Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62769430
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1067035 characters in sequence are not A, C, G, or T
File 111 of 206
Found at i:33034120 original size:5 final size:5
Alignment explanation
Indices: 33034112--33034150 Score: 55
Period size: 5 Copynumber: 8.0 Consensus size: 5
33034102 TAATATATTA
33034112 TATAT TATA- TAT-T ATATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT -TATAT TATAT TATAT TATAT TATAT
33034151 GGTAGTAGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
4 3 0.10
5 27 0.87
6 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:33036838 original size:22 final size:22
Alignment explanation
Indices: 33036810--33036854 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
33036800 CAAGATAAGT
33036810 TTCTAGCTTCTTGGTTGTTGTC
1 TTCTAGCTTCTTGGTTGTTGTC
33036832 TTCTAGCTTCTTGGTTGTTGTC
1 TTCTAGCTTCTTGGTTGTTGTC
33036854 T
1 T
33036855 ACAGTCAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.04, C:0.18, G:0.22, T:0.56
Consensus pattern (22 bp):
TTCTAGCTTCTTGGTTGTTGTC
Found at i:33041068 original size:21 final size:21
Alignment explanation
Indices: 33041042--33041102 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
33041032 TGACACATAA
33041042 GTGCCTGAAACGACACACGAG
1 GTGCCTGAAACGACACACGAG
* *
33041063 GTGCCTGATACGGCACACGAG
1 GTGCCTGAAACGACACACGAG
* *
33041084 CTACCTGAAATACGACACA
1 GTGCCTG-AA-ACGACACA
33041103 TAAAGTACCT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 24 0.75
22 1 0.03
23 7 0.22
ACGTcount: A:0.33, C:0.30, G:0.25, T:0.13
Consensus pattern (21 bp):
GTGCCTGAAACGACACACGAG
Found at i:33042566 original size:21 final size:22
Alignment explanation
Indices: 33042540--33042589 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 22
33042530 ATTAATAAGT
33042540 ATGTAT-ATATATTAATTACAA
1 ATGTATAATATATTAATTACAA
* *
33042561 ATGTATACATATATTTATTACAT
1 ATGTATA-ATATATTAATTACAA
33042584 ATGTAT
1 ATGTAT
33042590 TTACAGTTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 6 0.24
23 19 0.76
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.46
Consensus pattern (22 bp):
ATGTATAATATATTAATTACAA
Found at i:33042580 original size:23 final size:23
Alignment explanation
Indices: 33042546--33042589 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
33042536 AAGTATGTAT
33042546 ATATATTAATTACAAATGTATAC
1 ATATATTAATTACAAATGTATAC
* *
33042569 ATATATTTATTACATATGTAT
1 ATATATTAATTACAAATGTAT
33042590 TTACAGTTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (23 bp):
ATATATTAATTACAAATGTATAC
Found at i:33044379 original size:18 final size:20
Alignment explanation
Indices: 33044355--33044404 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
33044345 TGAATGCAAT
33044355 TAAATATTATTAT-ATTTGA
1 TAAATATTATTATAATTTGA
*
33044374 -AAATATAAATT-TAATTTGA
1 TAAATAT-TATTATAATTTGA
33044393 TAAATATTATTA
1 TAAATATTATTA
33044405 ATATGTGTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
18 7 0.28
19 12 0.48
20 6 0.24
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (20 bp):
TAAATATTATTATAATTTGA
Found at i:33047366 original size:26 final size:24
Alignment explanation
Indices: 33047300--33047367 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 24
33047290 TATTGAAAGG
33047300 TTTTAAAAA-AATATAAATAATTTTA
1 TTTTAAAAATAA-AT-AATAATTTTA
*
33047325 TTTTAAAGAATAAATATTAATTTTAAA
1 TTTTAAA-AATAAATAATAATTTT--A
33047352 TTTTAAAAATAAATAA
1 TTTTAAAAATAAATAA
33047368 ATACAAATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
25 15 0.41
26 12 0.32
27 10 0.27
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (24 bp):
TTTTAAAAATAAATAATAATTTTA
Found at i:33048290 original size:4 final size:4
Alignment explanation
Indices: 33048267--33048305 Score: 53
Period size: 4 Copynumber: 9.8 Consensus size: 4
33048257 AGGTGATCTT
*
33048267 TTTA TCTTA TTTA CTTA TTTA TTTA TTTA TTT- TTTA TTT
1 TTTA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
33048306 TTGAATATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
3 3 0.10
4 24 0.77
5 4 0.13
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:33054700 original size:18 final size:18
Alignment explanation
Indices: 33054671--33054718 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
33054661 AAGAAAACAT
*
33054671 TTTGAAATTGAATAATGA
1 TTTGAAAATGAATAATGA
* *
33054689 TTTGTAAATGAATAATGT
1 TTTGAAAATGAATAATGA
33054707 TTTGAAAATGAA
1 TTTGAAAATGAA
33054719 CGACACGATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.44, C:0.00, G:0.17, T:0.40
Consensus pattern (18 bp):
TTTGAAAATGAATAATGA
Found at i:33058471 original size:11 final size:11
Alignment explanation
Indices: 33058450--33058482 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
33058440 TTTTATCTTA
33058450 TTTACTTATTTT
1 TTTA-TTATTTT
33058462 TTTATTATTTT
1 TTTATTATTTT
33058473 TTTATT-TTTT
1 TTTATTATTTT
33058483 GAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 4 0.19
11 13 0.62
12 4 0.19
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTATTATTTT
Found at i:33061213 original size:24 final size:23
Alignment explanation
Indices: 33061170--33061215 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
33061160 ATAAAACATA
*
33061170 ATCAAATAAAAAAATTAAATTAT
1 ATCAAATAAAAAAATGAAATTAT
33061193 ATCAAATTAAAATAAA-GAAATTA
1 ATCAAA-TAAAA-AAATGAAATTA
33061216 AAATTTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 6 0.30
24 11 0.55
25 3 0.15
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.28
Consensus pattern (23 bp):
ATCAAATAAAAAAATGAAATTAT
Found at i:33061644 original size:14 final size:14
Alignment explanation
Indices: 33061604--33061651 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
33061594 AAAATTTATT
33061604 TATTTATTATATAA
1 TATTTATTATATAA
*
33061618 -ATTT-TTAAAATAA
1 TATTTATT-ATATAA
33061631 TATTTATTATATAA
1 TATTTATTATATAA
*
33061645 AATTTAT
1 TATTTAT
33061652 CTTTTGTCCC
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
12 2 0.07
13 9 0.32
14 15 0.54
15 2 0.07
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
TATTTATTATATAA
Found at i:33074609 original size:34 final size:34
Alignment explanation
Indices: 33074565--33074630 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
33074555 AAATAATCTC
*
33074565 AGTTTGGGCCTAAGCCC-TTTTCAGTATCAGTATT
1 AGTTTAGGCCTAAGCCCATTTT-AGTATCAGTATT
*
33074599 AGTTTAGGCCTAAGCCCATTTTAGTATGAGTA
1 AGTTTAGGCCTAAGCCCATTTTAGTATCAGTA
33074631 AGCATTAGGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 25 0.86
35 4 0.14
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.36
Consensus pattern (34 bp):
AGTTTAGGCCTAAGCCCATTTTAGTATCAGTATT
Found at i:33074643 original size:34 final size:34
Alignment explanation
Indices: 33074570--33074643 Score: 82
Period size: 34 Copynumber: 2.2 Consensus size: 34
33074560 ATCTCAGTTT
*
33074570 GGGCCTAAGCCCTTTTCAGTATCAGTATTAGTTTA
1 GGGCCTAAGCCCTTTTCAGTATCAGTA-TAGATTA
*
33074605 -GGCCTAAGCCCATTTT-AGTATGAGTA-AGCATTA
1 GGGCCTAAGCCC-TTTTCAGTATCAGTATAG-ATTA
33074638 GGGCCT
1 GGGCCT
33074644 TAGTCCATCA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
32 2 0.06
33 3 0.09
34 25 0.74
35 4 0.12
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.32
Consensus pattern (34 bp):
GGGCCTAAGCCCTTTTCAGTATCAGTATAGATTA
Found at i:33075924 original size:20 final size:20
Alignment explanation
Indices: 33075880--33075924 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
33075870 TTTGATAAAC
33075880 TCCC-CCCAATCCCTTAACT
1 TCCCTCCCAATCCCTTAACT
*
33075899 T-TCTCCCATATCCC-TAACT
1 TCCCTCCCA-ATCCCTTAACT
33075918 TCCCTCC
1 TCCCTCC
33075925 TAAAAAACCG
Statistics
Matches: 21, Mismatches: 2, Indels: 5
0.75 0.07 0.18
Matches are distributed among these distances:
18 1 0.05
19 11 0.52
20 9 0.43
ACGTcount: A:0.18, C:0.51, G:0.00, T:0.31
Consensus pattern (20 bp):
TCCCTCCCAATCCCTTAACT
Found at i:33079063 original size:43 final size:42
Alignment explanation
Indices: 33078947--33079092 Score: 145
Period size: 42 Copynumber: 3.5 Consensus size: 42
33078937 GTTACTCCGT
* * * * * *
33078947 GGAATCAACACTTAGCAACCAAC-TTATATTCAATGATACAG
1 GGAATCAGCACTTAGCAACCACCTTTACAATCAATAATACGG
* * *
33078988 GGAATCATCACATAGTAACC-CCTTTCACAATCAAGT-ATACGG
1 GGAATCAGCACTTAGCAACCACCTTT-ACAATCAA-TAATACGG
* *
33079030 TGGAATCAGCACTTAGCAACCACCTTTAGAATCAATAATTCGG
1 -GGAATCAGCACTTAGCAACCACCTTTACAATCAATAATACGG
33079073 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
33079093 CGTCGAGGAA
Statistics
Matches: 87, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
40 1 0.01
41 19 0.22
42 32 0.37
43 30 0.34
44 5 0.06
ACGTcount: A:0.37, C:0.25, G:0.15, T:0.23
Consensus pattern (42 bp):
GGAATCAGCACTTAGCAACCACCTTTACAATCAATAATACGG
Found at i:33079144 original size:41 final size:41
Alignment explanation
Indices: 33079099--33079242 Score: 252
Period size: 41 Copynumber: 3.5 Consensus size: 41
33079089 AACCCGTCGA
*
33079099 GGAATCTGCACTTAGCAACCCCTTCTTGATCAGTGATTCGG
1 GGAATCTGCACTTAGCAACCCCTTTTTGATCAGTGATTCGG
*
33079140 GGAATCTGCACTTAGCAACCCCTTTTTGATTAGTGATTCGG
1 GGAATCTGCACTTAGCAACCCCTTTTTGATCAGTGATTCGG
* *
33079181 GGAATCTCCACTTAGCAACCCCTTTTTGATCAGTGATTCAG
1 GGAATCTGCACTTAGCAACCCCTTTTTGATCAGTGATTCGG
33079222 GGAATCTGCACTTAGCAACCC
1 GGAATCTGCACTTAGCAACCC
33079243 TTTACATTCA
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 97 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (41 bp):
GGAATCTGCACTTAGCAACCCCTTTTTGATCAGTGATTCGG
Found at i:33079153 original size:67 final size:68
Alignment explanation
Indices: 33079031--33079160 Score: 192
Period size: 67 Copynumber: 1.9 Consensus size: 68
33079021 AGTATACGGT
33079031 GGAATCAGCACTTAGCAACCACCTTTAGAATCAATAATTCGGGGAATCAGCACTTAGCAACCCGT
1 GGAATCAGCACTTAGCAACCACCTTTAGAATCAATAATTCGGGGAATCAGCACTTAGCAACCCGT
33079096 CGA
66 CGA
* * * * *
33079099 GGAATCTGCACTTAGCAACC-CCTTCTTG-ATCAGTGATTCGGGGAATCTGCACTTAGCAACCC
1 GGAATCAGCACTTAGCAACCACCTT-TAGAATCAATAATTCGGGGAATCAGCACTTAGCAACCC
33079161 CTTTTTGATT
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
67 35 0.62
68 21 0.38
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (68 bp):
GGAATCAGCACTTAGCAACCACCTTTAGAATCAATAATTCGGGGAATCAGCACTTAGCAACCCGT
CGA
Found at i:33081884 original size:12 final size:12
Alignment explanation
Indices: 33081867--33081899 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
33081857 GTTCACAAAT
33081867 AAAAACATAAAG
1 AAAAACATAAAG
33081879 AAAAACAT-AAG
1 AAAAACATAAAG
33081890 -AAAACATAAA
1 AAAAACATAAA
33081900 AATAACTAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 7 0.35
11 5 0.25
12 8 0.40
ACGTcount: A:0.76, C:0.09, G:0.06, T:0.09
Consensus pattern (12 bp):
AAAAACATAAAG
Found at i:33091685 original size:26 final size:27
Alignment explanation
Indices: 33091655--33091827 Score: 228
