Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_184 ID=scaffold_184-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9767
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33


Found at i:9431 original size:20 final size:20

Alignment explanation


    Indices: 9394--9432  Score: 51
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       9384 GCCATTGCAA

                         *      
       9394 AAAAAAAAAAGAATCAAAAG
          1 AAAAAAAAAAGAAGCAAAAG

                  *    *       
       9414 AAAAAAGAAAGGAGCAAAA
          1 AAAAAAAAAAGAAGCAAAA

       9433 AGGTTACAAA


Statistics
Matches: 16,  Mismatches: 3, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  20   16  1.00

ACGTcount: A:0.77, C:0.05, G:0.15, T:0.03


Consensus pattern (20 bp):   
AAAAAAAAAAGAAGCAAAAG
Done.