Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_17 ID=scaffold_17-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 217810
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.32
Warning! 3895 characters in sequence are not A, C, G, or T
Found at i:49 original size:22 final size:22
Alignment explanation
Indices: 21--173 Score: 225
Period size: 22 Copynumber: 7.0 Consensus size: 22
11 TGTTGATAGT
*
21 ACGTACTAAGCTCTCATGTTTC
1 ACGTACTAAGCTCTCATGTTTA
43 ACGTACTAAGCTCTCATGTTTA
1 ACGTACTAAGCTCTCATGTTTA
65 ACGTACTAAGCTCTCATGTTTA
1 ACGTACTAAGCTCTCATGTTTA
* * * **
87 ACGAACTAAACCCTCATGGCTA
1 ACGTACTAAGCTCTCATGTTTA
**
109 ACGTACTAAGCTCTCATGGCTA
1 ACGTACTAAGCTCTCATGTTTA
*
131 ACGTACTAAGCTCTCATGTTTC
1 ACGTACTAAGCTCTCATGTTTA
153 ACGTACTAAGCTCTCATGTTT
1 ACGTACTAAGCTCTCATGTTT
174 GAACAATAAA
Statistics
Matches: 119, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 119 1.00
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (22 bp):
ACGTACTAAGCTCTCATGTTTA
Found at i:10734 original size:43 final size:43
Alignment explanation
Indices: 10683--11038 Score: 541
Period size: 43 Copynumber: 8.3 Consensus size: 43
10673 TTTTTTCTAA
*
10683 AAACGCCGCTAAAGACCAAGACCTTTAGCGGAGCTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
*
10726 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGTTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
* * *
10769 AAACGTCGCTAAATACCAAGACCTTTAGCGGCGTTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
* * * *
10812 AAACGTCGCTAAATACCAAGACCTTTAGCGGCGCTTTCCCCAA
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
*
10855 AAACGCCGCTAAAGACCAAGACCTTTAGCGGTGCTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
* * * * *
10898 AAAGGCCGCTAAAGACCAAGACCTTTAGTGGCGCTTTTACTAA
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
* * *
10941 AAACGCCGCTAAAGACCAAAACCTTTAACGACGCTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
*
10984 AAAGGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
11027 AAACGCCGCTAA
1 AAACGCCGCTAA
11039 GAACATGACT
Statistics
Matches: 282, Mismatches: 31, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 282 1.00
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.21
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTCCCAC
Found at i:11256 original size:18 final size:18
Alignment explanation
Indices: 11233--11292 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
11223 TTAAAACAAG
11233 TTACATTCTATATTAGAA
1 TTACATTCTATATTAGAA
*** * *
11251 TTACATAAGAAAATT-G-T
1 TTACAT-TCTATATTAGAA
11268 TTACATTCTATATTAGAA
1 TTACATTCTATATTAGAA
11286 TTACATT
1 TTACATT
11293 AGAATACTTA
Statistics
Matches: 29, Mismatches: 10, Indels: 6
0.64 0.22 0.13
Matches are distributed among these distances:
16 4 0.14
17 7 0.24
18 14 0.48
19 4 0.14
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43
Consensus pattern (18 bp):
TTACATTCTATATTAGAA
Found at i:15945 original size:106 final size:106
Alignment explanation
Indices: 15718--15963 Score: 309
Period size: 106 Copynumber: 2.3 Consensus size: 106
15708 GTCTATAGAT
** * **
15718 CTATAGCGGCATTTTTTTAAAAGCGCCGCTAATGCCACCAAAGCTTAATGGCGTTATGCTTAATT
1 CTATAGCGGCATTTTTCAAAAAGCGCCGCTAATGCCACCAAAGCTCAACAGCGTTATGCTTAATT
* * * *
15783 CTTTTTGCAGCGTTTTTCAAAAAGCACTGTTAATGCTTGAT
66 CTTTTTGCAGCGTTTTTCAAAAAGCACCGCTAATGCTCGAC
*
15824 CTATAGCGGCATTTTTCAAAAAGCGCCGCTAATGCCACCAAAGCTCAACAGCGTTGTGCTTAATT
1 CTATAGCGGCATTTTTCAAAAAGCGCCGCTAATGCCACCAAAGCTCAACAGCGTTATGCTTAATT
* ** *
15889 -TTTTTGC-GATGTTTTTCAAAAAGTGCCGCTAGTGCTCGAC
66 CTTTTTGCAG-CGTTTTTCAAAAAGCACCGCTAATGCTCGAC
* *
15929 CTATAGCGCCACTTTTTGAAAAA-CGCCGCTAATGC
1 CTATAGCGGCA-TTTTTCAAAAAGCGCCGCTAATGC
15964 TAGTTCTATA
Statistics
Matches: 122, Mismatches: 16, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
104 1 0.01
105 52 0.43
106 69 0.57
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (106 bp):
CTATAGCGGCATTTTTCAAAAAGCGCCGCTAATGCCACCAAAGCTCAACAGCGTTATGCTTAATT
CTTTTTGCAGCGTTTTTCAAAAAGCACCGCTAATGCTCGAC
Found at i:15973 original size:40 final size:40
Alignment explanation
Indices: 15899--16054 Score: 170
Period size: 40 Copynumber: 3.9 Consensus size: 40
15889 TTTTTGCGAT
* * * * *
15899 GTTTTTCAAAAAGTGCCGCTAGTGCTCGACCTATAGCGCCA
1 GTTTTTCAAAAAGCGCCGCTAATGCTAGATCTATAGCG-GA
* * *
15940 CTTTTTGAAAAA-CGCCGCTAATGCTAGTTCTATAGCGGA
1 GTTTTTCAAAAAGCGCCGCTAATGCTAGATCTATAGCGGA
* * * *
15979 GTTCTTCAAAAAGCGCTGCTAATGCTTGATCTATAGCGGT
1 GTTTTTCAAAAAGCGCCGCTAATGCTAGATCTATAGCGGA
* *
16019 GTTTTTCAAAAAGCGCCGCTAATGCGATATCTATAG
1 GTTTTTCAAAAAGCGCCGCTAATGCTAGATCTATAG
16055 TGGCATTTTT
Statistics
Matches: 94, Mismatches: 20, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
39 10 0.11
40 74 0.79
41 10 0.11
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (40 bp):
GTTTTTCAAAAAGCGCCGCTAATGCTAGATCTATAGCGGA
Found at i:20669 original size:23 final size:23
Alignment explanation
Indices: 20639--20693 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
20629 TTGAAGGTCC
20639 ATCTACAAGCTTATGGAAACATA
1 ATCTACAAGCTTATGGAAACATA
20662 ATCTACAAGCTTATGGAAACATA
1 ATCTACAAGCTTATGGAAACATA
*
20685 ATCTTCAAG
1 ATCTACAAG
20694 GATATGCAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.27
Consensus pattern (23 bp):
ATCTACAAGCTTATGGAAACATA
Found at i:20741 original size:21 final size:19
Alignment explanation
Indices: 20694--20768 Score: 123
Period size: 19 Copynumber: 3.8 Consensus size: 19
20684 AATCTTCAAG
20694 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
20713 GGTATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
20732 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
20753 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
20769 AGATATGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
19 34 0.65
21 18 0.35
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:20794 original size:22 final size:22
Alignment explanation
Indices: 20707--20791 Score: 54
Period size: 19 Copynumber: 4.0 Consensus size: 22
20697 ATGCAATCTT
* *
20707 AGATATGGTATGCAATCTTAG-
1 AGATATGATATGCAATATTAGA
* *
20728 ATATGAT-ATATGCAATCTT---
1 AGAT-ATGATATGCAATATTAGA
*
20747 AGATATGATATGCAATCTTAGA
1 AGATATGATATGCAATATTAGA
* *
20769 AGATATGATTTTGTAATATTAGA
1 AGATATGA-TATGCAATATTAGA
20792 GATTTAATTT
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
18 2 0.04
19 15 0.29
21 14 0.27
22 10 0.19
23 11 0.21
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.38
Consensus pattern (22 bp):
AGATATGATATGCAATATTAGA
Found at i:21515 original size:27 final size:25
Alignment explanation
Indices: 21485--21548 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 25
21475 TATATTTTTT
21485 TATTTTTTTATAAT-TCACATACATATA
1 TATTTTTTTATAATGT-ACAT--ATATA
21512 TATTTTTCTTAT-ATGTACATATATA
1 TATTTTT-TTATAATGTACATATATA
21537 TATTTTTTTATA
1 TATTTTTTTATA
21549 TTTTATAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
24 4 0.12
25 12 0.35
27 13 0.38
28 5 0.15
ACGTcount: A:0.33, C:0.08, G:0.02, T:0.58
Consensus pattern (25 bp):
TATTTTTTTATAATGTACATATATA
Found at i:21531 original size:23 final size:24
Alignment explanation
Indices: 21504--21549 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
21494 ATAATTCACA
21504 TACATATATAT-TTTTCTTATATG
1 TACATATATATATTTTCTTATATG
*
21527 TACATATATATATTTTTTTATAT
1 TACATATATATATTTTCTTATAT
21550 TTTATAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.59
Consensus pattern (24 bp):
TACATATATATATTTTCTTATATG
Found at i:26586 original size:18 final size:19
Alignment explanation
Indices: 26534--26589 Score: 71
Period size: 19 Copynumber: 3.1 Consensus size: 19
26524 GATCCAATTC
*
26534 AAAA-AAAAACCCAAAAAA
1 AAAACAAAAACACAAAAAA
26552 AAAACAAAAACACAAAAAA
1 AAAACAAAAACACAAAAAA
* *
26571 AAACCAAAAA-AGAAAAAA
1 AAAACAAAAACACAAAAAA
26589 A
1 A
26590 TCAAAATCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
18 12 0.35
19 22 0.65
ACGTcount: A:0.84, C:0.14, G:0.02, T:0.00
Consensus pattern (19 bp):
AAAACAAAAACACAAAAAA
Found at i:26601 original size:20 final size:20
Alignment explanation
Indices: 26578--26616 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
26568 AAAAAACCAA
26578 AAAAGAAAAAAATCAAAATC
1 AAAAGAAAAAAATCAAAATC
** *
26598 AAAATTAAAAAATGAAAAT
1 AAAAGAAAAAAATCAAAAT
26617 GACAAAAAGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.15
Consensus pattern (20 bp):
AAAAGAAAAAAATCAAAATC
Found at i:27958 original size:44 final size:44
Alignment explanation
Indices: 27895--28346 Score: 554
Period size: 44 Copynumber: 10.7 Consensus size: 44
27885 CACAAAGCTT
*
27895 TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
27939 TATCTCCCTAGTCAGCAGTGGAATA----G--G--TG-AA-TCA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * * *
27973 TATCTCCTTGGTTAGCAGTGGAATAGGTTAAAGATTGTGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
28017 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTGAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
28061 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTTC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
28105 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
28149 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
28193 TATCTCCCTGGTCAGCAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
28227 TATCTCCCTAGTCGGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
28271 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* *
28315 TATCTCCCTAAG-CAGCAGTGGAGTAGGTTGAA
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAA
28347 AATTACAAAT
Statistics
Matches: 358, Mismatches: 29, Indels: 42
0.83 0.07 0.10
Matches are distributed among these distances:
34 50 0.14
35 4 0.01
36 4 0.01
38 3 0.01
40 4 0.01
42 4 0.01
43 1 0.00
44 287 0.80
45 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.30
Consensus pattern (44 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
Found at i:28210 original size:132 final size:128
Alignment explanation
Indices: 27895--28346 Score: 599
Period size: 122 Copynumber: 3.6 Consensus size: 128
27885 CACAAAGCTT
* * *
27895 TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG
* * * *
27960 AATA----G--GTGAATCATATCTCCTTGGTTAGCAGTGGAATAGGTTAAAGATTGTGAGTCC
66 AATAGGTTGAAGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCC
* *
28017 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTTTGAGTCCTATCTCCCTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG
*
28082 AATAGGTTGAAGATTGTAAGTTCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGT
66 AATAGGTTGAAG--TG-AA-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGT
*
28147 CG
127 CC
28149 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG
* * *
28214 AATA----G--GTGAATCCTATCTCCCTAGTCGGCAGTGGAATAGGTTGAAGATTGTGAATCC
66 AATAGGTTGAAGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCC
* *
28271 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTAAG-CAGCAGT
1 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCT-GGTCAGCAGT
*
28334 GGAGTAGGTTGAA
64 GGAATAGGTTGAA
28347 AATTACAAAT
Statistics
Matches: 291, Mismatches: 21, Indels: 30
0.85 0.06 0.09
Matches are distributed among these distances:
122 167 0.57
123 5 0.02
124 2 0.01
126 3 0.01
128 2 0.01
130 2 0.01
131 2 0.01
132 108 0.37
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.30
Consensus pattern (128 bp):
TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG
AATAGGTTGAAGTGAATCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCC
Found at i:28233 original size:34 final size:34
Alignment explanation
