Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62769430
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1067035 characters in sequence are not A, C, G, or T
File 104 of 206
Found at i:30649356 original size:13 final size:13
Alignment explanation
Indices: 30649338--30649362 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30649328 TGTTTGGAAA
30649338 TATGTTTTTATGT
1 TATGTTTTTATGT
30649351 TATGTTTTTATG
1 TATGTTTTTATG
30649363 GTAATGCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (13 bp):
TATGTTTTTATGT
Found at i:30652191 original size:25 final size:25
Alignment explanation
Indices: 30652151--30652245 Score: 93
Period size: 25 Copynumber: 3.8 Consensus size: 25
30652141 TCATGTACAT
* *
30652151 GTATGCTCATATGAGTTGTGAATCG
1 GTATGCTCACACGAGTTGTGAATCG
* *
30652176 ATATGCTCACTCGAGTTGT-AGATCG
1 GTATGCTCACACGAGTTGTGA-ATCG
* * * *
30652201 GTATGCTCTCACGAGCTATAAATCG
1 GTATGCTCACACGAGTTGTGAATCG
*
30652226 GTATGCTCACACAAGTTGTG
1 GTATGCTCACACGAGTTGTG
30652246 GGTCAGAACA
Statistics
Matches: 54, Mismatches: 14, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
24 1 0.02
25 52 0.96
26 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (25 bp):
GTATGCTCACACGAGTTGTGAATCG
Found at i:30659886 original size:49 final size:49
Alignment explanation
Indices: 30659789--30659903 Score: 126
Period size: 49 Copynumber: 2.3 Consensus size: 49
30659779 GCAGTGTGGT
* * * ** * *
30659789 AGGCTGTGTGGAGCACACGGTCGTTTGAAACATTGTAGATCGTGTGGCC
1 AGGCCGTGTGGAGCACACGATCGTGTGAAACATTACAGACCGTATGGCC
30659838 AGGCCGTGTGGAGCACACGATCGTGTGAAAC-TCTACAGACCGTATGGCC
1 AGGCCGTGTGGAGCACACGATCGTGTGAAACAT-TACAGACCGTATGGCC
*
30659887 AGACCGTGTAGG-GCACA
1 AGGCCGTGT-GGAGCACA
30659904 TGGCCATGTG
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
48 1 0.02
49 53 0.95
50 2 0.04
ACGTcount: A:0.23, C:0.23, G:0.33, T:0.21
Consensus pattern (49 bp):
AGGCCGTGTGGAGCACACGATCGTGTGAAACATTACAGACCGTATGGCC
Found at i:30660299 original size:26 final size:26
Alignment explanation
Indices: 30660250--30660304 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 26
30660240 ATTGCAGTTA
*
30660250 TGGCAGCTAGACTGCAAATTTATGTG
1 TGGCAGCTAGACTGCAAATTTATGAG
30660276 TGGCAGCTCAG-CTGC-AATTATATGAG
1 TGGCAGCT-AGACTGCAAATT-TATGAG
30660302 TGG
1 TGG
30660305 TACACCGCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 4 0.15
26 20 0.77
27 2 0.08
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
TGGCAGCTAGACTGCAAATTTATGAG
Found at i:30683601 original size:53 final size:53
Alignment explanation
Indices: 30683521--30683628 Score: 171
Period size: 53 Copynumber: 2.0 Consensus size: 53
30683511 ATTGACAAGG
*
30683521 CCGTGTGACAAAGCCCAGGCCATGTGGCATAGGGACATGGCCATGTGGCCAAA
1 CCGTGTGACAAAGCCCAGGCCACGTGGCATAGGGACATGGCCATGTGGCCAAA
* * * *
30683574 CCGTGTGATAAAGCCCAGGCCGCGTGGCATTGGGACATGGCCATGTGGCGAAA
1 CCGTGTGACAAAGCCCAGGCCACGTGGCATAGGGACATGGCCATGTGGCCAAA
30683627 CC
1 CC
30683629 ATGTAACTAA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.24, C:0.27, G:0.33, T:0.16
Consensus pattern (53 bp):
CCGTGTGACAAAGCCCAGGCCACGTGGCATAGGGACATGGCCATGTGGCCAAA
Found at i:30687446 original size:27 final size:27
Alignment explanation
Indices: 30687188--30687446 Score: 266
Period size: 27 Copynumber: 9.6 Consensus size: 27
30687178 GGGTATAATA
** * *
30687188 GTCATTTTACCCTATGAAGGTAATTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
30687215 GTCATTTTACCCTATAGGCGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
30687242 GTTATTCTACCATATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
30687269 ATCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
30687296 ATCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
30687323 ATCATTCTACCCTGTGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * * *
30687350 ATCATTCTACCCTGTAGGGGTATTTAG
1 GTCATTTTACCCTATGGGGGTATTTCG
* ** * **
30687377 GTCATTTTACCCTATAGATGAATTTTA
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
30687404 GTCATTCTACCCTATGTGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
30687431 GTCATTTTACCCTATG
1 GTCATTTTACCCTATG
30687447 AAGTTATTTT
Statistics
Matches: 196, Mismatches: 36, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 196 1.00
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:30687455 original size:81 final size:81
Alignment explanation
Indices: 30687189--30687455 Score: 297
Period size: 81 Copynumber: 3.3 Consensus size: 81
30687179 GGTATAATAG
* * *
30687189 TCATTTTACCCTATGAAGGTAATTCA-GTCATTTTACCCTATAGGCGTATTTCAGTTATTCTACC
1 TCATTTTACCCTATGAAGGT-ATTTAGGTCATTTTACCCTATAGGCGTATTTTAGTCATTCTACC
*
30687253 ATATGGGGGTATTTCGA
65 CTATGGGGGTATTTCGA
** * * * * *
30687270 TCATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTA-TTTCGATCATTCTACC
1 TCATTTTACCCTATGAAGGTATTTAGGTCATTTTACCCTATAGGCGTATTTTAG-TCATTCTACC
*
30687334 CTGTGGGGGTATTTCGA
65 CTATGGGGGTATTTCGA
* * * ** *
30687351 TCATTCTACCCTGT-AGGGGTATTTAGGTCATTTTACCCTATAGATGAATTTTAGTCATTCTACC
1 TCATTTTACCCTATGA-AGGTATTTAGGTCATTTTACCCTATAGGCGTATTTTAGTCATTCTACC
* *
30687415 CTATGTGGGTATTTCGG
65 CTATGGGGGTATTTCGA
*
30687432 TCATTTTACCCTATGAAGTTATTT
1 TCATTTTACCCTATGAAGGTATTT
30687456 TGGTTATAAC
Statistics
Matches: 152, Mismatches: 29, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
80 6 0.04
81 141 0.93
82 5 0.03
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (81 bp):
TCATTTTACCCTATGAAGGTATTTAGGTCATTTTACCCTATAGGCGTATTTTAGTCATTCTACCC
TATGGGGGTATTTCGA
Found at i:30688095 original size:14 final size:14
Alignment explanation
Indices: 30688076--30688108 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
30688066 ATCCCAATAT
30688076 TCTCTCCTCAAATC
1 TCTCTCCTCAAATC
*
30688090 TCTCTCCTCAATTC
1 TCTCTCCTCAAATC
30688104 TCTCT
1 TCTCT
30688109 ATGATCAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.15, C:0.42, G:0.00, T:0.42
Consensus pattern (14 bp):
TCTCTCCTCAAATC
Found at i:30695963 original size:36 final size:36
Alignment explanation
Indices: 30695913--30695990 Score: 129
Period size: 36 Copynumber: 2.2 Consensus size: 36
30695903 TTTTGTTGTC
** *
30695913 ATAAAACTTTTGAATAACTTAGAATACTTAATAATT
1 ATAAAACTCATGAATAACTTAAAATACTTAATAATT
30695949 ATAAAACTCATGAATAACTTAAAATACTTAATAATT
1 ATAAAACTCATGAATAACTTAAAATACTTAATAATT
30695985 ATAAAA
1 ATAAAA
30695991 AATTCGGAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.53, C:0.09, G:0.04, T:0.35
Consensus pattern (36 bp):
ATAAAACTCATGAATAACTTAAAATACTTAATAATT
Found at i:30703177 original size:25 final size:25
Alignment explanation
Indices: 30703149--30703290 Score: 119
Period size: 25 Copynumber: 5.7 Consensus size: 25
30703139 TCTGACCCAC
30703149 AGCTCGTGAGAGCATACTGATTTAA
1 AGCTCGTGAGAGCATACTGATTTAA
* * **
30703174 AGCTTGTGTGAGCATACCAATTTAGA
1 AGCTCGTGAGAGCATACTGATTTA-A
*
30703200 A-CTCGTGAGAGCATACTGATTTAC
1 AGCTCGTGAGAGCATACTGATTTAA
* * * *
30703224 AGCTTGTGTGCA-CATA-TCAATTTAC
1 AGCTCGTGAG-AGCATACT-GATTTAA
* *
30703249 AGCTCGTGAGAGCATATTGATTTAT
1 AGCTCGTGAGAGCATACTGATTTAA
* *
30703274 AGCTCGAGTGAGCATAC
1 AGCTCGTGAGAGCATAC
30703291 ATGTACATGA
Statistics
Matches: 92, Mismatches: 19, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
24 3 0.03
25 85 0.92
26 4 0.04
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (25 bp):
AGCTCGTGAGAGCATACTGATTTAA
Found at i:30703228 original size:50 final size:50
Alignment explanation
Indices: 30703151--30703290 Score: 192
Period size: 50 Copynumber: 2.8 Consensus size: 50
30703141 TGACCCACAG
*
30703151 CTCGTGAGAGCATACTGATTTAAAGCTTGTGTGAGCATACCAATTTAGAA
1 CTCGTGAGAGCATACTGATTTAAAGCTTGTGTGAGCATACCAATTTACAA
* * *
30703201 CTCGTGAGAGCATACTGATTTACAGCTTGTGTGCA-CATATCAATTTACAG
1 CTCGTGAGAGCATACTGATTTAAAGCTTGTGTG-AGCATACCAATTTACAA
* * * *
30703251 CTCGTGAGAGCATATTGATTTATAGCTCGAGTGAGCATAC
1 CTCGTGAGAGCATACTGATTTAAAGCTTGTGTGAGCATAC
30703291 ATGTACATGA
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
49 1 0.01
50 77 0.97
51 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (50 bp):
CTCGTGAGAGCATACTGATTTAAAGCTTGTGTGAGCATACCAATTTACAA
Found at i:30731094 original size:11 final size:11
Alignment explanation
Indices: 30731072--30731101 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
30731062 TTTGAATGTT
30731072 CATTGTATGAAA
1 CATTG-ATGAAA
30731084 CATTGATGAAA
1 CATTGATGAAA
30731095 CATTGAT
1 CATTGAT
30731102 ATATTTGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (11 bp):
CATTGATGAAA
Found at i:30732242 original size:50 final size:49
Alignment explanation
Indices: 30732203--30732446 Score: 245
Period size: 50 Copynumber: 4.9 Consensus size: 49
30732193 TATTGAAATT
*
30732203 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CAAG
* *
30732253 ATGAGAGGTTCCATGTAAGACTATGTCTGGGACATGGCGTTGGCACCAAG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CAAG
* ** * * * *
30732303 ATGAAAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACTGAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCAC-AAG
** * * * ** *
30732353 ATGAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCAGTAC
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACAAG
* * ** * *
30732402 AGGAAACATCTCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
30732447 TGTTATTATC
Statistics
Matches: 162, Mismatches: 31, Indels: 3
0.83 0.16 0.02
Matches are distributed among these distances:
49 39 0.24
50 123 0.76
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (49 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACAAG
Found at i:30732328 original size:100 final size:101
Alignment explanation
Indices: 30732203--30732446 Score: 287
Period size: 100 Copynumber: 2.4 Consensus size: 101
30732193 TATTGAAATT
* * ** *
30732203 ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTTCCATG
1 ATGAAAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAACTCCCATG
* * *
30732268 TAAGACTATGTCTGGGACATGGCGTTGGCACCA-AG
66 TAAGACCATATCTGGGACATGGCATTGGCACCACAG
** * * *
30732303 ATGAAAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACTGATATGAGAACTCCCATG
1 ATGAAAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAACTCCCATG
* **
30732368 TAAGACCATATCTGGGATATGGCATTGGCAGTACAG
66 TAAGACCATATCTGGGACATGGCATTGGCACCACAG
** * *
30732404 --GAAACATCTCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 ATGAAAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
30732447 TGTTATTATC
Statistics
Matches: 120, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
99 36 0.30
100 82 0.68
101 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (101 bp):
ATGAAAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAACTCCCATG
TAAGACCATATCTGGGACATGGCATTGGCACCACAG
Found at i:30735909 original size:11 final size:11
Alignment explanation
Indices: 30735887--30735916 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
30735877 TTTGAATGTT
30735887 CATTGTATGAAA
1 CATTG-ATGAAA
30735899 CATTGATGAAA
1 CATTGATGAAA
30735910 CATTGAT
1 CATTGAT