Period size: 27 Copynumber: 6.6 Consensus size: 27
33091645 GGGTATAACA
*
33091655 GTCATTTTACCCTAT-GGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
33091681 ATCATTTTA-CCTA-CGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
33091706 GTCATTTTACCCCATGGGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
33091733 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
33091760 GTCATTTTACCCTAT-GGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
33091786 ATCATTTTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
33091813 GTTATTTTACCCTAT
1 GTCATTTTACCCTAT
33091828 TTTAGGGTAT
Statistics
Matches: 128, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
25 21 0.16
26 35 0.27
27 72 0.56
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:33091736 original size:27 final size:26
Alignment explanation
Indices: 33091626--33091827 Score: 221
Period size: 27 Copynumber: 7.7 Consensus size: 26
33091616 AAGGCCATAA
* **
33091626 CAGTCATTTCATCTCCTA-GGGGTATAA
1 CAGTCATTTTA-C-CCTATGGGGTATTT
33091653 CAGTCATTTTACCCTATGGGGTATTT
1 CAGTCATTTTACCCTATGGGGTATTT
* *
33091679 CAATCATTTTA-CCTACGGGGTATTT
1 CAGTCATTTTACCCTATGGGGTATTT
** *
33091704 TGGTCATTTTACCCCATGGGGGTATTT
1 CAGTCATTTTACCCTAT-GGGGTATTT
33091731 CAGTCATTTTACCCTATGGGGGTATTT
1 CAGTCATTTTACCCTAT-GGGGTATTT
*
33091758 CGGTCATTTTACCCTATGGGGTATTT
1 CAGTCATTTTACCCTATGGGGTATTT
*
33091784 -TGATCATTTTACCCTATAGGGGTATTT
1 CAG-TCATTTTACCCTAT-GGGGTATTT
* *
33091811 CGGTTATTTTACCCTAT
1 CAGTCATTTTACCCTAT
33091828 TTTAGGGTAT
Statistics
Matches: 152, Mismatches: 17, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
25 26 0.17
26 44 0.29
27 81 0.53
28 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (26 bp):
CAGTCATTTTACCCTATGGGGTATTT
Found at i:33091806 original size:53 final size:53
Alignment explanation
Indices: 33091655--33091827 Score: 242
Period size: 53 Copynumber: 3.3 Consensus size: 53
33091645 GGGTATAACA
* * *
33091655 GTCATTTTACCCTATGGGGTATTTCAATCATTTTA-CCTA-CGGGGTATTTTG
1 GTCATTTTACCCTATGGGGTATTTTAATCATTTTACCCTATAGGGGTATTTCG
* * * *
33091706 GTCATTTTACCCCATGGGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTTAATCATTTTACCCTATAGGGGTATTTCG
*
33091760 GTCATTTTACCCTATGGGGTATTTTGATCATTTTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGTATTTTAATCATTTTACCCTATAGGGGTATTTCG
*
33091813 GTTATTTTACCCTAT
1 GTCATTTTACCCTAT
33091828 TTTAGGGTAT
Statistics
Matches: 109, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
51 14 0.13
52 19 0.17
53 52 0.48
54 24 0.22
ACGTcount: A:0.18, C:0.18, G:0.20, T:0.43
Consensus pattern (53 bp):
GTCATTTTACCCTATGGGGTATTTTAATCATTTTACCCTATAGGGGTATTTCG
Found at i:33101083 original size:27 final size:27
Alignment explanation
Indices: 33101047--33101106 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
33101037 CTGACGACCT
33101047 CAACTCGCCAAGCCCT-TTGGCGAACAC
1 CAACTCGCCAAGCCCTCTT-GCGAACAC
* * *
33101074 CAACTTGCCAGGCCCTCTTGTGAACAC
1 CAACTCGCCAAGCCCTCTTGCGAACAC
33101101 CAACTC
1 CAACTC
33101107 TCTAGGCCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 26 0.93
28 2 0.07
ACGTcount: A:0.25, C:0.40, G:0.17, T:0.18
Consensus pattern (27 bp):
CAACTCGCCAAGCCCTCTTGCGAACAC
Found at i:33104857 original size:11 final size:11
Alignment explanation
Indices: 33104825--33104883 Score: 50
Period size: 11 Copynumber: 5.2 Consensus size: 11
33104815 AGAAAAGAGA
*
33104825 GAATGATGAAT
1 GAATGAGGAAT
33104836 G-ATGA-GAAT
1 GAATGAGGAAT
33104845 GAATGAGGAAT
1 GAATGAGGAAT
*
33104856 GATTGAGGGATGAT
1 GAATGA-GGA--AT
33104870 GAATGAAGGAAT
1 GAATG-AGGAAT
33104882 GA
1 GA
33104884 TAGGGTCTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
9 5 0.12
10 8 0.20
11 10 0.25
12 7 0.17
14 9 0.22
15 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.36, T:0.22
Consensus pattern (11 bp):
GAATGAGGAAT
Found at i:33119680 original size:31 final size:32
Alignment explanation
Indices: 33119640--33119702 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 32
33119630 AACAACTCAG
33119640 TGACTTTAAAAAAAAACCTTTAAATAGTTCAA
1 TGACTTTAAAAAAAAACCTTTAAATAGTTCAA
** * *
33119672 TGAC-TTAAATGAAAGCTTTTAAATAGTTCAA
1 TGACTTTAAAAAAAAACCTTTAAATAGTTCAA
33119703 AACTAAATTG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
31 23 0.85
32 4 0.15
ACGTcount: A:0.46, C:0.11, G:0.10, T:0.33
Consensus pattern (32 bp):
TGACTTTAAAAAAAAACCTTTAAATAGTTCAA
Found at i:33120061 original size:21 final size:19
Alignment explanation
Indices: 33120027--33120070 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
33120017 CTACAAAATG
*
33120027 TAATAATATATTTAAAATAT
1 TAATAATAGATTT-AAATAT
*
33120047 TAATACATAGATTTAACTAT
1 TAATA-ATAGATTTAAATAT
33120067 TAAT
1 TAAT
33120071 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (19 bp):
TAATAATAGATTTAAATAT
Found at i:33121124 original size:20 final size:22
Alignment explanation
Indices: 33121099--33121139 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
33121089 CCTTTGTACA
33121099 TATATAA-ACTAT-TAATATAT
1 TATATAACACTATATAATATAT
*
33121119 TATATAACATTATATAATATA
1 TATATAACACTATATAATATA
33121140 GTAGGACAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 4 0.22
22 7 0.39
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (22 bp):
TATATAACACTATATAATATAT
Found at i:33121261 original size:20 final size:19
Alignment explanation
Indices: 33121223--33121272 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
33121213 TAATAATTAA
33121223 TATATTATGT-ATTACTAT
1 TATATTATGTAATTACTAT
*
33121241 TATATTATGTAATATAGTAT
1 TATATTATGTAAT-TACTAT
* *
33121261 TAAATAATGTAA
1 TATATTATGTAA
33121273 GTATTAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 10 0.37
19 2 0.07
20 15 0.56
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.48
Consensus pattern (19 bp):
TATATTATGTAATTACTAT
Found at i:33123632 original size:45 final size:45
Alignment explanation
Indices: 33123564--33123658 Score: 174
Period size: 45 Copynumber: 2.1 Consensus size: 45
33123554 ACTACATAAC
*
33123564 GAGT-TGGTCGAACAGAGCTTCGACAAACCAGTGGAGTCATGACG
1 GAGTATGGTCGAACAGAGCTTCGACAAACCAATGGAGTCATGACG
33123608 GAGTATGGTCGAACAGAGCTTCGACAAACCAATGGAGTCATGACG
1 GAGTATGGTCGAACAGAGCTTCGACAAACCAATGGAGTCATGACG
33123653 GAGTAT
1 GAGTAT
33123659 ATGAGAGGGG
Statistics
Matches: 49, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 4 0.08
45 45 0.92
ACGTcount: A:0.32, C:0.19, G:0.31, T:0.19
Consensus pattern (45 bp):
GAGTATGGTCGAACAGAGCTTCGACAAACCAATGGAGTCATGACG
Found at i:33159496 original size:41 final size:40
Alignment explanation
Indices: 33159440--33159546 Score: 133
Period size: 41 Copynumber: 2.6 Consensus size: 40
33159430 ATAGTTAATT
*
33159440 ATACCCTGAATTGCACATACATGCCCCTGTTTGTACTTCG
1 ATACCCTGAATTGCACATACGTGCCCCTGTTTGTACTTCG
* * *
33159480 ATACCCATGAATTGCACATACGTGGCCTTGTTTGTACTTTG
1 ATACCC-TGAATTGCACATACGTGCCCCTGTTTGTACTTCG
* * *
33159521 GTACCCCTAAATTGCCCATACGTGCC
1 ATA-CCCTGAATTGCACATACGTGCC
33159547 TATTTACACT
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
40 6 0.11
41 48 0.84
42 3 0.05
ACGTcount: A:0.22, C:0.29, G:0.17, T:0.32
Consensus pattern (40 bp):
ATACCCTGAATTGCACATACGTGCCCCTGTTTGTACTTCG
Found at i:33172567 original size:41 final size:41
Alignment explanation
Indices: 33172522--33172667 Score: 188
Period size: 41 Copynumber: 3.6 Consensus size: 41
33172512 AGTTAATTAT
* *
33172522 ACCCTGAATTGCACATATGTGCCTCTGTTTGCACTTTGGTA
1 ACCCTGAATTGCACATATGTGCCTCTGTTTGTACTTCGGTA
* **
33172563 ACCCTGAATTGCCCATATGTGCC-CTTGTTTGTACTTCAATA
1 ACCCTGAATTGCACATATGTGCCTC-TGTTTGTACTTCGGTA
* *
33172604 CCCCTGAATTGCACATAAGTGCCAT-TGTTTGTACTTCGGTA
1 ACCCTGAATTGCACATATGTGCC-TCTGTTTGTACTTCGGTA
*
33172645 TCCCTGAATTGCACATATGTGCC
1 ACCCTGAATTGCACATATGTGCC
33172668 CTATTTATAC
Statistics
Matches: 90, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
40 1 0.01
41 89 0.99
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (41 bp):
ACCCTGAATTGCACATATGTGCCTCTGTTTGTACTTCGGTA
Found at i:33175009 original size:20 final size:20
Alignment explanation
Indices: 33174986--33175029 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
33174976 CCACTTTCCG
33174986 TTTCTTAGAACCATTTACCA
1 TTTCTTAGAACCATTTACCA
* * *
33175006 TTTCTTATATCCATTTGCCA
1 TTTCTTAGAACCATTTACCA
33175026 TTTC
1 TTTC
33175030 ATATATCCAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.23, C:0.25, G:0.05, T:0.48
Consensus pattern (20 bp):
TTTCTTAGAACCATTTACCA
Found at i:33175034 original size:20 final size:20
Alignment explanation
Indices: 33174996--33175041 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
33174986 TTTCTTAGAA
*
33174996 CCATTTACCATTTCTTATAT
1 CCATTTACCATTTCATATAT
*
33175016 CCATTTGCCATTTCATATAT
1 CCATTTACCATTTCATATAT
33175036 CCATTT
1 CCATTT
33175042 CCACCCACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.02, T:0.48
Consensus pattern (20 bp):
CCATTTACCATTTCATATAT
Found at i:33175118 original size:24 final size:24
Alignment explanation
Indices: 33175088--33175154 Score: 91
Period size: 24 Copynumber: 2.8 Consensus size: 24
33175078 GCAAGATAAC
**
33175088 AATGCTCACACGAGCTATGAGTAT
1 AATGCTCACACGAGCTATGAAAAT
*
33175112 AATGCTCACAC-AGGCTGTGAAAAT
1 AATGCTCACACGA-GCTATGAAAAT
33175136 AATGCTCACACGAGCTATG
1 AATGCTCACACGAGCTATG
33175155 GATCGAGATG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
23 1 0.03
24 35 0.95
25 1 0.03
ACGTcount: A:0.34, C:0.22, G:0.21, T:0.22
Consensus pattern (24 bp):
AATGCTCACACGAGCTATGAAAAT
Found at i:33180163 original size:21 final size:21
Alignment explanation
Indices: 33180137--33180189 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
33180127 AGAAGGTGAT
33180137 GTCATCGTCCTCCATCACCTC
1 GTCATCGTCCTCCATCACCTC
33180158 GTCATCGTCCTCCATCACCTC
1 GTCATCGTCCTCCATCACCTC
*
33180179 -TCATCCTCCTC
1 GTCATCGTCCTC
33180190 TTCTTCATCT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 10 0.32
21 21 0.68
ACGTcount: A:0.13, C:0.49, G:0.08, T:0.30
Consensus pattern (21 bp):
GTCATCGTCCTCCATCACCTC
Found at i:33181384 original size:9 final size:9
Alignment explanation
Indices: 33181372--33181397 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
33181362 AATAGCTAAA
33181372 ATAACAAAG
1 ATAACAAAG
33181381 ATAACAAAG
1 ATAACAAAG
33181390 ATAACAAA
1 ATAACAAA
33181398 TGCAAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.69, C:0.12, G:0.08, T:0.12
Consensus pattern (9 bp):
ATAACAAAG
Found at i:33195071 original size:46 final size:46
Alignment explanation
Indices: 33194959--33195071 Score: 129
Period size: 46 Copynumber: 2.5 Consensus size: 46
33194949 GATGCCATAA
* *
33194959 TGTCTTTCAACTATGGCCTTATTCATTTACCATCATATTTCCACAG
1 TGTCTTTCAACTATGGTCTTATTCATTTACCATCATATTACCACAG
* * * * * *
33195005 TGTCTTTCAACCATGCTCTTATTCATTT-CTCGTCATGTTACTATAG
1 TGTCTTTCAACTATGGTCTTATTCATTTAC-CATCATATTACCACAG
*