Indices: 28190--28254 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
28180 AGATTGTAAG
*
28190 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAA
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTGAA
*
28224 TCCTATCTCCCTAGTCGGCAGTGGAATAGGT
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGT
28255 TGAAGATTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.22, C:0.25, G:0.26, T:0.28
Consensus pattern (34 bp):
TCCTATCTCCCTAGTCAGCAGTGGAATAGGTGAA
Found at i:28363 original size:44 final size:44
Alignment explanation
Indices: 28221--28766 Score: 200
Period size: 44 Copynumber: 12.4 Consensus size: 44
28211 TGGAATAGGT
* * * * *
28221 GAATCCTATCTCCCT-AGTCGGCAGTGGAATAGGTTGAAGATTGT
1 GAATCTTATCTCCCTAAG-CAGCAGTGGAGTAGGTTGAAAATTGC
* * * * *
28265 GAATCCTATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGT
1 GAATCTTATCTCCCTAAG-CAGCAGTGGAGTAGGTTGAAAATTGC
* *
28309 GAATCCTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTAC
1 GAATCTTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTGC
* * * ** * * **
28353 AAATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGC
1 GAATCTTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTGC
* * * * * * ****
28397 GAATCTTATCTTCCTAAGGTAGTAG-GGAAGCAGATT-TAAGCCAC
1 GAATCTTATCTCCCTAA-GCAGCAGTGG-AGTAGGTTGAAAATTGC
* ** * * * * *
28441 TAGCCTTATCTCCCTGAGCATCAGTGGAATAGGTTGAAGATTGT
1 GAATCTTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTGC
* * *
28485 GAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATT-A
1 GAATCTTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTGC
* * * *** * *
28528 TAGATCTTATCTCCCTAAGAAGTAGTGGAG-AAAATCAAAGATGGC
1 GA-ATCTTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAA-ATTGC
* * * ** *
28573 GAATCTTATCTTCCC-AAGGTAGTAG-GGAAGCATATT--TAA--GC
1 GAATCTTATC-TCCCTAA-GCAGCAGTGG-AGTAGGTTGAAAATTGC
* * * * *
28614 CACTAGCATTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGT
1 GA--ATC-TTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTGC
* * * * * * *
28661 AAACCTTATCTCACTGAGCAGTAGTGGACTAGGTTGAAAATTAC
1 GAATCTTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTGC
* * * * * **
28705 -AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGC
1 GA-ATCTTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTGC
*
28749 GAATCTTATCTTCCTAAG
1 GAATCTTATCTCCCTAAG
28767 GTAGTAGGGA
Statistics
Matches: 378, Mismatches: 101, Indels: 46
0.72 0.19 0.09
Matches are distributed among these distances:
41 3 0.01
43 33 0.09
44 307 0.81
45 30 0.08
46 3 0.01
47 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (44 bp):
GAATCTTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTGC
Found at i:28365 original size:166 final size:166
Alignment explanation
Indices: 28058--28367 Score: 471
Period size: 166 Copynumber: 1.9 Consensus size: 166
28048 AGATTTTGAG
* *
28058 TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTTCTATCTCCCTGGTCAGCAG
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAG
* * * * * **
28123 TGGAATAGGTTGAAGATTGTGAGTCGTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTA
66 TGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAAATTACA
*
28188 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAA
131 AATCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAA
*
28224 TCCTATCTCCCTAGTCGGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCA
1 TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTGGTCAGCA
*
28288 GTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAG-CAGCAGTGGAGTAGGTTGAAAATTA
65 GTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCT-AGTCAGCAGTGGAATAGGTTGAAAATTA
*
28352 CAAATCTTATCTCCCT
129 CAAATCCTATCTCCCT
28368 AAGCAGTAGT
Statistics
Matches: 129, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
166 126 0.98
167 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (166 bp):
TCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAG
TGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTTGAAAATTACA
AATCCTATCTCCCTGGTCAGCAGTGGAATAGGTGAA
Found at i:28379 original size:88 final size:88
Alignment explanation
Indices: 28219--28732 Score: 294
Period size: 88 Copynumber: 5.8 Consensus size: 88
28209 AGTGGAATAG
* * * *** * *
28219 GTGAATCCTATCTCCCT-AGTCGGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCT-GG
1 GTGAATCCTATCTCCCTAAG-CAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAG
*
28282 TCAGCAGTGGAATAGGTTGAAGATT
65 -CAGTAGTGGAATAGGTTGAAGATT
28307 GTGAATCCTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGC
1 GTGAATCCTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGC
** ** * **
28372 AGTAGTGGAGCAAATCGAAGACG
66 AGTAGTGGAATAGGTTGAAGATT
* * * * * * * * *** * ** *
28395 GCGAATCTTATCTTCCTAAGGTAGTAG-GGAAGCAGATT-TAAGCCACTAGCCTTATCTCCCTGA
1 GTGAATCCTATCTCCCTAA-GCAGCAGTGG-AGTAGGTTGAAAATTACAAATCTTATCTCCCTAA
28458 GCA-TCAGTGGAATAGGTTGAAGATT
64 GCAGT-AGTGGAATAGGTTGAAGATT
* * * *
28483 GTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTATAGATCTTATCTCCCTAAGA
1 GTGAATCCTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGC
** ** *
28548 AGTAGTGGAGA-AAATCAAAGATG
66 AGTAGTGGA-ATAGGTTGAAGATT
* * * * * ** * *** * *
28571 GCGAATCTTATCTTCCC-AAGGTAGTAG-GGAAGCATATT-TAAGCCAC-TAGCATTATCTCCCT
1 GTGAATCCTATC-TCCCTAA-GCAGCAGTGG-AGTAGGTTGAAAATTACAAATC-TTATCTCCCT
* * *
28632 GAGCAGCAGTGGAGTAGGTTGAAGATT
62 AAGCAGTAGTGGAATAGGTTGAAGATT
* * * * * *
28659 GT-AAACCTTATCTCACTGAGCAGTAGTGGACTAGGTTGAAAATTACAGATCTTATCTCCCTAAG
1 GTGAATCC-TATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAG
28723 CAGTAGTGGA
65 CAGTAGTGGA
28733 GCAGATCGAA
Statistics
Matches: 303, Mismatches: 104, Indels: 38
0.68 0.23 0.09
Matches are distributed among these distances:
87 30 0.10
88 241 0.80
89 32 0.11
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (88 bp):
GTGAATCCTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGC
AGTAGTGGAATAGGTTGAAGATT
Found at i:28453 original size:254 final size:254
Alignment explanation
Indices: 27895--28474 Score: 627
Period size: 254 Copynumber: 2.3 Consensus size: 254
27885 CACAAAGCTT
* * * * *** *
27895 TATCTCCCTAGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTAGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAACAGATTGAAGACACTAAGTCCTATCTCCCTGGTCAGCAGTGG
* * * *
27960 AATAGGTGAATCATATCTCCTTGGTTAGCAGTGGAATAGGTTAAAGATTGTGAGTCCTATCTCCC
66 AATAGGTGAATCATATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCC
* * * *
28025 TGGTCAGTAGTGGAATAGGTTGAAGATTTTGAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTT
131 TGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTT
* ** * * * ** * ** * *
28090 GAAGATTGTAAGTTCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCG
196 GAAAATTACAAATTCTATCTCCCTAGTCAGCAGTGGAACAAATCGAAGACGGCGAATCG
* * ***
28149 TATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGTAGTGGAACAGATTGAAGACACTAAGTCCTATCTCCCTGGTCAGCAGTGG
* * *
28214 AATAGGTGAATCCTATCTCCCTAGTCGGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCC
66 AATAGGTGAATCATATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCC
*
28279 TGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAG-CAGCAGTGGAGTAGGT
131 TGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCT-AGTCAGCAGTGGAATAGGT
* * *
28343 TGAAAATTACAAA-TCTTATCTCCCTAAG-CAGTAGTGGAGCAAATCGAAGACGGCGAATCT
195 TGAAAATTACAAATTC-TATCTCCCT-AGTCAGCAGTGGAACAAATCGAAGACGGCGAATCG
* * * *
28403 TATCTTCCTAAGGT-AGTAG-GGAAGCAGATTTAAGCCACT-AG-CCTTATCTCCCTGAG-CATC
1 TATCTCCCT--GGTCAGTAGTGGAA-CAGATTGAAGACACTAAGTCC-TATCTCCCTG-GTCAGC
28463 AGTGGAATAGGT
61 AGTGGAATAGGT
28475 TGAAGATTGT
Statistics
Matches: 278, Mismatches: 40, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
253 4 0.01
254 255 0.92
255 16 0.06
256 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (254 bp):
TATCTCCCTGGTCAGTAGTGGAACAGATTGAAGACACTAAGTCCTATCTCCCTGGTCAGCAGTGG
AATAGGTGAATCATATCTCCCTAGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCC
TGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAGTCAGCAGTGGAATAGGTT
GAAAATTACAAATTCTATCTCCCTAGTCAGCAGTGGAACAAATCGAAGACGGCGAATCG
Found at i:28576 original size:176 final size:176
Alignment explanation
Indices: 28271--28830 Score: 917
Period size: 176 Copynumber: 3.2 Consensus size: 176
28261 TTGTGAATCC
*
28271 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAGCAGTG
1 TATCTCCCTGAG-CAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTG
*
28335 GAGTAGGTTGAAAATTACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGCGAA
65 GAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGCGAA
*
28400 TCTTATCTTCCTAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCT
130 TCTTATCTTCCTAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCAT
*
28447 TATCTCCCTGAGCATCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGG
1 TATCTCCCTGAGCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGG
* * * * *
28512 AGTAGGTTGAAAATTATAGATCTTATCTCCCTAAGAAGTAGTGGAGAAAATCAAAGATGGCGAAT
66 AGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGCGAAT
* *
28577 CTTATCTTCCCAAGGTAGTAGGGAAGCATATTTAAGCCACTAGCAT
131 CTTATCTTCCTAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCAT
* * * *
28623 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGT-AAACCTTATCTCACTGAGCAGTAGTG
1 TATCTCCCTGAGCAGCAGTGGAATAGGTTGAAGATTGTGAATCC-TATCTCCCTGAGCAGCAGTG
* *
28687 GACTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAA
65 GAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGCGAA
*
28752 TCTTATCTTCCTAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCTT
130 TCTTATCTTCCTAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCAT
*
28799 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAA
1 TATCTCCCTGAGCAGCAGTGGAATAGGTTGAA
28831 AATTACAGAT
Statistics
Matches: 356, Mismatches: 26, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
175 4 0.01
176 351 0.99
177 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (176 bp):
TATCTCCCTGAGCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGG
AGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGCGAAT
CTTATCTTCCTAAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCAT
Found at i:28802 original size:88 final size:88
Alignment explanation
Indices: 28358--28821 Score: 343
Period size: 88 Copynumber: 5.3 Consensus size: 88
28348 ATTACAAATC
* *
28358 TTATCTCCCTAAGCAGTAGTGGAGCAAATCGAAGACGGCGAATCTTATCTTCCTAAGGTAGTAGG
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCTAAGGTAGTAGG
*
28423 GAAGCAGATTTAAGCCACTAGCC
66 GAAGCAGATTTAAGCCACTAGCT
* ** * * * * * * * * *
28446 TTATCTCCCTGAGCA-TCAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGA-GCAGCAG
1 TTATCTCCCTAAGCAGT-AGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCTAAGGTAGTAG
* * * *** *
28509 TGG-AGTAGGTTGAAAATTA-TAGAT
65 -GGAAGCAGATT-TAAGCCACTAGCT
* * * * *
28533 CTTATCTCCCTAAGAAGTAGTGGAGAAAATCAAAGATGGCGAATCTTATCTTCCCAAGGTAGTAG
1 -TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCTAAGGTAGTAG
* *
28598 GGAAGCATATTTAAGCCACTAGCA
65 GGAAGCAGATTTAAGCCACTAGCT
* * * * * * ** * * *
28622 TTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAAACCTTATC-TCACTGA-GCAGTAG
1 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTC-CTAAGGTAGTAG
* * *** *
28685 TGG-A-CTAGGTTGAAAATTAC-AGAT
65 -GGAAGC-AGATT-TAAGCCACTAGCT
*
28709 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCTAAGGTAGTAG
1 -TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCTAAGGTAGTAG
28774 GGAAGCAGATTTAAGCCACTAGCT
65 GGAAGCAGATTTAAGCCACTAGCT