30735917 ATATTTGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (11 bp):
CATTGATGAAA
Found at i:30739277 original size:456 final size:456
Alignment explanation
Indices: 30738424--30739310 Score: 1314
Period size: 456 Copynumber: 1.9 Consensus size: 456
30738414 GCCCACCCCG
* * *
30738424 GGAGAGGCTTAAGCTGCCATAGCCTCAAGTTTCAAAGTAGGATGAAGATAATAATGATCAAGAAA
1 GGAGAGGCTTAAGCTACCATAGCCGCAAGCTTCAAAGTAGGATGAAGATAATAATGATCAAGAAA
* * *
30738489 AAGACTACCTATTTTCTTGTCACGTTAACCTTTTATGCCCTCCTCCACAGTACAGGTGTCCTTTC
66 AAGACTACCTATTTTCTTCTCACATCAACCTTTTATGCCCTCCTCCACAGTACAGGTGTCCTTTC
* * * * ***
30738554 CACAGAATTATTTTGTCCTTGTACGTACAGGTTGGTTATACCAGACTGGACAGCTCATGTAATTT
131 CACAGAATTATTCTGACCTTGTACATACAAGTTGGTTATACCAGACTGGACAGCTCACACAATTT
* * * * *
30738619 TAGTTCTTATTCGAACAGCTGTCAGGTGCGGCGACAATTCTGGACGCAATTTGGAATTAATTCAT
196 TAGTTCTTATCCGAACAGCTGTCAGGTGCGACGACAATTCTAGACGCAATATGGAATTAACTCAT
* * *
30738684 GCAGCGACATTAATGCAAAAAGATAGTAAAATTAAGGATAAAATAGGCTAGGATTCACTGAGTTA
261 GCAACAACATTAATGCAAAAAGATAGAAAAATTAAGGATAAAATAGGCTAGGATTCACTGAGTTA
* * **
30738749 TAAAATGTAATTTAATAAACTAAAAATACTAAAATATATGCTAAGGATAACTAAATGGGAACAGT
326 TAAAATGCAATTTAATAAACTAAAAATACTAAAATATATACTAAGGATAACTAAATGGGAACAAA
30738814 TTAACCAATAAGAAAGGAGAAAAACCTATGTTATTTCTAGTGCTTAAGCTGGGAGAGGCTCACCT
391 TTAACCAATAAGAAAGGAGAAAAACCTATGTTATTTCTAGTGCTTAAGCTGGGAGAGGCTCACCT
30738879 A
456 A
*
30738880 GGAGAGGCTTAAGCTACCATAGCCGCAAGCTTC-AAGATAGGATGAAGA-AGATAATGATTAAGA
1 GGAGAGGCTTAAGCTACCATAGCCGCAAGCTTCAAAG-TAGGATGAAGATA-ATAATGATCAAGA
* * *
30738943 AAAAGACTCCCTCTTTTCTTCTCACATCAACCTTTTATGTCCTCCTCCACAGTACAGGTGTCCTT
64 AAAAGACTACCTATTTTCTTCTCACATCAACCTTTTATGCCCTCCTCCACAGTACAGGTGTCCTT
* *
30739008 TCCTCAGAATTATTCT-ACACTTGTACATACAAGTTGGTTATACCAGATTGGACAGCTCACACAA
129 TCCACAGAATTATTCTGAC-CTTGTACATACAAGTTGGTTATACCAGACTGGACAGCTCACACAA
* * * *
30739072 TTTTAGTTCTTATCCGGATAGTTGTCAGGTGCGACGACAATTTTAGACGCAATATGGAATTAACT
193 TTTTAGTTCTTATCCGAACAGCTGTCAGGTGCGACGACAATTCTAGACGCAATATGGAATTAACT
*
30739137 CATGCAATAACATTAATGCAAAAAGATAGAAAAATTAAGGATAAAATAGGCTAGGATTCACT-AG
258 CATGCAACAACATTAATGCAAAAAGATAGAAAAATTAAGGATAAAATAGGCTAGGATTCACTGA-
* * * *
30739201 GTTATAAAATGCAATTTACTAAACTGAAAATGCTAAAATATATACTATGGATAACTAAATGGGAA
322 GTTATAAAATGCAATTTAATAAACTAAAAATACTAAAATATATACTAAGGATAACTAAATGGGAA
* * * *
30739266 CAAATTAACCAATAAGTAATGAGGAAAACCTATGTTCTTTCTAGT
387 CAAATTAACCAATAAGAAAGGAGAAAAACCTATGTTATTTCTAGT
30739311 ATTATCAATA
Statistics
Matches: 383, Mismatches: 44, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
455 6 0.02
456 377 0.98
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (456 bp):
GGAGAGGCTTAAGCTACCATAGCCGCAAGCTTCAAAGTAGGATGAAGATAATAATGATCAAGAAA
AAGACTACCTATTTTCTTCTCACATCAACCTTTTATGCCCTCCTCCACAGTACAGGTGTCCTTTC
CACAGAATTATTCTGACCTTGTACATACAAGTTGGTTATACCAGACTGGACAGCTCACACAATTT
TAGTTCTTATCCGAACAGCTGTCAGGTGCGACGACAATTCTAGACGCAATATGGAATTAACTCAT
GCAACAACATTAATGCAAAAAGATAGAAAAATTAAGGATAAAATAGGCTAGGATTCACTGAGTTA
TAAAATGCAATTTAATAAACTAAAAATACTAAAATATATACTAAGGATAACTAAATGGGAACAAA
TTAACCAATAAGAAAGGAGAAAAACCTATGTTATTTCTAGTGCTTAAGCTGGGAGAGGCTCACCT
A
Found at i:30748663 original size:37 final size:37
Alignment explanation
Indices: 30748613--30748688 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
30748603 CGCCCCTTTC
30748613 CTCGGACTTGGAAGACCCAAGCTTGTATTTCCCTAGA
1 CTCGGACTTGGAAGACCCAAGCTTGTATTTCCCTAGA
30748650 CTCGGACTTGGAAGACCCAAGCTTGTATTTCCCTAGA
1 CTCGGACTTGGAAGACCCAAGCTTGTATTTCCCTAGA
30748687 CT
1 CT
30748689 AAGTTTGAGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.28
Consensus pattern (37 bp):
CTCGGACTTGGAAGACCCAAGCTTGTATTTCCCTAGA
Found at i:30750474 original size:84 final size:87
Alignment explanation
Indices: 30750360--30750530 Score: 213
Period size: 84 Copynumber: 2.0 Consensus size: 87
30750350 TGCTTTTTTT
*
30750360 CTTTTTATGCACTCAATTGAGCACTCGAACTTTCAAAATGCAT-AAAAAAGCCCTCAAA-ATTCT
1 CTTTTTATGCACTCAATTGAGCACTCGAACTTTCAAAATGCATCAAAAAAACCCTCAAATATTCT
30750423 TCAAAAAA-AATTAAGCCCCTG
66 TCAAAAAACAATTAAGCCCCTG
* * * * * * * * *
30750444 CTTTTTTTTCACTCAATTGGGTACTTGAACTTTCAAAATGTATCAAAAAAACCCTTAAATTTTTT
1 CTTTTTATGCACTCAATTGAGCACTCGAACTTTCAAAATGCATCAAAAAAACCCTCAAATATTCT
*
30750509 TCAAAAAAGCAATTAATCCCCT
66 TCAAAAAA-CAATTAAGCCCCT
30750531 ACTCTAATTA
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
84 37 0.51
85 13 0.18
86 11 0.15
88 11 0.15
ACGTcount: A:0.37, C:0.22, G:0.08, T:0.33
Consensus pattern (87 bp):
CTTTTTATGCACTCAATTGAGCACTCGAACTTTCAAAATGCATCAAAAAAACCCTCAAATATTCT
TCAAAAAACAATTAAGCCCCTG
Found at i:30750884 original size:9 final size:9
Alignment explanation
Indices: 30750866--30750943 Score: 61
Period size: 9 Copynumber: 8.4 Consensus size: 9
30750856 CTTGATAACA
30750866 TTTTATTATT
1 TTTTA-TATT
30750876 TTTTATATT
1 TTTTATATT
30750885 TTTTATGA-T
1 TTTTAT-ATT
**
30750894 TTTTATAAAA
1 TTTTAT-ATT
*
30750904 TTTTAAATTT
1 TTTTATA-TT
30750914 TTTTATATT
1 TTTTATATT
* *
30750923 TTTTACAAT
1 TTTTATATT
30750932 TTTTAT-TT
1 TTTTATATT
30750940 TTTT
1 TTTT
30750944 CTAATTTTAA
Statistics
Matches: 55, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
8 5 0.09
9 33 0.60
10 17 0.31
ACGTcount: A:0.26, C:0.01, G:0.01, T:0.72
Consensus pattern (9 bp):
TTTTATATT
Found at i:30750907 original size:28 final size:28
Alignment explanation
Indices: 30750876--30750969 Score: 95
Period size: 28 Copynumber: 3.4 Consensus size: 28
30750866 TTTTATTATT
30750876 TTTTATA-TTTTTTATGATTTTTATAAAA
1 TTTTATATTTTTTTAT-ATTTTTATAAAA
* *
30750904 TTTTAAATTTTTTTATATTTTT-TACAA
1 TTTTATATTTTTTTATATTTTTATAAAA
* * *
30750931 TTTT-TATTTTTTTCTAATTTTAATAAAT
1 TTTTATATTTTTTTAT-ATTTTTATAAAA
30750959 TTTTAATATTT
1 TTTT-ATATTT
30750970 GAATTTTTAT
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
26 9 0.17
27 13 0.24
28 19 0.35
29 8 0.15
30 5 0.09
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.67
Consensus pattern (28 bp):
TTTTATATTTTTTTATATTTTTATAAAA
Found at i:30750924 original size:27 final size:28
Alignment explanation
Indices: 30750883--30750969 Score: 79
Period size: 27 Copynumber: 3.1 Consensus size: 28
30750873 ATTTTTTATA
*
30750883 TTTTTTATGATTTTTATAAAATTTTAAAT
1 TTTTTTAT-AATTTTATAAAATTTTAAAT
* * *
30750912 TTTTTTAT-ATTTTTTACAATTTT-TAT
1 TTTTTTATAATTTTATAAAATTTTAAAT
* *
30750938 TTTTTTCTAATTTTAATAAATTTTTAATAT
1 TTTTTTATAATTTT-ATAAAATTTTAA-AT
30750968 TT
1 TT
30750970 GAATTTTTAT
Statistics
Matches: 45, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
26 9 0.20
27 17 0.38
28 7 0.16
29 8 0.18
30 4 0.09
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.67
Consensus pattern (28 bp):
TTTTTTATAATTTTATAAAATTTTAAAT
Found at i:30750934 original size:17 final size:18
Alignment explanation
Indices: 30750914--30750952 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
30750904 TTTTAAATTT
30750914 TTTTATATTTTTTAC-AA
1 TTTTATATTTTTTACTAA
*
30750931 TTTT-TATTTTTTTCTAA
1 TTTTATATTTTTTACTAA
30750948 TTTTA
1 TTTTA
30750953 ATAAATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTATATTTTTTACTAA
Found at i:30750987 original size:54 final size:56
Alignment explanation
Indices: 30750875--30750987 Score: 124
Period size: 54 Copynumber: 2.1 Consensus size: 56
30750865 ATTTTATTAT
* * * ** *
30750875 TTTTTATATTTTTTATGATTTTTATAAAATTTTAAATTTTTTTATATTTTTTACAA
1 TTTTTATATTTTTTATAATTTTAATAAAATTTTAAATATTTGAATATTTTTTAAAA
* *
30750931 TTTTTAT-TTTTTTCTAATTTTAAT-AAATTTTTAATATTTGAAT-TTTTATTAAAA
1 TTTTTATATTTTTTATAATTTTAATAAAATTTTAAATATTTGAATATTTT-TTAAAA
30750985 TTT
1 TTT
30750988 AATAATATTA
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
53 4 0.08
54 23 0.48
55 14 0.29
56 7 0.15
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (56 bp):
TTTTTATATTTTTTATAATTTTAATAAAATTTTAAATATTTGAATATTTTTTAAAA
Found at i:30751037 original size:9 final size:9
Alignment explanation
Indices: 30751012--30751041 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
30751002 CTTTAATTGA
30751012 TTTTAATTT
1 TTTTAATTT
30751021 TTTATAATTT
1 TTT-TAATTT
30751031 TTTTAATTT
1 TTTTAATTT
30751040 TT
1 TT
30751042 AATAAAAGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTTAATTT
Found at i:30751157 original size:88 final size:88
Alignment explanation
Indices: 30751054--30751365 Score: 313
Period size: 95 Copynumber: 3.5 Consensus size: 88
30751044 TAAAAGCATG
* * ** * *
30751054 GGCTTCATTGATTTTTTTGAAAAAGTTCAAGGGCCTTTTTGATGCATTTTGAAAGTTCAAATACT
1 GGCTTAATTGCTTTTTTTGAAAAAGTTTGAGGGCCTTTTTGATGCATTTTGAAAGTTCAAGTACC
*
30751119 CAATTGAGTGCAAAAAAAAAGTA
66 CAAATGAGTGCAAAAAAAAAGTA
* * * * * * *
30751142 GGTTTAGTTGTTTTTTTTTTTTTTTGAAAAGGTTTGAGGGCCTTTTTGAAGTATTTTGAAAGGTC
1 GGCTTAATTG-------CTTTTTTTGAAAAAGTTTGAGGGCCTTTTTGATGCATTTTGAAAGTTC
* *
30751207 AAGTACCCAAATGAGTGCAAAAACAAAGCA
59 AAGTACCCAAATGAGTGCAAAAAAAAAGTA
* * * *
30751237 GGCTTAATTACTTTTTTTGAAAAGGTTTGAGGGCGTTTTTGATACATTTTGAAAGTTCAAGTACC
1 GGCTTAATTGCTTTTTTTGAAAAAGTTTGAGGGCCTTTTTGATGCATTTTGAAAGTTCAAGTACC
* *
30751302 CAAATGAGTG-TAAAAACAAGTA
66 CAAATGAGTGCAAAAAAAAAGTA
* *
30751324 GGGGCTTAATTGCTTTGTTTGAAAAAGTTTTAGGG-CTTTTTG
1 --GGCTTAATTGCTTTTTTTGAAAAAGTTTGAGGGCCTTTTTG
30751366 CACCCTTAAG
Statistics
Matches: 182, Mismatches: 33, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
87 8 0.04
88 72 0.40
89 29 0.16
95 73 0.40
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (88 bp):
GGCTTAATTGCTTTTTTTGAAAAAGTTTGAGGGCCTTTTTGATGCATTTTGAAAGTTCAAGTACC
CAAATGAGTGCAAAAAAAAAGTA
Found at i:30751252 original size:95 final size:88
Alignment explanation
Indices: 30751160--30751365 Score: 283
Period size: 88 Copynumber: 2.3 Consensus size: 88
30751150 TGTTTTTTTT
* *
30751160 TTTTTTTGAAAAGGTTTGAGGGCCTTTTTGAAGTATTTTGAAAGGTCAAGTACCCAAATGAGTGC
1 TTTTTTTGAAAAGGTTTGAGGGCCTTTTTGAAGCATTTTGAAAGTTCAAGTACCCAAATGAGTGC
30751225 AAAAACAAAGCAGGCTTAATTAC
66 AAAAACAAAGCAGGCTTAATTAC
*
30751248 TTTTTTTGAAAAGGTTTGAGGGCGTTTTTGATA-CATTTTGAAAGTTCAAGTACCCAAATGAGTG
1 TTTTTTTGAAAAGGTTTGAGGGCCTTTTTGA-AGCATTTTGAAAGTTCAAGTACCCAAATGAGTG
* * *
30751312 TAAAAACAAGTAG-GGGCTTAATTGC
65 CAAAAACAA--AGCAGGCTTAATTAC
* * *
30751337 TTTGTTTGAAAAAGTTTTAGGG-CTTTTTG
1 TTTTTTTGAAAAGGTTTGAGGGCCTTTTTG
30751366 CACCCTTAAG
Statistics
Matches: 105, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
88 73 0.70
89 30 0.29
90 2 0.02
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (88 bp):
TTTTTTTGAAAAGGTTTGAGGGCCTTTTTGAAGCATTTTGAAAGTTCAAGTACCCAAATGAGTGC
AAAAACAAAGCAGGCTTAATTAC
Found at i:30754558 original size:38 final size:38
Alignment explanation
Indices: 30754507--30754595 Score: 133
Period size: 38 Copynumber: 2.3 Consensus size: 38
30754497 AAACTTACTA
* * *
30754507 TTATTTAGGCTTAGTGCCTAGCAGGCTTAGTGCTGGTG
1 TTATTCAGGCTTAGTGCCTAGCAGGCTCAGTGCCGGTG
*
30754545 TTATTCAGGCTTAGTGCCTAGTAGGCTCAGTGCCGGTG
1 TTATTCAGGCTTAGTGCCTAGCAGGCTCAGTGCCGGTG
*
30754583 TTATTCAGACTTA
1 TTATTCAGGCTTA
30754596 TTGTCAGTGA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 46 1.00
