Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_168 ID=scaffold_168-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10325
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.35

Warning! 100 characters in sequence are not A, C, G, or T


Found at i:904 original size:43 final size:43

Alignment explanation


    Indices: 792--905  Score: 108
    Period size: 43  Copynumber: 2.7  Consensus size: 43

        782 TGTGTTTTCG

                    *      * * *        *        *    *
        792 TGTAAGACAACGTCTAGTACGTTGGCATTGACTTGTGTTTACG
          1 TGTAAGACCACGTCTGGGAAGTTGGCATCGACTTGTGATTACA

                                                          
        835 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGA-TATGTGATTACA
          1 TGTAAGACCAC-GTCTGGGA-AGTTGGCATCGACT-TGTGATTACA

                               *        
        878 TGTAAGACCACGTCTGGGATGTTGGCAT
          1 TGTAAGACCACGTCTGGGAAGTTGGCAT

        906 TGTACGAGCT


Statistics
Matches: 58,  Mismatches: 8, Indels: 10
        0.76            0.11        0.13

Matches are distributed among these distances:
  42    3  0.05
  43   53  0.91
  44    2  0.03

ACGTcount: A:0.24, C:0.18, G:0.28, T:0.31


Consensus pattern (43 bp):   
TGTAAGACCACGTCTGGGAAGTTGGCATCGACTTGTGATTACA
Done.