* *
28798 TTATCTCCCTGAGCAGCAGTGGAG
1 TTATCTCCCTAAGCAGTAGTGGAG
28822 TAGGTTGAAA
Statistics
Matches: 268, Mismatches: 90, Indels: 36
0.68 0.23 0.09
Matches are distributed among these distances:
86 1 0.00
87 29 0.11
88 207 0.77
89 30 0.11
90 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.26
Consensus pattern (88 bp):
TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCCTAAGGTAGTAGG
GAAGCAGATTTAAGCCACTAGCT
Found at i:29546 original size:21 final size:19
Alignment explanation
Indices: 29500--29574 Score: 132
Period size: 19 Copynumber: 3.8 Consensus size: 19
29490 AATCTTCAAG
29500 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
29519 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
29538 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
29559 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
29575 AGATATGATT
Statistics
Matches: 54, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
19 35 0.65
21 19 0.35
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:29596 original size:23 final size:22
Alignment explanation
Indices: 29500--29597 Score: 95
Period size: 19 Copynumber: 4.7 Consensus size: 22
29490 AATCTTCAAG
29500 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
*
29519 GATATGCAATCTTAG-ATATGAT
1 GATATGCAATCTTAGAAGAT-AT
29541 -ATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
29559 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
29581 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
29598 GATTTAATTT
Statistics
Matches: 67, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
18 2 0.03
19 28 0.42
21 15 0.22
22 10 0.15
23 12 0.18
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:29987 original size:27 final size:28
Alignment explanation
Indices: 29957--30038 Score: 112
Period size: 28 Copynumber: 2.9 Consensus size: 28
29947 TTCATTGGGA
29957 TTTTATTATTAAATTAATTATTTTAGTTT
1 TTTTATTATTAAATTAATTATTTTAG-TT
** *
29986 TTTTAATTATTCTATT-TTTATTTTAGTT
1 TTTT-ATTATTAAATTAATTATTTTAGTT
30014 TTTTATTATTAAATTAATTATTTTA
1 TTTTATTATTAAATTAATTATTTTA
30039 ACTATTATGT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
27 9 0.20
28 14 0.31
29 13 0.29
30 9 0.20
ACGTcount: A:0.29, C:0.01, G:0.02, T:0.67
Consensus pattern (28 bp):
TTTTATTATTAAATTAATTATTTTAGTT
Found at i:30004 original size:18 final size:18
Alignment explanation
Indices: 29970--30004 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
29960 TATTATTAAA
*
29970 TTAATTATTTTAGTTTTT
1 TTAATTATTCTAGTTTTT
29988 TTAATTATTCTA-TTTTT
1 TTAATTATTCTAGTTTTT
30005 ATTTTAGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (18 bp):
TTAATTATTCTAGTTTTT
Found at i:30200 original size:35 final size:38
Alignment explanation
Indices: 30139--30209 Score: 103
Period size: 37 Copynumber: 1.9 Consensus size: 38
30129 CATACATATG
30139 TTTTATAATATATACATATACGTACACAT-TTTTTAATT
1 TTTTATAATATATACATATAC-TACACATATTTTTAATT
*
30177 TTTTATAA-ATATATATATA-TACACATATTTTTA
1 TTTTATAATATATACATATACTACACATATTTTTA
30210 TATATTTTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
35 7 0.23
36 6 0.19
37 10 0.32
38 8 0.26
ACGTcount: A:0.39, C:0.08, G:0.01, T:0.51
Consensus pattern (38 bp):
TTTTATAATATATACATATACTACACATATTTTTAATT
Found at i:30339 original size:23 final size:22
Alignment explanation
Indices: 30312--30355 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
30302 ATAATTCACA
*
30312 TACATATATATTTTTCTTATATG
1 TACATATATATATTT-TTATATG
30335 TACATATATATATTTTTATAT
1 TACATATATATATTTTTATAT
30356 TTTATAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.57
Consensus pattern (22 bp):
TACATATATATATTTTTATATG
Found at i:30537 original size:3 final size:3
Alignment explanation
Indices: 30531--30557 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
30521 TTATCTTTTC
30531 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
30558 GTTGTTGTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:30562 original size:3 final size:3
Alignment explanation
Indices: 30556--30599 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
30546 ATTATTATTA
30556 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
30600 CTTGAACATG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:35176 original size:104 final size:105
Alignment explanation
Indices: 34984--35201 Score: 330
Period size: 104 Copynumber: 2.1 Consensus size: 105
34974 ATGGATCTAC
34984 AATTTTACAAGTAAGACCTTTTAGTACCTTGTTTTAGTCTTTTACGCAATCACATTTTATAATTA
1 AATTTT-CAAGTAAGACCTTTTAGTACCTTGTTTTAGTCTTTTACGCAATCACATTTTATAATTA
* * *
35049 TTTTATAAAATTTTTATGCAATAGTCTCTATAGTCTTAATA
65 TATTATAAAATTTTTATGCAATAGTCACTATAGTCTAAATA
* * * *
35090 AATTTTCAA-TAAGACCTTTTATTACTTTGTTTTAGTCTTTTACGCACTCACATTTTATAATTCT
1 AATTTTCAAGTAAGACCTTTTAGTACCTTGTTTTAGTCTTTTACGCAATCACATTTTATAATTAT
* *
35154 ATTATAAATTTTTTATGTAATAGTCACTATAGTCTAAATA
66 ATTATAAAATTTTTATGCAATAGTCACTATAGTCTAAATA
*
35194 GATTTTCA
1 AATTTTCA
35202 GTACTATTTC
Statistics
Matches: 102, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
104 93 0.91
105 3 0.03
106 6 0.06
ACGTcount: A:0.32, C:0.13, G:0.08, T:0.47
Consensus pattern (105 bp):
AATTTTCAAGTAAGACCTTTTAGTACCTTGTTTTAGTCTTTTACGCAATCACATTTTATAATTAT
ATTATAAAATTTTTATGCAATAGTCACTATAGTCTAAATA
Found at i:41784 original size:42 final size:43
Alignment explanation
Indices: 41700--41838 Score: 126
Period size: 42 Copynumber: 3.3 Consensus size: 43
41690 AGCAATCATG
* * *
41700 CTGGCACGTAAGTGTACCATC-AGATGTATCAAAGCAAATATA
1 CTGGCACGTAAGTGCACCATCGAGATATACCAAAGCAAATATA
*
41742 CTGGCACGTAAGTGCACCATCGA-ATATACCGAAG-AAATTATA
1 CTGGCACGTAAGTGCACCATCGAGATATACCAAAGCAAA-TATA
* * * **
41784 CTTGCACATAAGTGCATCATCG-GATA-ACTTGAAGCAAATATA
1 CTGGCACGTAAGTGCACCATCGAGATATAC-CAAAGCAAATATA
* *
41826 CTGGAACATAAGT
1 CTGGCACGTAAGT
41839 TCATCATCAG
Statistics
Matches: 82, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
41 5 0.06
42 73 0.89
43 4 0.05
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (43 bp):
CTGGCACGTAAGTGCACCATCGAGATATACCAAAGCAAATATA
Found at i:41844 original size:42 final size:42
Alignment explanation
Indices: 41731--41846 Score: 137
Period size: 42 Copynumber: 2.8 Consensus size: 42
41721 AGATGTATCA
* *
41731 AAGCAAATATACTGGCACGTAAGTGCACCATCGAATATACCG
1 AAGCAAATATACTGGCACATAAGTGCATCATCGAATATACCG
* * *
41773 AAG-AAATTATACTTGCACATAAGTGCATCATCGGATA-ACTTG
1 AAGCAAA-TATACTGGCACATAAGTGCATCATCGAATATAC-CG
* *
41815 AAGCAAATATACTGGAACATAAGTTCATCATC
1 AAGCAAATATACTGGCACATAAGTGCATCATC
41847 AGCTAAATTA
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
41 5 0.08
42 55 0.87
43 3 0.05
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (42 bp):
AAGCAAATATACTGGCACATAAGTGCATCATCGAATATACCG
Found at i:44372 original size:27 final size:27
Alignment explanation
Indices: 44329--44401 Score: 114
Period size: 27 Copynumber: 2.8 Consensus size: 27
44319 TTTTATCCCT
44329 ATTTTACCCC-AGT-AAATTTTTGATG
1 ATTTTACCCCTAGTAAAATTTTTGATG
*
44354 ATTTTACCCCTAATAAAATTTTTGATG
1 ATTTTACCCCTAGTAAAATTTTTGATG
*
44381 ATTTTACCCCTGGTAAAATTT
1 ATTTTACCCCTAGTAAAATTT
44402 CGAAAAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
25 10 0.23
26 2 0.05
27 31 0.72
ACGTcount: A:0.30, C:0.16, G:0.10, T:0.44
Consensus pattern (27 bp):
ATTTTACCCCTAGTAAAATTTTTGATG
Found at i:45671 original size:18 final size:17
Alignment explanation
Indices: 45629--45672 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
45619 TGTTGTTCGT
45629 TTTCAAAACATTATTCA
1 TTTCAAAACATTATTCA
* *
45646 TTTACAAATCGTTATTCAA
1 TTT-CAAAACATTATTC-A
45665 TTTCAAAA
1 TTTCAAAA
45673 TGTTTTCTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
17 3 0.14
18 15 0.68
19 4 0.18
ACGTcount: A:0.41, C:0.16, G:0.02, T:0.41
Consensus pattern (17 bp):
TTTCAAAACATTATTCA
Found at i:48566 original size:30 final size:30
Alignment explanation
Indices: 48527--48588 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
48517 ACTTATTTTA
48527 TTGTAAATTTTGTTATTATTTTAAAGACAT
1 TTGTAAATTTTGTTATTATTTTAAAGACAT
* * *
48557 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTAAATTTTGTTATTATTTTAAAGACAT
48587 TT
1 TT
48589 TTTTATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.56
Consensus pattern (30 bp):
TTGTAAATTTTGTTATTATTTTAAAGACAT
Found at i:48737 original size:12 final size:12
Alignment explanation
Indices: 48714--48747 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
48704 TATATATTTT
48714 AAAATT-ATATA
1 AAAATTAATATA
48725 AAAATTAATATA
1 AAAATTAATATA
48737 AAAATTAATAT
1 AAAATTAATAT
48748 GGGCGGGCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 6 0.27
12 16 0.73
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:62116 original size:17 final size:16
Alignment explanation
Indices: 62063--62141 Score: 80
Period size: 15 Copynumber: 5.2 Consensus size: 16
62053 TTGGTTCTTG
62063 ATAT-ATTTAAA-TTT
1 ATATAATTTAAATTTT
62077 A-A-AATTT-AATTTT
1 ATATAATTTAAATTTT
* *
62090 TTATATTTTAAATTTT
1 ATATAATTTAAATTTT
*
62106 AGTATAGTTTAAATTTT
1 A-TATAATTTAAATTTT
62123 -TATAATTTAAATTTT
1 ATATAATTTAAATTTT
62138 ATAT
1 ATAT
62142 TTTTATAATG
Statistics
Matches: 53, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
12 2 0.04
13 8 0.15
14 2 0.04
15 18 0.34
16 9 0.17
17 14 0.26
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (16 bp):
ATATAATTTAAATTTT
Found at i:65348 original size:18 final size:19
Alignment explanation
Indices: 65325--65363 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
65315 TCAATTTGAC
*
65325 AAAATA-GAAAATTTTAGA
1 AAAATATGAAAATTTGAGA
65343 AAAATATGAAAATTTGAGA
1 AAAATATGAAAATTTGAGA
65362 AA
1 AA
65364 TAGGGGTCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.62, C:0.00, G:0.13, T:0.26
Consensus pattern (19 bp):
AAAATATGAAAATTTGAGA
Found at i:66667 original size:18 final size:17
Alignment explanation
Indices: 66644--66697 Score: 72
Period size: 18 Copynumber: 3.0 Consensus size: 17
66634 AAATTGTGTC
66644 ATTCATTTCCAAAACATT
1 ATTCATTT-CAAAACATT
*
66662 ATTCATTTACAAATCATT
1 ATTCATTT-CAAAACATT
66680 ATTCAATTTCAAAACATT
1 ATTC-ATTTCAAAACATT
66698 TTTTTCATTG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
18 28 0.88
19 4 0.12
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (17 bp):
ATTCATTTCAAAACATT
Found at i:74967 original size:12 final size:12
Alignment explanation
Indices: 74950--74977 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
74940 AAGTATTTTA
74950 GAGAGATATTAG
1 GAGAGATATTAG
74962 GAGAGATATTAG
1 GAGAGATATTAG
74974 GAGA
1 GAGA
74978 TTTAAGAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.36, T:0.21
Consensus pattern (12 bp):
GAGAGATATTAG
Found at i:75776 original size:46 final size:46
Alignment explanation
Indices: 75719--75810 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
75709 AAGGGAAAAG
75719 TTAAAAGATAGAAAATATAAGTTTTCTTTTCATAGATATGCCTAGT
1 TTAAAAGATAGAAAATATAAGTTTTCTTTTCATAGATATGCCTAGT
*
75765 TTAATAGATAGAAAATATAAGTTTTCTTTTCATAGATATGCCTAGT
1 TTAAAAGATAGAAAATATAAGTTTTCTTTTCATAGATATGCCTAGT
75811 GGGAAAGTTG
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (46 bp):
TTAAAAGATAGAAAATATAAGTTTTCTTTTCATAGATATGCCTAGT
Found at i:76035 original size:20 final size:20
Alignment explanation
Indices: 76003--76053 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
75993 TTAATTTTTC
*
76003 AAAA-AAATTTTATGATATAT
1 AAAATAAATTATAT-ATATAT
*
76023 AAAAATAAATTATATTTATAT
1 -AAAATAAATTATATATATAT
76044 AAAATAAATT
1 AAAATAAATT
76054 TCGTATGTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 10 0.37
21 9 0.33
22 8 0.30