33195051 TGTCTTTCAATTATGGTCTTA
1 TGTCTTTCAACTATGGTCTTA
33195072 CACATCTTAA
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
45 1 0.02
46 54 0.98
ACGTcount: A:0.21, C:0.23, G:0.11, T:0.45
Consensus pattern (46 bp):
TGTCTTTCAACTATGGTCTTATTCATTTACCATCATATTACCACAG
Found at i:33195113 original size:45 final size:45
Alignment explanation
Indices: 33195052--33195431 Score: 399
Period size: 45 Copynumber: 8.4 Consensus size: 45
33195042 TTACTATAGT
** * * * * *
33195052 GTCTTTCAATTATGGTCTTACACATCTTAATTGTGATACCATAAC
1 GTCTTTCAGCTATGGTCTTACTCGTCTGAATCGTGATGCCATAAC
* * * *
33195097 GCCTTT-TGACTATGGTCTTACTGGTCTGAATCGTGATGCCATAAT
1 GTCTTTCAG-CTATGGTCTTACTCGTCTGAATCGTGATGCCATAAC
* * *
33195142 GGCTTTCAGCTATGGTCTTACTCGTTTGAATTGTGATGCCATAAC
1 GTCTTTCAGCTATGGTCTTACTCGTCTGAATCGTGATGCCATAAC
33195187 GTCTTTCAGCTATGGTCTTACTCGTCTGAATCGTGATGCCATAAC
1 GTCTTTCAGCTATGGTCTTACTCGTCTGAATCGTGATGCCATAAC
* * * *
33195232 GTCTTTCAACTATGGTCTTACTCATTTGAATCATGATGCCATAAC
1 GTCTTTCAGCTATGGTCTTACTCGTCTGAATCGTGATGCCATAAC
* * * *
33195277 ATCTTTCAGCTATGGTCTTACTCGTTTGAATTGTGGTGCCATAAC
1 GTCTTTCAGCTATGGTCTTACTCGTCTGAATCGTGATGCCATAAC
* * * * *
33195322 ATCTTTCAACTATGGCCTTACTCATCTGAATCGTGATGTCATAAC
1 GTCTTTCAGCTATGGTCTTACTCGTCTGAATCGTGATGCCATAAC
* * * * *
33195367 GTCTTTCAGTTATTGTCTTACTCATTTCTG-GT-ATGATGCCAT-AC
1 GTCTTTCAGCTATGGTCTTACTC--GTCTGAATCGTGATGCCATAAC
*
33195411 TGTCTTTCAACTATGGTCTTA
1 -GTCTTTCAGCTATGGTCTTA
33195432 TTTATTTCTA
Statistics
Matches: 281, Mismatches: 49, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
44 2 0.01
45 273 0.97
46 2 0.01
47 4 0.01
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.39
Consensus pattern (45 bp):
GTCTTTCAGCTATGGTCTTACTCGTCTGAATCGTGATGCCATAAC
Found at i:33195207 original size:90 final size:90
Alignment explanation
Indices: 33195052--33195431 Score: 446
Period size: 90 Copynumber: 4.2 Consensus size: 90
33195042 TTACTATAGT
* * * * * *
33195052 GTCTTTCAATTATGGTCTTACACATCTT-AATTGTGATACCATAACGCCTTT-TGACTATGGTCT
1 GTCTTTCAACTATGGTCTTACTCAT-TTGAATCGTGATGCCATAACGTCTTTCAG-CTATGGTCT
* *
33195115 TACTGGTCTGAATCGTGATGCCATAAT
64 TACTCGTCTGAATCGTGATGCCATAAC
* * * *
33195142 GGCTTTCAGCTATGGTCTTACTCGTTTGAATTGTGATGCCATAACGTCTTTCAGCTATGGTCTTA
1 GTCTTTCAACTATGGTCTTACTCATTTGAATCGTGATGCCATAACGTCTTTCAGCTATGGTCTTA
33195207 CTCGTCTGAATCGTGATGCCATAAC
66 CTCGTCTGAATCGTGATGCCATAAC
* *
33195232 GTCTTTCAACTATGGTCTTACTCATTTGAATCATGATGCCATAACATCTTTCAGCTATGGTCTTA
1 GTCTTTCAACTATGGTCTTACTCATTTGAATCGTGATGCCATAACGTCTTTCAGCTATGGTCTTA
* * *
33195297 CTCGTTTGAATTGTGGTGCCATAAC
66 CTCGTCTGAATCGTGATGCCATAAC
* * * * * *
33195322 ATCTTTCAACTATGGCCTTACTCATCTGAATCGTGATGTCATAACGTCTTTCAGTTATTGTCTTA
1 GTCTTTCAACTATGGTCTTACTCATTTGAATCGTGATGCCATAACGTCTTTCAGCTATGGTCTTA
* * *
33195387 CTCATTTCTG-GT-ATGATGCCAT-AC
66 CTC--GTCTGAATCGTGATGCCATAAC
33195411 TGTCTTTCAACTATGGTCTTA
1 -GTCTTTCAACTATGGTCTTA
33195432 TTTATTTCTA
Statistics
Matches: 251, Mismatches: 34, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
89 4 0.02
90 242 0.96
91 2 0.01
92 3 0.01
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.39
Consensus pattern (90 bp):
GTCTTTCAACTATGGTCTTACTCATTTGAATCGTGATGCCATAACGTCTTTCAGCTATGGTCTTA
CTCGTCTGAATCGTGATGCCATAAC
Found at i:33195229 original size:135 final size:135
Alignment explanation
Indices: 33195052--33195431 Score: 469
Period size: 135 Copynumber: 2.8 Consensus size: 135
33195042 TTACTATAGT
* * * * * * **
33195052 GTCTTTCAATTATGGTCTTACACATCTTAATTGTGATACCATAACGCCTTTTGACTATGGTCTTA
1 GTCTTTCAACTATGGTCTTACTCATCTGAATCGTGATGCCATAACGTCTTTCAACTATGGTCTTA
** * **
33195117 CTGGTCTGAATCGTGATGCCATAATGGCTTTCAGCTATGGTCTTACTCGTTTGAATTGTGATGCC
66 CTCATCTGAATCATGATGCCATAACAGCTTTCAGCTATGGTCTTACTCGTTTGAATTGTGATGCC
33195182 ATAAC
131 ATAAC
* *
33195187 GTCTTTCAGCTATGGTCTTACTCGTCTGAATCGTGATGCCATAACGTCTTTCAACTATGGTCTTA
1 GTCTTTCAACTATGGTCTTACTCATCTGAATCGTGATGCCATAACGTCTTTCAACTATGGTCTTA
* * *
33195252 CTCATTTGAATCATGATGCCATAACATCTTTCAGCTATGGTCTTACTCGTTTGAATTGTGGTGCC
66 CTCATCTGAATCATGATGCCATAACAGCTTTCAGCTATGGTCTTACTCGTTTGAATTGTGATGCC
33195317 ATAAC
131 ATAAC
* * * ** *
33195322 ATCTTTCAACTATGGCCTTACTCATCTGAATCGTGATGTCATAACGTCTTTCAGTTATTGTCTTA
1 GTCTTTCAACTATGGTCTTACTCATCTGAATCGTGATGCCATAACGTCTTTCAACTATGGTCTTA
* * *
33195387 CTCATTTCTG-GT-ATGATGCCAT-ACTGTCTTTCAACTATGGTCTTA
66 CTCA--TCTGAATCATGATGCCATAACAG-CTTTCAGCTATGGTCTTA
33195432 TTTATTTCTA
Statistics
Matches: 211, Mismatches: 31, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
134 2 0.01
135 205 0.97
136 1 0.00
137 3 0.01
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.39
Consensus pattern (135 bp):
GTCTTTCAACTATGGTCTTACTCATCTGAATCGTGATGCCATAACGTCTTTCAACTATGGTCTTA
CTCATCTGAATCATGATGCCATAACAGCTTTCAGCTATGGTCTTACTCGTTTGAATTGTGATGCC
ATAAC
Found at i:33195439 original size:45 final size:45
Alignment explanation
Indices: 33195223--33195484 Score: 139
Period size: 45 Copynumber: 5.8 Consensus size: 45
33195213 TGAATCGTGA
* *
33195223 TGCCATAAC-GTCTTTCAACTATGGTCTTACTCATTT-GAATCAT-G
1 TGCCAT-ACTGTCTTTCAACTATGGTCTTACTCATTTCTAGT-ATAG
* * * ** * * *
33195267 ATGCCATAAC-ATCTTTCAGCTATGGTCTTACTCGTTTGAATTGTGG
1 -TGCCAT-ACTGTCTTTCAACTATGGTCTTACTCATTTCTAGTATAG
* * * *
33195313 TGCCATAAC-ATCTTTCAACTATGGCCTTACTCA--TCT-GAATCGTG
1 TGCCAT-ACTGTCTTTCAACTATGGTCTTACTCATTTCTAGTAT--AG
* ** * *
33195357 ATGTCATAAC-GTCTTTCAGTTATTGTCTTACTCATTTCTGGTAT-G
1 -TGCCAT-ACTGTCTTTCAACTATGGTCTTACTCATTTCTAGTATAG
* *
33195402 ATGCCATACTGTCTTTCAACTATGGTCTTATTTATTTCTAGTATAG
1 -TGCCATACTGTCTTTCAACTATGGTCTTACTCATTTCTAGTATAG
* * * *
33195448 TGCCATAGTATATTTCAACTATGGTCTTAGTCATTTC
1 TGCCATACTGTCTTTCAACTATGGTCTTACTCATTTC
33195485 CTTCAAACCA
Statistics
Matches: 173, Mismatches: 34, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 3 0.02
45 158 0.91
46 4 0.02
47 3 0.02
48 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.41
Consensus pattern (45 bp):
TGCCATACTGTCTTTCAACTATGGTCTTACTCATTTCTAGTATAG
Found at i:33195451 original size:135 final size:135
Alignment explanation
Indices: 33195053--33195481 Score: 407
Period size: 135 Copynumber: 3.2 Consensus size: 135
33195043 TACTATAGTG
* * * * * * **
33195053 TCTTTCAATTATGGTCTTACACATCTTAATTGTGATACCATAACGCCTTTTGACTATGGTCTTAC
1 TCTTTCAACTATGGTCTTACTCATCTGAATCGTGATGCCATAACGTCTTTCAACTATGGTCTTAC
** * * *** * * * * *
33195118 TGGTCTGAATCGTGATGCCATAATGGCTTTCAGCTATGGTCTTACTCGTTTGAATTGT-GATGCC
66 TCATTTGAATCATGATGCCATAACATCTTTCAACTATGGTCTTACTCATTTCAAGTATAG-TGCC
*
33195182 ATAACG
130 ATAACA
* *
33195188 TCTTTCAGCTATGGTCTTACTCGTCTGAATCGTGATGCCATAACGTCTTTCAACTATGGTCTTAC
1 TCTTTCAACTATGGTCTTACTCATCTGAATCGTGATGCCATAACGTCTTTCAACTATGGTCTTAC
* * * * * *
33195253 TCATTTGAATCATGATGCCATAACATCTTTCAGCTATGGTCTTACTCGTTTGAATTGTGGTGCCA
66 TCATTTGAATCATGATGCCATAACATCTTTCAACTATGGTCTTACTCATTTCAAGTATAGTGCCA
33195318 TAACA
131 TAACA
* * ** *
33195323 TCTTTCAACTATGGCCTTACTCATCTGAATCGTGATGTCATAACGTCTTTCAGTTATTGTCTTAC
1 TCTTTCAACTATGGTCTTACTCATCTGAATCGTGATGCCATAACGTCTTTCAACTATGGTCTTAC
* * * * *
33195388 TCATTTCTG-GT-ATGATGCCAT-ACTGTCTTTCAACTATGGTCTTATTTATTTCTAGTATAGTG
66 TCA-TT-TGAATCATGATGCCATAAC-ATCTTTCAACTATGGTCTTACTCATTTCAAGTATAGTG
**
33195450 CCATAGTA
128 CCATAACA
* *
33195458 TATTTCAACTATGGTCTTAGTCAT
1 TCTTTCAACTATGGTCTTACTCAT
33195482 TTCCTTCAAA
Statistics
Matches: 249, Mismatches: 41, Indels: 8
0.84 0.14 0.03
Matches are distributed among these distances:
134 2 0.01
135 241 0.97
136 4 0.02
137 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.40
Consensus pattern (135 bp):
TCTTTCAACTATGGTCTTACTCATCTGAATCGTGATGCCATAACGTCTTTCAACTATGGTCTTAC
TCATTTGAATCATGATGCCATAACATCTTTCAACTATGGTCTTACTCATTTCAAGTATAGTGCCA
TAACA
Found at i:33200348 original size:30 final size:29
Alignment explanation
Indices: 33200312--33200388 Score: 100
Period size: 29 Copynumber: 2.6 Consensus size: 29
33200302 GTAGCCGAAG
* *
33200312 CCATCCCTGTTCATAATTCGATGGTCGTCA
1 CCATCCCTTTTCATAATT-GATGGTCGCCA
**
33200342 CCATCCCTTTTCATTGTTGATGGTCGCCA
1 CCATCCCTTTTCATAATTGATGGTCGCCA
*
33200371 CAATCCCTTTTCATAATT
1 CCATCCCTTTTCATAATT
33200389 TGATAGCCAA
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 25 0.62
30 15 0.38
ACGTcount: A:0.19, C:0.30, G:0.13, T:0.38
Consensus pattern (29 bp):
CCATCCCTTTTCATAATTGATGGTCGCCA
Found at i:33205981 original size:27 final size:27
Alignment explanation
Indices: 33205878--33206110 Score: 261
Period size: 27 Copynumber: 8.7 Consensus size: 27
33205868 TACCCTCGAT
* *
33205878 GGGTAAAATGACCGAAATAACCC-ATA
1 GGGTAAAATGACCGTAATACCCCTATA
* * * * *
33205904 AGGTAAAATGACTGAAATGCCCCCATA
1 GGGTAAAATGACCGTAATACCCCTATA
* * * * *
33205931 AGGTAAAATTACCATAATGCCCCTGTA
1 GGGTAAAATGACCGTAATACCCCTATA
*
33205958 GGGTAAAATGACTGTAATACCCCTATA
1 GGGTAAAATGACCGTAATACCCCTATA
* * *
33205985 GGTTAAATTGACCGTAATACCCCTGTA
1 GGGTAAAATGACCGTAATACCCCTATA
* *
33206012 GGGTAAAATGACCGTAATACCCTTTTA
1 GGGTAAAATGACCGTAATACCCCTATA
* *
33206039 GGGTAAAATAACTGTAATACCCCTATA
1 GGGTAAAATGACCGTAATACCCCTATA
* *
33206066 GGGTAAAATTACCGTAATACCCCTACA
1 GGGTAAAATGACCGTAATACCCCTATA
33206093 GGGTAAAATGACCGTAAT
1 GGGTAAAATGACCGTAAT
33206111 GCCCTGGTGG
Statistics
Matches: 174, Mismatches: 32, Indels: 1
0.84 0.15 0.00
Matches are distributed among these distances:
26 19 0.11
27 155 0.89
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (27 bp):
GGGTAAAATGACCGTAATACCCCTATA
Found at i:33206008 original size:54 final size:54
Alignment explanation
Indices: 33205860--33206130 Score: 264
Period size: 54 Copynumber: 5.1 Consensus size: 54
33205850 TCCATATCTG
* * * * * *
33205860 GACTGAAATACCCTCGAT-GGGTAAAATGACCGAAATAACCC-ATAAGGTAAAAT
1 GACTGTAATACCC-CTATAGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAAT
* * * * * * *
33205913 GACTGAAATGCCCCCATAAGGTAAAATTACCATAATGCCCCTGTAGGGTAAAAT
1 GACTGTAATACCCCTATAGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAAT
* *
33205967 GACTGTAATACCCCTATAGGTTAAATTGACCGTAATACCCCTGTAGGGTAAAAT
1 GACTGTAATACCCCTATAGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAAT
* * * * * *
33206021 GACCGTAATACCCTTTTAGGGTAAAATAACTGTAATACCCCTATAGGGTAAAAT
1 GACTGTAATACCCCTATAGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAAT
* * * *
33206075 TACCGTAATACCCCTACAGGGTAAAATGACCGTAAT-GCCCTGGT-GGGT-AAAT
1 GACTGTAATACCCCTATAGGGTAAAATGACCGTAATACCCCT-GTAGGGTAAAAT
33206127 GACT
1 GACT
33206131 ATTTTTGCCC
Statistics
Matches: 178, Mismatches: 37, Indels: 7
0.80 0.17 0.03
Matches are distributed among these distances:
52 9 0.05
53 37 0.21
54 132 0.74
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.24
Consensus pattern (54 bp):
GACTGTAATACCCCTATAGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAAT
Found at i:33206418 original size:32 final size:32
Alignment explanation
Indices: 33206377--33206622 Score: 153