ACGTcount: A:0.18, C:0.18, G:0.28, T:0.36
Consensus pattern (38 bp):
TTATTCAGGCTTAGTGCCTAGCAGGCTCAGTGCCGGTG
Found at i:30772615 original size:449 final size:448
Alignment explanation
Indices: 30771768--30772615 Score: 1527
Period size: 449 Copynumber: 1.9 Consensus size: 448
30771758 TTACTGTTTC
* *
30771768 ATTAGGTTTATTTTTTTAAAGCTTTATTTGGGGTATTTTTCTGTAATAATGGCCGCTATGAGTTT
1 ATTAGGTTTATTTTTTTAAAGCTTTATTTGGGGTATTTTTCTGTAATAATGACCACTATGAGTTT
30771833 TTGCTTAAAATTTGGATTTTATACTGCTTTATGTTTTATATCTACTAGAGGTAGATAAAACACGG
66 TTGCTTAAAATTTGGATTTTATACTGCTTTATGTTTTATATCTACTAGAGGTAGATAAAACACGG
* *
30771898 GTTTTAAAGGAAATGCATGTGTTTTAGCAAAATACCCACAAGAACACAAACTGTTTTAAAAAGCT
131 GTTTTAAAAGAAATGCATGTGTTTTAGCAAAATACCCACAAGAACACAAACTATTTTAAAAAGCT
*
30771963 TCCGCAATGTATAACATTTTGCAAACTAACGACTGAATAAAAATCACTATTTTAGGATTAATAAA
196 TCCGCAACGTATAACATTTTGCAAACTAACGACTGAATAAAAATCACTATTTTAGGATTAATAAA
* *
30772028 AGATAATGACGAGATCTAAACGAAAAATGTTTTAAGCAAAGTTACGATTTTTCAACACGAGCATC
261 AGATAACGACGAGATCTAAACGAAAAATGTTTTAAGCAAAGTTACGATTTTTCAACAAGAGCATC
*
30772093 AGTTTTCAAACACACTATCATGTGACATCGCCAAATTCGGCCATAACGTCCAGGCCGGTTTTGCG
326 AGTTTTCAAACACACTATCATGTGACATCGCCAAATTCGGCCATAACGTCCAGGCCGGGTTTGCG
30772158 GTGTTACATGGAGGACTCAACTGTGGCCACACGACTCTTTTTTTCTGTTTCGTATTTA
391 GTGTTACATGGAGGACTCAACTGTGGCCACACGACTCTTTTTTTCTGTTTCGTATTTA
30772216 ATTAGGTTTA-TTTTTTAAAGCTTTATTTGGGGTATTTTTCTGTAATAATGACCACTATGAGTTT
1 ATTAGGTTTATTTTTTTAAAGCTTTATTTGGGGTATTTTTCTGTAATAATGACCACTATGAGTTT
* * *
30772280 TTGCTTAAAATTTTGATTTTATACTGCTTTATGTTTTATATCTGCTTGAGGTAGATAAAACACGA
66 TTGCTTAAAATTTGGATTTTATACTGCTTTATGTTTTATATCTACTAGAGGTAGATAAAACACG-
30772345 GGTTTGTAAAAGAAATGCATGTGTTTTAGCAAAATACCCACAAGAACACAAACTATTTTAAAAAG
130 GGTTT-TAAAAGAAATGCATGTGTTTTAGCAAAATACCCACAAGAACACAAACTATTTTAAAAAG
* *
30772410 CTTTCGCAACGTATAACATTTTGCAAACTAACTACTGAATAAAAATCACTATTTTAGGATTAATA
194 CTTCCGCAACGTATAACATTTTGCAAACTAACGACTGAATAAAAATCACTATTTTAGGATTAATA
*
30772475 AAAGATAACGACGAGATCTAAACGAAAAATGTTTTAAGCAAAGTTACGGTTTTTCAACAAGAGCA
259 AAAGATAACGACGAGATCTAAACGAAAAATGTTTTAAGCAAAGTTACGATTTTTCAACAAGAGCA
*
30772540 TCAGTTTTCAAACACACTATCATGTGACATCGTCAAATTCGGCCATAACGTCCAGGCCGGGTTTG
324 TCAGTTTTCAAACACACTATCATGTGACATCGCCAAATTCGGCCATAACGTCCAGGCCGGGTTTG
*
30772605 GGGTGTTACAT
389 CGGTGTTACAT
30772616 ATGGACTCAG
Statistics
Matches: 382, Mismatches: 16, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
447 113 0.30
448 15 0.04
449 254 0.66
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.34
Consensus pattern (448 bp):
ATTAGGTTTATTTTTTTAAAGCTTTATTTGGGGTATTTTTCTGTAATAATGACCACTATGAGTTT
TTGCTTAAAATTTGGATTTTATACTGCTTTATGTTTTATATCTACTAGAGGTAGATAAAACACGG
GTTTTAAAAGAAATGCATGTGTTTTAGCAAAATACCCACAAGAACACAAACTATTTTAAAAAGCT
TCCGCAACGTATAACATTTTGCAAACTAACGACTGAATAAAAATCACTATTTTAGGATTAATAAA
AGATAACGACGAGATCTAAACGAAAAATGTTTTAAGCAAAGTTACGATTTTTCAACAAGAGCATC
AGTTTTCAAACACACTATCATGTGACATCGCCAAATTCGGCCATAACGTCCAGGCCGGGTTTGCG
GTGTTACATGGAGGACTCAACTGTGGCCACACGACTCTTTTTTTCTGTTTCGTATTTA
Found at i:30778024 original size:16 final size:16
Alignment explanation
Indices: 30778003--30778034 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
30777993 GTTTTGTTGC
*
30778003 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
30778019 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
30778035 CTATCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:30780972 original size:42 final size:42
Alignment explanation
Indices: 30780892--30780973 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
30780882 CATTTTCTCT
* * **
30780892 ATGCCATAGTCCAACTATGGTCTTATACATATTTACATATTG
1 ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
*
30780934 ATGCCATAGCCCAGCTATGGTCTTACACAGTA-GCACATAT
1 ATGCCATAGCCCAACTATGGTCTTACACA-TATGCACATAT
30780974 CACACCGATG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 32 0.94
43 2 0.06
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
Found at i:30781034 original size:47 final size:47
Alignment explanation
Indices: 30780933--30781025 Score: 123
Period size: 47 Copynumber: 2.0 Consensus size: 47
30780923 TTTACATATT
* *
30780933 GATGCCATAGCCCAGCTATGGTCTTACACAGTAGCACATATCACACC
1 GATGCCATAGCCCAGATATGGTCTTACACAGAAGCACATATCACACC
* * * *
30780980 GATGCCATATCCCAGATATGGTCTTATACGGAAATCACATATCACA
1 GATGCCATAGCCCAGATATGGTCTTACACAG-AAGCACATATCACA
30781026 TGTTGCCATG
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
47 27 0.69
48 12 0.31
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (47 bp):
GATGCCATAGCCCAGATATGGTCTTACACAGAAGCACATATCACACC
Found at i:30783782 original size:16 final size:16
Alignment explanation
Indices: 30783761--30783792 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
30783751 GTTTTGTTGC
*
30783761 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
30783777 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
30783793 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:30784137 original size:43 final size:43
Alignment explanation
Indices: 30784089--30784331 Score: 224
Period size: 43 Copynumber: 5.7 Consensus size: 43
30784079 GTTTTTAGAA
*
30784089 ACAAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCATTTCCC
1 ACAAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTTCCC
* *
30784132 ACAAACGCCGCTAAAG-ACTAAGACCTGTAGCGGCGCTTTTCCT
1 ACAAACGCCGCTAAAGAAC-AAGACCTTTAGCGGCGCTTTTCCC
* * * * * * *
30784175 ACAGATGCCGCTAAAGACCATGACCTATAGCGACGTTTTTCCC
1 ACAAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTTCCC
* * * **
30784218 ACAAACGCCGCTAAAGACCATGACCTTTAGTGGCGCTTTTTGTC
1 ACAAACGCCGCTAAAGAACAAGACCTTTAGCGGCGC-TTTTCCC
* ** * * * *
30784262 ACAAACGCCGCTATAGATTAA-ACCTTTTGCGGCACTTCTCAC
1 ACAAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTTCCC
*
30784304 AAAAACGCCGCTAAA-AACATA-ACCTTTA
1 ACAAACGCCGCTAAAGAACA-AGACCTTTA
30784332 AAAAAATTAT
Statistics
Matches: 162, Mismatches: 34, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
41 2 0.01
42 26 0.16
43 111 0.69
44 23 0.14
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (43 bp):
ACAAACGCCGCTAAAGAACAAGACCTTTAGCGGCGCTTTTCCC
Found at i:30785530 original size:5 final size:5
Alignment explanation
Indices: 30785520--30785546 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
30785510 CTTTCTTGCC
30785520 AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AA
30785547 AACAAGAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:30786131 original size:14 final size:14
Alignment explanation
Indices: 30786112--30786138 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
30786102 ATCAAGAAAA
30786112 AAATTATGTATAAT
1 AAATTATGTATAAT
30786126 AAATTATGTATAA
1 AAATTATGTATAA
30786139 GACTTACATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (14 bp):
AAATTATGTATAAT
Found at i:30788735 original size:27 final size:27
Alignment explanation
Indices: 30788678--30788735 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 27
30788668 ACCCTAACCC
* *
30788678 TTAAACCTTAAACTCCATATATATTAT
1 TTAAACCTTAAACTCCATATATATGAA
30788705 TTAAACCTTAAACTCCATAT-TAATGAA
1 TTAAACCTTAAACTCCATATAT-ATGAA
30788732 TTAA
1 TTAA
30788736 TTGATTGTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 1 0.04
27 27 0.96
ACGTcount: A:0.43, C:0.17, G:0.02, T:0.38
Consensus pattern (27 bp):
TTAAACCTTAAACTCCATATATATGAA
Found at i:30789012 original size:21 final size:21
Alignment explanation
Indices: 30788988--30789029 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
30788978 ATAAAACATA
30788988 AACCCTAAAC-CACTAACCCCT
1 AACCCTAAACTC-CTAACCCCT
*
30789009 AACCCTTAACTCCTAACCCCT
1 AACCCTAAACTCCTAACCCCT
30789030 CTTTTACAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.33, C:0.48, G:0.00, T:0.19
Consensus pattern (21 bp):
AACCCTAAACTCCTAACCCCT
Found at i:30789159 original size:14 final size:14
Alignment explanation
Indices: 30789142--30789179 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
30789132 CACTAACTCT
*
30789142 TAACCTCTAACCT-C
1 TAACCCCTAA-CTAC
30789156 TAACCCCTAACTAC
1 TAACCCCTAACTAC
30789170 TAACCCCTAA
1 TAACCCCTAA
30789180 ACTTTATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 2 0.09
14 20 0.91
ACGTcount: A:0.34, C:0.42, G:0.00, T:0.24
Consensus pattern (14 bp):
TAACCCCTAACTAC
Found at i:30789219 original size:132 final size:132
Alignment explanation
Indices: 30789055--30789298 Score: 364
Period size: 132 Copynumber: 1.8 Consensus size: 132
30789045 AAGAACTTAA
* ** * * *
30789055 TTAATATATAAATTAAAAAATACTAATTAATCTAAACTTTAAACCCTAACCCGACCCCGAATCTC
1 TTAATATATAAATTAAAAAACACTAATTAATCTAAACCCTAAACCCTAACCCGACACCAAATCTA
*
30789120 TAAATCCTAAATCACTAACTCTTAACCTCTAA-CCTCTAACCCCTAACTACTAACCCCTAAACTT
66 TAAACCCTAAATCACTAACTCTTAACCTCTAACCCT-TAACCCCTAACTACTAACCCCTAAACTT
30789184 TAT
130 TAT
* *
30789187 TTAATATATAAATTAAAAAACACTAATTAATCTAAACCCTAAACCCTAACCTGACACTAAATCTA
1 TTAATATATAAATTAAAAAACACTAATTAATCTAAACCCTAAACCCTAACCCGACACCAAATCTA
* * *
30789252 TAAACCCTAAATCTCTAACTCTTAATCTCTAACCCTTAACTCCTAAC
66 TAAACCCTAAATCACTAACTCTTAACCTCTAACCCTTAACCCCTAAC
30789299 CCCTAAATCA
Statistics
Matches: 99, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
132 96 0.97
133 3 0.03
ACGTcount: A:0.41, C:0.28, G:0.01, T:0.30
Consensus pattern (132 bp):
TTAATATATAAATTAAAAAACACTAATTAATCTAAACCCTAAACCCTAACCCGACACCAAATCTA
TAAACCCTAAATCACTAACTCTTAACCTCTAACCCTTAACCCCTAACTACTAACCCCTAAACTTT
AT
Found at i:30789280 original size:14 final size:14
Alignment explanation
Indices: 30789254--30789318 Score: 62
Period size: 14 Copynumber: 4.6 Consensus size: 14
30789244 TAAATCTATA
*
30789254 AACCCTAAATCTCT
1 AACCCTTAATCTCT
*
30789268 AACTCTTAATCTCT
1 AACCCTTAATCTCT
30789282 AACCCTTAA-CTCCT
1 AACCCTTAATCT-CT
* *
30789296 AACCCCTAAATCAC-
1 AA-CCCTTAATCTCT
30789310 AACCCTTAA
1 AACCCTTAA
30789319 ACCAGAATCC
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
13 8 0.19
14 26 0.62
15 7 0.17
16 1 0.02
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (14 bp):
AACCCTTAATCTCT
Found at i:30789343 original size:14 final size:15
Alignment explanation
Indices: 30789324--30789356 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
30789314 CTTAAACCAG
30789324 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
30789338 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
30789353 AATC
1 AATC
30789357 TATAAACCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:30789926 original size:26 final size:26
Alignment explanation
Indices: 30789847--30789928 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
30789837 AGCTATCCGG
*
30789847 TACACATAGTAGCTTGCACATAGTAC
1 TACACATAGTAGCCTGCACATAGTAC
* * ** *
30789873 CACACAT-G-CGACCT--ATCATTTTAG
1 TACACATAGTAG-CCTGCA-CATAGTAC
30789897 TACACATAGTAGCCTGCACATAGTAC
1 TACACATAGTAGCCTGCACATAGTAC
30789923 TACACA
1 TACACA
30789929 CGTGACCATC
Statistics
Matches: 39, Mismatches: 11, Indels: 12
0.63 0.18 0.19
Matches are distributed among these distances:
