Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_156 ID=scaffold_156-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10609
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.33


Found at i:3476 original size:23 final size:23

Alignment explanation


    Indices: 3432--3476  Score: 54
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       3422 CCCACTTCTA

                      *  * * *     
       3432 ATATAATTAATTAGTTATAAATT
          1 ATATAATTAACTAATAAAAAATT

                                  
       3455 ATATAATTAACTAATAAAAAAT
          1 ATATAATTAACTAATAAAAAAT

       3477 ATTATAAAAC


Statistics
Matches: 18,  Mismatches: 4, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  23   18  1.00

ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40


Consensus pattern (23 bp):   
ATATAATTAACTAATAAAAAATT
Done.