Period size: 32 Copynumber: 7.7 Consensus size: 32
33206367 GCTGCGATGC
* * *
33206377 TACTGATGGCTTCGTGCCGATCATAGTACCAT
1 TACTGATGGCTTTGTGCCAATCATAGTACCGT
* *
33206409 TACTGATGGCTTTGTACCAATTATAGTACCGT
1 TACTGATGGCTTTGTGCCAATCATAGTACCGT
* *
33206441 TACTGATGGCTTTGCGCCAATCATATTACCGT
1 TACTGATGGCTTTGTGCCAATCATAGTACCGT
* * ** * *
33206473 TAC-AATGGCTGTGTGCTGATCAT--TTCAGT
1 TACTGATGGCTTTGTGCCAATCATAGTACCGT
* ** * * *
33206502 GCTACTGATGGCTATGTATCGATCATA-TCACTGC
1 --TACTGATGGCTTTGTGCCAATCATAGT-ACCGT
* * *
33206536 CACTGATGGCTTTGTGCCGATCAT-GTTACCAT
1 TACTGATGGCTTTGTGCCAATCATAG-TACCGT
* * ** * *
33206568 TACAGATGGCTGTGTGCTGATCATA-TCACTGC
1 TACTGATGGCTTTGTGCCAATCATAGT-ACCGT
33206600 TACTGATGGCTTTGTGCCAATCA
1 TACTGATGGCTTTGTGCCAATCA
33206623 CATTATTGTA
Statistics
Matches: 163, Mismatches: 42, Indels: 18
0.73 0.19 0.08
Matches are distributed among these distances:
29 4 0.02
31 19 0.12
32 136 0.83
33 2 0.01
34 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.34
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCAATCATAGTACCGT
Found at i:33206640 original size:95 final size:95
Alignment explanation
Indices: 33206409--33206642 Score: 281
Period size: 95 Copynumber: 2.5 Consensus size: 95
33206399 ATAGTACCAT
* * * * *
33206409 TACTGATGGCTTTGTACCAATTATAGTACCGTTACTGATGGCTTTGCGCCAATCATATTACCGTT
1 TACTGATGGCTTTGTACCAATCATATTACTGCTACTGATGGCTTTGCGCCAATCATATTACCATT
* *
33206474 ACAATGGCTGTGTGCTGATCATTTCAGTGC
66 ACAATGGCTGTGTGCTGATCATATCACTGC
* * * * * * * *
33206504 TACTGATGGCTATGTATCGATCATATCACTGCCACTGATGGCTTTGTGCCGATCATGTTACCATT
1 TACTGATGGCTTTGTACCAATCATATTACTGCTACTGATGGCTTTGCGCCAATCATATTACCATT
33206569 ACAGATGGCTGTGTGCTGATCATATCACTGC
66 ACA-ATGGCTGTGTGCTGATCATATCACTGC
* * * *
33206600 TACTGATGGCTTTGTGCCAATCACATTATTG-TACTTATGGCTT
1 TACTGATGGCTTTGTACCAATCATATTACTGCTACTGATGGCTT
33206643 GTAGCCATTC
Statistics
Matches: 114, Mismatches: 24, Indels: 2
0.81 0.17 0.01
Matches are distributed among these distances:
95 65 0.57
96 49 0.43
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.36
Consensus pattern (95 bp):
TACTGATGGCTTTGTACCAATCATATTACTGCTACTGATGGCTTTGCGCCAATCATATTACCATT
ACAATGGCTGTGTGCTGATCATATCACTGC
Found at i:33206750 original size:26 final size:26
Alignment explanation
Indices: 33206692--33206744 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
33206682 GACTCTTAGC
* * *
33206692 CATTCTTACTACTGGCAGCTCTGCTG
1 CATTATTATTACTGGCAGCTATGCTG
33206718 CATTATTATTACTGGCAGCTATGCTG
1 CATTATTATTACTGGCAGCTATGCTG
33206744 C
1 C
33206745 GATATTGGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.36
Consensus pattern (26 bp):
CATTATTATTACTGGCAGCTATGCTG
Found at i:33211413 original size:32 final size:32
Alignment explanation
Indices: 33211328--33211562 Score: 276
Period size: 32 Copynumber: 7.4 Consensus size: 32
33211318 TAATGGCTAC
* **
33211328 AAGCCATAAGT-ACAGTAATATGATTAGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
** * *
33211359 AAGCCATCAGTAGTAGTGATATGA-CTGGTACA
1 AAGCCATCAGTAACAGTAATATGATC-GGCACA
* * *
33211391 AAGCCATCAGTAACGGTAATATGGTCGACACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* * *
33211423 AAGCCATCAGTAACAATAATATCATCGGCATA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
*
33211455 AAGCCATCAGTAATAGTAATATGATCGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* * *
33211487 AAGCTATCAGTAACATTAATATGATCGGTACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* *
33211519 AAGCCATCAGTAACGGTAGTATGATCGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
33211551 AAGCCATCAGTA
1 AAGCCATCAGTA
33211563 GCATTACATC
Statistics
Matches: 168, Mismatches: 33, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
31 10 0.06
32 157 0.93
33 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.22
Consensus pattern (32 bp):
AAGCCATCAGTAACAGTAATATGATCGGCACA
Found at i:33211588 original size:23 final size:26
Alignment explanation
Indices: 33211554--33211608 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
33211544 CGGCACAAAG
* * * *
33211554 CCATCAGTAGCATTACATCAAAGCTA
1 CCATCAGCAGTATCACAACAAAGCTA
33211580 CCATCAGCAGTATCACAACAAAGCTA
1 CCATCAGCAGTATCACAACAAAGCTA
33211606 CCA
1 CCA
33211609 ATAATCAGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.31, G:0.11, T:0.18
Consensus pattern (26 bp):
CCATCAGCAGTATCACAACAAAGCTA
Found at i:33211762 original size:24 final size:24
Alignment explanation
Indices: 33211735--33211816 Score: 110
Period size: 24 Copynumber: 3.4 Consensus size: 24
33211725 CCACGCTCAG
*
33211735 AATCAGTCATACCAAACACAGACA
1 AATCAATCATACCAAACACAGACA
*
33211759 AATCAATCATACCAATCACAGACA
1 AATCAATCATACCAAACACAGACA
*** *
33211783 AATCAATCATTTAAAACACAAACA
1 AATCAATCATACCAAACACAGACA
33211807 AATCAATCAT
1 AATCAATCAT
33211817 TTAACCACAA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 51 1.00
ACGTcount: A:0.52, C:0.26, G:0.04, T:0.18
Consensus pattern (24 bp):
AATCAATCATACCAAACACAGACA
Found at i:33211950 original size:27 final size:26
Alignment explanation
Indices: 33211920--33212273 Score: 307
Period size: 27 Copynumber: 13.2 Consensus size: 26
33211910 TATCATGGTC
33211920 ATTTTGCAAACTAGGGGTATTTCGGTA
1 ATTTTGCAAACT-GGGGTATTTCGGTA
*** *
33211947 ATTTCATAAACTGGGGGTATTTCGATA
1 ATTTTGCAAACT-GGGGTATTTCGGTA
33211974 ATTTTG-AAACTGGGGGTATTTCGGTA
1 ATTTTGCAAACT-GGGGTATTTCGGTA
** * *
33212000 ATTTCACAAATTGAGGGTATTTTGGTA
1 ATTTTGCAAACTG-GGGTATTTCGGTA
*
33212027 ATTTTGCAAACTGGGGTTATTTCGATA
1 ATTTTGCAAACTGGGG-TATTTCGGTA
* *
33212054 ATTTTGTAAACTGAGGGTATTTTGGTA
1 ATTTTGCAAACTG-GGGTATTTCGGTA
* *
33212081 ATTTTGCAAATTAGGGGTATTTCAGTA
1 ATTTTGCAAACT-GGGGTATTTCGGTA
* *
33212108 ATTTTGCAAATTGTGGGGATTTCGGTA
1 ATTTTGCAAACTG-GGGTATTTCGGTA
** * * *
33212135 ATTTCACAAATTGAAGGTATTTTGGTA
1 ATTTTGCAAACTG-GGGTATTTCGGTA
* *
33212162 ATTTTACAAACTGGGGGTATTTCGATA
1 ATTTTGCAAACT-GGGGTATTTCGGTA
* *
33212189 ATTTTAC-AACTCGAGGGTATTTCGATA
1 ATTTTGCAAACT-G-GGGTATTTCGGTA
* * *
33212216 ATTTTACAAATTAGAGGTATTTCGGTA
1 ATTTTGCAAACT-GGGGTATTTCGGTA
* *
33212243 ATTTTGTAAACTGAGGGTATTTCGATA
1 ATTTTGCAAACTG-GGGTATTTCGGTA
33212270 ATTT
1 ATTT
33212274 ACCCATTGAG
Statistics
Matches: 270, Mismatches: 47, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
26 34 0.13
27 227 0.84
28 9 0.03
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (26 bp):
ATTTTGCAAACTGGGGTATTTCGGTA
Found at i:33211979 original size:54 final size:53
Alignment explanation
Indices: 33211920--33212273 Score: 345
Period size: 54 Copynumber: 6.6 Consensus size: 53
33211910 TATCATGGTC
* * *
33211920 ATTTTGCAAACTAGGGGTATTTCGGTAATTTCATAAACTGGGGGTATTTCGATA
1 ATTTTGCAAACT-GGGGTATTTCGGTAATTTTACAAACTGGGGGTATTTCGGTA
* * * *
33211974 ATTTTG-AAACTGGGGGTATTTCGGTAATTTCACAAATTGAGGGTATTTTGGTA
1 ATTTTGCAAACT-GGGGTATTTCGGTAATTTTACAAACTGGGGGTATTTCGGTA
* ** * *
33212027 ATTTTGCAAACTGGGGTTATTTCGATAATTTTGTAAACTGAGGGTATTTTGGTA
1 ATTTTGCAAACTGGGG-TATTTCGGTAATTTTACAAACTGGGGGTATTTCGGTA
* * * *
33212081 ATTTTGCAAATTAGGGGTATTTCAGTAATTTTGCAAATTGTGGGG-ATTTCGGTA
1 ATTTTGCAAACT-GGGGTATTTCGGTAATTTTACAAACTG-GGGGTATTTCGGTA
** * * * *
33212135 ATTTCACAAATTGAAGGTATTTTGGTAATTTTACAAACTGGGGGTATTTCGATA
1 ATTTTGCAAACTG-GGGTATTTCGGTAATTTTACAAACTGGGGGTATTTCGGTA
* * * * *
33212189 ATTTTAC-AACTCGAGGGTATTTCGATAATTTTACAAATTAGAGGTATTTCGGTA
1 ATTTTGCAAACT-G-GGGTATTTCGGTAATTTTACAAACTGGGGGTATTTCGGTA
* *
33212243 ATTTTGTAAACTGAGGGTATTTCGATAATTT
1 ATTTTGCAAACTG-GGGTATTTCGGTAATTT
33212274 ACCCATTGAG
Statistics
Matches: 255, Mismatches: 37, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
53 59 0.23
54 185 0.73
55 11 0.04
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (53 bp):
ATTTTGCAAACTGGGGTATTTCGGTAATTTTACAAACTGGGGGTATTTCGGTA
Found at i:33212101 original size:81 final size:81
Alignment explanation
Indices: 33211915--33212290 Score: 352
Period size: 81 Copynumber: 4.7 Consensus size: 81
33211905 AGGGTTATCA
* * * *
33211915 TGGTCATTTTGCAAACTAGGGGTATTTCGGTAATTTCATAAACTGGGGGTATTTCGATAATTTT-
1 TGGTAATTTTGCAAACTAGGGGTATTTCGGTAATTTTACAAACTGAGGGTATTTCGATAATTTTA
* *
33211979 GAAACTGGGGGTATTT
66 CAAACTGAGGGTATTT
* ** * * *
33211995 CGGTAATTTCACAAA-TTGAGGGTATTTTGGTAATTTTGCAAACTG-GGGTTATTTCGATAATTT
1 TGGTAATTTTGCAAACTAG-GGGTATTTCGGTAATTTTACAAACTGAGGG-TATTTCGATAATTT
**
33212058 TGTAAACTGAGGGTATTT
64 TACAAACTGAGGGTATTT
* * * * * * * *
33212076 TGGTAATTTTGCAAATTAGGGGTATTTCAGTAATTTTGCAAATTGTGGGGATTTCGGTAATTTCA
1 TGGTAATTTTGCAAACTAGGGGTATTTCGGTAATTTTACAAACTGAGGGTATTTCGATAATTTTA
* *
33212141 CAAATTGAAGGTATTT
66 CAAACTGAGGGTATTT
* * *
33212157 TGGTAATTTTACAAACTGGGGGTATTTCGATAATTTTAC-AACTCGAGGGTATTTCGATAATTTT
1 TGGTAATTTTGCAAACTAGGGGTATTTCGGTAATTTTACAAACT-GAGGGTATTTCGATAATTTT
*
33212221 ACAAA-TTAGAGGTATTT
65 ACAAACTGAG-GGTATTT
* * * ** *
33212238 CGGTAATTTTGTAAACT-GAGGGTATTTCGATAA-TTTACCCATTGAGGGTATTT
1 TGGTAATTTTGCAAACTAG-GGGTATTTCGGTAATTTTACAAACTGAGGGTATTT
33212291 GTGTAATTTA
Statistics
Matches: 244, Mismatches: 43, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
79 5 0.02
80 69 0.28
81 165 0.68
82 5 0.02
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (81 bp):
TGGTAATTTTGCAAACTAGGGGTATTTCGGTAATTTTACAAACTGAGGGTATTTCGATAATTTTA
CAAACTGAGGGTATTT
Found at i:33212283 original size:26 final size:27
Alignment explanation
Indices: 33211934--33212315 Score: 199
Period size: 27 Copynumber: 14.3 Consensus size: 27
33211924 TGCAAACTAG
* * ** * *
33211934 GGGTATTTCGGTAATTTCATAAACTGG
1 GGGTATTTCGATAATTTTACCAATTGA
* *
33211961 GGGTATTTCGATAATTTTGA--AACTGG
1 GGGTATTTCGATAATTTT-ACCAATTGA
* * *
33211987 GGGTATTTCGGTAATTTCACAAATTGA
1 GGGTATTTCGATAATTTTACCAATTGA
* * * * *
33212014 GGGTATTTTGGTAATTTTGCAAACTG-
1 GGGTATTTCGATAATTTTACCAATTGA
*** *
33212040 GGGTTATTTCGATAATTTTGTAAACTGA
1 GGG-TATTTCGATAATTTTACCAATTGA
* * * *
33212068 GGGTATTTTGGTAATTTTGCAAATT-A
1 GGGTATTTCGATAATTTTACCAATTGA
* * *
33212094 GGGGTATTTC-AGTAATTTTGCAAATTGT
1 -GGGTATTTCGA-TAATTTTACCAATTGA
* * * *
33212122 GGGGATTTCGGTAATTTCACAAATTGA
1 GGGTATTTCGATAATTTTACCAATTGA
* * * * * *
33212149 AGGTATTTTGGTAATTTTACAAACTGG
1 GGGTATTTCGATAATTTTACCAATTGA
*
33212176 GGGTATTTCGATAATTTTA-CAACTCGA
1 GGGTATTTCGATAATTTTACCAA-TTGA
*
33212203 GGGTATTTCGATAATTTTACAAATT-A
1 GGGTATTTCGATAATTTTACCAATTGA
* *** *
33212229 GAGGTATTTCGGTAATTTTGTAAACTGA
1 G-GGTATTTCGATAATTTTACCAATTGA
*
33212257 GGGTATTTCGATAA-TTTACCCATTGA
1 GGGTATTTCGATAATTTTACCAATTGA
* *
33212283 GGGTATTT-GTGTAA-TTTACCCATTGA
1 GGGTATTTCG-ATAATTTTACCAATTGA
*
33212309 GAGTATT
1 GGGTATT
33212316 CTGGTCATTT
Statistics
Matches: 289, Mismatches: 52, Indels: 29
0.78 0.14 0.08
Matches are distributed among these distances:
25 2 0.01
26 66 0.23
27 213 0.74
28 8 0.03
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACCAATTGA
Found at i:33218993 original size:56 final size:50
Alignment explanation
Indices: 33218923--33219052 Score: 152