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (20 bp):
AAAATAAATTATATATATAT
Found at i:76712 original size:15 final size:15
Alignment explanation
Indices: 76692--76721 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
76682 TAAGTCTCAA
76692 AATTCAAAATGAAAG
1 AATTCAAAATGAAAG
*
76707 AATTCAAATTGAAAG
1 AATTCAAAATGAAAG
76722 GTAACTAATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.13, T:0.23
Consensus pattern (15 bp):
AATTCAAAATGAAAG
Found at i:89679 original size:15 final size:15
Alignment explanation
Indices: 89659--89694 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
89649 CATAAATTAT
89659 ATTATTTTCATGTTA
1 ATTATTTTCATGTTA
89674 ATTATTTTCATGTTA
1 ATTATTTTCATGTTA
89689 ATTATT
1 ATTATT
89695 ATTATGCAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.61
Consensus pattern (15 bp):
ATTATTTTCATGTTA
Found at i:93876 original size:13 final size:13
Alignment explanation
Indices: 93860--93894 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
93850 GTTTCCATGT
* *
93860 TATGTTTTTAAGC
1 TATGTTTTAAAGA
93873 TATGTTTTAAAGA
1 TATGTTTTAAAGA
93886 TATGTTTTA
1 TATGTTTTA
93895 TGCGTGCTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.29, C:0.03, G:0.14, T:0.54
Consensus pattern (13 bp):
TATGTTTTAAAGA
Found at i:104305 original size:19 final size:19
Alignment explanation
Indices: 104283--104320 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
104273 TCAATCATCC
104283 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
104302 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
104321 ACTCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:106980 original size:27 final size:27
Alignment explanation
Indices: 106911--106964 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
106901 TCCAGACATT
106911 GATATTTAATAAAAATCTCGTAAAAAC
1 GATATTTAATAAAAATCTCGTAAAAAC
106938 GATATTTAATAAAAATCTCGTAAAAAC
1 GATATTTAATAAAAATCTCGTAAAAAC
106965 AGAGTATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.52, C:0.11, G:0.07, T:0.30
Consensus pattern (27 bp):
GATATTTAATAAAAATCTCGTAAAAAC
Found at i:117959 original size:28 final size:28
Alignment explanation
Indices: 117927--117980 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
117917 AAAATTTTAG
*
117927 GTGTTATTTGATAAACTGAGAAATTAAA
1 GTGTTATTTGATAAACTGAAAAATTAAA
* *
117955 GTGTTGTTTGATCAACTGAAAAATTA
1 GTGTTATTTGATAAACTGAAAAATTA
117981 CATGCTAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.39, C:0.06, G:0.19, T:0.37
Consensus pattern (28 bp):
GTGTTATTTGATAAACTGAAAAATTAAA
Found at i:120981 original size:101 final size:100
Alignment explanation
Indices: 120781--121077 Score: 453
Period size: 100 Copynumber: 3.0 Consensus size: 100
120771 TAATACTGAT
* * * * *
120781 ATACGAAAAAGA-AAAAAAAA--TTTGGGTGTTGGCCTGTCAATGGCCGGCACCCAGTGA-ACAG
1 ATACGAAAAAAATAAAAAAAATTTTTGGGTGCTGGCCTATCAATGGCTGGCACCCAGT-ACACAA
*
120842 TAAA-ATTTTTTTTCGTGTCAGAATAAGATATAAAA
65 TAAATTTTTTTTTTCGTGTCAGAATAAGATATAAAA
120877 ATACGAAAAAAATAAAAAAAATTTTTTGGGTGCTGGCCTATCAATGGCTGGCACCCAGTACACAA
1 ATACGAAAAAAATAAAAAAAA-TTTTTGGGTGCTGGCCTATCAATGGCTGGCACCCAGTACACAA
120942 TAAATTTTTTTTTTCGTGTCAGAATAAGATATAAAA
65 TAAATTTTTTTTTTCGTGTCAGAATAAGATATAAAA
120978 ATACGAAAAAAATAAAAAAAATTTTTGGGTGCTGGCCTATCAATGGCTGGCACCCAGTACACAAT
1 ATACGAAAAAAATAAAAAAAATTTTTGGGTGCTGGCCTATCAATGGCTGGCACCCAGTACACAAT
* * *
121043 AAATTTTTTTTGT-GTGTTAGAATCAGATATAAAA
66 AAATTTTTTTTTTCGTGTCAGAATAAGATATAAAA
121077 A
1 A
121078 NNNNNNNNNN
Statistics
Matches: 186, Mismatches: 9, Indels: 9
0.91 0.04 0.04
Matches are distributed among these distances:
96 11 0.06
97 8 0.04
99 21 0.11
100 95 0.51
101 51 0.27
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (100 bp):
ATACGAAAAAAATAAAAAAAATTTTTGGGTGCTGGCCTATCAATGGCTGGCACCCAGTACACAAT
AAATTTTTTTTTTCGTGTCAGAATAAGATATAAAA
Found at i:122028 original size:2 final size:2
Alignment explanation
Indices: 122021--122048 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
122011 GATACGTAAG
122021 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
122049 TCAATTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:123011 original size:20 final size:20
Alignment explanation
Indices: 122958--123012 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 20
122948 TAATAGAGTA
* * *
122958 GAGCAGAGCAGAGCATAACT
1 GAGCAGAGCAGAACAAAACG
* * *
122978 GAACTGAACAGAACAAAACG
1 GAGCAGAGCAGAACAAAACG
122998 GAGCAGAGCAGAACA
1 GAGCAGAGCAGAACA
123013 GAACATGTAT
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.47, C:0.20, G:0.27, T:0.05
Consensus pattern (20 bp):
GAGCAGAGCAGAACAAAACG
Found at i:124075 original size:725 final size:716
Alignment explanation
Indices: 122458--124360 Score: 2537
Period size: 725 Copynumber: 2.6 Consensus size: 716
122448 GGATGCTTTG
* * * ** *
122458 TGTAACGCCCCAAACCCGACCTGGAAGTTTAAGCAGAAACTTAAACGAGTTACACCAA-GACAAT
1 TGTAACACCCCAAACCCGACCTGAAAGTTTAAGC-CAAACTTGGACGAGTTACA-CAATG-CATT
* * * ***
122522 AAAAATTGATTT-TTTTTGGGATTTTAATTTTGAAAAATAGAAATTTGGTTTTTTCGATTTAGGT
63 AAAAACTAATTTCTTTTTGGGATTTTAATTTTGAAACA-AGAAATTCATTTTTTTCGATTTAGGT
* * * *
122586 GA-TTCGTAGTTTCATGTTAGAAATTGACTGATACGAACGAGATTACCAAAAGGAAAGCAAGGCA
127 GATTTTGTAGTTTCGTGTTAGAAATTGATTGATACGGACGAGATTACCAAAA-GAAAGCAAGGCA
* *
122650 AATCCAAGACAATTTACAAACCCAAAAGATCAATTTGCAGTTATTTCAGGGTAAAACAATCCGAG
191 AATCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAATCCGAG
* * *
122715 CTCTCGTACGCTGTCCGATCCTAAATCAGATGTTTTCCTCAACAGATGAAGGTAAGAAAAAGGGT
256 CTCTCGTACGCTATCCGATCCTAAATCAGATGTTTTCCTGAACAGATGAAGGTAAGAAAAA-GTT
* *
122780 GAGTTACAAAGCACCGCGTATAACAAGGCTCAAATACAAATAAGTAGAGCATACTATATAACTCG
320 GAGTTACCAAGCACCGCGTATAACAAGGCTCAAATACAAATAAGAAGAGCATACTATATAACTCG
* * * *
122845 TAGTAACGCAAATAAATTATGAGCAATTGTATAACTAGTACGGAAAACTCTAGAGTATCATAGAG
385 TAGTAACACAAATAACTTATGAGCAGTTGTATAACTAGTACGGAAAACTCTAGAGTATCACAGAG
* * * * * *
122910 ATTTAATCAAATGTAGTACAACAGAACAAAGAAAAACATAATAGAGTAGAGCAGAGCAGAGCATA
450 ATTTAATCAAAGGTAGTACAACAGAACAAAGAAAAACATAATAGAGCAGAACAAAACAAAGCATA
* * * * * * *
122975 ACTGAACTGAACAGAACAAAACGGAGCAGAGCAGAACAGAACATGTATGTTTATGTAGATGTAGT
515 ACAGAACAGAACAGAACAAAACAGAACAAAGCAGAACAGAACATGTATATTTATGCAGATGTAGT
* * * *
123040 ATTTTTCAAACAGATCAGAATGTAGATTTATCAGAAACAGTCTTCTCAGACTCCGTTACACACAA
580 ATTTTTCAAACAGAACAAAATGAAGATTTATCAGAAACAGCCTTCTCAGACTCCGTTACACACAA
* * * *
123105 AAATAGAGTTTTTCCCCGAACTAATCCATCCAAAACTCACCAAGAAAGTCATCTCGAGTTGATAC
645 AAATAGAGTTCTCCCCCGAACTAATCCATCCAAAACACACCAAGAAAGTCATCCCGAGTTGATAC
123170 CACTAAA
710 CACTAAA
*** *
123177 TGTAACACCCCAAATTTGACCTGAAAGTTTAAGCCAAACTTGGACGAGATACACTAATGCATTAA
1 TGTAACACCCCAAACCCGACCTGAAAGTTTAAGCCAAACTTGGACGAGTTACAC-AATGCATTAA
* * *
123242 AAACTTATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTCATTTTTGTT-GATTTAGGTG
65 AAACTAATTTCTTTTTGGGATTTTAATTTTG-AAACAAGAAATTCATTTTT-TTCGATTTAGGTG
* *
123306 ATTTTGTAATTTCGTGTTAGAAATTGATTGATACGGACGAGATTATCAAAAGAAAAGCAAGGCAA
128 ATTTTGTAGTTTCGTGTTAGAAATTGATTGATACGGACGAGATTACCAAAAG-AAAGCAAGGCAA
* * * *
123371 ATACAAGACAATTTACAAACCCAAAAGATCAACTCGTAGTTATTAT-AGTGTAAAACAATCCAAG
192 ATCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATT-TCAGTGTAAAACAATCCGAG
* * *
123435 CTCCCGTACGAC-ATCTGATCCTAAATCAGATGTTTTCCTGAACAGATAAAGGTAAGACAAAAGT
256 CTCTCGTACG-CTATCCGATCCTAAATCAGATGTTTTCCTGAACAGATGAAGGTAAGA-AAAAGT
* * *
123499 TGAGTTACCAAGCACCGTGTATGACCAGGCTCAAATACAAATAAGAAGAGCATACTATATAACTC
319 TGAGTTACCAAGCACCGCGTATAACAAGGCTCAAATACAAATAAGAAGAGCATACTATATAACTC
* *
123564 GAAGTAACACAAATAACTTATGAGCAGTTGTATAACTAGTACGGAAAACTCTAAAGTATCACAGA
384 GTAGTAACACAAATAACTTATGAGCAGTTGTATAACTAGTACGGAAAACTCTAGAGTATCACAGA
* *
123629 GATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACATAATAGAGCAGAACAAAACTAAATGG
449 GATTTAATCAAAGGTAGTACAACAGAACAAAGAAAAACATAATAGAGCAGAACAAAAC-AAA--G
* * * *
123694 TATAGAGCAGAGCAGAACAGAACAAAACAGAACAAAGCAGAGCAGAACATGTATATTTCTGCAGA
511 CATA-A-CAGAACAGAACAGAACAAAACAGAACAAAGCAGAACAGAACATGTATATTTATGCAGA
* * *
123759 TGTAGTTTTTTTCAAACAGAACAAAATGAAGATTTATTAGAAGCAGCCCTT-TCA-AGCTCCGTT
574 TGTAGTATTTTTCAAACAGAACAAAATGAAGATTTATCAGAAACAG-CCTTCTCAGA-CTCCGTT
* *
123822 ACGCACAAAAATAGAGTTCTCCCCCGAACTCATCCATCCAAAACACACCAAGAAAGTCATCCC-A
637 ACACACAAAAATAGAGTTCTCCCCCGAACTAATCCATCCAAAACACACCAAGAAAGTCATCCCGA
123886 GGTTGATACCACTAAA
702 -GTTGATACCACTAAA
* *
123902 TGTAACACCCTAAACCCGACCTGAAAGTTTAAGCCAAACTTGGACGAGTTACATCAATGCATTGA
1 TGTAACACCCCAAACCCGACCTGAAAGTTTAAGCCAAACTTGGACGAGTTACA-CAATGCATTAA
123967 AAACTAATTTCTTTTTGGGATTTTAATTTTGAAAGCAAGAAATTCATTTTTTTCGATTTAGGTGA
65 AAACTAATTTCTTTTTGGGATTTTAATTTTGAAA-CAAGAAATTCATTTTTTTCGATTTAGGTGA
* * *
124032 TTTTTTAGTTTTGTGTTAGAAATTGATTGATACGGATGAGATTACCAAAACGAAAGCAAGGCAAA
129 TTTTGTAGTTTCGTGTTAGAAATTGATTGATACGGACGAGATTACCAAAA-GAAAGCAAGGCAAA
* * * *
124097 TCCAAGACAATGTAAAAACCCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAATCTGAGGT
193 TCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAATCCGAGCT
* * * * *
124162 CTCGTACGCTATCCGATTCTGAGTCAAATATTTTCCTGAACAGATGAAGGTAAGAAAAAAGTGTG
258 CTCGTACGCTATCCGATCCTAAATCAGATGTTTTCCTGAACAGATGAAGGTAAG-AAAAAGT-TG
* * * * * * **
124227 AGTTACCAAGCACCACGTATAACTAGGCTTAAATAGAAATATGCAGATTATACTATATAACTCGT
321 AGTTACCAAGCACCGCGTATAACAAGGCTCAAATACAAATAAGAAGAGCATACTATATAACTCGT
* * * * * *
124292 AGTAACACAAATAACTTAAGAGCAGTTGTATAACCAGTACAGACAACTCTAGAGCATCACAGATA
386 AGTAACACAAATAACTTATGAGCAGTTGTATAACTAGTACGGAAAACTCTAGAGTATCACAGAGA
124357 TTTA
451 TTTA
124361 GGACTAGTTT
Statistics
Matches: 1031, Mismatches: 127, Indels: 45
0.86 0.11 0.04
Matches are distributed among these distances:
717 1 0.00
718 30 0.03
719 72 0.07
720 337 0.33
721 8 0.01
723 4 0.00
724 10 0.01
725 445 0.43
726 124 0.12
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (716 bp):
TGTAACACCCCAAACCCGACCTGAAAGTTTAAGCCAAACTTGGACGAGTTACACAATGCATTAAA
AACTAATTTCTTTTTGGGATTTTAATTTTGAAACAAGAAATTCATTTTTTTCGATTTAGGTGATT
TTGTAGTTTCGTGTTAGAAATTGATTGATACGGACGAGATTACCAAAAGAAAGCAAGGCAAATCC
AAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAATCCGAGCTCTC
GTACGCTATCCGATCCTAAATCAGATGTTTTCCTGAACAGATGAAGGTAAGAAAAAGTTGAGTTA
CCAAGCACCGCGTATAACAAGGCTCAAATACAAATAAGAAGAGCATACTATATAACTCGTAGTAA
CACAAATAACTTATGAGCAGTTGTATAACTAGTACGGAAAACTCTAGAGTATCACAGAGATTTAA
TCAAAGGTAGTACAACAGAACAAAGAAAAACATAATAGAGCAGAACAAAACAAAGCATAACAGAA
CAGAACAGAACAAAACAGAACAAAGCAGAACAGAACATGTATATTTATGCAGATGTAGTATTTTT
CAAACAGAACAAAATGAAGATTTATCAGAAACAGCCTTCTCAGACTCCGTTACACACAAAAATAG
AGTTCTCCCCCGAACTAATCCATCCAAAACACACCAAGAAAGTCATCCCGAGTTGATACCACTAA
A
Found at i:124394 original size:13 final size:13
Alignment explanation
Indices: 124376--124441 Score: 96
Period size: 13 Copynumber: 5.1 Consensus size: 13
124366 AGTTTGGCAA
124376 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
124389 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
124402 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
*
124415 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
124428 TGCTTTTAAAAAG
1 TGCTTTTGAAAAG
124441 T
1 T
124442 TTGGTTTAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 46 1.00
ACGTcount: A:0.30, C:0.08, G:0.26, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:125139 original size:20 final size:20
Alignment explanation
Indices: 125084--125139 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
125074 ACCGAATGGT
*
125084 ACAGAGCAGAGCAGAACTAA
1 ACAGAGCAGAGCAGAACAAA
* * **
125104 ACATAACAGAATAGAACAAA
1 ACAGAGCAGAGCAGAACAAA
*
125124 ACGGAGCAGAGCAGAA
1 ACAGAGCAGAGCAGAA
125140 TAGAACATGT
Statistics