23 1 0.03
24 12 0.31
25 7 0.18
26 18 0.46
27 1 0.03
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.26
Consensus pattern (26 bp):
TACACATAGTAGCCTGCACATAGTAC
Found at i:30790186 original size:16 final size:16
Alignment explanation
Indices: 30790161--30790191 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
30790151 TCCAGTCCAA
30790161 AAAATCACATTTTTGT
1 AAAATCACATTTTTGT
*
30790177 AAAATTACATTTTTG
1 AAAATCACATTTTTG
30790192 CCCCTAAAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.10, G:0.06, T:0.45
Consensus pattern (16 bp):
AAAATCACATTTTTGT
Found at i:30792985 original size:15 final size:15
Alignment explanation
Indices: 30792967--30792999 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
30792957 TGCTTCCATA
30792967 ATTGATTACATCATC
1 ATTGATTACATCATC
*
30792982 ATTGCTTACATCATC
1 ATTGATTACATCATC
30792997 ATT
1 ATT
30793000 AGTCTGATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.30, C:0.21, G:0.06, T:0.42
Consensus pattern (15 bp):
ATTGATTACATCATC
Found at i:30795185 original size:17 final size:17
Alignment explanation
Indices: 30795153--30795184 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
30795143 CAATTGGAGG
30795153 TTTTTGTTTCTCTTTTC
1 TTTTTGTTTCTCTTTTC
30795170 TTTTTGTTT-TCTTTT
1 TTTTTGTTTCTCTTTT
30795185 TGGGCCTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.00, C:0.12, G:0.06, T:0.81
Consensus pattern (17 bp):
TTTTTGTTTCTCTTTTC
Found at i:30795804 original size:150 final size:148
Alignment explanation
Indices: 30795472--30795920 Score: 678
Period size: 150 Copynumber: 3.1 Consensus size: 148
30795462 AGGAAAATTT
*
30795472 TGATTTTTTTTAAAAAAAAGAAAGTTTAGATTTTTAAAAATAAAAATATGTTTTTTAGTCATTTT
1 TGATTTTTTTTAAAAAAAAGAGAGTTTAGATTTTTAAAAATAAAAATATG-TTTTTAGTCATTTT
* * *
30795537 AAAGGAAAATTTTAAAATTTTAAAGCAAAGTTTTGATCTTTTTGAACTATTTCGAAATAAAGGTT
65 AAAGGAAAATTTTAAAATTTTAAAACAAAGTTTTGATCTTTTTCAACTATTTCGAAATAAAGCTT
30795602 TGATTTTTAAGAAAAATA-
130 TGATTTTTAAGAAAAATAG
* *
30795620 -GA----TATTAAAAAAAA-AGAGTTTAGATTTTTAAAAATAAAAATATGTTTTTAGTCCTTTTA
1 TGATTTTTTTTAAAAAAAAGAGAGTTTAGATTTTTAAAAATAAAAATATGTTTTTAGTCATTTTA
*
30795679 AAGGAAAATTTTAAAATTTTAAAACAAAGTTTTGATCTTTTTCAACTATTTTGAAATAAAGCTTT
66 AAGGAAAATTTTAAAATTTTAAAACAAAGTTTTGATCTTTTTCAACTATTTCGAAATAAAGCTTT
30795744 GATTTTTAAGAAAAATAG
131 GATTTTTAAGAAAAATAG
30795762 TGATTTTTTTTAAAAAAAAAAGAGAGTTTAGATTTTTAAAAATAAAAATATGTTTTTAGTCATTT
1 TGATTTTTTTT--AAAAAAAAGAGAGTTTAGATTTTTAAAAATAAAAATATGTTTTTAGTCATTT
* * * * *
30795827 TAAAGGAAAAGTTTAAATTTTTAAAATAAAATTCTGATCTTTTTCAACTATTTCGAAATAAAGCT
64 TAAAGGAAAATTTTAAAATTTTAAAACAAAGTTTTGATCTTTTTCAACTATTTCGAAATAAAGCT
* * **
30795892 TTAAATTTTAAGAAATGTAG
129 TTGATTTTTAAGAAAAATAG
30795912 TGATTTTTT
1 TGATTTTTT
30795921 AAAAAGAAAA
Statistics
Matches: 273, Mismatches: 19, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
141 92 0.34
142 29 0.11
143 13 0.05
147 5 0.02
149 8 0.03
150 126 0.46
ACGTcount: A:0.43, C:0.04, G:0.11, T:0.42
Consensus pattern (148 bp):
TGATTTTTTTTAAAAAAAAGAGAGTTTAGATTTTTAAAAATAAAAATATGTTTTTAGTCATTTTA
AAGGAAAATTTTAAAATTTTAAAACAAAGTTTTGATCTTTTTCAACTATTTCGAAATAAAGCTTT
GATTTTTAAGAAAAATAG
Found at i:30811976 original size:23 final size:23
Alignment explanation
Indices: 30811950--30811995 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
30811940 GACTTAATTG
*
30811950 CATAAAATGAAATGGTTTTACTA
1 CATAAAAGGAAATGGTTTTACTA
30811973 CATAAAAGGAAATGGTTTTACTA
1 CATAAAAGGAAATGGTTTTACTA
30811996 TCTTAGTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.43, C:0.09, G:0.15, T:0.33
Consensus pattern (23 bp):
CATAAAAGGAAATGGTTTTACTA
Found at i:30813250 original size:20 final size:20
Alignment explanation
Indices: 30813202--30813253 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
30813192 AAGCTTATGC
*
30813202 TAAGTAAAAGGAATGGAAAG
1 TAAGTAAATGGAATGGAAAG
*
30813222 TAAGTAAATGGAATGGTAAG
1 TAAGTAAATGGAATGGAAAG
30813242 TAAGTAAATGGA
1 TAAGTAAATGGA
30813254 GTGATTCATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.29, T:0.21
Consensus pattern (20 bp):
TAAGTAAATGGAATGGAAAG
Found at i:30817711 original size:33 final size:33
Alignment explanation
Indices: 30817649--30817711 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
30817639 AAAAAATAAC
* * *
30817649 TTTCTTTTTCTCTTTTCTTCTTCTTCTTCTATA
1 TTTCTTTTTCCCTTTTCATCTTCTACTTCTATA
30817682 TTTCTTTTTCCCTTTTCAATC-TCTACTTCT
1 TTTCTTTTTCCCTTTTC-ATCTTCTACTTCT
30817712 TTTCCCTAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 24 0.92
34 2 0.08
ACGTcount: A:0.08, C:0.27, G:0.00, T:0.65
Consensus pattern (33 bp):
TTTCTTTTTCCCTTTTCATCTTCTACTTCTATA
Found at i:30818822 original size:20 final size:20
Alignment explanation
Indices: 30818799--30818859 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
30818789 CACATTATTG
* *
30818799 GCAGCTTGTTTGCATTACTA
1 GCAGTTTGTTTGCAATACTA
* *
30818819 GCAGTTTATCTGCAATACTA
1 GCAGTTTGTTTGCAATACTA
*
30818839 GCAGTTTGTTTGCACTACTA
1 GCAGTTTGTTTGCAATACTA
30818859 G
1 G
30818860 TGGCTTGTCC
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.38
Consensus pattern (20 bp):
GCAGTTTGTTTGCAATACTA
Found at i:30831109 original size:42 final size:43
Alignment explanation
Indices: 30831061--30831149 Score: 162
Period size: 42 Copynumber: 2.1 Consensus size: 43
30831051 AAAATCACCA
*
30831061 TAAATTGTGGAAATCGAATTAGAGGATG-AAAAAATATGGAAT
1 TAAATTGTGGAAATCAAATTAGAGGATGAAAAAAATATGGAAT
30831103 TAAATTGTGGAAATCAAATTAGAGGATGAAAAAAATATGGAAT
1 TAAATTGTGGAAATCAAATTAGAGGATGAAAAAAATATGGAAT
30831146 TAAA
1 TAAA
30831150 GCTTATTAAG
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
42 27 0.60
43 18 0.40
ACGTcount: A:0.51, C:0.02, G:0.21, T:0.26
Consensus pattern (43 bp):
TAAATTGTGGAAATCAAATTAGAGGATGAAAAAAATATGGAAT
Found at i:30835109 original size:24 final size:23
Alignment explanation
Indices: 30835051--30835098 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
30835041 ACGCTCCTCC
* *
30835051 TCTTCTCTATTTTTTTTCTCTTT
1 TCTTCTTTCTTTTTTTTCTCTTT
*
30835074 TCTTCTTTCTTTTGTTT-TCTTT
1 TCTTCTTTCTTTTTTTTCTCTTT
30835096 TCT
1 TCT
30835099 CCTTCTTCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.02, C:0.21, G:0.02, T:0.75
Consensus pattern (23 bp):
TCTTCTTTCTTTTTTTTCTCTTT
Found at i:30842532 original size:27 final size:27
Alignment explanation
Indices: 30842472--30842619 Score: 154
Period size: 27 Copynumber: 5.5 Consensus size: 27
30842462 AGACCCCAAA
* ** *
30842472 ATAGGGTAAAATGA-TGAAATACATCT
1 ATAGGGTAAAATGACCGAAATACCCCC
* * *
30842498 ATAAGGTAAAATGATCGATATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
*
30842525 ATAGGGTAAACTGACCGAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* * *
30842552 ATAAGGTAAAATAACCAAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCCCC
* **
30842579 ATAGGGTAAAATGACCAAAATACCTTC
1 ATAGGGTAAAATGACCGAAATACCCCC
*
30842606 ATGGGGTAAAATGA
1 ATAGGGTAAAATGA
30842620 TTATTATACC
Statistics
Matches: 102, Mismatches: 19, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
26 13 0.13
27 89 0.87
ACGTcount: A:0.44, C:0.19, G:0.17, T:0.20
Consensus pattern (27 bp):
ATAGGGTAAAATGACCGAAATACCCCC
Found at i:30842556 original size:54 final size:54
Alignment explanation
Indices: 30842472--30842620 Score: 174
Period size: 54 Copynumber: 2.8 Consensus size: 54
30842462 AGACCCCAAA
* * * * *
30842472 ATAGGGTAAAATGA-TGAAATACATCTATAAGGTAAAATGATCGATATACCCCC
1 ATAGGGTAAAATGACCGAAATACCTCCATAAGGTAAAATGATCAAAATACCCCC
* * * *
30842525 ATAGGGTAAACTGACCGAAATACCCCCATAAGGTAAAATAACCAAAATACCCCC
1 ATAGGGTAAAATGACCGAAATACCTCCATAAGGTAAAATGATCAAAATACCCCC
* * **
30842579 ATAGGGTAAAATGACCAAAATACCTTCATGGGGTAAAATGAT
1 ATAGGGTAAAATGACCGAAATACCTCCATAAGGTAAAATGAT
30842621 TATTATACCC
Statistics
Matches: 78, Mismatches: 17, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
53 13 0.17
54 65 0.83
ACGTcount: A:0.44, C:0.19, G:0.17, T:0.21
Consensus pattern (54 bp):
ATAGGGTAAAATGACCGAAATACCTCCATAAGGTAAAATGATCAAAATACCCCC
Found at i:30846992 original size:50 final size:50
Alignment explanation
Indices: 30846883--30847061 Score: 159
Period size: 50 Copynumber: 3.6 Consensus size: 50
30846873 ACATGCCAAA
* ** * * * *
30846883 GCCATGTCCCAGACATAGTCTTACATGGGATGTTTCCTGTAC--TGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-CGGTGCCCAT
* * * * **
30846932 GCCATATCCCAAATATGGTCTTACTTGGGAGTTCTCATATCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCCAT
** *
30846982 GCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAACAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCC--CAT
30847034 --CATGTCCCAGACATGGTCTTACATGGGA
1 GCCATGTCCCAGACATGGTCTTACATGGGA
30847062 TCTCATTCTC
Statistics
Matches: 105, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
48 1 0.01
49 30 0.29
50 71 0.68
52 3 0.03
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCCAT
Found at i:30854409 original size:27 final size:27
Alignment explanation
Indices: 30854374--30854659 Score: 301
Period size: 27 Copynumber: 10.6 Consensus size: 27
30854364 AACAAAATGA
*
30854374 CTTTGTGGCGAATCATGAAAGAAAAGC
1 CTTTATGGCGAATCATGAAAGAAAAGC
*
30854401 CTTTATGGCGAATCATGAAA-AAAATC
1 CTTTATGGCGAATCATGAAAGAAAAGC
* **
30854427 CTTTATGGCAAATCATGAAAGAAAAAT
1 CTTTATGGCGAATCATGAAAGAAAAGC
* *
30854454 CTTTCTGGAGAATCATGAAAGAAAAGC
1 CTTTATGGCGAATCATGAAAGAAAAGC
* * *
30854481 TTTTAT-GCTGAAT-TTGGAAAGAAAAAC
1 CTTTATGGC-GAATCAT-GAAAGAAAAGC
* *
30854508 CTTTGTGGCGAATCCTGAAAGAAAAGC
1 CTTTATGGCGAATCATGAAAGAAAAGC
* * *
30854535 ATTTGTGGCGAATCATAAAAGAAAAGC
1 CTTTATGGCGAATCATGAAAGAAAAGC
* * *
30854562 CTTTGTGGCGAATCATGAAATAAAAGT
1 CTTTATGGCGAATCATGAAAGAAAAGC
*
30854589 CTTTATGGCGAATAATGAAAGAAAAGC
1 CTTTATGGCGAATCATGAAAGAAAAGC
* * * *
30854616 CTTTGTGGTGAATTATGAAAGAAAGGTC
1 CTTTATGGCGAATCATGAAAGAAAAG-C
*
30854644 C-TTATGACGAATCATG
1 CTTTATGGCGAATCATG
30854660 GAGTAAGTTA
Statistics
Matches: 215, Mismatches: 38, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
26 26 0.12
27 184 0.86
28 5 0.02
ACGTcount: A:0.40, C:0.13, G:0.22, T:0.26
Consensus pattern (27 bp):
CTTTATGGCGAATCATGAAAGAAAAGC
Found at i:30863111 original size:20 final size:19
Alignment explanation
Indices: 30863082--30863119 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
30863072 AAGTAGTGAT
30863082 AATTTATTTTCTAAGAATA
1 AATTTATTTTCTAAGAATA
*
30863101 AATTATATTTTCTAGGAAT
1 AATT-TATTTTCTAAGAAT
30863120 TACAATTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.47
Consensus pattern (19 bp):
AATTTATTTTCTAAGAATA
Found at i:30879501 original size:101 final size:101
Alignment explanation
Indices: 30879371--30879555 Score: 266
Period size: 101 Copynumber: 1.8 Consensus size: 101
30879361 AAAGTGATGG
* * **
30879371 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTAACGGAAT-G-ATAGGTCGTATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGACTACTACGTGTAACAG-ATGGAATA-GTCACATGTGTAGT
30879434 ACTATGTGCAGGCTATTATGCGTACTAGATAGTTTCGA