Period size: 50 Copynumber: 2.5 Consensus size: 50
33218913 GATCCCATGA
* * *
33218923 AAGACCATGTCTGGGACATGGCATTAGCATTATTGAGGTTATGAGATGTCCCACGT
1 AAGACCATGTCTGGGACATGGCATTAGC---ACTGA-G--ATGAGAGGCCCCACGT
* * *
33218979 AAGACCATGTCTGGGACATGGTATTGGCACTGAGATGAGAGGCCCCTCGT
1 AAGACCATGTCTGGGACATGGCATTAGCACTGAGATGAGAGGCCCCACGT
33219029 AAGACCATGTCTGGGACATGGCAT
1 AAGACCATGTCTGGGACATGGCAT
33219053 GGGCACCGAT
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
50 36 0.54
52 1 0.01
53 4 0.06
56 26 0.39
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (50 bp):
AAGACCATGTCTGGGACATGGCATTAGCACTGAGATGAGAGGCCCCACGT
Found at i:33219081 original size:50 final size:50
Alignment explanation
Indices: 33218962--33219086 Score: 146
Period size: 50 Copynumber: 2.5 Consensus size: 50
33218952 TTATTGAGGT
** * * * *
33218962 TATGAGATGTCCCACGTAAGACCATGTCTGGGACATGGTATTGGCACTGA
1 TATGAGAACTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
* *
33219012 GATGAGAGGC-CCC-TCGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
1 TATGAGA-ACTCCCAT-GTAAGACCATGTCTGGGACATGGCATGGGCACCGA
33219062 TATGAGAACTCCCATGTAAGACCAT
1 TATGAGAACTCCCATGTAAGACCAT
33219087 ATCTAGGATA
Statistics
Matches: 62, Mismatches: 9, Indels: 8
0.78 0.11 0.10
Matches are distributed among these distances:
49 1 0.02
50 60 0.97
51 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (50 bp):
TATGAGAACTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
Found at i:33229159 original size:30 final size:30
Alignment explanation
Indices: 33229123--33229397 Score: 229
Period size: 30 Copynumber: 9.2 Consensus size: 30
33229113 TTGTTTCCAC
* * *
33229123 CCCTTTTCATAGTTCGATAGCCGAAGCTAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
*
33229153 CCCTTTTCATATTTTGATAGCCGAAGCCAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
* * * * *
33229183 CCCTTTTAATAATTAGATTGTC-ATCA-CTAT
1 CCCTTTTCATAATTTGATAGCCGA--AGCCAT
* * * *
33229213 CCCTTTTCAT--TGTTGATGGTCGTCA-TCAT
1 CCCTTTTCATAAT-TTGATAGCCG-AAGCCAT
* * **
33229242 CCCATTTCATAATTTGATAGCTGAAGATAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
* *
33229272 CCCTTTTCATAATTCGGTAGCCGAAGCCAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
*
33229302 CCCTTTTTATAATTTGATAGCCGAAGCCAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
* * *
33229332 CCCTTTTCATAATTTGATGGTCGTCA-CCAT
1 CCCTTTTCATAATTTGATAGCCG-AAGCCAT
* * *
33229362 CCCTTTTCATAATTCGATAGCTGAAGCCTT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
33229392 CCCTTT
1 CCCTTT
33229398 CCATTGGTCG
Statistics
Matches: 194, Mismatches: 41, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
28 1 0.01
29 22 0.11
30 168 0.87
31 3 0.02
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.38
Consensus pattern (30 bp):
CCCTTTTCATAATTTGATAGCCGAAGCCAT
Found at i:33251486 original size:23 final size:23
Alignment explanation
Indices: 33251460--33251508 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
33251450 ATAAGTATGA
33251460 CATCTCATATCAACTTATTTGAG
1 CATCTCATATCAACTTATTTGAG
33251483 CATCTCATATCAACTTATTTGAG
1 CATCTCATATCAACTTATTTGAG
33251506 CAT
1 CAT
33251509 GGCCATGCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (23 bp):
CATCTCATATCAACTTATTTGAG
Found at i:33265426 original size:25 final size:25
Alignment explanation
Indices: 33265396--33265446 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
33265386 CCTCTGAGTT
33265396 AGACAAAAATAGCTCGTGTTATCCC
1 AGACAAAAATAGCTCGTGTTATCCC
*
33265421 AGACAAAAATAGCTTGTGTTATCCC
1 AGACAAAAATAGCTCGTGTTATCCC
33265446 A
1 A
33265447 CTCTTGTTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.25
Consensus pattern (25 bp):
AGACAAAAATAGCTCGTGTTATCCC
Found at i:33285678 original size:60 final size:60
Alignment explanation
Indices: 33285585--33285705 Score: 224
Period size: 60 Copynumber: 2.0 Consensus size: 60
33285575 ATCAGCATCT
33285585 TCCTAGAATTTCCATGGCTTTTCTGCTGGCAATCTATCCAACATTTTGCCATGACAATAC
1 TCCTAGAATTTCCATGGCTTTTCTGCTGGCAATCTATCCAACATTTTGCCATGACAATAC
* *
33285645 TCCTAGAATTTCCATGGCTTTTCTGCTGGCAATCTGTCCAACCTTTTGCCATGACAATAC
1 TCCTAGAATTTCCATGGCTTTTCTGCTGGCAATCTATCCAACATTTTGCCATGACAATAC
33285705 T
1 T
33285706 TTACTCTTTC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.23, C:0.27, G:0.14, T:0.36
Consensus pattern (60 bp):
TCCTAGAATTTCCATGGCTTTTCTGCTGGCAATCTATCCAACATTTTGCCATGACAATAC
Found at i:33288785 original size:14 final size:15
Alignment explanation
Indices: 33288766--33288794 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
33288756 TTATCCCAAT
33288766 CAAATAAAG-AAAAA
1 CAAATAAAGCAAAAA
33288780 CAAATAAAGCAAAAA
1 CAAATAAAGCAAAAA
33288795 TGAATAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.76, C:0.10, G:0.07, T:0.07
Consensus pattern (15 bp):
CAAATAAAGCAAAAA
Found at i:33295314 original size:32 final size:32
Alignment explanation
Indices: 33295263--33295462 Score: 249
Period size: 32 Copynumber: 6.3 Consensus size: 32
33295253 GAATGGCTAC
* * *
33295263 AAGCCATAAGT-ACAGTAATATGATTGGCACA
1 AAGCCATCAGTAATAGTAATATGATCGGCACA
*
33295294 AAGCCATCAGTAGTAGTAATATGATCGGCACA
1 AAGCCATCAGTAATAGTAATATGATCGGCACA
** *
33295326 CTGCCATCAGTAATAGTAGTATGATCGGCACA
1 AAGCCATCAGTAATAGTAATATGATCGGCACA
* * *
33295358 AAGCCATCAATAGTAGTAATATGATTGGCACA
1 AAGCCATCAGTAATAGTAATATGATCGGCACA
* * * *
33295390 CACCCATCAGTAATGGTAATATGATCGACACA
1 AAGCCATCAGTAATAGTAATATGATCGGCACA
* *
33295422 CAGCCATCAGTAATGGTAATATGATCGGCACA
1 AAGCCATCAGTAATAGTAATATGATCGGCACA
33295454 AAGCCATCA
1 AAGCCATCA
33295463 ATAGCATCGC
Statistics
Matches: 144, Mismatches: 24, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
31 10 0.07
32 134 0.93
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.23
Consensus pattern (32 bp):
AAGCCATCAGTAATAGTAATATGATCGGCACA
Found at i:33295445 original size:96 final size:96
Alignment explanation
Indices: 33295276--33295466 Score: 310
Period size: 96 Copynumber: 2.0 Consensus size: 96
33295266 CCATAAGTAC
* * * *
33295276 AGTAATATGATTGGCACAAAGCCATCAGTAGTAGTAATATGATCGGCACACTGCCATCAGTAATA
1 AGTAATATGATTGGCACAAACCCATCAGTAATAGTAATATGATCGACACACAGCCATCAGTAATA
*
33295341 GTAGTATGATCGGCACAAAGCCATCAATAGT
66 GTAATATGATCGGCACAAAGCCATCAATAGT
* * *
33295372 AGTAATATGATTGGCACACACCCATCAGTAATGGTAATATGATCGACACACAGCCATCAGTAATG
1 AGTAATATGATTGGCACAAACCCATCAGTAATAGTAATATGATCGACACACAGCCATCAGTAATA
33295437 GTAATATGATCGGCACAAAGCCATCAATAG
66 GTAATATGATCGGCACAAAGCCATCAATAG
33295467 CATCGCAGCA
Statistics
Matches: 87, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
96 87 1.00
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (96 bp):
AGTAATATGATTGGCACAAACCCATCAGTAATAGTAATATGATCGACACACAGCCATCAGTAATA
GTAATATGATCGGCACAAAGCCATCAATAGT
Found at i:33295668 original size:24 final size:24
Alignment explanation
Indices: 33295636--33295691 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
33295626 GCCATGCACG
* *
33295636 AAATTAGTCATACAAATCACTGAC
1 AAATCAGTCATACAAATCACAGAC
**
33295660 AAATCAGTCATTTAAATCACAGAC
1 AAATCAGTCATACAAATCACAGAC
33295684 AAATCAGT
1 AAATCAGT
33295692 ATTTTAAATC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.46, C:0.20, G:0.09, T:0.25
Consensus pattern (24 bp):
AAATCAGTCATACAAATCACAGAC
Found at i:33295697 original size:24 final size:25
Alignment explanation
Indices: 33295649--33295768 Score: 97
Period size: 24 Copynumber: 5.0 Consensus size: 25
33295639 TTAGTCATAC
*
33295649 AAATCACTGACAAATCAGTCA-TTT
1 AAATCACAGACAAATCAGTCATTTT
33295673 AAATCACAGACAAATCAGT-ATTTT
1 AAATCACAGACAAATCAGTCATTTT
* * *
33295697 AAATCATAAACAAATTAGTCA-TTT
1 AAATCACAGACAAATCAGTCATTTT
* *** *
33295721 ACATCTGGGACAAATCATTCA-TTT
1 AAATCACAGACAAATCAGTCATTTT
* *
33295745 ACATCACA-AGCAAATCAATCATTT
1 AAATCACAGA-CAAATCAGTCATTT
33295769 AACCCCGAGG
Statistics
Matches: 77, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
23 2 0.03
24 72 0.94
25 3 0.04
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.30
Consensus pattern (25 bp):
AAATCACAGACAAATCAGTCATTTT
Found at i:33295808 original size:27 final size:26
Alignment explanation
Indices: 33295778--33295854 Score: 64
Period size: 26 Copynumber: 2.9 Consensus size: 26
33295768 TAACCCCGAG
*
33295778 GGGCAAAATAGTCATTTTACCCTATAA
1 GGGCAAAACAGTCATTTTACCCTAT-A
** * *
33295805 GGGCATTACGGTCATTTTACCTTATA
1 GGGCAAAACAGTCATTTTACCCTATA
** * *
33295831 GGGCATTACGGTCATTTTATCCTA
1 GGGCAAAACAGTCATTTTACCCTA
33295855 CAGGCGCATT
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
26 23 0.53
27 20 0.47
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.35
Consensus pattern (26 bp):
GGGCAAAACAGTCATTTTACCCTATA
Found at i:33295840 original size:26 final size:26
Alignment explanation
Indices: 33295788--33295892 Score: 129
Period size: 27 Copynumber: 3.9 Consensus size: 26
33295778 GGGCAAAATA
33295788 GTCATTTTACCCTATAAGGGCATTACG
1 GTCATTTTACCCTAT-AGGGCATTACG
*
33295815 GTCATTTTACCTTATAGGGCATTACG
1 GTCATTTTACCCTATAGGGCATTACG
* * *
33295841 GTCATTTTATCCTACAGGCGCATTGCG
1 GTCATTTTACCCTATAGG-GCATTACG
* *
33295868 GTTATTTTACCCTACAAGGGCATTA
1 GTCATTTTACCCTA-TAGGGCATTA
33295893 TAGTTCTTCT
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 26 0.39
27 38 0.57
28 3 0.04
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (26 bp):
GTCATTTTACCCTATAGGGCATTACG
Found at i:33295845 original size:53 final size:54
Alignment explanation
Indices: 33295788--33295892 Score: 133
Period size: 53 Copynumber: 2.0 Consensus size: 54
33295778 GGGCAAAATA
* *
33295788 GTCATTTTACCCTATAAGG-GCATTACGGTCATTTTACCTTA-TAGGGCATTACG
1 GTCATTTTACCCTA-AAGGCGCATTACGGTCATTTTACCCTACAAGGGCATTACG
* * * *
33295841 GTCATTTTATCCTACAGGCGCATTGCGGTTATTTTACCCTACAAGGGCATTA
1 GTCATTTTACCCTAAAGGCGCATTACGGTCATTTTACCCTACAAGGGCATTA
33295893 TAGTTCTTCT
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
52 3 0.07
53 32 0.73
54 9 0.20
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (54 bp):
GTCATTTTACCCTAAAGGCGCATTACGGTCATTTTACCCTACAAGGGCATTACG
Found at i:33295932 original size:27 final size:27
Alignment explanation
Indices: 33295902--33295985 Score: 116
Period size: 27 Copynumber: 3.1 Consensus size: 27
33295892 ATAGTTCTTC
*
33295902 TACCCTTCGAGAGTATTTC-GATAATTT
1 TACCCTTCGAGGGTATTTCAG-TAATTT
*
33295929 TACCCTTCGAGGGTATTTCAGTAGTTT
1 TACCCTTCGAGGGTATTTCAGTAATTT
* *
33295956 TACCCTTCAAGGGTATTCCAGTAATTT
1 TACCCTTCGAGGGTATTTCAGTAATTT
33295983 TAC
1 TAC
33295986 AACCTTTCCA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 50 0.98
28 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.17, T:0.39
Consensus pattern (27 bp):
TACCCTTCGAGGGTATTTCAGTAATTT
Found at i:33299970 original size:50 final size:50
Alignment explanation
Indices: 33299855--33300097 Score: 360
Period size: 50 Copynumber: 4.8 Consensus size: 50
33299845 GATAATAAGA
* * * ** *
