Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_165 ID=scaffold_165-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10273
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.34


Found at i:1668 original size:28 final size:28

Alignment explanation


    Indices: 1607--1668  Score: 72
    Period size: 28  Copynumber: 2.2  Consensus size: 28

       1597 TGTTAAGATG

                            *           
       1607 ACTATATAAAAATATTCAATAAATAAAA
          1 ACTATATAAAAATATTAAATAAATAAAA

             *         *          *     
       1635 AATATATAAAATTATTAAAT-ATTAAAA
          1 ACTATATAAAAATATTAAATAAATAAAA

                   
       1662 TACTATA
          1 -ACTATA

       1669 ACATAAATAT


Statistics
Matches: 28,  Mismatches: 5, Indels: 2
        0.80            0.14        0.06

Matches are distributed among these distances:
  27    6  0.21
  28   22  0.79

ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34


Consensus pattern (28 bp):   
ACTATATAAAAATATTAAATAAATAAAA
Done.