Matches: 26, Mismatches: 10, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.54, C:0.18, G:0.23, T:0.05
Consensus pattern (20 bp):
ACAGAGCAGAGCAGAACAAA
Found at i:126320 original size:612 final size:615
Alignment explanation
Indices: 125103--126322 Score: 1728
Period size: 615 Copynumber: 2.0 Consensus size: 615
125093 AGCAGAACTA
* * * *
125103 AACATAACAGAATAGAACAAAACGGAGCAGAGCAGAATAGAACATGTATGTTTATGCAGATGCAA
1 AACAGAACAGAACAGAACAAAACGGAGCAGAGCAGAACAAAACATGTATGTTTATGCAGATGCAA
* * * * * *
125168 CATTTTTCAAACAGATTAGAATGTAGATTTATCAGAAACAGTCTTCCCGAACTTAGTTCCACACA
66 CATTTTTCAAACAGATCAGAACGTAGATTTATCAAAAACAGTCTTCCAGAACTCAGTTACACACA
* * * **
125233 AAAATAGAGTTCTCCCTCGAACTCATCCATCCGAAACACACCAAGAAAGTCATTCCGGGTTGATA
131 AAAATAGAGTTCTCCCTCGAACTCATCCATCCAAAACACACCAAGAAAGGCATCCCAAGTTGATA
*
125298 CCACTACATGTAACACCCCAAACACAACCTGAAAGTTTAACCCGAACTTGGACGAGTTACACAAA
196 CCACTACATGTAACACCCCAAACACAACCTGAAAGTTTAACACGAACTTGGACGAGTTACACAAA
* * * *
125363 TGCATTGAAAATTGATTTCTTTTTGGGATTTTAAATTTGTGAACCAGAAATTCTTTTTTGTCTAT
261 TGCAATGAAAACTGATTTCTTTTCGGGATTTTAAATTTGTGAACCAGAAATTCTTTTTTGTCGAT
* * *
125428 TTAGGTGATTTTCTAGTTTCATGTGAAAAATTGATCGATACGGACGAGATTATCAAATGGAAAGC
326 TTAGGTGATTTTCTAGTTTCATGTGAAAAATTGATCGATACGAACGAGATTACCAAAAGGAAAGC
* * *
125493 AAGGCAAATCCAAGACAATTTAACAACCCAAAATATCAATTTGCAGTTATTACAATGTAAAAGAA
391 AAGGCAAATCCAAGACAATTTAACAACCCAAAAGATCAATTCGCAGTTATTACAATGTAAAACAA
* * * *
125558 TCCGAGCTCTCGTACGCCGTCTGATCTTAAATCAGATGTTTTCCTGAACAGATGAAGGTAAGACA
456 TCCGAGCACTCGTACGCCGTCTGATCTTAAATCAGATATTTTCCTAAACAGATGAAGGTAAGAAA
* * *
125623 AAGGGTGAGTTATCAAGCATTGCGTATAACCAGGCTCAAATACAAATAAGTAGAGCATACTATAT
521 AAGGGTGAGTTATCAAGCACTGCGTATAACCAGACTCAAATAAAAATAAGTAGAGCATACTATAT
125688 AACTCGTAGTAACGAAGATAAGTAGAACAG
586 AACTCGTAGTAACGAAGATAAGTAGAACAG
* * *
125718 AACAGAACAGAACAGAATAAAACGGTGCAGAGCAGAACAAAACATGTATGTTTATGCAGATGCAG
1 AACAGAACAGAACAGAACAAAACGGAGCAGAGCAGAACAAAACATGTATGTTTATGCAGATGCAA
* * * * *
125783 TATTTTTCAAACAGATCGGAACGTATATTTATCAAAAATAGTCTTCCAGAACTCCGTTACACACA
66 CATTTTTCAAACAGATCAGAACGTAGATTTATCAAAAACAGTCTTCCAGAACTCAGTTACACACA
* *
125848 AAAATAGAGTTCTCTCTCGAACTCATCCATCCAAAACACATCAAGAAAGGCATCCCAAGTTGATA
131 AAAATAGAGTTCTCCCTCGAACTCATCCATCCAAAACACACCAAGAAAGGCATCCCAAGTTGATA
* * * * *
125913 CCACTGA-ATGTAACACCCCAAACCCAACCTGGAAGTTTAAGACGAGCTTGGACGAGTTACACCA
196 CCACT-ACATGTAACACCCCAAACACAACCTGAAAGTTTAACACGAACTTGGACGAGTTACACAA
*
125977 A-GACAATGAAAACTGATTTCTTTTCGGGA-TTT-AATTT-TGAAATCTAGAAATT-TTTTTT-T
260 ATG-CAATGAAAACTGATTTCTTTTCGGGATTTTAAATTTGTG-AA-CCAGAAATTCTTTTTTGT
* * *
126036 CGATTTAGGTGA-TTTCGTAGTTTCGTGTTAGAAATTGA-CTGATACGAACGAGATTACCAAAAG
322 CGATTTAGGTGATTTTC-TAGTTTCATGTGAAAAATTGATC-GATACGAACGAGATTACCAAAAG
* * *
126099 GAAAGCAAGGCAAATCCAAGACAATTT-ACAAACCCAAAAGATCAATTCGTAGTTATTTCAGTGT
385 GAAAGCAAGGCAAATCCAAGACAATTTAAC-AACCCAAAAGATCAATTCGCAGTTATTACAATGT
* * * *
126163 AAAACAATCTGATCACTCGTACGCTGTCTGAT-TCTAAATTAGATATTTTCCTAAACAGATGAAG
449 AAAACAATCCGAGCACTCGTACGCCGTCTGATCT-TAAATCAGATATTTTCCTAAACAGATGAAG
126227 GTAAGAAAAAGGGTGAGTTA-CACAGCACTGCGTATAA-CACGACTCAAATAAAAATAAGTAGAG
513 GTAAGAAAAAGGGTGAGTTATCA-AGCACTGCGTATAACCA-GACTCAAATAAAAATAAGTAGAG
126290 CATACTATATAACTCGTAGTAACGAAGATAAGT
576 CATACTATATAACTCGTAGTAACGAAGATAAGT
126323 TAAGAGCAGT
Statistics
Matches: 536, Mismatches: 59, Indels: 23
0.87 0.10 0.04
Matches are distributed among these distances:
611 12 0.02
612 248 0.46
613 13 0.02
614 12 0.02
615 250 0.47
616 1 0.00
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.26
Consensus pattern (615 bp):
AACAGAACAGAACAGAACAAAACGGAGCAGAGCAGAACAAAACATGTATGTTTATGCAGATGCAA
CATTTTTCAAACAGATCAGAACGTAGATTTATCAAAAACAGTCTTCCAGAACTCAGTTACACACA
AAAATAGAGTTCTCCCTCGAACTCATCCATCCAAAACACACCAAGAAAGGCATCCCAAGTTGATA
CCACTACATGTAACACCCCAAACACAACCTGAAAGTTTAACACGAACTTGGACGAGTTACACAAA
TGCAATGAAAACTGATTTCTTTTCGGGATTTTAAATTTGTGAACCAGAAATTCTTTTTTGTCGAT
TTAGGTGATTTTCTAGTTTCATGTGAAAAATTGATCGATACGAACGAGATTACCAAAAGGAAAGC
AAGGCAAATCCAAGACAATTTAACAACCCAAAAGATCAATTCGCAGTTATTACAATGTAAAACAA
TCCGAGCACTCGTACGCCGTCTGATCTTAAATCAGATATTTTCCTAAACAGATGAAGGTAAGAAA
AAGGGTGAGTTATCAAGCACTGCGTATAACCAGACTCAAATAAAAATAAGTAGAGCATACTATAT
AACTCGTAGTAACGAAGATAAGTAGAACAG
Found at i:127578 original size:735 final size:733
Alignment explanation
Indices: 125722--133994 Score: 6760
Period size: 735 Copynumber: 11.2 Consensus size: 733
125712 GAACAGAACA
* * *
125722 GAACAGAACAGAATAAAACGGTGCAGAGCAGAACAA-AACATGTATGTTTATGCAGATGCAGTAT
1 GAACAGAACAAAACAAAACGGAGCAGAGCAGAA-AATAACATGTATGTTTATGCAGATGCAGTAT
* * * * *
125786 TTTTCAAACAGATCGGAACGTATATTTATCAAAAATAGTCTT-CCAGAACTCCGTTACACACAAA
65 TTTTCAAACAGATCAGAACGCAGATTTATCAGAAACAGTCTTCCCA-AACTCCGTTACACACAAA
* * **
125850 AATAGAGTTCTCTCTCGAACTCATCCATCCAAAACACATC-AAGAAAGGCATCCCAAGTTGATAC
129 AATAGAGTTCTC-CCCGAACTCATCCATCCAAAACACA-CAAAGAAAGTCATCCCGGGTTGATAC
* * * * *
125914 CACTGAATGTAACACCCCAAACCCAACCTGGAAGTTTAAGACGAGCTTGGACGAGTTACACCAA-
192 CACTAAATGTAACACCCCAAACCCGACCTAGAAGTTTAAGCCGAACTTGGACGAGTTACACCAAT
* * *
125978 GACAATGAAAACTGATTTCTTTTCGGGA-TTTAATTTTGAAATCTAGAAATTT-TTTTTTCGATT
257 G-CATTGAAAACTGATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTTATTTTTTCGATT
* * * * * * *
126041 TAGGTGATTTCGTAGTTTCGTGTTAGAAATTGACTGATACGAACGAGATTACCAAAAGGAAAGCA
321 TAGATGATTTTGTAGTTTCGTGTTAGAAATTTATTTATACGGACGAGATTATCAAAAGGAAAGCA
*
126106 AGGCAAATCCAAGACAATTTACAAACCCAAAAGATCAATTCGTAGTTATTTCAGTGTAAAACAAT
386 AGGCAAATCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAAT
* * * * ** * * * * *
126171 CTGATCACTCGTACGCTGTCTGATTCTAAATTAGATATTTTCCTAAACAGATGAAGGTAAGAAAA
451 CCGAGCTCTCGTACACCATCCGATCCTAAATCAGATATTTTCCTGAACAGATGAAGGTAAGACAA
* * *
126236 AGGGTGAGTTA-CACAGCACTGCGTATAA-CACGACTCAAATAAAAATAAGTAGAGCATACTATA
516 AGGGTGAGTTACCA-AGCACCGCGTATAACCA-GACTCAAATACAAATAAGCAGAGCATACTATA
* * * * * * *
126299 TAACTCGTAGTAACGAAGATAAGTTAAGAGCAGTTGTATAACTACTACGGGCGACTCTAAAGTAT
579 TAACTCGTAGTAACGAAAATAACTTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGTAT
* *
126364 CACAGAGATTTAATCAAAGGTAGTACAATAAAACAAAG-AAAATCATAATAGAGCAGAACAAAAT
644 CACAGAGATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAA-CATAATAGAGCAGAACAAAGT
* * * * * *
126428 CGAATCGTACAGAGTAGAGCAGAACT
708 TGAATGGTACATAGCAAAGCATAACT
* * * * * * *
126454 GAACAAAACAGAACAAAATGGAGCAGAGTAGCACATAACATGTATGTTTATACAGAT-CTAGTAT
1 GAACAGAACAAAACAAAACGGAGCAGAGCAGAAAATAACATGTATGTTTATGCAGATGC-AGTAT
* *** *
126518 TTTTTAAACAGATCAGAAAATAGTTTTATCAG-AA-A-------C--A-------A-ACACAAAA
65 TTTTCAAACAGATCAGAACGCAGATTTATCAGAAACAGTCTTCCCAAACTCCGTTACACACAAAA
*
126564 ATAGAGTTCTCCCCAGATCTCATCCATCCAAAACACACAAAGAAAGTCATCCCAGGG-TGATACC
130 ATAGAGTTCTCCCC-GAACTCATCCATCCAAAACACACAAAGAAAGTCATCCC-GGGTTGATACC
* *
126628 ACTAAATGTAACACCCCAAACTCGACCTAGAAGTTTAAGCCGAACTTGGATGAGTTACACCAATG
193 ACTAAATGTAACACCCCAAACCCGACCTAGAAGTTTAAGCCGAACTTGGACGAGTTACACCAATG
* ** *
126693 CATT-TAAACAAATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTCATTTTTGTCGATTT
258 CATTGAAAACTGATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTTATTTTT-TCGATTT
* ** *
126757 AGATGATTTTGTAGTTTCGTGTTATAAATTTATTTATATAGACGAGATTATGAAAAGGAAAGCAA
322 AGATGATTTTGTAGTTTCGTGTTAGAAATTTATTTATACGGACGAGATTATCAAAAGGAAAGCAA
* * * *
126822 GGAAAATCCAAGACAATTTACAAATCCAAAAGATTAATTCGCAGTTATTTCAGAGTAAAACAATC
387 GGCAAATCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAATC
* * * *
126887 CGAGCTGTCGTACACCATCTGATCCTAAATCAGATGTTTTCCTGAATAGATGAAGGTAAGACAAA
452 CGAGCTCTCGTACACCATCCGATCCTAAATCAGATATTTTCCTGAACAGATGAAGGTAAGACAAA
* * * *
126952 GGGTGAGTTACCAAGCACCGTGTATAACCATG-CTCAAATATAAATAAGCCGTGCATACTATATA
517 GGGTGAGTTACCAAGCACCGCGTATAACCA-GACTCAAATACAAATAAGCAGAGCATACTATATA
* * * * *
127016 ACTCGTAGTAAC-ACAAATAATTTCAGAGCAGTTGTATAACAAGTACGGACAACTGTAGAGTGTC
581 ACTCGTAGTAACGA-AAATAACTTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGTATC
* * *
127080 ATAGGGATTTAATCAAAGGTAGTACAATAGAAGAAAGCAAAACATAATAGAGCAGAACAAAGTTG
645 ACAGAGATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACATAATAGAGCAGAACAAAGTTG
127145 AATGGTACATAGCAAAGCATAACT
710 AATGGTACATAGCAAAGCATAACT
* * ** * * *
127169 GAACAGAACAAAAGAAAATGGAATAGAGCAGAAAATATCTTGTTTGTTTATGCAGATGCAGTATT
1 GAACAGAACAAAACAAAACGGAGCAGAGCAGAAAATAACATGTATGTTTATGCAGATGCAGTATT
* * * *
127234 TTTCAAACATATCAAAATGCAGATTTATCAGAAACAGT-TTACCCAAACTTCGTTACACACAAAA
66 TTTCAAACAGATCAGAACGCAGATTTATCAGAAACAGTCTT-CCCAAACTCCGTTACACACAAAA
* * * *
127298 AAAGAGTTCTCCCCTAAGCTCATCCATCCAAAATACACCAAGAAAGTCATCCCGGGTTGATACCA
130 ATAGAGTTCTCCCCGAA-CTCATCCATCCAAAACACACAAAGAAAGTCATCCCGGGTTGATACCA
* * *
127363 CTAAATGTAACACCCCAAACCCGATCTGGAAGTTTAAGCCGATCTTGGACGAGTTACACCAATGC
194 CTAAATGTAACACCCCAAACCCGACCTAGAAGTTTAAGCCGAACTTGGACGAGTTACACCAATGC
* *
127428 ATTGAAAACTGATTTCTTCTCGGGATTTTAATTTTGAAAACCAGAAATTTATTTTTGTTGATTTA
259 ATTGAAAACTGATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTTATTTTT-TCGATTTA
* *
127493 GGTGATTTTGTAGTTTCGTGTTAGAAATTTATTTATACGGATGAGATTATCAAAAGGAAAGCAAG
323 GATGATTTTGTAGTTTCGTGTTAGAAATTTATTTATACGGACGAGATTATCAAAAGGAAAGCAAG
* *
127558 GCAAATCCAGGACAATTTACAAAACCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAATCC
388 GCAAATCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAATCC
* * * *
127623 AAGCTCTCGTACACCATCCAATCCTAAATAAGATGTTTTCCTGAACAGATGAAGGTAAGACAAAG
453 GAGCTCTCGTACACCATCCGATCCTAAATCAGATATTTTCCTGAACAGATGAAGGTAAGACAAAG
* ** ** * *
127688 GGTGAGTTACCAGGCACTACGTATAACCAGGGTAAAATACAAATAAGCAGAGCATACTATATAGC
518 GGTGAGTTACCAAGCACCGCGTATAACCAGACTCAAATACAAATAAGCAGAGCATACTATATAAC
* * * * *
127753 TCGTAGTAACGAAAATAACTTCAGACCGGTTGTATAACCATTACGGACAACTCTAGAGTACCACA
583 TCGTAGTAACGAAAATAACTTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGTATCACA
* * * * * * *
127818 AAGAGTTAATCAAAGGTAGTACAATAGAGCAAAGCAAAACATAACAGAGGAGACCAAAACTT-AA
648 GAGATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACATAATAGAGCAGAAC-AAAGTTGAA
* *
127882 TGGTACAGAGCAGAACTGAACAGAGCAGAACAGAATTGAACA
712 TGGT----A-C---A-T------AGC--AA-AGCA-T-AACT
* ** * * *
127924 GAACAGAACAAAACAAAACGGTGCAGAGCAGAGCATAACATGTACGTTTATGCAGATGCAATTTT
1 GAACAGAACAAAACAAAACGGAGCAGAGCAGAAAATAACATGTATGTTTATGCAGATGCAGTATT
* * *
127989 TTTCAAACAGATTAGAACGCAGATTTATTAGAAACAGTCTTCCTAAACTCCGTTACACACAAAAA
66 TTTCAAACAGATCAGAACGCAGATTTATCAGAAACAGTCTTCCCAAACTCCGTTACACACAAAAA
* * * *
128054 TAGAGTTCTCCCTCGAACTCATCCATCCAAAACATAAAAAGAAAGTCATCCTGGGTTGAGACCAC
131 TAGAGTTCTCCC-CGAACTCATCCATCCAAAACACACAAAGAAAGTCATCCCGGGTTGATACCAC
* * *
128119 TAAATGTAACACCCCAAACCCGACTTAGAAGTTTAAGCCAAACTTGGATG-GATTACACCAATGC
195 TAAATGTAACACCCCAAACCCGACCTAGAAGTTTAAGCCGAACTTGGACGAG-TTACACCAATGC
* * * ** * *
128183 ATTGAAAACTGATTTCATTTCGGGATTTTAAGTTTGAAAATTC-GAAGTACATATTTTTTTCAAA
259 ATTGAAAACTGATTTCTTTTCGGGATTTTAATTTTGAAAA-CCAGAA--ATTTA-TTTTTTCGAT
* * * * *
128247 TTAGATGATTTTTTAGTTTCATTTTAGAAATTTATTTATATGGACGAGATAATCAAAAGGAAAGC
320 TTAGATGATTTTGTAGTTTCGTGTTAGAAATTTATTTATACGGACGAGATTATCAAAAGGAAAGC
*
128312 AAGGCAAATCCAAGACAATTTACAAACCCAAAAGATCAATTCGTAGTTATTTCAGTGTAAAACAA
385 AAGGCAAATCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAA
* * *** * * *
128377 TTCTAGCTCTCGTATTTCGTCCGATCCTAAATCAGATATTTTTCTGAATAGATGAAGGTAAGACA
450 TCCGAGCTCTCGTACACCATCCGATCCTAAATCAGATATTTTCCTGAACAGATGAAGGTAAGACA
* * *
128442 AAGGGTGAGTTACCAAGCACCGCTTATAACCAGTCTCAAATACAAATAAGCAGAGCATATTATAT
515 AAGGGTGAGTTACCAAGCACCGCGTATAACCAGACTCAAATACAAATAAGCAGAGCATACTATAT
* * * *
128507 AACTC-TAGTAACGTAAATAACATAACA-CTAGTTGTATAACCAGTACGGACGACTCTAGAGTAT
580 AACTCGTAGTAACGAAAATAACTTAAGAGC-AGTTGTATAACCAGTACGGACAACTCTAGAGTAT
* * * * * *