33299855 TGCCAAAGCCATGTCCCAAACATGGTCTTACATAGGATGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* *
33299906 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
33299956 TGCCAGTGCCATGTCCCAGACATGGTCTTACATGGGACCCCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
33300006 TGCCAATGCCAAGTCCCAAACATGGTCTTACATAGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
33300056 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
33300098 TTACCCAAAT
Statistics
Matches: 172, Mismatches: 20, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
50 138 0.80
51 34 0.20
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:33317718 original size:14 final size:14
Alignment explanation
Indices: 33317699--33317726 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
33317689 TCACCTAATT
33317699 ATTCAATCTATTTA
1 ATTCAATCTATTTA
33317713 ATTCAATCTATTTA
1 ATTCAATCTATTTA
33317727 CATATCTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTCAATCTATTTA
Found at i:33328069 original size:21 final size:21
Alignment explanation
Indices: 33328045--33328089 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
33328035 TGTGGCTACC
*
33328045 TCTAG-TTCTGGTGTGGATGTA
1 TCTAGCTT-TGGTGTGGATGCA
*
33328066 TCTAGCTTTGTTGTGGATGCA
1 TCTAGCTTTGGTGTGGATGCA
33328087 TCT
1 TCT
33328090 GAGTGCTGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.13, C:0.13, G:0.29, T:0.44
Consensus pattern (21 bp):
TCTAGCTTTGGTGTGGATGCA
Found at i:33330873 original size:27 final size:27
Alignment explanation
Indices: 33330841--33330959 Score: 130
Period size: 27 Copynumber: 4.4 Consensus size: 27
33330831 GGTACTTCAG
* *
33330841 TCATTTTACCCTTTGGGGGTATTTTGG
1 TCATTTTACCCTTCGGGGGTATTTTGA
* ***
33330868 TTATTTTACCCTTCTACGGTATTTTGA
1 TCATTTTACCCTTCGGGGGTATTTTGA
* *
33330895 TCATTTTACCCTTCGGGGTTATTTCGA
1 TCATTTTACCCTTCGGGGGTATTTTGA
* * * *
33330922 TTATTTTACCCTCCGGAGGTATTTTGG
1 TCATTTTACCCTTCGGGGGTATTTTGA
33330949 TCATTTTACCC
1 TCATTTTACCC
33330960 ACGAATCGCA
Statistics
Matches: 73, Mismatches: 19, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 73 1.00
ACGTcount: A:0.15, C:0.20, G:0.18, T:0.47
Consensus pattern (27 bp):
TCATTTTACCCTTCGGGGGTATTTTGA
Found at i:33330918 original size:54 final size:54
Alignment explanation
Indices: 33330841--33330959 Score: 159
Period size: 54 Copynumber: 2.2 Consensus size: 54
33330831 GGTACTTCAG
* * * * *
33330841 TCATTTTACCCTTTGGGGGTATTTTGGTTATTTTACCCTTC-TACGGTATTTTGA
1 TCATTTTACCCTTCGGGGGTATTTCGATTATTTTACCCTCCGGA-GGTATTTTGA
* *
33330895 TCATTTTACCCTTCGGGGTTATTTCGATTATTTTACCCTCCGGAGGTATTTTGG
1 TCATTTTACCCTTCGGGGGTATTTCGATTATTTTACCCTCCGGAGGTATTTTGA
33330949 TCATTTTACCC
1 TCATTTTACCC
33330960 ACGAATCGCA
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
54 56 0.98
55 1 0.02
ACGTcount: A:0.15, C:0.20, G:0.18, T:0.47
Consensus pattern (54 bp):
TCATTTTACCCTTCGGGGGTATTTCGATTATTTTACCCTCCGGAGGTATTTTGA
Found at i:33334386 original size:18 final size:19
Alignment explanation
Indices: 33334352--33334388 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
33334342 CCTCAGTTAG
33334352 AACTTTCTTCAATTTCTTAA
1 AACTTTCTT-AATTTCTTAA
33334372 AACTTTCTT-ATTTCTTA
1 AACTTTCTTAATTTCTTA
33334389 TCAATCCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
20 9 0.53
ACGTcount: A:0.27, C:0.19, G:0.00, T:0.54
Consensus pattern (19 bp):
AACTTTCTTAATTTCTTAA
Found at i:33337969 original size:28 final size:28
Alignment explanation
Indices: 33337930--33338046 Score: 164
Period size: 28 Copynumber: 4.2 Consensus size: 28
33337920 ATACAGTAAT
33337930 AGTAA-AGTGTGGGCCTTAGCCCAAAAC
1 AGTAACAGTGTGGGCCTTAGCCCAAAAC
* *
33337957 AGTAACACTGTGGGCCTTAGCGCAAAAC
1 AGTAACAGTGTGGGCCTTAGCCCAAAAC
* *
33337985 AGTAACAGTGTGGGCCTTAGCCCAATAT
1 AGTAACAGTGTGGGCCTTAGCCCAAAAC
* * *
33338013 AGTAATAGTGTGGGTCTTAGCCCAATAC
1 AGTAACAGTGTGGGCCTTAGCCCAAAAC
33338041 AGTAAC
1 AGTAAC
33338047 CAGTACAGTG
Statistics
Matches: 79, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
27 5 0.06
28 74 0.94
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.22
Consensus pattern (28 bp):
AGTAACAGTGTGGGCCTTAGCCCAAAAC
Found at i:33338438 original size:27 final size:27
Alignment explanation
Indices: 33338390--33338508 Score: 127
Period size: 27 Copynumber: 4.4 Consensus size: 27
33338380 AGGGGTATAA
* *
33338390 CAGTCATTTT-CCCTTTGGGGGTATTT
1 CAGTCATTTTACCCTCTGAGGGTATTT
*
33338416 CACTCATTTTACCCTCTGAGGGTATTT
1 CAGTCATTTTACCCTCTGAGGGTATTT
*
33338443 C-GATCATTTTACCCT-TCAAGGGTATTT
1 CAG-TCATTTTACCCTCT-GAGGGTATTT
* * *
33338470 CGGTCATTTTACCCTCCGGGGGTATTT
1 CAGTCATTTTACCCTCTGAGGGTATTT
*
33338497 CGGTCATTTTAC
1 CAGTCATTTTAC
33338509 TCGTGAATCA
Statistics
Matches: 80, Mismatches: 8, Indels: 9
0.82 0.08 0.09
Matches are distributed among these distances:
26 10 0.12
27 69 0.86
28 1 0.01
ACGTcount: A:0.16, C:0.24, G:0.19, T:0.41
Consensus pattern (27 bp):
CAGTCATTTTACCCTCTGAGGGTATTT
Found at i:33357908 original size:103 final size:104
Alignment explanation
Indices: 33357580--33357938 Score: 605
Period size: 105 Copynumber: 3.5 Consensus size: 104
33357570 GGGTTGTTGT
* * * **
33357580 GTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCTTTGAAATGTGAA
1 GTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCTTTGAAATGAAAA
33357644 AGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAA
65 AGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAA
33357684 GTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTTGAAATGAAAA
1 GTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTTGAAATGAAAA
*
33357749 TGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAA
65 AGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAA
33357789 GTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTTGAAAT-AAAAA
1 GTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTTGAAATGAAAAA
33357853 GGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAA
66 GGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAA
* **
33357892 GTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGGGATCCACCA
1 GTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
33357939 ATAACGGCTA
Statistics
Matches: 243, Mismatches: 10, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
103 87 0.36
104 59 0.24
105 96 0.40
106 1 0.00
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (104 bp):
GTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTTTGAAATGAAAAA
GGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAA
Found at i:33361391 original size:43 final size:42
Alignment explanation
Indices: 33361344--33361460 Score: 110
Period size: 42 Copynumber: 2.7 Consensus size: 42
33361334 TCTCAGACGT
* *
33361344 GGTCTTACATGTAATCAAATAACGATGTCACTATCCCAGACAG
1 GGTCTTACATGTAATCAAAT-ACGATGCCAATATCCCAGACAG
* * * * * *
33361387 GGTCTTACGTGAAATCATATATGATGCCAATGTCCCAGACAT
1 GGTCTTACATGTAATCAAATACGATGCCAATATCCCAGACAG
*
33361429 GGTCTTACACGTAAATCTCAAAT-CGATGCCAA
1 GGTCTTACATGT-AA--TCAAATACGATGCCAA
33361461 CGTCCCAAAC
Statistics
Matches: 58, Mismatches: 13, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
42 26 0.45
43 19 0.33
44 8 0.14
45 5 0.09
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.26
Consensus pattern (42 bp):
GGTCTTACATGTAATCAAATACGATGCCAATATCCCAGACAG
Found at i:33367285 original size:19 final size:19
Alignment explanation
Indices: 33367261--33367298 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
33367251 AAACAGCATC
33367261 TTTCTTTTTAAGGGTCAAA
1 TTTCTTTTTAAGGGTCAAA
33367280 TTTCTTTTTAAGGGTCAAA
1 TTTCTTTTTAAGGGTCAAA
33367299 GGCAAACCTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.16, T:0.47
Consensus pattern (19 bp):
TTTCTTTTTAAGGGTCAAA
Found at i:33371814 original size:12 final size:11
Alignment explanation
Indices: 33371797--33371840 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 11
33371787 CAAAAATTCT
33371797 GAAAATTTTATG
1 GAAAATTTT-TG
33371809 GAAAATTTTTG
1 GAAAATTTTTG
33371820 GAAAAATTTTTGG
1 G-AAAATTTTT-G
33371833 GAAAATTT
1 GAAAATTT
33371841 ACAAAACTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
11 3 0.10
12 25 0.83
13 2 0.07
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (11 bp):
GAAAATTTTTG
Found at i:33374973 original size:43 final size:43
Alignment explanation
Indices: 33374855--33374974 Score: 122
Period size: 43 Copynumber: 2.8 Consensus size: 43
33374845 CTATTACTCG
* * * *
33374855 ATGGAATCAGCACTTAGCAACCACC-TTATATTC-TGTGATAC
1 ATGGAATCAGCACTTAACAACCACCTTTACAATCAAGTGATAC
* * *
33374896 GTGGAATCAGCACATAACAACC-CCTTCCACAATCAAG-GATAC
1 ATGGAATCAGCACTTAACAACCACCTT-TACAATCAAGTGATAC
*
33374938 AATGGAATCAGCACTTAACAACCACCTTTAGAATCAA
1 -ATGGAATCAGCACTTAACAACCACCTTTACAATCAA
33374975 TAATTTGTTG
Statistics
Matches: 63, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
40 2 0.03
41 20 0.32
42 9 0.14
43 28 0.44
44 4 0.06
ACGTcount: A:0.38, C:0.27, G:0.13, T:0.23
Consensus pattern (43 bp):
ATGGAATCAGCACTTAACAACCACCTTTACAATCAAGTGATAC
Found at i:33377150 original size:16 final size:16
Alignment explanation
Indices: 33377129--33377160 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
33377119 ATTTTGTTGC
*
33377129 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
33377145 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
33377161 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:33389225 original size:16 final size:18
Alignment explanation
Indices: 33389204--33389240 Score: 60
Period size: 16 Copynumber: 2.2 Consensus size: 18
33389194 TTTTAGTTAA
33389204 AAAACTAA-ATTG-AAAT
1 AAAACTAATATTGAAAAT
33389220 AAAACTAATATTGAAAAT
1 AAAACTAATATTGAAAAT
33389238 AAA
1 AAA
33389241 CTCCTAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.42
17 4 0.21
18 7 0.37
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.24
Consensus pattern (18 bp):
AAAACTAATATTGAAAAT
Found at i:33391156 original size:21 final size:21
Alignment explanation
Indices: 33391114--33391156 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
33391104 TTATTGGTCA
* **
33391114 TTGGAAAATAACTTTTTTTTT
1 TTGGAAAATAACTTCTCCTTT
*
33391135 TTGGAAAATTACTTCTCCTTT
1 TTGGAAAATAACTTCTCCTTT
33391156 T
1 T
33391157 GGATAAAACA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.26, C:0.12, G:0.09, T:0.53
Consensus pattern (21 bp):
TTGGAAAATAACTTCTCCTTT
Found at i:33391398 original size:19 final size:18
Alignment explanation
Indices: 33391374--33391409 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
33391364 TCTAAAAAAA
*
33391374 TTTAATATTACAATTTTAT
1 TTTAATAATA-AATTTTAT
33391393 TTTAATAATAAATTTTA
1 TTTAATAATAAATTTTA
33391410 ACATTAAACG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTAATAATAAATTTTAT
Found at i:33393191 original size:2 final size:2
Alignment explanation
Indices: 33393184--33393209 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