64 ACTATGTGCAGGCTATTATGCGTACTAGATAGTTTCGA
* *
30879472 TCACGTGTGTAGTACTATGTGTAGACTACTACGTGTATCAGATGGTAATAGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGACTACTACGTGTAACAGATGG-AATAGTCACATGTGTAGTA
*
30879537 TTATGTGCAGGCTATTATG
65 CTATGTGCAGGCTATTATG
30879556 TGAACCGAAC
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
100 2 0.03
101 38 0.51
102 31 0.42
103 3 0.04
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.34
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGCAGACTACTACGTGTAACAGATGGAATAGTCACATGTGTAGTAC
TATGTGCAGGCTATTATGCGTACTAGATAGTTTCGA
Found at i:30886131 original size:104 final size:104
Alignment explanation
Indices: 30885951--30886161 Score: 413
Period size: 104 Copynumber: 2.0 Consensus size: 104
30885941 GTGAGAAAGG
30885951 GTCAGAATGGATTTTCAAGTCCCCTGTTCTCACTTTAGGAAATCATTAAAAATTTTACAGAAAGA
1 GTCAGAATGGATTTTCAAGTCCCCTGTTCTCACTTTAGGAAATCATTAAAAATTTTACAGAAAGA
30886016 ATTATGAGTCATAATTTATATGTCTAGATTCCTTAGTGA
66 ATTATGAGTCATAATTTATATGTCTAGATTCCTTAGTGA
*
30886055 GTCAGAATGGCTTTTCAAGTCCCCTGTTCTCACTTTAGGAAATCATTAAAAATTTTACAGAAAGA
1 GTCAGAATGGATTTTCAAGTCCCCTGTTCTCACTTTAGGAAATCATTAAAAATTTTACAGAAAGA
30886120 ATTATGAGTCATAATTTATATGTCTAGATTCCTTAGTGA
66 ATTATGAGTCATAATTTATATGTCTAGATTCCTTAGTGA
30886159 GTC
1 GTC
30886162 TATTTTCAAT
Statistics
Matches: 106, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
104 106 1.00
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (104 bp):
GTCAGAATGGATTTTCAAGTCCCCTGTTCTCACTTTAGGAAATCATTAAAAATTTTACAGAAAGA
ATTATGAGTCATAATTTATATGTCTAGATTCCTTAGTGA
Found at i:30886840 original size:14 final size:14
Alignment explanation
Indices: 30886821--30886861 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
30886811 TTATAAATCG
30886821 AAATATATTAATAT
1 AAATATATTAATAT
*
30886835 AAATATAATAATAT
1 AAATATATTAATAT
30886849 AAATATTATTAAT
1 AAATA-TATTAAT
30886862 TACTTAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 18 0.75
15 6 0.25
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATATATTAATAT
Found at i:30894069 original size:30 final size:30
Alignment explanation
Indices: 30894012--30894070 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
30894002 TTTTTTTGAA
* *
30894012 AATATTTACAAAAAGAGATATCTAATTTTT
1 AATATTTACAAAAAGAGATACCAAATTTTT
30894042 AATATTTACAAAAAGAGCA-ACCAAATTTT
1 AATATTTACAAAAAGAG-ATACCAAATTTT
30894071 CAAAAATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.49, C:0.10, G:0.07, T:0.34
Consensus pattern (30 bp):
AATATTTACAAAAAGAGATACCAAATTTTT
Found at i:30900234 original size:23 final size:23
Alignment explanation
Indices: 30900208--30900306 Score: 126
Period size: 23 Copynumber: 4.3 Consensus size: 23
30900198 ATAAGTGTCA
30900208 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
30900231 CACTGATATGTAGCTGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
30900254 CACTGAAATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * * *
30900277 CCCTAAAATGTAGCTGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
30900300 CACTGAT
1 CACTGAT
30900307 CAATAACACT
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 65 1.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.24
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:30900275 original size:46 final size:46
Alignment explanation
Indices: 30900208--30900305 Score: 142
Period size: 46 Copynumber: 2.1 Consensus size: 46
30900198 ATAAGTGTCA
* * * *
30900208 CACTGATATGTAGCCGAAGCTACCACTGATATGTAGCTGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTAAAATGTAGCTGAAGCTAC
* *
30900254 CACTGAAATGTAGCCGTAGCTACCCCTAAAATGTAGCTGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTAAAATGTAGCTGAAGCTAC
30900300 CACTGA
1 CACTGA
30900306 TCAATAACAC
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (46 bp):
CACTGAAATGTAGCCGAAGCTACCACTAAAATGTAGCTGAAGCTAC
Found at i:30905879 original size:50 final size:51
Alignment explanation
Indices: 30905769--30905965 Score: 191
Period size: 50 Copynumber: 3.8 Consensus size: 51
30905759 TTAAGGGAAT
* * **
30905769 GAGGCCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATTATTGAGGTTATGA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGC---ACCGAGG--ATGA
* * *
30905825 GAGGTCCCATGTAAGACAATGTTTGGGACATGGCGTTGGCACCGA-GATGA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGGATGA
* * * * *
30905875 GAGGTCCCCTGTAAGACCATGTCTAGGACATGGAATGGGCACCGATG-TGA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGGATGA
** * *
30905925 GAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
30905966 GTACAGGAAA
Statistics
Matches: 120, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
50 78 0.65
51 1 0.01
52 1 0.01
53 3 0.03
56 37 0.31
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.24
Consensus pattern (51 bp):
GAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGGATGA
Found at i:30906241 original size:20 final size:20
Alignment explanation
Indices: 30906216--30906254 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
30906206 TGAGTTATTT
30906216 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
30906236 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
30906255 GAAGAAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:30915649 original size:19 final size:19
Alignment explanation
Indices: 30915614--30915668 Score: 51
Period size: 19 Copynumber: 3.0 Consensus size: 19
30915604 CTTTACTTTA
* *
30915614 TATT-ATAATAATATAATT
1 TATTAATAATCATTTAATT
30915632 TATTAATAATCATTTAATT
1 TATTAATAATCATTTAATT
* * *
30915651 AATAAAT-ATCTTTTAATT
1 TATTAATAATCATTTAATT
30915669 ATAACACAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
18 14 0.45
19 17 0.55
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (19 bp):
TATTAATAATCATTTAATT
Found at i:30915931 original size:25 final size:23
Alignment explanation
Indices: 30915887--30915947 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 23
30915877 ATTTTGATTT
*
30915887 ATTTAATAATATAATATCATTATA
1 ATTTAATTATATAATATCA-TATA
30915911 ATTTAATTATCATAA-ATTCATATA
1 ATTTAATTAT-ATAATA-TCATATA
*
30915935 ATATAAATTATAT
1 AT-TTAATTATAT
30915948 TTAAATATCA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 18 0.56
25 14 0.44
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (23 bp):
ATTTAATTATATAATATCATATA
Found at i:30915950 original size:35 final size:35
Alignment explanation
Indices: 30915895--30915974 Score: 103
Period size: 35 Copynumber: 2.3 Consensus size: 35
30915885 TTATTTAATA
* *
30915895 ATATAATAT-CATTATAATTTAATTATCATAAATT
1 ATATAATATAAATTATAATTTAAATATCATAAATT
*
30915929 CATATAATATAAATTAT-ATTTAAATATCATTAATT
1 -ATATAATATAAATTATAATTTAAATATCATAAATT
30915964 ATATAAT-TAAA
1 ATATAATATAAA
30915975 ACAAATAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
33 4 0.10
34 7 0.17
35 25 0.61
36 5 0.12
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (35 bp):
ATATAATATAAATTATAATTTAAATATCATAAATT
Found at i:30916407 original size:20 final size:20
Alignment explanation
Indices: 30916382--30916420 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
30916372 TCAGTTATTT
30916382 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
30916402 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
30916421 GAAGAAACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:30922546 original size:20 final size:21
Alignment explanation
Indices: 30922499--30922538 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
30922489 TTTATTATAA
30922499 TATATTTTTATACCATTTCTG
1 TATATTTTTATACCATTTCTG
30922520 TATATTTTTATA-CATTTCT
1 TATATTTTTATACCATTTCT
30922539 TTGAATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.25, C:0.12, G:0.03, T:0.60
Consensus pattern (21 bp):
TATATTTTTATACCATTTCTG
Found at i:30936276 original size:22 final size:22
Alignment explanation
Indices: 30936248--30936293 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
30936238 TATCACACTA
30936248 TCCATTGACTCTTTTGGTACTT
1 TCCATTGACTCTTTTGGTACTT
30936270 TCCATTGACTCTTTTGGTACTT
1 TCCATTGACTCTTTTGGTACTT
30936292 TC
1 TC
30936294 GGTTGTTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.13, C:0.24, G:0.13, T:0.50
Consensus pattern (22 bp):
TCCATTGACTCTTTTGGTACTT
Found at i:30938072 original size:135 final size:135
Alignment explanation
Indices: 30937830--30938140 Score: 358
Period size: 135 Copynumber: 2.3 Consensus size: 135
30937820 TTGGCTTGTA
* ** * * *
30937830 AAATGAATAAGACCATAGTTGAAAGACAATATGGCA-CTATACCGGAAATGAATAAGACAATATT
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCATC-ATACCAAAAATAAAAAAGACAATAGT
* * * * *
30937894 TGAAAGACACTATGGCATTATACCGAAAATGAATAAGACCATAGTTGAAGAACACTATGGCAACA
65 TAAAAGACACTATGGCATCATACCGAAAATAAATAAAACCATAGTTGAAGAACAATATGGCAACA
**
30937959 TGACGG
130 TGACAC
* ** *
30937965 AAATGAATAAGACCACAGTTGAAAGACACTATGGCATCATGTCAAAAATAAAAAAGACCATAGTT
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCATCATACCAAAAATAAAAAAGACAATAGTT
* * *
30938030 AAAAGACACTATGGCATCATGTCAC-AAAA-AAATAAAACCATAGTTGAAGGACAATATGGCATC
66 AAAAGACACTATGGCATCAT-AC-CGAAAATAAATAAAACCATAGTTGAAGAACAATATGGCAAC
*
30938093 ATGTCAC
129 ATGACAC
** *
30938100 AAAAAAATAAAACCATAGTTGAAAGACACTATGGCATCATA
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCATCATA
30938141 TCGAAAGTGT
Statistics
Matches: 147, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
135 140 0.95
136 6 0.04
137 1 0.01
ACGTcount: A:0.47, C:0.16, G:0.17, T:0.20
Consensus pattern (135 bp):
AAATGAATAAGACCATAGTTGAAAGACACTATGGCATCATACCAAAAATAAAAAAGACAATAGTT
AAAAGACACTATGGCATCATACCGAAAATAAATAAAACCATAGTTGAAGAACAATATGGCAACAT
GACAC
Found at i:30938136 original size:45 final size:45
Alignment explanation
Indices: 30937835--30938139 Score: 305
Period size: 45 Copynumber: 6.8 Consensus size: 45
30937825 TTGTAAAATG
* ** ** **
30937835 AATAAGACCATAGTTGAAAGACAATATGGCA-CTATACCGGAAATG
1 AATAAGACCATAGTTGAAAGACACTATGGCATC-ATGTCACAAAAA
* * * * *
30937880 AATAAGACAATATTTGAAAGACACTATGGCATTAT-AC-CGAAAATG
1 AATAAGACCATAGTTGAAAGACACTATGGCATCATGTCAC-AAAA-A
* * ** **
30937925 AATAAGACCATAGTTG-AAGAACACTATGGCAACATGACGGAAATG
1 AATAAGACCATAGTTGAAAG-ACACTATGGCATCATGTCACAAAAA
*
30937970 AATAAGACCACAGTTGAAAGACACTATGGCATCATGTCA-AAAATA
1 AATAAGACCATAGTTGAAAGACACTATGGCATCATGTCACAAAA-A
* *
30938015 AAAAAGACCATAGTTAAAAGACACTATGGCATCATGTCACAAAAA
1 AATAAGACCATAGTTGAAAGACACTATGGCATCATGTCACAAAAA
* * *
30938060 AATAAAACCATAGTTGAAGGACAATATGGCATCATGTCACAAAAA
1 AATAAGACCATAGTTGAAAGACACTATGGCATCATGTCACAAAAA
*
30938105 AATAAAACCATAGTTGAAAGACACTATGGCATCAT
1 AATAAGACCATAGTTGAAAGACACTATGGCATCAT
30938140 ATCGAAAGTG
Statistics
Matches: 222, Mismatches: 29, Indels: 18
0.83 0.11 0.07
Matches are distributed among these distances:
44 10 0.05
45 200 0.90
46 12 0.05
ACGTcount: A:0.47, C:0.16, G:0.17, T:0.20
Consensus pattern (45 bp):
AATAAGACCATAGTTGAAAGACACTATGGCATCATGTCACAAAAA
Found at i:30938611 original size:73 final size:74
Alignment explanation
Indices: 30938523--30938664 Score: 214
