * * **
8363 ATCCTATCTCTCTAAAGTTACAGTAAAGCGGATTAA-AATCACA
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGACAAAGAATC-CA
* * *
8406 GATCTTATCTCTCTGAAGTTACAGTGGAGCAGACAGAAGAAACCA
1 -ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGACA-AAGAATCCA
* * * ** *
8451 ATCCTATCTCTCTAAAGTTGCAGTAGAGCGGATTAA-AATCATA
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGACAAAGAATC-CA
*
8494 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATC--A-CATCCA
1 -ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-CAAAGAATCCA
* * * *
8536 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAGAAGAAGT-CA
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGACA-AAGAA-TCCA
* * * * ** *
8580 ATCCTATCTCCCTGAAGTTGCAGTGGAGCTGATTAA-AACCGCAA
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGACAAAGAATC-C-A
*
8624 ATCTTATTTCTCTGAAGTTGCAGTAGAGCAGA
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA
8656 TCGCATCAGA
Statistics
Matches: 360, Mismatches: 79, Indels: 51
0.73 0.16 0.10
Matches are distributed among these distances:
40 2 0.01
41 85 0.24
42 14 0.04
43 20 0.06
44 231 0.64
45 5 0.01
46 3 0.01
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (43 bp):
ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGACAAAGAATCCA
Found at i:8369 original size:129 final size:129
Alignment explanation
Indices: 8134--8438 Score: 495
Period size: 129 Copynumber: 2.4 Consensus size: 129
8124 CAGTTAAACA
* * * *
8134 GATTGAAAATCGCAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCGTATCTAGTCTTATCT
1 GATT-AAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCT
* * * *
8199 CCCTGAAGTTGTAGTGGAGCAGACAAACGAAACCAATCCTATCTCTCTGAAGTTACAGTAGAGTG
65 CCCTGAAGTTGCAGTGGAGCAGACAAACGAAACCAATCCTATCTCTCTAAAGTTACAGTAAAGCG
8264 GATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTC
1 GATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTC
8329 CCTGAAGTTGCAGTGGAGCAGACAGAA-GAAACCAATCCTATCTCTCTAAAGTTACAGTAAAGCG
66 CCTGAAGTTGCAGTGGAGCAGACA-AACGAAACCAATCCTATCTCTCTAAAGTTACAGTAAAGCG
* *
8393 GATTAAAATCACAGATCTTATCTCTCTGAAGTTACAGTGGAGCAGA
1 GATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA
8439 CAGAAGAAAC
Statistics
Matches: 164, Mismatches: 10, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
129 158 0.96
130 6 0.04
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (129 bp):
GATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAGTCTTATCTC
CCTGAAGTTGCAGTGGAGCAGACAAACGAAACCAATCCTATCTCTCTAAAGTTACAGTAAAGCG
Found at i:8541 original size:129 final size:131
Alignment explanation
Indices: 8233--8663 Score: 392
Period size: 129 Copynumber: 3.3 Consensus size: 131
8223 AAACGAAACC
* * ** * * * *
8233 AATCCTATCTCTCTGAAGTTACAGTAGAGTGGATTAAAATCACAGATCTTATCTCTCTGAAGTTG
1 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCACATCACAGATCTTATCTCCCTGAAGTTA
* * * * * * * * *
8298 CAGT--AG-AG-CAGATCGCATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CAGAAGA
65 CAGTGGAGCAGACAGA-AGAAACCAATCCTATCTCCCTAAAGTTGCAGTAGAGCGGATTA-AA-A
* *
8358 -AACC
127 CCACA
* * * * * * * *
8362 AATCCTATCTCTCTAAAGTTACAGTAAAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTA
1 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-TCACATCACAGATCTTATCTCCCTGAAGTTA
* *
8427 CAGTGGAGCAGACAGAAGAAACCAATCCTATCTCTCTAAAGTTGCAGTAGAGCGGATTAAAATCA
65 CAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTAGAGCGGATTAAAACCA
*
8492 TA
130 CA
* *
8494 GATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATC-CAG-TCTTATCTCCCTGAAGTTGC
1 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCACAGATCTTATCTCCCTGAAGTTAC
* ** * * * *
8557 AGTGGAGCAGATAGAAGAAGTCAATCCTATCTCCCTGAAGTTGCAGTGGAGCTGATTAAAACCGC
66 AGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTAGAGCGGATTAAAACCAC
8622 A
131 A
* *
8623 AATCTTATTTCTCTGAAGTTGCAGTAGAGCAGATCGCATCA
1 AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCA
8664 GATTTTATTT
Statistics
Matches: 255, Mismatches: 40, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
129 176 0.69
130 3 0.01
131 8 0.03
132 63 0.25
133 5 0.02
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (131 bp):
AATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCACAGATCTTATCTCCCTGAAGTTAC
AGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTAAAGTTGCAGTAGAGCGGATTAAAACCAC
A
Found at i:8566 original size:217 final size:217
Alignment explanation
Indices: 8191--8655 Score: 716
Period size: 217 Copynumber: 2.1 Consensus size: 217
8181 TCGTATCTAG
* * *
8191 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACAAACGAAACCAATCCTATCTCTCTGAAGTTACA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACAAACGAAACCAATCCTATCTCTCTAAAGTTACA
* *
8256 GTAGAGTGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAGT
66 GTAGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCCAGT
*
8321 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCCTATCTCTCTAAAGTTACAG
131 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTAAAGTTACAG
* *
8386 TAAAGCGGATTAAAATCACAGA
196 TAAAGCGGATTAAAACCACAAA
* *
8408 TCTTATCTCTCTGAAGTTACAGTGGAGCAGACAGAA-GAAACCAATCCTATCTCTCTAAAGTTGC
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACA-AACGAAACCAATCCTATCTCTCTAAAGTTAC
*
8472 AGTAGAGCGGATTAAAATCATAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCCAG
65 AGTAGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCCAG
* ** * *
8537 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAGAAGAAGTCAATCCTATCTCCCTGAAGTTGCA
130 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTAAAGTTACA
** * *
8602 GTGGAGCTGATTAAAACCGCAAA
195 GTAAAGCGGATTAAAACCACAAA
* *
8625 TCTTATTTCTCTGAAGTTGCAGTAGAGCAGA
1 TCTTATCTCTCTGAAGTTGCAGTGGAGCAGA
8656 TCGCATCAGA
Statistics
Matches: 224, Mismatches: 23, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
217 222 0.99
218 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (217 bp):
TCTTATCTCTCTGAAGTTGCAGTGGAGCAGACAAACGAAACCAATCCTATCTCTCTAAAGTTACA
GTAGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATCCAGT
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCCTAAAGTTACAG
TAAAGCGGATTAAAACCACAAA
Done.