33393174 AGGAGGAGGA
33393184 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
33393210 GAATATTCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:33393970 original size:21 final size:21
Alignment explanation
Indices: 33393946--33393998 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
33393936 CGATTGATTT
* *
33393946 TTAATTATAAATTAATTATTA
1 TTAATTATAAATAAAATATTA
* * *
33393967 TTAAATCTATATAAAATATTA
1 TTAATTATAAATAAAATATTA
*
33393988 TTTATTATAAA
1 TTAATTATAAA
33393999 AATTATCTTA
Statistics
Matches: 23, Mismatches: 9, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
TTAATTATAAATAAAATATTA
Found at i:33393998 original size:17 final size:17
Alignment explanation
Indices: 33393976--33394014 Score: 62
Period size: 17 Copynumber: 2.3 Consensus size: 17
33393966 ATTAAATCTA
33393976 TATAAAATATTAT-TTAT
1 TATAAAA-ATTATCTTAT
33393993 TATAAAAATTATCTTAT
1 TATAAAAATTATCTTAT
33394010 TATAA
1 TATAA
33394015 TATAAAATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 5 0.24
17 16 0.76
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (17 bp):
TATAAAAATTATCTTAT
Found at i:33398214 original size:27 final size:28
Alignment explanation
Indices: 33398184--33398239 Score: 80
Period size: 27 Copynumber: 2.0 Consensus size: 28
33398174 ATGTAAATAC
33398184 TGATGT-ATCTTTGCTTTATAAT-ATATA
1 TGATGTAAT-TTTGCTTTATAATAATATA
*
33398211 TGATTTAATTTTGCTTTATAATAATATA
1 TGATGTAATTTTGCTTTATAATAATATA
33398239 T
1 T
33398240 ATGAGTTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 18 0.69
28 8 0.31
ACGTcount: A:0.32, C:0.05, G:0.09, T:0.54
Consensus pattern (28 bp):
TGATGTAATTTTGCTTTATAATAATATA
Found at i:33404079 original size:29 final size:29
Alignment explanation
Indices: 33404041--33404127 Score: 102
Period size: 29 Copynumber: 3.0 Consensus size: 29
33404031 ACTGATACAT
* *
33404041 AGTACCTGATAAATATAACACTGGCACAG
1 AGTACCTGATAAATATAACACCGGCACAA
* * * *
33404070 AGTGCTTGATAATTATAACACCGGTACAA
1 AGTACCTGATAAATATAACACCGGCACAA
*
33404099 AGTACCTGATAACTATAATCACCGGCACA
1 AGTACCTGATAAATATAA-CACCGGCACA
33404128 TAATGTCAGA
Statistics
Matches: 47, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
29 38 0.81
30 9 0.19
ACGTcount: A:0.39, C:0.22, G:0.16, T:0.23
Consensus pattern (29 bp):
AGTACCTGATAAATATAACACCGGCACAA
Found at i:33405589 original size:22 final size:22
Alignment explanation
Indices: 33405561--33405638 Score: 111
Period size: 22 Copynumber: 3.5 Consensus size: 22
33405551 TTCAAGAAAT
33405561 CATGAGAGCTTAGTACGTTAGC
1 CATGAGAGCTTAGTACGTTAGC
33405583 CATGAGAGCTTAGTACGTTAGC
1 CATGAGAGCTTAGTACGTTAGC
* * * **
33405605 CATGAGGGTTTAGTTCGTTAAA
1 CATGAGAGCTTAGTACGTTAGC
33405627 CATGAGAGCTTA
1 CATGAGAGCTTA
33405639 ATTTTACTAA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 49 1.00
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.29
Consensus pattern (22 bp):
CATGAGAGCTTAGTACGTTAGC
Found at i:33413876 original size:54 final size:55
Alignment explanation
Indices: 33413807--33413929 Score: 185
Period size: 54 Copynumber: 2.3 Consensus size: 55
33413797 TACCCTTACA
* *
33413807 GGCCGTGTCGCAGGCTGTGTGCTAGACCATGTTTGAAATTA-TTTTGAGAAACAC
1 GGCCGTGTCGCAGGCTGTGTGCTAGACCATGTTCGAAACTATTTTTGAGAAACAC
* * *
33413861 GGCCGTGTTGCAGGCTGTGTGCTAGACCATGTTCGAAACTATTTTTGAGACACAT
1 GGCCGTGTCGCAGGCTGTGTGCTAGACCATGTTCGAAACTATTTTTGAGAAACAC
*
33413916 GGCCATGTCGCAGG
1 GGCCGTGTCGCAGG
33413930 ACATGTATTA
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
54 38 0.62
55 23 0.38
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (55 bp):
GGCCGTGTCGCAGGCTGTGTGCTAGACCATGTTCGAAACTATTTTTGAGAAACAC
Found at i:33423133 original size:21 final size:20
Alignment explanation
Indices: 33423086--33423145 Score: 84
Period size: 21 Copynumber: 3.0 Consensus size: 20
33423076 AAGTCTATGA
*
33423086 ACCATTCCATTTTCTTAGTT
1 ACCATTCCATTTACTTAGTT
*
33423106 ACCATTCCATTTACTTACTTT
1 ACCATTCCATTTACTTA-GTT
*
33423127 TCCATTCCATTTACTTAGT
1 ACCATTCCATTTACTTAGT
33423146 ATAAACTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 17 0.49
21 18 0.51
ACGTcount: A:0.22, C:0.27, G:0.03, T:0.48
Consensus pattern (20 bp):
ACCATTCCATTTACTTAGTT
Found at i:33426802 original size:40 final size:40
Alignment explanation
Indices: 33426757--33426866 Score: 132
Period size: 40 Copynumber: 2.8 Consensus size: 40
33426747 ATATTTATTG
* **
33426757 CCTGAATGCACATTCGTGCCCCTGTTTGTACTTCGGTAC-
1 CCTGAATGCACATTCGTGCTCCTGTTTGTACTTCGACACT
* *
33426796 CACTGAATGCACATTCGTGCTCTTGTTAGTACTTCGACACT
1 C-CTGAATGCACATTCGTGCTCCTGTTTGTACTTCGACACT
* * *
33426837 CCTGAAGGCACATTCATGCTCCTGATTGTA
1 CCTGAATGCACATTCGTGCTCCTGTTTGTA
33426867 TTCTGGTGTG
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.02
40 57 0.97
41 1 0.02
ACGTcount: A:0.20, C:0.28, G:0.19, T:0.33
Consensus pattern (40 bp):
CCTGAATGCACATTCGTGCTCCTGTTTGTACTTCGACACT
Found at i:33435799 original size:10 final size:10
Alignment explanation
Indices: 33435786--33435810 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
33435776 TACCAACACA
33435786 AACCAAAATC
1 AACCAAAATC
33435796 AACCAAAATC
1 AACCAAAATC
33435806 AACCA
1 AACCA
33435811 TCCAAATTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.60, C:0.32, G:0.00, T:0.08
Consensus pattern (10 bp):
AACCAAAATC
Found at i:33436506 original size:29 final size:29
Alignment explanation
Indices: 33436474--33436558 Score: 80
Period size: 29 Copynumber: 2.9 Consensus size: 29
33436464 CTGATTAATA
* *
33436474 TAACACCGGCACAGAGTGCCTGATAACTG
1 TAACACCGACACAAAGTGCCTGATAACTG
* * **
33436503 TAACACTGATACAAAGTAACTGATAACTG
1 TAACACCGACACAAAGTGCCTGATAACTG
* * *
33436532 TAATCATCGACACATAGTGCTTGATAA
1 TAA-CACCGACACAAAGTGCCTGATAA
33436559 ACCCTAATGA
Statistics
Matches: 42, Mismatches: 13, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
29 26 0.62
30 16 0.38
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (29 bp):
TAACACCGACACAAAGTGCCTGATAACTG
Found at i:33438764 original size:24 final size:25
Alignment explanation
Indices: 33438727--33438776 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
33438717 ATTTCTTGTA
**
33438727 AAAAATATAAATTTTTTTATTTTTT
1 AAAAATATAAATTTTTAAATTTTTT
*
33438752 AAAAAT-TATATTTTTAAATTTTTT
1 AAAAATATAAATTTTTAAATTTTTT
33438776 A
1 A
33438777 TTTAAATTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 16 0.73
25 6 0.27
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (25 bp):
AAAAATATAAATTTTTAAATTTTTT
Found at i:33438941 original size:2 final size:2
Alignment explanation
Indices: 33438934--33438958 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
33438924 AAGATTTAAA
33438934 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
33438959 AAGACTCAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:33442266 original size:44 final size:44
Alignment explanation
Indices: 33442218--33442593 Score: 217
Period size: 44 Copynumber: 8.1 Consensus size: 44
33442208 TCTTAATCCA
* *
33442218 CTCCGCTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATTTG
1 CTCCGCTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTG
* *
33442262 CTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGATGCG
1 CTCCGCTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATC---T--G
* * * * *
33442311 ATCTACTCTGCTGTAAAT-TCAGAGAGATAAGATCCT-TTA-TTTTAATCCG
1 --CT-C-C-GCTGT-AATCTCAGGGAGATAAGAT--TACTAGCTTCAATCTG
* * *
33442360 CTCCACTATAATCTCAGGGAGATAGGATTACTAGCTTCAATCTG
1 CTCCGCTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTG
* * * *
33442404 CTCCGCTATAATCTCAAGGAGATAAGATTTCTGGCTTCAATCTAATGTG
1 CTCCGCTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATC-----TG
* * * * *
33442453 ACCTACTCTGCTGTAA-CTTCAGAGAGATAAGATCCT-TTA-TTTTAATCCG
1 --CT-C-C-GCTGTAATC-TCAGGGAGATAAGAT--TACTAGCTTCAATCTG
* * *
33442502 CTCCACTGTAATCTTAGGGAGATAGGATTACTAGCTTCAATCTG
1 CTCCGCTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTG
* * *
33442546 CTCCACTGTAATCTCAGGGAGATAAGAATT-CTGGCTTCGATCTG
1 CTCCGCTGTAATCTCAGGGAGATAAG-ATTACTAGCTTCAATCTG
33442590 CTCC
1 CTCC
33442594 ACTATTGCTT
Statistics
Matches: 256, Mismatches: 43, Indels: 66
0.70 0.12 0.18
Matches are distributed among these distances:
42 2 0.01
43 7 0.03
44 163 0.64
45 6 0.02
46 2 0.01
47 5 0.02
49 5 0.02
51 4 0.02
52 2 0.01
53 3 0.01
54 50 0.20
55 5 0.02
56 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (44 bp):
CTCCGCTGTAATCTCAGGGAGATAAGATTACTAGCTTCAATCTG
Found at i:33442417 original size:142 final size:142
Alignment explanation
Indices: 33442161--33442589 Score: 696
Period size: 142 Copynumber: 3.0 Consensus size: 142
33442151 GAGATAAGAC
* * * * * *
33442161 CTGATGCGATCTACTCTACTGTAACTTCATAAAGATAAGATCCTTTATCTTAATCCACTCCGCTG
1 CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
*
33442226 TAATCTCAGGGAGATAGGATTACTAGCTTCAATTTGCTCCGCTGTAATCTCAGGGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
33442291 TCTGGCTTCAAT
131 TCTGGCTTCAAT
* *
33442303 CTGATGCGATCTACTCTGCTGTAAATTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTA
1 CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
* *
33442368 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAAGGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
33442433 TCTGGCTTCAAT
131 TCTGGCTTCAAT
* * *
33442445 CTAATGTGACCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
* * *
33442510 TAATCTTAGGGAGATAGGATTACTAGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGAAT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
*
33442575 TCTGGCTTCGAT
131 TCTGGCTTCAAT
33442587 CTG
1 CTG
33442590 CTCCACTATT
Statistics
Matches: 264, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
142 264 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (142 bp):
CTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
TCTGGCTTCAAT
Found at i:33443903 original size:15 final size:14
Alignment explanation
Indices: 33443869--33443901 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
33443859 CTCCATTTTT
33443869 ATTTTTTCATCATC
1 ATTTTTTCATCATC
33443883 ATTTTTTCAT--TC
1 ATTTTTTCATCATC
33443895 ATTTTTT
1 ATTTTTT
33443902 TTAGGAATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.47
14 10 0.53
ACGTcount: A:0.18, C:0.15, G:0.00, T:0.67
Consensus pattern (14 bp):
ATTTTTTCATCATC
Found at i:33454024 original size:23 final size:24
Alignment explanation
Indices: 33453984--33454028 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
33453974 CCACTTTAAA
*
33453984 TTTGAAGAAAAAAGGGGAATCGAC
1 TTTGAAGAAAAAAAGGGAATCGAC
33454008 TTTGAA-AAAAAAAGGGAATCG
1 TTTGAAGAAAAAAAGGGAATCG
33454029 CCACCGATCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.49, C:0.07, G:0.27, T:0.18
Consensus pattern (24 bp):
TTTGAAGAAAAAAAGGGAATCGAC
Found at i:33456803 original size:31 final size:31
Alignment explanation