Period size: 73 Copynumber: 1.9 Consensus size: 74
30938513 GTGTTTATAC
* * * *
30938523 GAAATGTTTATATGAATAGTTGTTGAATGAATGGTATATCTAATATGTTTACTTGCATATGTTTT
1 GAAATGTTTATATGAATAGATGTTGAATAAAGGGAATATCTAATATGTTTACTTGCATATGTTTT
30938588 ATAACATGT
66 ATAACATGT
* * *
30938597 GAAATG-TTATATGAATAGATGTTGAATAAAGGGAATATCTAATGTGTTTACTTGTATTTGTTTT
1 GAAATGTTTATATGAATAGATGTTGAATAAAGGGAATATCTAATATGTTTACTTGCATATGTTTT
30938661 ATAA
66 ATAA
30938665 TATGAAAAGG
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
73 55 0.90
74 6 0.10
ACGTcount: A:0.34, C:0.04, G:0.18, T:0.44
Consensus pattern (74 bp):
GAAATGTTTATATGAATAGATGTTGAATAAAGGGAATATCTAATATGTTTACTTGCATATGTTTT
ATAACATGT
Found at i:30938681 original size:73 final size:73
Alignment explanation
Indices: 30938531--30938682 Score: 189
Period size: 73 Copynumber: 2.1 Consensus size: 73
30938521 ACGAAATGTT
* * * *
30938531 TATATGAATAGTTGTTGAATGAATGGTATATCTAATATGTTTACTTGCATATGTTTTATAACATG
1 TATATGAATAGATGTTGAATAAAGGGAATATCTAATATGTTTACTTGCATATGTTTTATAACATG
* * *
30938596 TGAAATGT
66 TAAAAGGA
* * * *
30938604 TATATGAATAGATGTTGAATAAAGGGAATATCTAATGTGTTTACTTGTATTTGTTTTATAATATG
1 TATATGAATAGATGTTGAATAAAGGGAATATCTAATATGTTTACTTGCATATGTTTTATAACATG
30938669 -AAAAGGGA
66 TAAAA-GGA
30938677 TATATG
1 TATATG
30938683 TAAACTCACT
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
72 3 0.04
73 64 0.96
ACGTcount: A:0.35, C:0.04, G:0.19, T:0.42
Consensus pattern (73 bp):
TATATGAATAGATGTTGAATAAAGGGAATATCTAATATGTTTACTTGCATATGTTTTATAACATG
TAAAAGGA
Found at i:30945190 original size:25 final size:25
Alignment explanation
Indices: 30945162--30945228 Score: 82
Period size: 25 Copynumber: 2.7 Consensus size: 25
30945152 AAGCTCTTTC
*
30945162 TAGCTATATAACGGGAAGCTCATAA
1 TAGCCATATAACGGGAAGCTCATAA
* *
30945187 TAGCCATGTAATGGGAAGCTCATAA
1 TAGCCATATAACGGGAAGCTCATAA
* *
30945212 GAGCCATA-ATCGGGAAG
1 TAGCCATATAACGGGAAG
30945229 TCCAAGCGAG
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
24 7 0.20
25 28 0.80
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.21
Consensus pattern (25 bp):
TAGCCATATAACGGGAAGCTCATAA
Found at i:30951705 original size:22 final size:22
Alignment explanation
Indices: 30951667--30951722 Score: 53
Period size: 21 Copynumber: 2.6 Consensus size: 22
30951657 ATTTTTTGTT
*
30951667 TTTATGTTTAT-GTTTATGCTTA
1 TTTATGTTTTTAGTTTAT-CTTA
*
30951689 TTTATGTTTTTAG-TTATTTTA
1 TTTATGTTTTTAGTTTATCTTA
* *
30951710 TTTTTATTTTTAG
1 TTTATGTTTTTAG
30951723 ACTTCTTTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 14 0.48
22 14 0.48
23 1 0.03
ACGTcount: A:0.18, C:0.02, G:0.11, T:0.70
Consensus pattern (22 bp):
TTTATGTTTTTAGTTTATCTTA
Found at i:30957433 original size:5 final size:5
Alignment explanation
Indices: 30957423--30957495 Score: 87
Period size: 5 Copynumber: 14.4 Consensus size: 5
30957413 GAACAAATAT
* *
30957423 ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG ATTTG AATTCC
1 ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG -ATTCG
30957474 ATCTC- ACTT-G ATTCG ATTCG AT
1 AT-TCG A-TTCG ATTCG ATTCG AT
30957496 AAAACTTCAA
Statistics
Matches: 60, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
4 2 0.03
5 52 0.87
6 6 0.10
ACGTcount: A:0.22, C:0.21, G:0.16, T:0.41
Consensus pattern (5 bp):
ATTCG
Found at i:30964491 original size:40 final size:40
Alignment explanation
Indices: 30964454--30964588 Score: 189
Period size: 40 Copynumber: 3.4 Consensus size: 40
30964444 TCCTTTCAAG
* *
30964454 AGATTCAGTTGGTATGGCTTGAGAGCGCATACGTTTCAGT
1 AGATTCAGTAGGTATGGCTTGAAAGCGCATACGTTTCAGT
* * *
30964494 AGATACAGTAGGTATGGCTTGAAAGTGCATATGTTTCAGT
1 AGATTCAGTAGGTATGGCTTGAAAGCGCATACGTTTCAGT
* * *
30964534 AGATTCAGTAGGTATTGCTCGAAAGCGCATACATTTCAGT
1 AGATTCAGTAGGTATGGCTTGAAAGCGCATACGTTTCAGT
*
30964574 AGATTCAGTAAGTAT
1 AGATTCAGTAGGTAT
30964589 TGCTCGTCTG
Statistics
Matches: 83, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 83 1.00
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (40 bp):
AGATTCAGTAGGTATGGCTTGAAAGCGCATACGTTTCAGT
Found at i:30967184 original size:20 final size:21
Alignment explanation
Indices: 30967146--30967185 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
30967136 TTTCTTAATT
*
30967146 TTTTAAATAATTTTTATAAGA
1 TTTTAAATAATTTTAATAAGA
*
30967167 TTTTAAA-AGTTTTAATAAG
1 TTTTAAATAATTTTAATAAG
30967186 TTAAAAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.50
Consensus pattern (21 bp):
TTTTAAATAATTTTAATAAGA
Found at i:30969118 original size:9 final size:9
Alignment explanation
Indices: 30969096--30969172 Score: 58
Period size: 9 Copynumber: 9.0 Consensus size: 9
30969086 TAAAAATGGT
*
30969096 TAAAAATCA
1 TAAAAATTA
30969105 TAAAAATTA
1 TAAAAATTA
*
30969114 -GAAAA--A
1 TAAAAATTA
*
30969120 -AAAATTTA
1 TAAAAATTA
30969128 TAAAAAATTA
1 T-AAAAATTA
30969138 -AAAAATTA
1 TAAAAATTA
30969146 -AAACAATTA
1 TAAA-AATTA
*
30969155 TAAATATTA
1 TAAAAATTA
30969164 TAAAAATTA
1 TAAAAATTA
30969173 AAATATCTAA
Statistics
Matches: 55, Mismatches: 7, Indels: 12
0.74 0.09 0.16
Matches are distributed among these distances:
6 4 0.07
8 16 0.29
9 25 0.45
10 10 0.18
ACGTcount: A:0.68, C:0.03, G:0.01, T:0.29
Consensus pattern (9 bp):
TAAAAATTA
Found at i:30969148 original size:7 final size:8
Alignment explanation
Indices: 30969128--30969175 Score: 60
Period size: 9 Copynumber: 5.6 Consensus size: 8
30969118 AAAAAATTTA
30969128 TAAAAAAT
1 TAAAAAAT
30969136 TAAAAAAT
1 TAAAAAAT
30969144 TAAAACAAT
1 TAAAA-AAT
*
30969153 TATAAATAT
1 TA-AAAAAT
30969162 TATAAAAAT
1 TA-AAAAAT
30969171 TAAAA
1 TAAAA
30969176 TATCTAATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
8 16 0.44
9 17 0.47
10 3 0.08
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (8 bp):
TAAAAAAT
Found at i:30974025 original size:17 final size:17
Alignment explanation
Indices: 30974005--30974112 Score: 81
Period size: 17 Copynumber: 6.4 Consensus size: 17
30973995 AAATATCTTC
*
30974005 TCATATAAAATAACAGT
1 TCATACAAAATAACAGT
* * **
30974022 TCATACCAAATGACAAC
1 TCATACAAAATAACAGT
* *
30974039 TCATGCAAAATAATAGT
1 TCATACAAAATAACAGT
** *
30974056 TCATATGAAATATCAGT
1 TCATACAAAATAACAGT
** * *
30974073 TCATACCGAATAATAAT
1 TCATACAAAATAACAGT
*
30974090 TCATGCAAAATAACAGT
1 TCATACAAAATAACAGT
30974107 TCATAC
1 TCATAC
30974113 TTCATCATAA
Statistics
Matches: 63, Mismatches: 28, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
17 63 1.00
ACGTcount: A:0.46, C:0.18, G:0.08, T:0.28
Consensus pattern (17 bp):
TCATACAAAATAACAGT
Found at i:30974060 original size:51 final size:51
Alignment explanation
Indices: 30974005--30974111 Score: 151
Period size: 51 Copynumber: 2.1 Consensus size: 51
30973995 AAATATCTTC
* *
30974005 TCATATAAAATAACAGTTCATACCAAATGACAACTCATGCAAAATAATAGT
1 TCATATAAAATAACAGTTCATACCAAATAACAACTCATGCAAAATAACAGT
* * * * *
30974056 TCATATGAAATATCAGTTCATACCGAATAATAATTCATGCAAAATAACAGT
1 TCATATAAAATAACAGTTCATACCAAATAACAACTCATGCAAAATAACAGT
30974107 TCATA
1 TCATA
30974112 CTTCATCATA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.47, C:0.17, G:0.08, T:0.28
Consensus pattern (51 bp):
TCATATAAAATAACAGTTCATACCAAATAACAACTCATGCAAAATAACAGT
Found at i:30980950 original size:14 final size:14
Alignment explanation
Indices: 30980931--30980957 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
30980921 TACATTGGGC
30980931 AGATTCATGCATGT
1 AGATTCATGCATGT
30980945 AGATTCATGCATG
1 AGATTCATGCATG
30980958 GGGAGATGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:30984508 original size:21 final size:19
Alignment explanation
Indices: 30984472--30984510 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
30984462 TTATTTGAAC
*
30984472 GAATAATTAAATTCAAGTA
1 GAATAATTAAAGTCAAGTA
30984491 GAATATATCTAAAGTCAAGT
1 GAATA-AT-TAAAGTCAAGT
30984511 GATTTTAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 2 0.12
21 10 0.59
ACGTcount: A:0.49, C:0.08, G:0.13, T:0.31
Consensus pattern (19 bp):
GAATAATTAAAGTCAAGTA
Found at i:30985891 original size:45 final size:45
Alignment explanation
Indices: 30985824--30986120 Score: 308
Period size: 45 Copynumber: 6.7 Consensus size: 45
30985814 AGGTATAAGG
* *
30985824 TATATATAATAATTGTCGGTTTCACCAACCAGTGCTAGGCACACA
1 TATATATAATATTTGTCGGTTTCACCGACCAGTGCTAGGCACACA
* * *
30985869 TATATATAATATTTGTCAGTTTCATCGACCAGTGCTGGGCACACA
1 TATATATAATATTTGTCGGTTTCACCGACCAGTGCTAGGCACACA
* * * *
30985914 TATATATAATA----T---TTTCACCGACTAGTGTTAGACACAAA
1 TATATATAATATTTGTCGGTTTCACCGACCAGTGCTAGGCACACA
* **
30985952 TATA-ATAATAATTGTCGGTTTCACCGACCAGTGCTAGATACACA
1 TATATATAATATTTGTCGGTTTCACCGACCAGTGCTAGGCACACA
* * * * *
30985996 TATATATAATATTTGTTGGTTTCACTGAGCAGTGCTGGGCACGCA
1 TATATATAATATTTGTCGGTTTCACCGACCAGTGCTAGGCACACA
* *
30986041 TATATATAATATTTGCCTGTTTCACC-AGCCAGTGC-AGGGCACATACA
1 TATATATAATATTTGTCGGTTTCACCGA-CCAGTGCTA-GGCAC--ACA
*
30986088 TATATATAATATTTTTCGGTTTCACCGACCAGT
1 TATATATAATATTTGTCGGTTTCACCGACCAGT
30986121 TTTAGGGCGT
Statistics
Matches: 206, Mismatches: 33, Indels: 24
0.78 0.13 0.09
Matches are distributed among these distances:
37 6 0.03
38 24 0.12
41 2 0.01
44 27 0.13
45 116 0.56
47 30 0.15
48 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (45 bp):
TATATATAATATTTGTCGGTTTCACCGACCAGTGCTAGGCACACA
Found at i:30985930 original size:38 final size:38
Alignment explanation
Indices: 30985888--30986009 Score: 118
Period size: 38 Copynumber: 3.1 Consensus size: 38
30985878 TATTTGTCAG
* * *
30985888 TTTCATCGACCAGTGCTGGGCACACATATATATAATAT
1 TTTCACCGACCAGTGCTAGACACACATATATATAATAT
* * * *
30985926 TTTCACCGACTAGTGTTAGACACAAATATAATAATAATTGT
1 TTTCACCGACCAGTGCTAGACACACATAT-AT-ATAA-TAT
*
30985967 CGGTTTCACCGACCAGTGCTAGATACACATATATATAATAT
1 ---TTTCACCGACCAGTGCTAGACACACATATATATAATAT
30986008 TT
1 TT
30986010 GTTGGTTTCA
Statistics
Matches: 66, Mismatches: 12, Indels: 12
0.73 0.13 0.13
Matches are distributed among these distances:
38 25 0.38
39 2 0.03
40 4 0.06
41 4 0.06
42 4 0.06
43 2 0.03
44 25 0.38
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33
Consensus pattern (38 bp):
TTTCACCGACCAGTGCTAGACACACATATATATAATAT
Found at i:30985973 original size:82 final size:83
Alignment explanation
Indices: 30985843--30986009 Score: 228
Period size: 82 Copynumber: 2.0 Consensus size: 83
30985833 TAATTGTCGG
* * * * * *
30985843 TTTCACCAACCAGTGCTAGGCACACATATATATAATATTTGTCAGTTTCATCGACCAGTGCTGGG
1 TTTCACCAACCAGTGCTAGACACAAATATATATAATAATTGTCAGTTTCACCGACCAGTGCTAGA
30985908 CACACATATATATAATAT
66 CACACATATATATAATAT
* * * *
30985926 TTTCACCGACTAGTGTTAGACACAAATATA-ATAATAATTGTCGGTTTCACCGACCAGTGCTAGA
1 TTTCACCAACCAGTGCTAGACACAAATATATATAATAATTGTCAGTTTCACCGACCAGTGCTAGA
*
30985990 TACACATATATATAATAT
66 CACACATATATATAATAT
30986008 TT
1 TT
30986010 GTTGGTTTCA
Statistics
Matches: 73, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
82 48 0.66
83 25 0.34
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32
Consensus pattern (83 bp):