128570 CACAGAGATTTAACCAAAGGTAGTACAACAGAACAAA-AAAAACATAATAGAGTAGAA-TAAGAC
644 CACAGAGATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACATAATAGAGCAGAACAAAG-T
* * *
128633 TGAATGGTACAAAGAAAAGCAAAACT
708 TGAATGGTACATAGCAAAGCATAACT
* * * * **
128659 GAATAGAACAGAACAAAACGGAGCGGAGCAGAACAA-AACATGTATGTATATTAAGATGCAGTAT
1 GAACAGAACAAAACAAAACGGAGCAGAGCAGAA-AATAACATGTATGTTTATGCAGATGCAGTAT
* * *
128723 ATTTT-AAACAGATCAGAACGTAGATTTATCAGAAACAGTCTTCCAAAACTCCGTTGCACA-AAA
65 -TTTTCAAACAGATCAGAACGCAGATTTATCAGAAACAGTCTTCCCAAACTCCGTTACACACAAA
** ** * * * ** *
128786 AGA-A-AG-TCATCCTAG-GTTGATACCA-CTAAATGTAACACCCCAAATTTTAAGTCA-CACTT
129 A-ATAGAGTTC-TCCCCGAACTCAT-CCATC-CAA---AACA-CACAAA--GAAAGTCATC-C-C
* * * * *** * **** * *
128845 GGACTAGTTA-CAC-CAATG---CATTGCAAA-CTGA--T-TTCTTTTCAG--GATCTT--A--A
182 GG-GTTGATACCACTAAATGTAACACCCCAAACCCGACCTAGAAGTTTAAGCCGAACTTGGACGA
* ** ** * * * * * ****
128895 TTTGGA--AAACCA---AAAATTCATTTTTCTCGATTTAGGTGATTTTGTAGTTTCG--TGTTAG
246 GTTACACCAATGCATTGAAAACTGA--TTTCT---TTTCGG-GA-TTT-TAATTTTGAAAACCAG
* * * * *** ** * *** * * *
128953 AAATTTATTTATACGGA---CGA-GATTATG-A--AAAG-GAAAGCAAGGCA--AATCCAAGAC-
303 AAATTTATTTTTTC-GATTTAGATGATTTTGTAGTTTCGTGTTAGAAATTTATTTATAC-GGACG
*** * * ** **** * *
129007 A-ATT-T-ACAAACCCAA--AAGATCAATTCGC-AG-TTATTT-C--AGTGTAAA-A-CAGTCCG
366 AGATTATCA-AAAGGAAAGCAAG-GCAAATC-CAAGACAATTTACAAACCCAAAAGATCAATTCG
* ** ** * *
129060 -AG-T-TCTC---GT-ATGCCGTCCGA--TC-C-TAAATCA---G-------AT--G---TTTTC
428 CAGTTATTTCAGTGTAAAACAATCCGAGCTCTCGTACACCATCCGATCCTAAATCAGATATTTTC
* * * * * *
129099 ATGAACAGATGAAGGTAAGACAAAGGGTGAGTAACCAAGCACCACTTATAACCGGGCTCAAATAC
493 CTGAACAGATGAAGGTAAGACAAAGGGTGAGTTACCAAGCACCGCGTATAACCAGACTCAAATAC
* * *
129164 AAATAAGGAGAGCATACTATATAACTCGTAGTAACGCAAATAACTTAAGAGTAGTTGTATAACCA
558 AAATAAGCAGAGCATACTATATAACTCGTAGTAACGAAAATAACTTAAGAGCAGTTGTATAACCA
* * * * ** *
129229 GTACGGTCAACTCTAGAGTATCACAGAGATTTAAGCAAATGTAGTACAACAGAATGAAGTAAAAC
623 GTACGGACAACTCTAGAGTATCACAGAGATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAAC
* * ** * * * *
129294 AGAATAGAGCATAACAAAACTGAATGGTACAGAGCAGAGCAGAACA
688 ATAATAGAGCAGAACAAAGTTGAATGGTACATAGCAAAGCATAACT
* * * * * * ** * *
129340 GAACTGAACAGAACTAAACGGAGTAGAGAAGAACAGGACATGTATGTTTATGCAAATACAGTATT
1 GAACAGAACAAAACAAAACGGAGCAGAGCAGAAAATAACATGTATGTTTATGCAGATGCAGTATT
*
129405 TTTCAAACAGATCAGAACGCAGATTTATCAGAAACAATCTTCCCAAACTCCGTTACACACAAAAA
66 TTTCAAACAGATCAGAACGCAGATTTATCAGAAACAGTCTTCCCAAACTCCGTTACACACAAAAA
* * * * **
129470 TAGAGTTCTCCCCTAAACTCATCCAT-AAGAAACTCACCAAGAAAGTCATCCTAGGTTGATACCA
131 TAGAGTTCTCCCC-GAACTCATCCATCCA-AAACACACAAAGAAAGTCATCCCGGGTTGATACCA
* * * *
129534 CTAAATGTAACACCTCAAACTCGACCTGGAAGTTTAA-CCTGAACTTGGACGAGCTACACCAATG
194 CTAAATGTAACACCCCAAACCCGACCTAGAAGTTTAAGCC-GAACTTGGACGAGTTACACCAATG
* ** * * * *
129598 CATTGAAAACTAATTTCTTTTCCAGATTTTAAATTTGTAAACAAGAAATTCATTTTTTCTGATTT
258 CATTGAAAACTGATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTTATTTTTTC-GATTT
* * * *** ** * *
129663 AGGTGATTTTTTAGTTTCGTGTTCA-AAATTGACCGATTTGGACGGGATTATGAAAAGGAAAGCA
322 AGATGATTTTGTAGTTTCGTGTT-AGAAATTTATTTATACGGACGAGATTATCAAAAGGAAAGCA
* * * *
129727 AGG-AAAACCTAAGACAATTTA-AAACCCAAAAGATCAA-TCTGTAGTTATTTAAGTGTAAAATA
386 AGGCAAATCC-AAGACAATTTACAAACCCAAAAGATCAATTC-GCAGTTATTTCAGTGTAAAACA
* * **
129789 ATTCGAGCTCTCGTACACCGTTTGATCCTAAATC----A----CCTGAACAGATGAAGGTAAGAC
449 ATCCGAGCTCTCGTACACCATCCGATCCTAAATCAGATATTTTCCTGAACAGATGAAGGTAAGAC
* ** * * *
129846 AAAGCGTGAGTTACCAAGCACCGCGTATAATTAGGCTTAAATACAAATAAGTAGAGCATACTATA
514 AAAGGGTGAGTTACCAAGCACCGCGTATAACCAGACTCAAATACAAATAAGCAGAGCATACTATA
* * * **
129911 TAACTCGTAATAACGTAAATAACTTAAAAGCAGTTGCGTAACCAGTACGGACAACTCTAGAGTAT
579 TAACTCGTAGTAACGAAAATAACTTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGTAT
* * * * * * ***
129976 CACAGAAATTTAATCAAAGGTACTGCAACAGAACAAAGCAAAACATAATAGATCAGAATAAAACC
644 CACAGAGATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACATAATAGAGCAGAACAAAGTT
* * * * *
130041 GAATGGTACAGAGCAGAGTAGAATT
709 GAATGGTACATAGCAAAGCATAACT
* * * * *
130066 GAACAAAACAGAAGAAAACGGAGCAGAGAAGAACAA-AACATGTATGTTTATGCAGAGGCAGTAT
1 GAACAGAACAAAACAAAACGGAGCAGAGCAGAA-AATAACATGTATGTTTATGCAGATGCAGTAT
* ** * * * * * *
130130 TTGTCAAGTAGATCATAACGCAGATGTATTAGGAACAATCTTCCCAATCTCCGTTACACAC-AAA
65 TTTTCAAACAGATCAGAACGCAGATTTATCAGAAACAGTCTTCCCAAACTCCGTTACACACAAAA
*** * * * *
130194 ATTTTGCTCTCCCCCAAACTCATCCATCCAAAACACACCAAGAAAGTCATCCCAGGTTGATACCA
130 ATAGAGTTCT-CCCCGAACTCATCCATCCAAAACACACAAAGAAAGTCATCCCGGGTTGATACCA
** ** * * *
130259 CTAAATGTAACACCTAAAACTTGACCTGGAAGTTTAAGTCGAACTTGGACGAGTTTCACCAATGC
194 CTAAATGTAACACCCCAAACCCGACCTAGAAGTTTAAGCCGAACTTGGACGAGTTACACCAATGC
* * **
130324 ATTGAAAACTGATTTCTTTTCGGGATTTTAATTTTGAAAACAACAAATCCATTTTTTTCGATTTA
259 ATTGAAAACTGATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTTA-TTTTTTCGATTTA
* * * * * *
130389 GGTGATTTCGTAGTTTCGTGTTAGAAATTGACTGATACGGACGAGATTATGAAAAGGAAAGCAAG
323 GATGATTTTGTAGTTTCGTGTTAGAAATTTATTTATACGGACGAGATTATCAAAAGGAAAGCAAG
* * *
130454 GCAAATCCAAGACAATTTACAAACCCAAAAGATCAA-TCTGTAATTATTTCAGTGTAAAAAAATC
388 GCAAATCCAAGACAATTTACAAACCCAAAAGATCAATTC-GCAGTTATTTCAGTGTAAAACAATC
* ** * * * * * * * *
130518 TGAGCTCTCGTATGCCGTTCAATCCTAAATCAGTTGTTTTTCTGAACAGAT-AATGGGAGGACAA
452 CGAGCTCTCGTACACCATCCGATCCTAAATCAGATATTTTCCTGAACAGATGAA-GGTAAGACAA
* * * * *
130582 AAGGTGAGTTACCAGGCACCGCGTCT-A--AG-CTTAAATACAAGTAAGCAGAGCATACTATATA
516 AGGGTGAGTTACCAAGCACCGCGTATAACCAGACTCAAATACAAATAAGCAGAGCATACTATATA
* * * * *
130643 ACTCATAATAACGCAAATAACTTAAAAGCAGTTGTATAACCAGTACGGACAACTCTGGAGTAATC
581 ACTCGTAGTAACGAAAATAACTTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGT-ATC
* * * * ****
130708 ACAGAAATTTAATCAAAGGTAGTACAACAGAACAAAGGAAAACATAAGAGAGCAGAACAAAACCA
645 ACAGAGATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACATAATAGAGCAGAACAAAGTTG
* * * *
130773 AATGGTACAGAGCAAAGTAGAAGT
710 AATGGTACATAGCAAAGCATAACT
* * * * * *
130797 AAACAGAATAGAACAGAATGGTATAG-AGGAAAGCA-AAACAAAACATGTATGTTTATGCAGATG
1 GAACAGAACAAAACAAAACGG---AGCA-G--AGCAGAAA-ATAACATGTATGTTTATGCAGATG
* * * * * * *
130860 TAGTTTTTTTCAAACAGAACAGAATGCAGATTTATTAGAAGCAGTCCTT-CCAAACTCCGTTACG
59 CAGTATTTTTCAAACAGATCAGAACGCAGATTTATCAGAAACAGT-CTTCCCAAACTCCGTTACA
* * * * * * * **
130924 CATAAGAATAAAGTTCTGTCCCGAACTCATCTATTCAAAACACACCAAA-AATGTCATCCCAAGT
123 CACAAAAATAGAGTTCT-CCCCGAACTCATCCATCCAAAACACA-CAAAGAAAGTCATCCCGGGT
** * * * * *
130988 TGATACCACTAAATGTAACACTGCAAACTCAACCT-GTAAGTTTAAGCTGAACATGGATGAGTTA
186 TGATACCACTAAATGTAACACCCCAAACCCGACCTAG-AAGTTTAAGCCGAACTTGGACGAGTTA
* * * * * *
131052 CACAAATGCATTGAAAACTGATTTTTTTTCAGGATTTTAAATTTGAAATCCAAAAATTCT-TTTT
250 CACCAATGCATTGAAAACTGATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATT-TATTTT
* * * * * * * * *
131116 TGTAGATTTAGGTGATTTTGAAGTTTCATTTTAGAAATTGACTGATACGGACAAGAATT-T-AAA
314 T-TCGATTTAGATGATTTTGTAGTTTCGTGTTAGAAATTTATTTATACGGACGAG-ATTATCAAA
** ** *
131179 AGGAAAGCAAGGCAAATCCAAGACAATTTACAAACTTAAAAGATCAATTCATAGTTATTTTAGTG
377 AGGAAAGCAAGGCAAATCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTCAGTG
* * * *
131244 TAAAACAATCTGAGCTCTC-T-CATGCCATCCTATCCTAAATCAGATGTTTTCCTTAACAGATGA
442 TAAAACAATCCGAGCTCTCGTACA--CCATCCGATCCTAAATCAGATATTTTCCTGAACAGATGA
* * * *
131307 AGGTAAGACAAAGTGTGAGTTACCAAGCAGCGCGTATAACCAGGCTCAAAGACAAATAAGCAGAG
505 AGGTAAGACAAAGGGTGAGTTACCAAGCACCGCGTATAACCAGACTCAAATACAAATAAGCAGAG
* *
131372 CATACTATATAACTCGTAGTAAC-ACAAATAAATTAAGAGCAGTTGTATAACTAGTACGGACAAC
570 CATACTATATAACTCGTAGTAACGA-AAATAACTTAAGAGCAGTTGTATAACCAGTACGGACAAC
* * * * * *
131436 TCTAGAGTATTACAGAGCTTTAATCAGAGGTAGTACAACATAACAAAGCATAACATAATAGAGCA
634 TCTAGAGTATCACAGAGATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACATAATAGAGCA
* * * * *
131501 GAAGAAAATTGAATGGTACAGAGCAGAGCAGAACT
699 GAACAAAGTTGAATGGTACATAGCAAAGCATAACT
* * *
131536 GAATAGAACATAACAAAACCGAATGATACAAGACAGAGCAGAATTGAATAGA-ATAGACCAAAAC
1 GAACAGAACAAAACAAAA-CG---G-----AG-CAGAGCAGAA---AATA-ACAT-G-----TA-
* *** * *
131600 GGAGCAGAGCAGAATAGAACATGTAGTTTTTTGCAGATGCAGTATTTGTCA-AACAGATCAGAAC
45 TGTTTA-TGCAG-AT-G--CA-GTA--TTTTT-CA-A-ACAG-A----TCAGAAC-G--CAG---
* * ** * *
131664 ACAGATTTATCAAAAATAGTCTATCCAAACTCCGTTACACACAAAATTAGAGTTCTCCCCCAAAC
88 --A--TTTATCAGAAACAGTCTTCCCAAACTCCGTTACACACAAAAATAGAGTTCT-CCCCGAAC
* * * *
131729 TCATCCATCCAAAGCACACCAAA-AAAGTCATCCCAGGTTGATACCACTAAATTTAACACCCTAA
148 TCATCCATCCAAAACACA-CAAAGAAAGTCATCCCGGGTTGATACCACTAAATGTAACACCCCAA
* ** *
131793 ACCCGACCTAGAAGTTTAAGCCAAACTTGGACGAGTTACACCAATGCATTGTGAATTGATTTCTT
212 ACCCGACCTAGAAGTTTAAGCCGAACTTGGACGAGTTACACCAATGCATTGAAAACTGATTTCTT
* * * * * *
131858 TTTGGTATTTTAATTTTGAAAACAAGAAATTCATTTTTGTTGATTTTG-TGATTTTGTAGTTTCG
277 TTCGGGATTTTAATTTTGAAAACCAGAAATTTATTTTT-TCGATTTAGATGATTTTGTAGTTTCG
* * * * * * *
131922 TATTAGAAATTGACTAATACGGATGA-ATTTATCAAAAAGACAGCAAGGCAAATCCAAGACAATT
341 TGTTAGAAATTTATTTATACGGACGAGA-TTATCAAAAGGAAAGCAAGGCAAATCCAAGACAATT
* *** * ** * * * *
131986 TACAAACCCAAAAGATCAATTCGTAGTTATTTTTCTGTAAAATAATCTAAGCTCTCATGCGCCGT
405 TACAAACCCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAATCCGAGCTCTCGTACACCAT
* * * * * * *
132051 CTGATCCTAGATCAAATGTTTTCTTGGACAGATGAAGTTAAGACAAAGGGTGAGTTACCAAGCAC
470 CCGATCCTAAATCAGATATTTTCCTGAACAGATGAAGGTAAGACAAAGGGTGAGTTACCAAGCAC
* * * * * * * * *
132116 TGCATATATCCAGGCTCAAATACAAATAAGTAGAACGTACTATATAACTCGTAGTAATGCAAATA
535 CGCGTATAACCAGACTCAAATACAAATAAGCAGAGCATACTATATAACTCGTAGTAACGAAAATA
* * * * * *
132181 ACTTAAGAGTAG-TGTATAACCACTACGAATAACACTAGAGTATCACAGAGCTTTAATCAAAGGT
600 ACTTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGTATCACAGAGATTTAATCAAAGGT
* * ** * * * * *
132245 AGTTCAACAGAACAAAGCAAAACATAATAGAGCTTAACAAAATCGAATGGTACAGAGCAGAGCAG
665 AGTACAATAGAACAAAGCAAAACATAATAGAGCAGAACAAAGTTGAATGGTACATAGCAAAGCAT
132310 AACT
730 AACT
* * * * * * * *
132314 GAACAGAACATAACAAAATGGAGCAGAGCAGAACAGAACATGTATGTATATGTAGATGCAATACT
1 GAACAGAACAAAACAAAACGGAGCAGAGCAGAAAATAACATGTATGTTTATGCAGATGCAGTATT
* * *
132379 TTTCAAATAGATCAGAATGTAGATTTATCAGAAACAGTCTTCCCAAACTCCGTTACACTA-AAAA
66 TTTCAAACAGATCAGAACGCAGATTTATCAGAAACAGTCTTCCCAAACTCCGTTACAC-ACAAAA
** ** * *
132443 ATAGAGGCCTCCTTTGAACTCATCCATCCAAAACACACCAAA-AAAGTCATCCTGGGTTTATACC
130 ATAGAGTTCTCC-CCGAACTCATCCATCCAAAACACA-CAAAGAAAGTCATCCCGGGTTGATACC
* * * * *
132507 ACTACATCTAACACCCCAAACCTGACCT-GAAAGTTTAAGCCAAACTTGAACGAGTTACACCAAT
193 ACTAAATGTAACACCCCAAACCCGACCTAG-AAGTTTAAGCCGAACTTGGACGAGTTACACCAAT
* * *
132571 GCATTGAAAACTAATTTTTTTTCGGGATTTTAATTTTGAAAACCACAAA-TTAGTTTTTGTCGAT
257 GCATTGAAAACTGATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTTA-TTTTT-TCGAT
* * ** *
132635 TTAGGTGATTTTTTAGTTTCGTGTTAGAAATTTATTTATATAGACGAGATTATAAAAAGGAAAGC
320 TTAGATGATTTTGTAGTTTCGTGTTAGAAATTTATTTATACGGACGAGATTATCAAAAGGAAAGC
* * *
132700 AAGGCAAATCCAAGAAAATTTACAAACTCAAAAGATCAATTCGCAGTTATTTTAGTGTAAAACAA
385 AAGGCAAATCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAA
* * * ** * * * *
132765 TCTGAGCTCTCGTACGCCGTTGGATCCTAAATCAGCTGTTTTTCTGAACAGATGAAGGTAAGAAA
450 TCCGAGCTCTCGTACACCATCCGATCCTAAATCAGATATTTTCCTGAACAGATGAAGGTAAGACA
* * * *
132830 AAGGGTGAGTTACGAAGCACCGTGTATAACCAGGCTCAAATACAAATAAGTAGAGCATACTATAT
515 AAGGGTGAGTTACCAAGCACCGCGTATAACCAGACTCAAATACAAATAAGCAGAGCATACTATAT
* *
132895 AACTCGTAGTAAC-ACAAATAACTTAAGAGCAGTTGCATAACCAGTACGAACAACTCTAGAGTAT
580 AACTCGTAGTAACGA-AAATAACTTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGTAT
* * * * * *
132959 CACAGAGACTTAATCAAAGGTAGTACAACAGAACAAGGAAAAAAAGTATATAGA--AGAACAAAA
644 CACAGAGATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACA-TA-ATAGAGCAGAACAAAG
*** * * * * *
133022 CAAAATGGTACAGAGCAGAGTAGACCT
707 TTGAATGGTACATAGCAAAGCATAACT
* * * * * *
133049 GAACAGAACAGAACAAAACAGAGCAAAGCA-AAACAGAACATGTATGTTTATGCAGTTGAAGTAT
1 GAACAGAACAAAACAAAACGGAGCAGAGCAGAAA-ATAACATGTATGTTTATGCAGATGCAGTAT
* * * * * * * *
133113 TTTTCAAATAGATCAGAATGTAGATTTATCAGATACAGTCTTTCCAAACTCTGATACACATAAAA
65 TTTTCAAACAGATCAGAACGCAGATTTATCAGAAACAGTCTTCCCAAACTCCGTTACACACAAAA
* * ** * * ** *
133178 ATATAGTTTTATCTGAAAATCATCCATCCAAAACACACTGAGAAAGTCATCCCGGGTTGATGCCA
130 ATAGAGTTCTCCCCG-AACTCATCCATCCAAAACACACAAAGAAAGTCATCCCGGGTTGATACCA
* * * **
133243 CTAAATGTAACACACCAAATCCGACCT-GAAAGTTTAAGCCAAACTTGGACGAGTTACAATAATG
194 CTAAATGTAACACCCCAAACCCGACCTAG-AAGTTTAAGCCGAACTTGGACGAGTTACACCAATG
* *
133307 CATTGAAAACTGATTTCCTTTT-GGGATTTTAATTTTGAAAACTAGAAATTCATTTTTCTCGATT
258 CATTGAAAACTGATTT-CTTTTCGGGATTTTAATTTTGAAAACCAGAAATTTATTTTT-TCGATT
* * * * *
133371 TAGGA-AATTTTATAGTTTTGTGTTAGAAATTTATCTATACGAACGAGATTATCAAAAGGAAAGC
321 TA-GATGATTTTGTAGTTTCGTGTTAGAAATTTATTTATACGGACGAGATTATCAAAAGGAAAGC
* * * *
133435 AAGGCAAATCCAAGACAATTTACAAACCCTAAAGATCAATTCGTAATTATTTTAGTGTAAAACAA
385 AAGGCAAATCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAA
* ** * *
133500 TCCGAGCTCTCGTACACCGTTGGATCCTAAATCAGATGTTTTCCTGAACAGAAGAAGGTAAGACA
450 TCCGAGCTCTCGTACACCATCCGATCCTAAATCAGATATTTTCCTGAACAGATGAAGGTAAGACA
* * * * * * * *
133565 GAGGGTTAGTTACCCAA-CACCTCGTATAACTAGGCTCAAATACAAATAAGTAGGGAATACTATA
515 AAGGGTGAGTTA-CCAAGCACCGCGTATAACCAGACTCAAATACAAATAAGCAGAGCATACTATA
* ** ** *
133629 TAAGTCGTAGTAAC-ACAAATAACTTAAGAGCAGTTGTAGCACCAGTAAAGACAACTCTTGAGTA
579 TAACTCGTAGTAACGA-AAATAACTTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGTA
* * * * * *
133693 TAACAGGGATTTAATCAAATGTAGTACAATAGAACAAAGCAAAAAATAATGGAGTAGAACAAAAC
643 TCACAGAGATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACATAATAGAGCAGAAC-AAA-
* * * * *
133758 TGAATGTTATAGAGTAGAACAGAACAGAACAAAACTGAATGATACAAAACAGAGCA
706 -G-TTG-AAT-G-GT---AC---ATAG--C---A---AA-G---C---ATA-A-CT
* *
133814 GAACAGAACAAAACAGAACAAAGCGGA-CTAGAGCAGAACATAACATGTCTGTTTATGCAGATGC
1 GAACAGAACAAAAC---A-AAA-CGGAGC-AGAGCAGAAAATAACATGTATGTTTATGCAGATGC
* * * ** * *
133878 GGTATTTTTTAAACAGATCAGAATGCAGATTTATCAGGTACAGTCTTCCCAAACTCTGTTATACA
60 AGTATTTTTCAAACAGATCAGAACGCAGATTTATCAGAAACAGTCTTCCCAAACTCCGTTACACA
*
133943 CAAAAATAGAGTTCTCCCCCGAACTCATCCATCCAAAACACACCAAGAAAGT
125 CAAAAATAGAGTTCT-CCCCGAACTCATCCATCCAAAACACACAAAGAAAGT
133995 TGTAACAGCC
Statistics
Matches: 6122, Mismatches: 1076, Indels: 648
0.78 0.14 0.08
Matches are distributed among these distances:
676 4 0.00
677 5 0.00
678 11 0.00
679 89 0.01
680 93 0.02
681 148 0.02
682 10 0.00
683 7 0.00
684 9 0.00
685 7 0.00
687 5 0.00
688 5 0.00
689 4 0.00
690 17 0.00
691 7 0.00
693 5 0.00
694 14 0.00
695 2 0.00
696 8 0.00
697 1 0.00
698 9 0.00
699 6 0.00
700 2 0.00
701 4 0.00
702 12 0.00
703 4 0.00
704 9 0.00
705 5 0.00
706 5 0.00
707 6 0.00
708 3 0.00
709 3 0.00
710 8 0.00
711 10 0.00
712 28 0.00
713 142 0.02
714 14 0.00
715 431 0.07
716 17 0.00
717 3 0.00
718 1 0.00
719 5 0.00
720 11 0.00
721 3 0.00
722 5 0.00
723 9 0.00
724 7 0.00
725 240 0.04
726 404 0.07
727 5 0.00
728 5 0.00
729 6 0.00
730 87 0.01
731 113 0.02
732 91 0.01
733 214 0.03
734 432 0.07
735 1193 0.19
736 245 0.04
737 210 0.03
738 19 0.00
739 99 0.02
740 93 0.02
741 1 0.00
742 6 0.00
743 4 0.00
744 5 0.00
745 6 0.00
746 2 0.00
747 8 0.00
748 7 0.00
749 2 0.00
750 9 0.00
751 1 0.00
752 4 0.00
753 9 0.00
754 5 0.00
755 287 0.05
756 91 0.01
757 245 0.04
758 7 0.00
759 2 0.00
760 2 0.00
762 5 0.00
763 4 0.00
764 3 0.00
765 21 0.00
766 1 0.00
768 11 0.00
769 8 0.00
770 129 0.02
771 4 0.00
772 3 0.00
774 1 0.00
776 1 0.00
777 4 0.00
778 163 0.03
779 389 0.06
780 2 0.00
781 1 0.00
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.25
Consensus pattern (733 bp):
GAACAGAACAAAACAAAACGGAGCAGAGCAGAAAATAACATGTATGTTTATGCAGATGCAGTATT
TTTCAAACAGATCAGAACGCAGATTTATCAGAAACAGTCTTCCCAAACTCCGTTACACACAAAAA
TAGAGTTCTCCCCGAACTCATCCATCCAAAACACACAAAGAAAGTCATCCCGGGTTGATACCACT
AAATGTAACACCCCAAACCCGACCTAGAAGTTTAAGCCGAACTTGGACGAGTTACACCAATGCAT
TGAAAACTGATTTCTTTTCGGGATTTTAATTTTGAAAACCAGAAATTTATTTTTTCGATTTAGAT
GATTTTGTAGTTTCGTGTTAGAAATTTATTTATACGGACGAGATTATCAAAAGGAAAGCAAGGCA
AATCCAAGACAATTTACAAACCCAAAAGATCAATTCGCAGTTATTTCAGTGTAAAACAATCCGAG
CTCTCGTACACCATCCGATCCTAAATCAGATATTTTCCTGAACAGATGAAGGTAAGACAAAGGGT
GAGTTACCAAGCACCGCGTATAACCAGACTCAAATACAAATAAGCAGAGCATACTATATAACTCG
TAGTAACGAAAATAACTTAAGAGCAGTTGTATAACCAGTACGGACAACTCTAGAGTATCACAGAG
ATTTAATCAAAGGTAGTACAATAGAACAAAGCAAAACATAATAGAGCAGAACAAAGTTGAATGGT
ACATAGCAAAGCATAACT
Found at i:127910 original size:5 final size:5
Alignment explanation
Indices: 127886--127938 Score: 52
Period size: 5 Copynumber: 10.6 Consensus size: 5
127876 ACTTAATGGT
* * * ** *
127886 ACAGA GCAGA ACTGA ACAGA GCAGA ACAGA ATTGA ACAGA ACAGA ACAAA
1 ACAGA ACAGA ACAGA ACAGA ACAGA ACAGA ACAGA ACAGA ACAGA ACAGA
127936 ACA
1 ACA
127939 AAACGGTGCA
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.55, C:0.19, G:0.21, T:0.06
Consensus pattern (5 bp):
ACAGA
Found at i:131541 original size:45 final size:45
Alignment explanation
Indices: 131492--131599 Score: 119
Period size: 45 Copynumber: 2.4 Consensus size: 45
131482 AGCATAACAT
* * ** *
131492 AATAGAGCAGAAGAAAATTGAATGGTAC-AGAGCAGAGCAGAACTG
1 AATAGAACAGAACAAAACCGAATGATACAAGA-CAGAGCAGAACTG
* *
131537 AATAGAACATAACAAAACCGAATGATACAAGACAGAGCAGAATTG
1 AATAGAACAGAACAAAACCGAATGATACAAGACAGAGCAGAACTG
* *
131582 AATAGAATAGACCAAAAC
1 AATAGAACAGAACAAAAC
131600 GGAGCAGAGC
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
45 49 0.94
46 3 0.06
ACGTcount: A:0.52, C:0.14, G:0.21, T:0.13
Consensus pattern (45 bp):
AATAGAACAGAACAAAACCGAATGATACAAGACAGAGCAGAACTG
Found at i:133068 original size:15 final size:15
Alignment explanation
Indices: 133050--133088 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
133040 AGTAGACCTG
133050 AACAGAACAGAA-CAA
1 AACAGAACA-AAGCAA
*
133065 AACAGAGCAAAGCAA
1 AACAGAACAAAGCAA
133080 AACAGAACA
1 AACAGAACA
133089 TGTATGTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 2 0.10
15 19 0.90
ACGTcount: A:0.64, C:0.21, G:0.15, T:0.00
Consensus pattern (15 bp):
AACAGAACAAAGCAA
Found at i:133781 original size:5 final size:5
Alignment explanation
Indices: 133773--133833 Score: 52
Period size: 5 Copynumber: 12.2 Consensus size: 5
133763 GTTATAGAGT
* * * * *
133773 AGAAC AGAAC AGAAC AAAAC TGAA- TGATAC AAAAC AGAGC AGAAC AGAAC
1 AGAAC AGAAC AGAAC AGAAC AGAAC AGA-AC AGAAC AGAAC AGAAC AGAAC
*
133823 AAAAC AGAAC A
1 AGAAC AGAAC A
133834 AAGCGGACTA
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
4 3 0.07
5 40 0.91
6 1 0.02
ACGTcount: A:0.61, C:0.18, G:0.16, T:0.05
Consensus pattern (5 bp):
AGAAC
Found at i:133794 original size:35 final size:35
Alignment explanation
Indices: 133748--133827 Score: 106
Period size: 35 Copynumber: 2.3 Consensus size: 35
133738 ATAATGGAGT
* * * **
133748 AGAACAAAACTGAATGTTATAGAGTAGAACAGAAC
1 AGAACAAAACTGAATGATACAAAACAGAACAGAAC
*
133783 AGAACAAAACTGAATGATACAAAACAGAGCAGAAC
1 AGAACAAAACTGAATGATACAAAACAGAACAGAAC
133818 AGAACAAAAC
1 AGAACAAAAC
133828 AGAACAAAGC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.11
Consensus pattern (35 bp):
AGAACAAAACTGAATGATACAAAACAGAACAGAAC
Found at i:133823 original size:15 final size:15
Alignment explanation
Indices: 133775--133835 Score: 61
Period size: 15 Copynumber: 4.1 Consensus size: 15
133765 TATAGAGTAG
133775 AACAGAACAGAACAA
1 AACAGAACAGAACAA
* *
133790 AACTGAA-TGATACAA
1 AACAGAACAGA-ACAA
* *
133805 AACAGAGCAGAACAG
1 AACAGAACAGAACAA
*
133820 AACAAAACAGAACAA
1 AACAGAACAGAACAA
133835 A
1 A
133836 GCGGACTAGA
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
14 2 0.06
15 31 0.89
16 2 0.06
ACGTcount: A:0.62, C:0.18, G:0.15, T:0.05
Consensus pattern (15 bp):
AACAGAACAGAACAA
Found at i:136357 original size:104 final size:104
Alignment explanation
Indices: 136218--136444 Score: 328
Period size: 104 Copynumber: 2.2 Consensus size: 104
136208 ATGACCTGGG
** * * **
136218 CACACGCCCATGTCCTTGCCTGTATGGCACACACGGTCTAGGCACATGCTTATGTCCCTGGCCGT
1 CACACGCCCATGTCCTTGCCCATATGGCACACACGGCCTAAGCACATGCCCATGTCCCTGGCCGT
136283 GTGGTCTTAAATCATAAATAGTGAGTTACACAGCCTCGA
66 GTGGTCTTAAATCATAAATAGTGAGTTACACAGCCTCGA
* * * *
136322 CACACGCTCATGTCCTTGCCCATATGGCCCACACGGCCTAAGCATATGCCCATGTCCCTGGTCGT
1 CACACGCCCATGTCCTTGCCCATATGGCACACACGGCCTAAGCACATGCCCATGTCCCTGGCCGT
** * *
136387 GTGGTCTTAAATCATAAATAGTGAGTTACATGGTCTGGA
66 GTGGTCTTAAATCATAAATAGTGAGTTACACAGCCTCGA
136426 CACACGCCCATGTCCTTGC
1 CACACGCCCATGTCCTTGC
136445 TCATGTGAGT
Statistics
Matches: 108, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
104 108 1.00
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.26
Consensus pattern (104 bp):
CACACGCCCATGTCCTTGCCCATATGGCACACACGGCCTAAGCACATGCCCATGTCCCTGGCCGT
GTGGTCTTAAATCATAAATAGTGAGTTACACAGCCTCGA
Found at i:148135 original size:174 final size:174
Alignment explanation
Indices: 147805--148150 Score: 387
Period size: 174 Copynumber: 2.0 Consensus size: 174
147795 CAGCAAGACT
* * * * * **
147805 TGATGCAATCTGCTCTACTGCCACTTTAGAGAGATAAGATCCATCATTTTGATTCGCTCCACTGC
1 TGATGCAATCCGCTCTACTGCAACTTCAGAGAGATAAGATCCATCATTTTAATCCGCTCCACTAA
* * **
147870 AACCTCAGGGAGATAGGATTGGTCAACTTCGATCTGCCCCACTGCAAATTCAGGGGTATAAGACC
66 AACCTCAGGGAGATAGGATTGATCAACTTCAATCTGCCCCACTGCAAACACAGGGGTATAAGACC
* * * **
147935 TGCTTACTCAGTCTGCTCTGCTGCAACTTCAGGGAGATAAGATC
131 TGCATACTCAGTCTACCCCACTGCAACTTCAGGGAGATAAGATC
* * * *
147979 TGATGCGATCCGCTCTACTGTAACTTCAGAGAGATAAGATCTATTATTTTAATCCGCTCCACTAA
1 TGATGCAATCCGCTCTACTGCAACTTCAGAGAGATAAGATCCATCATTTTAATCCGCTCCACTAA
* * *
148044 AACTTCAGGGAGATAGGATT-ATCAGA-TTCAATCTGCTCCACTGCAACCACAGGGAG-ATAAGA
66 AACCTCAGGGAGATAGGATTGATCA-ACTTCAATCTGCCCCACTGCAAACACAGGG-GTATAAGA
* *
148106 CCTGCCAT-CTTC-GATTTACCCCACTGCAACTTCAGGGGGATAAGA
129 CCTG-CATAC-TCAG-TCTACCCCACTGCAACTTCAGGGAGATAAGA
148151 CCTGCTTACT
Statistics
Matches: 142, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
173 38 0.27
174 104 0.73
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (174 bp):
TGATGCAATCCGCTCTACTGCAACTTCAGAGAGATAAGATCCATCATTTTAATCCGCTCCACTAA
AACCTCAGGGAGATAGGATTGATCAACTTCAATCTGCCCCACTGCAAACACAGGGGTATAAGACC
TGCATACTCAGTCTACCCCACTGCAACTTCAGGGAGATAAGATC
Found at i:148192 original size:44 final size:45
Alignment explanation
Indices: 148077--148195 Score: 145
Period size: 44 Copynumber: 2.7 Consensus size: 45
148067 AGATTCAATC
*
148077 TGCTCCACTGCAACCACAGGGAGATAAGACCTGCCATCTTCGATT
1 TGCTCCACTGCAACCTCAGGGAGATAAGACCTGCCATCTTCGATT
* * * * *
148122 TACCCCACTGCAACTTCAGGGGGATAAGACCTG-CTTAC-TC-AGTT
1 TGCTCCACTGCAACCTCAGGGAGATAAGACCTGCCAT-CTTCGA-TT
148166 TGCTCCACTGCAACCTCAGGGAGATAAGAC
1 TGCTCCACTGCAACCTCAGGGAGATAAGAC
148196 TCGGTGGCTT
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
43 1 0.02
44 32 0.52
45 29 0.47
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (45 bp):
TGCTCCACTGCAACCTCAGGGAGATAAGACCTGCCATCTTCGATT
Found at i:149656 original size:7 final size:7
Alignment explanation
Indices: 149637--149678 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
149627 TTAGCCTCTC
149637 CATTTTT
1 CATTTTT
149644 -ACTTTTT
1 CA-TTTTT
149651 CATTTTT
1 CATTTTT
149658 CA-TTTT
1 CATTTTT
149664 CATTTTT
1 CATTTTT
149671 CATCTTTT
1 CAT-TTTT
149679 TTTTTGGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
6 7 0.23
7 19 0.61
8 5 0.16
ACGTcount: A:0.14, C:0.17, G:0.00, T:0.69
Consensus pattern (7 bp):
CATTTTT