TTTCACCAACCAGTGCTAGACACAAATATATATAATAATTGTCAGTTTCACCGACCAGTGCTAGA
CACACATATATATAATAT
Found at i:30994544 original size:19 final size:18
Alignment explanation
Indices: 30994496--30994544 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
30994486 ATTTTCACTA
* *
30994496 TTTTTTTCTCTCTTTTTC
1 TTTTTTTCACTCGTTTTC
* *
30994514 TTTTTGTGACTCGTTTTC
1 TTTTTTTCACTCGTTTTC
30994532 TTTTTTCTCACTC
1 TTTTTT-TCACTC
30994545 TTTCTTTCCT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
18 19 0.79
19 5 0.21
ACGTcount: A:0.04, C:0.22, G:0.06, T:0.67
Consensus pattern (18 bp):
TTTTTTTCACTCGTTTTC
Found at i:30994594 original size:18 final size:18
Alignment explanation
Indices: 30994573--30994609 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
30994563 TTCTGAACTC
*
30994573 TTTTT-TTTTCTTTTTCA
1 TTTTTCTTTTCTTGTTCA
30994590 TTTTTCTTTTCTTGTTCA
1 TTTTTCTTTTCTTGTTCA
30994608 TT
1 TT
30994610 CGTTTTCGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.05, C:0.14, G:0.03, T:0.78
Consensus pattern (18 bp):
TTTTTCTTTTCTTGTTCA
Found at i:30998002 original size:51 final size:51
Alignment explanation
Indices: 30997919--30998023 Score: 147
Period size: 51 Copynumber: 2.1 Consensus size: 51
30997909 ATCTGACTTA
* * ** *
30997919 AAACTTGCATTGATGTTGTCTGAATTAAGACACACTTAATGAACATAAATC
1 AAACATGCATTGATGCTGTCCAAATTAAGACACACTTAATAAACATAAATC
* *
30997970 AAACATGCATTGATGCTGTCCAAATTAGGACACACTTAATAAACATGAATC
1 AAACATGCATTGATGCTGTCCAAATTAAGACACACTTAATAAACATAAATC
30998021 AAA
1 AAA
30998024 GTAAATACCA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (51 bp):
AAACATGCATTGATGCTGTCCAAATTAAGACACACTTAATAAACATAAATC
Found at i:31002726 original size:19 final size:18
Alignment explanation
Indices: 31002702--31002748 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
31002692 AAAGATGATG
31002702 GTTTTATTTTATTTGATTA
1 GTTTTATTTTATTT-ATTA
*
31002721 GTTTTATCATTATTTATTA
1 GTTTTAT-TTTATTTATTA
31002740 -TTTTATTTT
1 GTTTTATTTT
31002749 TATAACCTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 2 0.08
18 6 0.24
19 11 0.44
20 6 0.24
ACGTcount: A:0.21, C:0.02, G:0.06, T:0.70
Consensus pattern (18 bp):
GTTTTATTTTATTTATTA
Found at i:31003229 original size:14 final size:14
Alignment explanation
Indices: 31003210--31003239 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
31003200 TGTTTGGTTG
*
31003210 AATTTTTTAAAAAT
1 AATTTTTGAAAAAT
31003224 AATTTTTGAAAAAT
1 AATTTTTGAAAAAT
31003238 AA
1 AA
31003240 AAATGAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.43
Consensus pattern (14 bp):
AATTTTTGAAAAAT
Found at i:31003861 original size:21 final size:22
Alignment explanation
Indices: 31003831--31003900 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 22
31003821 TTTTTCATTT
31003831 TTTTTGAAAATGAAAATGAAAA
1 TTTTTGAAAATGAAAATGAAAA
31003853 TTTTT-AAAATGAAAATGAAAATTA
1 TTTTTGAAAATGAAAATG-AAA--A
31003877 TTTTTTGAAAATGAAAATGGAAAA
1 -TTTTTGAAAATGAAAAT-GAAAA
31003901 ATATTACTAG
Statistics
Matches: 42, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
21 12 0.29
22 8 0.19
24 2 0.05
25 5 0.12
26 14 0.33
27 1 0.02
ACGTcount: A:0.53, C:0.00, G:0.13, T:0.34
Consensus pattern (22 bp):
TTTTTGAAAATGAAAATGAAAA
Found at i:31003867 original size:27 final size:26
Alignment explanation
Indices: 31003835--31003900 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 26
31003825 TCATTTTTTT
31003835 TGAAAATGAAAATGAAAATTTTT-AAAA
1 TGAAAATGAAAAT--AAATTTTTGAAAA
* *
31003862 TGAAAATGAAAATTATTTTTTGAAAA
1 TGAAAATGAAAATAAATTTTTGAAAA
31003888 TGAAAATGGAAAA
1 TGAAAAT-GAAAA
31003901 ATATTACTAG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
25 6 0.17
26 11 0.31
27 18 0.51
ACGTcount: A:0.56, C:0.00, G:0.14, T:0.30
Consensus pattern (26 bp):
TGAAAATGAAAATAAATTTTTGAAAA
Found at i:31003915 original size:27 final size:26
Alignment explanation
Indices: 31003836--31003915 Score: 62
Period size: 27 Copynumber: 3.2 Consensus size: 26
31003826 CATTTTTTTT
31003836 GAAAATGAAAATG-AAAAT-TT--T-
1 GAAAATGAAAATGAAAAATATTACTA
* * ** *
31003857 TAAAATGAAAATGAAAATTATTTTTT
1 GAAAATGAAAATGAAAAATATTACTA
31003883 GAAAATGAAAATGGAAAAATATTACTA
1 GAAAATGAAAAT-GAAAAATATTACTA
*
31003910 GCAAAT
1 GAAAAT
31003916 ATTTTATAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
21 12 0.27
22 4 0.09
23 2 0.04
25 1 0.02
26 11 0.24
27 15 0.33
ACGTcount: A:0.55, C:0.03, G:0.12, T:0.30
Consensus pattern (26 bp):
GAAAATGAAAATGAAAAATATTACTA
Found at i:31004196 original size:14 final size:14
Alignment explanation
Indices: 31004173--31004216 Score: 61
Period size: 16 Copynumber: 3.0 Consensus size: 14
31004163 TTTACATAAA
*
31004173 ATTTTCATAAATAT
1 ATTTTTATAAATAT
31004187 ATTTTTATAAAAATAT
1 ATTTTTAT--AAATAT
31004203 ATTTTTATAAATAT
1 ATTTTTATAAATAT
31004217 TTGTACTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
14 13 0.48
16 14 0.52
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (14 bp):
ATTTTTATAAATAT
Found at i:31004202 original size:16 final size:16
Alignment explanation
Indices: 31004181--31004213 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
31004171 AAATTTTCAT
31004181 AAATATATTTTTATAA
1 AAATATATTTTTATAA
31004197 AAATATATTTTTATAA
1 AAATATATTTTTATAA
31004213 A
1 A
31004214 TATTTGTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
AAATATATTTTTATAA
Found at i:31019766 original size:19 final size:19
Alignment explanation
Indices: 31019739--31019787 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
31019729 ATCATATGGG
*
31019739 TATCAATACTTTTTGGAAA
1 TATCGATACTTTTTGGAAA
31019758 TATCGATACTTTTTGGAAA
1 TATCGATACTTTTTGGAAA
31019777 TATCGATACTT
1 TATCGATACTT
31019788 CTTGTATAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (19 bp):
TATCGATACTTTTTGGAAA
Found at i:31033014 original size:15 final size:17
Alignment explanation
Indices: 31032980--31033016 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
31032970 GACATGGTCC
*
31032980 TGTGAGACACACGGGCG
1 TGTGTGACACACGGGCG
*
31032997 TGTGTGACACACGGGTG
1 TGTGTGACACACGGGCG
31033014 TGT
1 TGT
31033017 CCTAGGTTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.19, C:0.19, G:0.41, T:0.22
Consensus pattern (17 bp):
TGTGTGACACACGGGCG
Found at i:31033755 original size:11 final size:11
Alignment explanation
Indices: 31033741--31033817 Score: 57
Period size: 11 Copynumber: 6.8 Consensus size: 11
31033731 TCCTTTTTCC
31033741 TATTATTTTAT
1 TATTATTTTAT
31033752 TATTATTTTA-
1 TATTATTTTAT
*
31033762 TATTTAGTTTAT
1 TA-TTATTTTAT
* *
31033774 TATTATCTTGT
1 TATTATTTTAT
* * *
31033785 TAGTATATTCT
1 TATTATTTTAT
*
31033796 TATTATGATTAT
1 TATTAT-TTTAT
31033808 TATTAGTTTT
1 TATTA-TTTT
31033818 GGTTTTTTTT
Statistics
Matches: 52, Mismatches: 10, Indels: 7
0.75 0.14 0.10
Matches are distributed among these distances:
10 2 0.04
11 36 0.69
12 13 0.25
13 1 0.02
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (11 bp):
TATTATTTTAT
Found at i:31045214 original size:19 final size:18
Alignment explanation
Indices: 31045168--31045215 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
31045158 GATATAATTT
*
31045168 TTGTCATAAAATAATTAAT
1 TTGT-ATAAAATAATTAAA
* *
31045187 TTTTATAAAATAGTTAAA
1 TTGTATAAAATAATTAAA
31045205 TTGTATTAAAA
1 TTGTA-TAAAA
31045216 ATTTGAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
18 16 0.67
19 8 0.33
ACGTcount: A:0.48, C:0.02, G:0.06, T:0.44
Consensus pattern (18 bp):
TTGTATAAAATAATTAAA
Found at i:31045266 original size:20 final size:21
Alignment explanation
Indices: 31045222--31045269 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
31045212 AAAAATTTGA
31045222 ATTTTTAGTCAATTTTACAATT
1 ATTTTTAGTCAATTTTA-AATT
* *
31045244 ATTTTTAGTGAATTTT-TATT
1 ATTTTTAGTCAATTTTAAATT
31045264 ATTTTT
1 ATTTTT
31045270 GACAGATTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 9 0.38
22 15 0.62
ACGTcount: A:0.27, C:0.04, G:0.06, T:0.62
Consensus pattern (21 bp):
ATTTTTAGTCAATTTTAAATT
Found at i:31045842 original size:14 final size:14
Alignment explanation
Indices: 31045819--31045848 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
31045809 CATCCCTCAT
*
31045819 TCACATCTCTTCTC
1 TCACAACTCTTCTC
31045833 TCACAACTCTTCTC
1 TCACAACTCTTCTC
31045847 TC
1 TC
31045849 CTCTCTCACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.43, G:0.00, T:0.40
Consensus pattern (14 bp):
TCACAACTCTTCTC
Found at i:31046011 original size:6 final size:6
Alignment explanation
Indices: 31046000--31046024 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
31045990 CATTTCTAGG
31046000 TCATTT TCATTT TCATTT TCATTT T
1 TCATTT TCATTT TCATTT TCATTT T
31046025 GGAGAAAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (6 bp):
TCATTT
Found at i:31046072 original size:58 final size:57
Alignment explanation
Indices: 31046000--31046130 Score: 162
Period size: 58 Copynumber: 2.3 Consensus size: 57
31045990 CATTTCTAGG
*
31046000 TCATTT-TCATTTTCA-TTTTCATTTTGGAGAAAAAGCA-AATTCATTTCCAAATGATT-
1 TCATTTCTCATTTTCATTTTTCATTTTGGAG-AAAACCATAA-TCATTTCCAAAT-ATTC
* *
31046056 TCATTTCTCAATTTTCATTTTTTATTTTGGAGAAGACCATAATCATTTCCAAATATTC
1 TCATTTCTC-ATTTTCATTTTTCATTTTGGAGAAAACCATAATCATTTCCAAATATTC
31046114 TCATTTCTCCATTTTCA
1 TCATTTCT-CATTTTCA
31046131 CCATTTCTAT
Statistics
Matches: 66, Mismatches: 3, Indels: 10
0.84 0.04 0.13
Matches are distributed among these distances:
56 6 0.09
57 5 0.08
58 39 0.59
59 16 0.24
ACGTcount: A:0.29, C:0.18, G:0.07, T:0.47
Consensus pattern (57 bp):
TCATTTCTCATTTTCATTTTTCATTTTGGAGAAAACCATAATCATTTCCAAATATTC
Found at i:31051824 original size:29 final size:29
Alignment explanation
Indices: 31051791--31052005 Score: 202
Period size: 29 Copynumber: 7.4 Consensus size: 29
31051781 TCAGCGACCA
*
31051791 ATGAAAAGGGATAGCTTCGGCTATTGAAT
1 ATGAAAAGGGATAGCTTCGGCTATTGATT
* * *
31051820 ATGAAAAGGGATAGATTTGGCTATCGATT
1 ATGAAAAGGGATAGCTTCGGCTATTGATT
*
31051849 ATGAAAAGGGATAGCTTCGGCTATCGATT
1 ATGAAAAGGGATAGCTTCGGCTATTGATT
* * * * *
31051878 ATGAAAAGGGAT-GGTGACGACCATTAATT
1 ATGAAAAGGGATAGCT-TCGGCTATTGATT
* * ** * *
31051907 ATGAAAAGGGAT-GGTGACAACCATCAGA-T
1 ATGAAAAGGGATAGCT-TCGGCTAT-TGATT
* * *
31051936 ATGACAAGGGACAGCTTTGGCTATTGATT
1 ATGAAAAGGGATAGCTTCGGCTATTGATT
*
31051965 ATGAAAAGGGATAGCTTCGGCTATCGATT
1 ATGAAAAGGGATAGCTTCGGCTATTGATT
31051994 ATGAAAAGGGAT
1 ATGAAAAGGGAT
31052006 GGTGACAACC
Statistics
Matches: 154, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
28 4 0.03
29 147 0.95
30 3 0.02
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.26
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTCGGCTATTGATT
Found at i:31051939 original size:87 final size:87
Alignment explanation
Indices: 31051842--31052037 Score: 252
Period size: 87 Copynumber: 2.2 Consensus size: 87
31051832 AGATTTGGCT
* *
31051842 ATCGATTATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGAT-GGTGACGACCATTAAT
1 ATCGATTATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGATAGCT-ACGACCATCAAT
31051906 TATGAAAAGGGATGGTGACAACC