Found at i:149683 original size:13 final size:13
Alignment explanation
Indices: 149637--149673 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
149627 TTAGCCTCTC
*
149637 CATTTTTACTTTTT
1 CATTTTT-CATTTT
149651 CATTTTTCATTTT
1 CATTTTTCATTTT
149664 CATTTTTCAT
1 CATTTTTCAT
149674 CTTTTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (13 bp):
CATTTTTCATTTT
Found at i:156800 original size:21 final size:21
Alignment explanation
Indices: 156770--156818 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
156760 GCAGGTGTAG
*
156770 TCGTATGAGGGTGGACGTGGC
1 TCGTACGAGGGTGGACGTGGC
156791 TCGTACGAGGGTGGACGTGGC
1 TCGTACGAGGGTGGACGTGGC
*
156812 ACGTACG
1 TCGTACG
156819 GATGTGCTCG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.16, C:0.18, G:0.45, T:0.20
Consensus pattern (21 bp):
TCGTACGAGGGTGGACGTGGC
Found at i:166238 original size:25 final size:25
Alignment explanation
Indices: 166210--166274 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
166200 CTGTACATGT
* *
166210 ATGCTCAC-TCGAGTTGTAAATTAGA
1 ATGCTCACAT-GAGCTGTAAATCAGA
166235 ATGCTCACATGAGCTGTAAATCAGA
1 ATGCTCACATGAGCTGTAAATCAGA
*
166260 ATGCTTACATGAGCT
1 ATGCTCACATGAGCT
166275 ATGAAAATGG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
25 35 0.97
26 1 0.03
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.29
Consensus pattern (25 bp):
ATGCTCACATGAGCTGTAAATCAGA
Found at i:167238 original size:76 final size:76
Alignment explanation
Indices: 167148--167303 Score: 276
Period size: 76 Copynumber: 2.1 Consensus size: 76
167138 TCTCAAAAAC
* *
167148 ATAAAAATTATTAAAAGTAGGGCCAAAATCACTTACCATTATTGTCCGATTGATGAAGAAGAAAA
1 ATAAAAATTATTAAAAATAGGGCCAAAATCACTTACCATTATTGTCCAATTGATGAAGAAGAAAA
*
167213 CTAAAAAGATG
66 CTAAAAAGAGG
*
167224 ATAAAAATTATTAAAAATAGGGCCAAAATCACTTACCATTATTGTCCAATTGATGAAGCAGAAAA
1 ATAAAAATTATTAAAAATAGGGCCAAAATCACTTACCATTATTGTCCAATTGATGAAGAAGAAAA
167289 CTAAAAAGAGG
66 CTAAAAAGAGG
167300 ATAA
1 ATAA
167304 CCAATTAACC
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.49, C:0.12, G:0.15, T:0.24
Consensus pattern (76 bp):
ATAAAAATTATTAAAAATAGGGCCAAAATCACTTACCATTATTGTCCAATTGATGAAGAAGAAAA
CTAAAAAGAGG
Found at i:171380 original size:16 final size:15
Alignment explanation
Indices: 171359--171388 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
171349 CAAACATGCT
171359 TTAACACATTATCAAA
1 TTAACACATT-TCAAA
171375 TTAACACATTTCAA
1 TTAACACATTTCAA
171389 CAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (15 bp):
TTAACACATTTCAAA
Found at i:172538 original size:25 final size:25
Alignment explanation
Indices: 172508--172570 Score: 108
Period size: 25 Copynumber: 2.5 Consensus size: 25
172498 TTGTACATGT
*
172508 ATGCTCACATGAGTTGTAAATTAGA
1 ATGCTCACATGAGTTATAAATTAGA
172533 ATGCTCACATGAGTTATAAATTAGA
1 ATGCTCACATGAGTTATAAATTAGA
*
172558 ATGCTCATATGAG
1 ATGCTCACATGAG
172571 CTGTGAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (25 bp):
ATGCTCACATGAGTTATAAATTAGA
Found at i:182214 original size:40 final size:40
Alignment explanation
Indices: 182132--182214 Score: 123
Period size: 40 Copynumber: 2.1 Consensus size: 40
182122 TTCCCAGGAA
* *
182132 ATTTAAACTTGGTAGATGGTATAAGGTTCTTTTCCTTAGG
1 ATTTAAACTTGGTAGATGGTATAAGGTTCCTTTCCTCAGG
*
182172 ATTTAAACTTGGTAGATGGTATAAGG-TCCTTTCCATCGGG
1 ATTTAAACTTGGTAGATGGTATAAGGTTCCTTTCC-TCAGG
182212 ATT
1 ATT
182215 CAACCTTGAA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
39 7 0.18
40 32 0.82
ACGTcount: A:0.25, C:0.12, G:0.23, T:0.40
Consensus pattern (40 bp):
ATTTAAACTTGGTAGATGGTATAAGGTTCCTTTCCTCAGG
Found at i:183468 original size:61 final size:61
Alignment explanation
Indices: 183373--183494 Score: 235
Period size: 61 Copynumber: 2.0 Consensus size: 61
183363 AGGCACACAT
183373 GACTGAGTTTCCTCATCTTGCTCCAACCTCGACAGATGATCAACTATTTGATTTTCGACAC
1 GACTGAGTTTCCTCATCTTGCTCCAACCTCGACAGATGATCAACTATTTGATTTTCGACAC
*
183434 GACTGAGTTTCCTCATCTTGCTCCAACCTCGACAGATGATCAACTATTTGATTTTTGACAC
1 GACTGAGTTTCCTCATCTTGCTCCAACCTCGACAGATGATCAACTATTTGATTTTCGACAC
183495 CTTTTCTATC
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.34
Consensus pattern (61 bp):
GACTGAGTTTCCTCATCTTGCTCCAACCTCGACAGATGATCAACTATTTGATTTTCGACAC
Found at i:189874 original size:37 final size:37
Alignment explanation
Indices: 189828--189908 Score: 135
Period size: 37 Copynumber: 2.2 Consensus size: 37
189818 CTATTCTCAG
* *
189828 TAGAATTCTAAATAAATAAAAAATGGTTCGAGTTATA
1 TAGACTTCTAAATAAATAAAAAATGGTTCAAGTTATA
*
189865 TAGACTTCTAAATAAATAAAAAATGGTTCAAGTTTTA
1 TAGACTTCTAAATAAATAAAAAATGGTTCAAGTTATA
189902 TAGACTT
1 TAGACTT
189909 GTTCAACAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.35
Consensus pattern (37 bp):
TAGACTTCTAAATAAATAAAAAATGGTTCAAGTTATA
Found at i:215901 original size:88 final size:88
Alignment explanation
Indices: 215775--217810 Score: 3010
Period size: 88 Copynumber: 23.1 Consensus size: 88
215765 GTCAGTACAA
* * * **
215775 GAAGGCAAGA-CTTGTT-TCTTCAACCAACTCC-GCTACAACCGAGAGAGGCAACATTTGTGTCT
1 GAAGGCAAGATCTT-TTGTCTTCAACCAGCTCCATC-ACAACCGAGGGAGGCAAGGTTTGTGTCT
*
215837 TTGACCTGCTTCGCTGTCAATGCAG
64 TCGACCTGCTTCGCTGTCAATGCAG
* *
215862 GAAGGCAAGATCTATTGTCTTCAACCAGCTCCACCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
* *
215927 GAACTGCTTCGCTGTCAATGTAG
66 GACCTGCTTCGCTGTCAATGCAG
* * * *
215950 GAAGGTAAGATATTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTT
1 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
216015 GACCTGCTTCGCTGTCAATGCAG
66 GACCTGCTTCGCTGTCAATGCAG
* *
216038 GAAGGCAATATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
*
216103 GACCTGCTTCGCTGTCAATACAG
66 GACCTGCTTCGCTGTCAATGCAG
* * *
216126 GAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGAAAGGTTTGTGTCTTT
1 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
* *
216191 AACCTACTTCGCTGTCAATGCAG
66 GACCTGCTTCGCTGTCAATGCAG
* * *
216214 GAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGAAAGGTTTGTGTCTTT
1 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
* *
216279 AACCTACTTCGCTGTCAATGCAG
66 GACCTGCTTCGCTGTCAATGCAG
* *
216302 GAAGGCAAGATCTTTTGTCTTCAACAAGCTCCATCACAACCGAGTGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
* *
216367 GATCTGCTTCACTGTCAATGCAG
66 GACCTGCTTCGCTGTCAATGCAG
* ** * *
216390 GAAGGTAAGATCTTTTGTCTTCAACCAATTCCATCACAATCGAGAGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
* *
216455 GACCTGCTTCACTGTCAATGTAG
66 GACCTGCTTCGCTGTCAATGCAG
*
216478 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
*
216543 GACTTGCTTCGCTGTCAATGCAG
66 GACCTGCTTCGCTGTCAATGCAG
* *
216566 GAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
*
216631 GACCTGCTTCGCTGTCAATGTAG
66 GACCTGCTTCGCTGTCAATGCAG
* * *
216654 GAAGGCAATATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTT
1 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
216719 GACCTGCTTCGCTGTCAATGCAG
66 GACCTGCTTCGCTGTCAATGCAG
216742 GAAGGCAAGAT-TTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTT
1 GAAGGCAAGATCTT-TTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTT
* *
216806 CGATCTGATTCGCTGTCAATGCAG
65 CGACCTGCTTCGCTGTCAATGCAG
* * *
216830 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGAAAGGTTTGTGTCTTT
1 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
216895 GACCTGCTTCGCTGTCAATGCAG
66 GACCTGCTTCGCTGTCAATGCAG
* *
216918 GAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACTGAGGGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
** *
216983 GATTTACTTCGCTGTCAATGCAG
66 GACCTGCTTCGCTGTCAATGCAG
* *
217006 GAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTT
1 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
217071 GACCTGCTTCGCTGTCAATGCAG
66 GACCTGCTTCGCTGTCAATGCAG
* * *
217094 GAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGCTTGTGTCTTT
1 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
* *
217159 AACCTGATTCGCTGTCAATGCAG
66 GACCTGCTTCGCTGTCAATGCAG
* *
217182 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTCTCTTC
1 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
** *
217247 GAGATGCTTCGTTGTCAATGCAG
66 GACCTGCTTCGCTGTCAATGCAG
* * *
217270 GAAGGCAAGATCTTTTGTCTTCAACCCGCT-CATTACAACCGAGAGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
* * * *
217334 GATCTGATTCGCTGTCCATACAG
66 GACCTGCTTCGCTGTCAATGCAG
* * * * * *
217357 GATGGCATGATATTTTATCTTCAACCAGCTCCATCACAACCGA-GGAGGTGCAAGGTTGGGGTCT
1 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGGA-G-GCAAGGTTTGTGTCT
* * *
217421 TCAACTTGTTTC-CTTGTCAATGCAG
64 TCGACCTGCTTCGC-TGTCAATGCAG
* * *
217446 GAGGGAAAGACCTTTTGTCTTCAAACC-GCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTT
1 GAAGGCAAGATCTTTTGTCTTC-AACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTT
* *
217510 CGATCTGCTTCACTGTCAATGCAG
65 CGACCTGCTTCGCTGTCAATGCAG
* * * *
217534 GATGGCAAGATCGTTTGTCTTCAACCAGCTCCATAACAACCGAGAGAGGCAAGGTTTGTGTCTTC
1 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
*
217599 GACCTGCTTCGCTGACAATGCAG
66 GACCTGCTTCGCTGTCAATGCAG
* *
217622 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCGAGGGAGGCAAGGTTTGTGTCTTT
1 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
*
217687 GACCTACTTCGCTGTCAATGCAG
66 GACCTGCTTCGCTGTCAATGCAG
* * *
217710 GAAGGCAAGATCTGTTGTCTT-ACACCAGCTCCATCACAACCGAGGGAGGTAATGTTTGTGTCTT
1 GAAGGCAAGATCTTTTGTCTTCA-ACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTT
** *
217774 CGATTTGATTCGCTGTCAATGCAG
65 CGACCTGCTTCGCTGTCAATGCAG
217798 GAAGGCAAGATCT
1 GAAGGCAAGATCT
Statistics
Matches: 1776, Mismatches: 159, Indels: 27
0.91 0.08 0.01
Matches are distributed among these distances:
87 94 0.05
88 1608 0.91
89 67 0.04
90 7 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (88 bp):
GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGGGAGGCAAGGTTTGTGTCTTC
GACCTGCTTCGCTGTCAATGCAG
Found at i:217585 original size:44 final size:42
Alignment explanation
Indices: 217532--217674 Score: 112
Period size: 44 Copynumber: 3.2 Consensus size: 42
217522 CTGTCAATGC
217532 AGGATGGCAAGATCGTTTGTCTTCAACCAGCTCCATAACAACCG
1 AGGA-GGCAAGATC-TTTGTCTTCAACCAGCTCCATAACAACCG
* * * * *
217576 AGAGAGGCAAGGT-TTGTGTCTTCGACCTGCTTCGC-TGACAA-TG
1 AG-GAGGCAAGATCTT-TGTCTTCAACCAGC-TC-CATAACAACCG
* *
217619 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCTATCACAACCG
1 -AGG-AGGCAAGATC-TTTGTCTTCAACCAGCTCCATAACAACCG
217664 AGGGAGGCAAG
1 A-GGAGGCAAG
217675 GTTTGTGTCT
Statistics
Matches: 77, Mismatches: 11, Indels: 22
0.70 0.10 0.20
Matches are distributed among these distances:
42 2 0.03
43 14 0.18
44 41 0.53
45 18 0.23
46 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.23
Consensus pattern (42 bp):
AGGAGGCAAGATCTTTGTCTTCAACCAGCTCCATAACAACCG
Found at i:217716 original size:44 final size:44
Alignment explanation
Indices: 217580--217718 Score: 124
Period size: 44 Copynumber: 3.2 Consensus size: 44
217570 CAACCGAGAG
* *
217580 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGACAATGCAGGA
1 AGGCAAGGTTTGTGTCTTCGACCTACTTCGCTGTCAATGCAGGA
* * * * ** *
217624 AGGCAAGATCTTTTGTCTTCAACC-AGC-T--CTATCACAACCGAGGG
1 AGGCAAGGT-TTGTGTCTTCGACCTA-CTTCGCTGTCA-ATGC-AGGA
*
217668 AGGCAAGGTTTGTGTCTTTGACCTACTTCGCTGTCAATGCAGGA
1 AGGCAAGGTTTGTGTCTTCGACCTACTTCGCTGTCAATGCAGGA
217712 AGGCAAG
1 AGGCAAG
217719 ATCTGTTGTC
Statistics
Matches: 70, Mismatches: 17, Indels: 16
0.68 0.17 0.16
Matches are distributed among these distances:
42 4 0.06
43 14 0.20
44 32 0.46
45 15 0.21
46 5 0.07
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (44 bp):
AGGCAAGGTTTGTGTCTTCGACCTACTTCGCTGTCAATGCAGGA
Done.