65 TATGAAAAGGGATGGTGACAACC
* * * * * * * *
31051929 ATCAGA-TATGACAAGGGACAGCTTTGGCTATTGATTATGAAAAGGGATAGCTTCGGCTATCGAT
1 ATC-GATTATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGATAGCTACGACCATCAAT
31051993 TATGAAAAGGGATGGTGACAACC
65 TATGAAAAGGGATGGTGACAACC
*
31052016 ATCGATTAATGAAAAGCGATAG
1 ATCGATT-ATGAAAAGGGATAG
31052038 TTTTGACCAT
Statistics
Matches: 92, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
86 2 0.02
87 75 0.82
88 15 0.16
ACGTcount: A:0.36, C:0.13, G:0.27, T:0.24
Consensus pattern (87 bp):
ATCGATTATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGATAGCTACGACCATCAATT
ATGAAAAGGGATGGTGACAACC
Found at i:31051995 original size:116 final size:117
Alignment explanation
Indices: 31051818--31052031 Score: 358
Period size: 116 Copynumber: 1.8 Consensus size: 117
31051808 CGGCTATTGA
*
31051818 ATATGAAAAGGGATAGATTTGGCTATCGATTATGAAAAGGGATAGCTTCGGCTATCGATTATGAA
1 ATATGAAAAGGGACAGATTTGGCTATCGATTATGAAAAGGGATAGCTTCGGCTATCGATTATGAA
* *
31051883 AAGGGATGGTGACGACCATTAATT-ATGAAAAGGGATGGTGACAACCATCAG
66 AAGGGATGGTGACAACCATCAATTAATGAAAAGGGATGGTGACAACCATCAG
* * *
31051934 ATATGACAAGGGACAGCTTTGGCTATTGATTATGAAAAGGGATAGCTTCGGCTATCGATTATGAA
1 ATATGAAAAGGGACAGATTTGGCTATCGATTATGAAAAGGGATAGCTTCGGCTATCGATTATGAA
*
31051999 AAGGGATGGTGACAACCATCGATTAATGAAAAG
66 AAGGGATGGTGACAACCATCAATTAATGAAAAG
31052032 CGATAGTTTT
Statistics
Matches: 90, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
116 82 0.91
117 8 0.09
ACGTcount: A:0.36, C:0.12, G:0.27, T:0.25
Consensus pattern (117 bp):
ATATGAAAAGGGACAGATTTGGCTATCGATTATGAAAAGGGATAGCTTCGGCTATCGATTATGAA
AAGGGATGGTGACAACCATCAATTAATGAAAAGGGATGGTGACAACCATCAG
Found at i:31052023 original size:58 final size:57
Alignment explanation
Indices: 31051791--31052037 Score: 201
Period size: 58 Copynumber: 4.2 Consensus size: 57
31051781 TCAGCGACCA
* * * ** * *
31051791 ATGAAAAGGGATAGCTTCGGCTATTGAATATGAAAAGGGATAGATTTGGCTATCGATT
1 ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGAT-GGTACGACCATCGATT
**
31051849 ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGATGGTGACGACCATTAATT
1 ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGATGGT-ACGACCATCGATT
* * ** * * * * ** * * *
31051907 ATGAAAAGGGAT-GGTGACAACCATCAGA-TATGACAAGGGACAGCTTTGGCTATTGATT
1 ATGAAAAGGGATAGCT-TCGGCTATC-GATTATGAAAAGGGA-TGGTACGACCATCGATT
*
31051965 ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGATGGTGACAACCATCGATT
1 ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGATGGT-ACGACCATCGATT
*
31052023 AATGAAAAGCGATAG
1 -ATGAAAAGGGATAG
31052038 TTTTGACCAT
Statistics
Matches: 144, Mismatches: 37, Indels: 15
0.73 0.19 0.08
Matches are distributed among these distances:
57 8 0.06
58 117 0.81
59 19 0.13
ACGTcount: A:0.36, C:0.12, G:0.28, T:0.25
Consensus pattern (57 bp):
ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAGGGATGGTACGACCATCGATT
Found at i:31052888 original size:29 final size:29
Alignment explanation
Indices: 31052846--31053089 Score: 183
Period size: 29 Copynumber: 8.4 Consensus size: 29
31052836 TCAGCGACCA
* *
31052846 ATGAAAAGGGATAGCTTTGGCTATCGAA-T
1 ATGAAAAGGGATAGCTTCGACTATC-AATT
31052875 ATGAAAAGGGATAGCTTCGACTATCAATT
1 ATGAAAAGGGATAGCTTCGACTATCAATT
* *
31052904 ATGAAAAAGGATAGCTTCGGCTATCAATT
1 ATGAAAAGGGATAGCTTCGACTATCAATT
* * *
31052933 ATGAAAAGAGAT-GGTGAT-GACCATCAATT
1 ATGAAAAGGGATAGCT--TCGACTATCAATT
* * * *
31052962 ATGAAAAGGGAT-GGTGACGACCATCAAAT
1 ATGAAAAGGGATAGCT-TCGACTATCAATT
* * *
31052991 ATGAAAAGGGATAGCTTTGGCTATCGATT
1 ATGAAAAGGGATAGCTTCGACTATCAATT
* * * *
31053020 ATGAAAAGGGATTG-TGACGACCATCGATT
1 ATGAAAAGGGATAGCT-TCGACTATCAATT
* * * * *
31053049 AATGGAAAGGGATAGTTTCGACCACCAAAT
1 -ATGAAAAGGGATAGCTTCGACTATCAATT
*
31053079 ATGCAAAGGGA
1 ATGAAAAGGGA
31053090 CGGTTATGAC
Statistics
Matches: 175, Mismatches: 32, Indels: 16
0.78 0.14 0.07
Matches are distributed among these distances:
28 5 0.03
29 145 0.83
30 24 0.14
31 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.25, T:0.24
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTCGACTATCAATT
Found at i:31052995 original size:87 final size:86
Alignment explanation
Indices: 31052874--31053081 Score: 254
Period size: 87 Copynumber: 2.4 Consensus size: 86
31052864 GGCTATCGAA
* * *
31052874 TATGAAAAGGGATAGCTTCGACTATCAATTATGAAAAAGGATAGCTTCGGCTATCAATTATGAAA
1 TATGAAAAGGGAT-GGTTCGACCATCAAATATGAAAAAGGATAGCTTCGGCTATCAATTATGAAA
*
31052939 AGAGATGGTGATGACCATCAAT
65 AGAGATGGTGACGACCATCAAT
* * * *
31052961 TATGAAAAGGGATGGTGACGACCATCAAATATGAAAAGGGATAGCTTTGGCTATCGATTATGAAA
1 TATGAAAAGGGATGGT-TCGACCATCAAATATGAAAAAGGATAGCTTCGGCTATCAATTATGAAA
* * *
31053026 AGGGATTGTGACGACCATCGAT
65 AGAGATGGTGACGACCATCAAT
* * *
31053048 TAATGGAAAGGGATAGTTTCGACCACCAAATATG
1 T-ATGAAAAGGGAT-GGTTCGACCATCAAATATG
31053082 CAAAGGGACG
Statistics
Matches: 103, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
86 2 0.02
87 74 0.72
88 25 0.24
89 2 0.02
ACGTcount: A:0.38, C:0.13, G:0.25, T:0.25
Consensus pattern (86 bp):
TATGAAAAGGGATGGTTCGACCATCAAATATGAAAAAGGATAGCTTCGGCTATCAATTATGAAAA
GAGATGGTGACGACCATCAAT
Found at i:31068483 original size:42 final size:43
Alignment explanation
Indices: 31068385--31068540 Score: 167
Period size: 43 Copynumber: 3.6 Consensus size: 43
31068375 TCTCGTACGG
* * * *
31068385 TGCCAACGTCCTAGACGTGGTCTTACATGTAATCA-ACTATCGA
1 TGCCAACGTCCCAGACATGGTCTTACATGAAATCATA-TACCGA
*
31068428 TGCC-ACTGTCCCAGACAAGGTCTTACATGAAATCATATA-CGA
1 TGCCAAC-GTCCCAGACATGGTCTTACATGAAATCATATACCGA
* * *
31068470 TGCCAATGTCCCAGACATGGTCTTACACGTAAATC-TCAAACCGA
1 TGCCAACGTCCCAGACATGGTCTTACATG-AAATCAT-ATACCGA
*
31068514 TGCCAACGTCCTAGACATGGTCTTACA
1 TGCCAACGTCCCAGACATGGTCTTACA
31068541 CAAAATCACA
Statistics
Matches: 97, Mismatches: 10, Indels: 11
0.82 0.08 0.09
Matches are distributed among these distances:
42 30 0.31
43 38 0.39
44 29 0.30
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (43 bp):
TGCCAACGTCCCAGACATGGTCTTACATGAAATCATATACCGA
Found at i:31074110 original size:123 final size:124
Alignment explanation
Indices: 31073812--31074146 Score: 555
Period size: 123 Copynumber: 2.7 Consensus size: 124
31073802 TGTTTCTGGT
* * *
31073812 CAAATAGTATAAAATCACCTCTACTAGGATGCTATTTGAGAAGTAATTGTGAAATCGCGCCCTCG
1 CAAATAGTATAAAATCGCCTCTACCAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
* * *
31073877 TGGACGCGATTTTACTACAGTATGTCATGTAAGAAATAATTTTTTTTGACATTTCTGAG
66 TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTTTGACATTTCTAAG
* * *
31073936 AAAATAGTATAAAATCGCCTCTACCAGGATGATATTTGAGAAGAAATTGTGAAATCGCACCCTCG
1 CAAATAGTATAAAATCGCCTCTACCAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
*
31074001 TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAA-TTTTTTTGACGTTTCTAAG
66 TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTTTGACATTTCTAAG
* *
31074059 CAAATAGTATAAAATCGCCTCTACCAGGATGCTATTTGGGAAGAAATTGTGAAATCGCGCCCTGG
1 CAAATAGTATAAAATCGCCTCTACCAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
31074124 TGGACGCGATTTTGCTACAGTAG
66 TGGACGCGATTTTGCTACAGTAG
31074147 CAAGTTTGGG
Statistics
Matches: 196, Mismatches: 15, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
123 100 0.51
124 96 0.49
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.31
Consensus pattern (124 bp):
CAAATAGTATAAAATCGCCTCTACCAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTTTGACATTTCTAAG
Found at i:31077269 original size:10 final size:10
Alignment explanation
Indices: 31077254--31077278 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
31077244 CAAATCTAAC
31077254 ATTATGTAAA
1 ATTATGTAAA
31077264 ATTATGTAAA
1 ATTATGTAAA
31077274 ATTAT
1 ATTAT
31077279 TAAGTCCCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (10 bp):
ATTATGTAAA
Found at i:31077323 original size:55 final size:56
Alignment explanation
Indices: 31077262--31077628 Score: 309
Period size: 55 Copynumber: 6.3 Consensus size: 56
31077252 ACATTATGTA
* * * *
31077262 AAATTATGTAAAATTATTAAGTCCCAAAATTTTGTTAATGGTTA-GTAAAACTATC
1 AAATTATGTAAAATTATTAAGTCCAAAAATTGTATTAATGGTTAGGTAAAATTATC
* * *
31077317 AAATTATGTAAAATTATGTAAAATTATTTAGCCCAAAAAATTTTAATTAA--ATTAGGTAAAATT
1 AAATTATGT-AAA--AT-T---ATTA---AGTCC-AAAAATTGT-ATTAATGGTTAGGTAAAATT
31077380 ATC
54 ATC
*
31077383 AAATTATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGGGTTTTTTATCAAATTATGT
1 AAATTATGTAAAATTATTAAGTCCAAAAATTGTATTAATGGTTA-GG-----TA--AAATTA--T
*
31077448 A
56 C
** * *
31077449 AAATTATGTAAAATTATTAAGTAAAAAAAATT-AATTAA--ATTAGGTAAAATTATC
1 AAATTATGTAAAATTATTAAGT-CCAAAAATTGTATTAATGGTTAGGTAAAATTATC
* * *
31077503 AAATTAGGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTA-CTAAAATTATC
1 AAATTATGTAAAATTATTAAGTCCAAAAATTGTATTAATGGTTAGGTAAAATTATC
* *
31077558 AAATTATGTAAAATTATTAAGTCTAAGAATTGTATTAATGGTTA-GTAAAATTATC
1 AAATTATGTAAAATTATTAAGTCCAAAAATTGTATTAATGGTTAGGTAAAATTATC
31077613 AAATTATGTAAAATTA
1 AAATTATGTAAAATTA
31077629 GGTTAGGGTT
Statistics
Matches: 255, Mismatches: 28, Indels: 58
0.75 0.08 0.17
Matches are distributed among these distances:
53 7 0.03
54 30 0.12
55 93 0.36
56 19 0.07
57 2 0.01
58 4 0.02
59 5 0.02
62 7 0.03
63 4 0.02
64 9 0.04
65 10 0.04
66 54 0.21
67 11 0.04
ACGTcount: A:0.46, C:0.05, G:0.11, T:0.38
Consensus pattern (56 bp):
AAATTATGTAAAATTATTAAGTCCAAAAATTGTATTAATGGTTAGGTAAAATTATC
Found at i:31077332 original size:10 final size:10
Alignment explanation
Indices: 31077317--31077343 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
31077307 TAAAACTATC
31077317 AAATTATGTA
1 AAATTATGTA
31077327 AAATTATGTA
1 AAATTATGTA
31077337 AAATTAT
1 AAATTAT
31077344 TTAGCCCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (10 bp):
AAATTATGTA
Found at i:31077388 original size:18 final size:18
Alignment explanation
Indices: 31077365--31077399 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
31077355 AATTTTAATT
31077365 AAATTAGGTAAAATTATC
1 AAATTAGGTAAAATTATC
*
31077383 AAATTATGTAAAATTAT
1 AAATTAGGTAAAATTAT
31077400 TAAGTCCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.51, C:0.03, G:0.09, T:0.37
Consensus pattern (18 bp):
AAATTAGGTAAAATTATC
Found at i:31077390 original size:66 final size:64
Alignment explanation
Indices: 31077254--31077399 Score: 197
Period size: 66 Copynumber: 2.2 Consensus size: 64
31077244 CAAATCTAAC
* *
31077254 ATTATGTAAAATTATGTAAAATTATTAAGTCCCAAAATTTTGTTAATGGTTAGTAAAACTATCAA
1 ATTATGTAAAATTATGTAAAATTATTAAGTCCCAAAATTTTATTAA-GATTAGTAAAACTATCAA
* *
31077319 ATTATGTAAAATTATGTAAAATTATTTAG-CCCAAAAAATTTTAATTAA-ATTAGGTAAAATTAT
1 ATTATGTAAAATTATGTAAAATTATTAAGTCCC--AAAATTTT-ATTAAGATTA-GTAAAACTAT
31077382 CAA
62 CAA
31077385 ATTATGTAAAATTAT
1 ATTATGTAAAATTAT
31077400 TAAGTCCAAA
Statistics
Matches: 73, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
64 3 0.04
65 31 0.42
66 35 0.48
67 4 0.05
ACGTcount: A:0.46, C:0.06, G:0.09, T:0.39
Consensus pattern (64 bp):
ATTATGTAAAATTATGTAAAATTATTAAGTCCCAAAATTTTATTAAGATTAGTAAAACTATCAA
Done.