Indices: 33456765--33456825 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
33456755 ATAAAAAATT
33456765 GGGTTAAGTGCGATTGGTGTTCCAAACTATC
1 GGGTTAAGTGCGATTGGTGTTCCAAACTATC
* *
33456796 GGGTTAAGTGTGATTGGTGTTCTAAACTAT
1 GGGTTAAGTGCGATTGGTGTTCCAAACTAT
33456826 GTGATTCTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.23, C:0.11, G:0.30, T:0.36
Consensus pattern (31 bp):
GGGTTAAGTGCGATTGGTGTTCCAAACTATC
Found at i:33461814 original size:43 final size:44
Alignment explanation
Indices: 33461764--33461917 Score: 181
Period size: 43 Copynumber: 3.6 Consensus size: 44
33461754 AGTGATACGG
* *
33461764 GGAATCAGCAAATAGCAACC-CCTTTCACAATCAAAGATACAGT
1 GGAATCAGCACATAGCAACCACCTTTCATAATCAAAGATACAGT
* * * **
33461807 GGAATCAGCACTTAGCAACCACCTTT-ATATTTAGTGATACAG-
1 GGAATCAGCACATAGCAACCACCTTTCATAATCAAAGATACAGT
* * *
33461849 GGAATCAACACATAGCAACC-CCTTTCATAATCAAATATACGGT
1 GGAATCAGCACATAGCAACCACCTTTCATAATCAAAGATACAGT
*
33461892 GGAATCAGCACTTAGCAACCACCTTT
1 GGAATCAGCACATAGCAACCACCTTT
33461918 ATATTCAGTG
Statistics
Matches: 90, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
41 5 0.06
42 28 0.31
43 47 0.52
44 10 0.11
ACGTcount: A:0.37, C:0.25, G:0.14, T:0.23
Consensus pattern (44 bp):
GGAATCAGCACATAGCAACCACCTTTCATAATCAAAGATACAGT
Found at i:33461866 original size:42 final size:42
Alignment explanation
Indices: 33461729--33461953 Score: 233
Period size: 42 Copynumber: 5.3 Consensus size: 42
33461719 CGGTGGATTT
*
33461729 AGCACTTAGCAACCACC-TTAAATTCAGTGATACGGGGAATC
1 AGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATC
** * * ** *
33461770 AGCAAATAGCAACC-CCTTTCACAATCAAAGATACAGTGGAATC
1 AGCACTTAGCAACCACCTTT-ATATTCAGTGATAC-GGGGAATC
* *
33461813 AGCACTTAGCAACCACCTTTATATTTAGTGATACAGGGAATC
1 AGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATC
* * * *
33461855 AACACATAGCAACC-CCTTTCATAATCAAAT-ATACGGTGGAATC
1 AGCACTTAGCAACCACCTTT-ATATTC-AGTGATACGG-GGAATC
**
33461898 AGCACTTAGCAACCACCTTTATATTCAGTGATGTGGGGAATC
1 AGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATC
33461940 AGCACTTAGCAACC
1 AGCACTTAGCAACC
33461954 TCTTGGGGAA
Statistics
Matches: 147, Mismatches: 28, Indels: 17
0.77 0.15 0.09
Matches are distributed among these distances:
40 2 0.01
41 19 0.13
42 59 0.40
43 57 0.39
44 10 0.07
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (42 bp):
AGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATC
Found at i:33461867 original size:85 final size:85
Alignment explanation
Indices: 33461729--33461953 Score: 344
Period size: 85 Copynumber: 2.7 Consensus size: 85
33461719 CGGTGGATTT
* *
33461729 AGCACTTAGCAACCACC-TTAAATTCAGTGATACGGGGAATCAGCAAATAGCAACCCCTTTCACA
1 AGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACATAGCAACCCCTTTCACA
33461793 ATCAAAGATACAGTGGAATC
66 ATCAAAGATACAGTGGAATC
* * * *
33461813 AGCACTTAGCAACCACCTTTATATTTAGTGATACAGGGAATCAACACATAGCAACCCCTTTCATA
1 AGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACATAGCAACCCCTTTCACA
* *
33461878 ATCAAATATACGGTGGAATC
66 ATCAAAGATACAGTGGAATC
** *
33461898 AGCACTTAGCAACCACCTTTATATTCAGTGATGTGGGGAATCAGCACTTAGCAACC
1 AGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACATAGCAACC
33461954 TCTTGGGGAA
Statistics
Matches: 126, Mismatches: 14, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
84 17 0.13
85 109 0.87
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (85 bp):
AGCACTTAGCAACCACCTTTATATTCAGTGATACGGGGAATCAGCACATAGCAACCCCTTTCACA
ATCAAAGATACAGTGGAATC
Found at i:33462115 original size:19 final size:20
Alignment explanation
Indices: 33462066--33462116 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 20
33462056 TTCAATCGAG
* *
33462066 AACCTTATTTTACAACATTT
1 AACCATATTTTTCAACATTT
*
33462086 TACCA-ACTTTTTCAA-ATTT
1 AACCATA-TTTTTCAACATTT
33462105 AACCATATTTTT
1 AACCATATTTTT
33462117 GTAATCTACA
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
19 14 0.56
20 11 0.44
ACGTcount: A:0.33, C:0.20, G:0.00, T:0.47
Consensus pattern (20 bp):
AACCATATTTTTCAACATTT
Found at i:33467298 original size:11 final size:11
Alignment explanation
Indices: 33467282--33467306 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
33467272 TTTGGGCACC
33467282 AATAAGAAGAA
1 AATAAGAAGAA
33467293 AATAAGAAGAA
1 AATAAGAAGAA
33467304 AAT
1 AAT
33467307 GTATTTGCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (11 bp):
AATAAGAAGAA
Found at i:33468532 original size:40 final size:40
Alignment explanation
Indices: 33468486--33468702 Score: 267
Period size: 40 Copynumber: 5.5 Consensus size: 40
33468476 TAATTATTGT
* * *
33468486 TGAATGCATATACGTGCCCCTGTTTGAACTTCGGTACCCT
1 TGAATGCACATACGTGCCCCTATTTGAACTTCGGTACCCC
* * *
33468526 TAAATGCACATACGTGCCCCTATTTAAACTTCGGTACCCT
1 TGAATGCACATACGTGCCCCTATTTGAACTTCGGTACCCC
* * * *
33468566 TGAATGCACATACGTCCCCCTTTTTGTACTTCAGTACCCC
1 TGAATGCACATACGTGCCCCTATTTGAACTTCGGTACCCC
* **
33468606 TGAATGCACATATGTGCCCCTATTTCTACTTCGGTACCCC
1 TGAATGCACATACGTGCCCCTATTTGAACTTCGGTACCCC
* *
33468646 TGAATGCACATACGTGCCCTTGTTT-ATACTTCGGTA-CCC
1 TGAATGCACATACGTGCCCCTATTTGA-ACTTCGGTACCCC
*
33468685 TGAACGCACATACGTGCC
1 TGAATGCACATACGTGCC
33468703 TTGTTTATAC
Statistics
Matches: 155, Mismatches: 21, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
39 20 0.13
40 135 0.87
ACGTcount: A:0.22, C:0.31, G:0.16, T:0.31
Consensus pattern (40 bp):
TGAATGCACATACGTGCCCCTATTTGAACTTCGGTACCCC
Found at i:33474421 original size:26 final size:26
Alignment explanation
Indices: 33474374--33474424 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
33474364 TTAGATAAAA
*
33474374 AGGGGTCGCTAAGTGTATATTCCCCG
1 AGGGGTCGCTAAGTGTAGATTCCCCG
*
33474400 AGGGGTTGCTAAGTGCT-GATTCCCC
1 AGGGGTCGCTAAGTG-TAGATTCCCC
33474425 AAATTATTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.18, C:0.24, G:0.31, T:0.27
Consensus pattern (26 bp):
AGGGGTCGCTAAGTGTAGATTCCCCG
Found at i:33474492 original size:43 final size:43
Alignment explanation
Indices: 33474403--33474765 Score: 304
Period size: 43 Copynumber: 8.6 Consensus size: 43
33474393 TTCCCCGAGG
** * *
33474403 GGTTGCTAAGTGCTGATTCC-CCAAAT-TATTGATTTTAAAGGT
1 GGTTGCTAAGTGCTGATTCCACCGTATAT-TTGAATATAAAGGT
* * *
33474445 GGTTGCTAAGTGCTGATTCCACTGTATATTTGATTGTGAAAGG-
1 GGTTGCTAAGTGCTGATTCCACCGTATATTTGAATAT-AAAGGT
* *
33474488 GGTTGCTATGTGCTGATT-CACCGTATCA-CTGAATATAAAGGT
1 GGTTGCTAAGTGCTGATTCCACCGTAT-ATTTGAATATAAAGGT
* * *
33474530 GGTTGCTAAGTGCTTATTCCACCGTATATTTGATTTTGAAAGG-
1 GGTTGCTAAGTGCTGATTCCACCGTATATTTGAATAT-AAAGGT
* * *
33474573 GGTTGCTATGTGCTGATTCC-CTGTATCA-CTGAATATAAAGGT
1 GGTTGCTAAGTGCTGATTCCACCGTAT-ATTTGAATATAAAGGT
* *
33474615 GGTTGCTAAGTGCTGATTCCACCGTATCA-CTAAATATAAAGGT
1 GGTTGCTAAGTGCTGATTCCACCGTAT-ATTTGAATATAAAGGT
* * *
33474658 GGTTGCTAAGTGCTGATTCCACCGTATCTTT-AACTGTGAAACG-
1 GGTTGCTAAGTGCTGATTCCACCGTATATTTGAA-TAT-AAAGGT
* * * * *
33474701 GGTTGCTATGTGCTGATTCC-TCGTATCA-CTGAAT-TTAAGAT
1 GGTTGCTAAGTGCTGATTCCACCGTAT-ATTTGAATATAAAGGT
* *
33474742 GGTTACTAAGTGCTGAATCCACCG
1 GGTTGCTAAGTGCTGATTCCACCG
33474766 AGTAACGGAT
Statistics
Matches: 265, Mismatches: 38, Indels: 36
0.78 0.11 0.11
Matches are distributed among these distances:
40 2 0.01
41 28 0.11
42 89 0.34
43 131 0.49
44 15 0.06
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (43 bp):
GGTTGCTAAGTGCTGATTCCACCGTATATTTGAATATAAAGGT
Found at i:33474543 original size:85 final size:85
Alignment explanation
Indices: 33474400--33474685 Score: 371
Period size: 85 Copynumber: 3.4 Consensus size: 85
33474390 ATATTCCCCG
* ** * * * *
33474400 AGGGGTTGCTAAGTGCTGATTCCCCAAATTATTGATTTTAAAGGTGGTTGCTAAGTGCTGATTCC
1 AGGGGTTGCTAAGTGCTGATTCACCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGATTCC
* *
33474465 ACTGTATATTTGATTGTGAA
66 ACCGTATATTTGATTATGAA
* *
33474485 AGGGGTTGCTATGTGCTGATTCACCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTTATTCC
1 AGGGGTTGCTAAGTGCTGATTCACCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGATTCC
*
33474550 ACCGTATATTTGATTTTGAA
66 ACCGTATATTTGATTATGAA
*
33474570 AGGGGTTGCTATGTGCTGATTC-CCTGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGATTC
1 AGGGGTTGCTAAGTGCTGATTCACC-GTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGATTC
* * *
33474634 CACCGTATCA-CTAAATAT-AA
65 CACCGTAT-ATTTGATTATGAA
33474654 AGGTGGTTGCTAAGTGCTGATTCCACCGTATC
1 AGG-GGTTGCTAAGTGCTGATT-CACCGTATC
33474686 TTTAACTGTG
Statistics
Matches: 179, Mismatches: 17, Indels: 9
0.87 0.08 0.04
Matches are distributed among these distances:
84 7 0.04
85 163 0.91
86 7 0.04
87 2 0.01
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.35
Consensus pattern (85 bp):
AGGGGTTGCTAAGTGCTGATTCACCGTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGATTCC
ACCGTATATTTGATTATGAA
Found at i:33474651 original size:128 final size:126
Alignment explanation
Indices: 33474403--33474765 Score: 450
Period size: 128 Copynumber: 2.8 Consensus size: 126
33474393 TTCCCCGAGG
** *
33474403 GGTTGCTAAGTGCTGATTCC-CCAAATTATTGATTTT-AAAGGTGGTTGCTAAGTGCTGATTCCA
1 GGTTGCTAAGTGCTGATTCCACCGTATT-TTGATTTTGAAAGG-GGTTGCTATGTGCTGATTCC-
* * * *
33474466 CTGTAT-ATTTGATTGTGAAAGG-GGTTGCTATGTGCTGATT-CACCGTATCACTGAATATAAAG
63 CTGTATCA-CTGAAT-T-AAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCACTAAATATAAAG
33474528 GT
125 GT
*
33474530 GGTTGCTAAGTGCTTATTCCACCGTATATTTGATTTTGAAAGGGGTTGCTATGTGCTGATTCCCT
1 GGTTGCTAAGTGCTGATTCCACCGTAT-TTTGATTTTGAAAGGGGTTGCTATGTGCTGATTCCCT
33474595 GTATCACTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCACTAAATATAAAGGT
65 GTATCACTGAAT-TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCACTAAATATAAAGGT
* * * *
33474658 GGTTGCTAAGTGCTGATTCCACCGTATCTTTAACTGTGAAACGGGTTGCTATGTGCTGATT-CCT
1 GGTTGCTAAGTGCTGATTCCACCGTAT-TTTGATTTTGAAAGGGGTTGCTATGTGCTGATTCCCT
* * * *
33474722 CGTATCACTGAATTTAAGATGGTTACTAAGTGCTGAATCCACCG
65 -GTATCACTGAATTAAAGGTGGTTGCTAAGTGCTGATTCCACCG
33474766 AGTAACGGAT
Statistics
Matches: 210, Mismatches: 19, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
126 5 0.02
127 77 0.37
128 122 0.58
129 6 0.03
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (126 bp):
GGTTGCTAAGTGCTGATTCCACCGTATTTTGATTTTGAAAGGGGTTGCTATGTGCTGATTCCCTG
TATCACTGAATTAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCACTAAATATAAAGGT
Found at i:33492244 original size:17 final size:18
Alignment explanation
Indices: 33492230--33492313 Score: 80
Period size: 19 Copynumber: 4.4 Consensus size: 18
33492220 ATAATCTTCG
33492230 AGGATATGCAATCTTAGA
1 AGGATATGCAATCTTAGA
*
33492248 TATGATATGCAATCTTAGA
1 -AGGATATGCAATCTTAGA
*
33492267 TATGATATATGCAATCTTAGA
1 -A-G-GATATGCAATCTTAGA
* *
33492288 TATGATATGTAATCTTAGA
1 -AGGATATGCAATCTTAGA
33492307 A-GATATG
1 AGGATATG
33492314 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
17 6 0.11
18 1 0.02
19 33 0.58
21 17 0.30
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.36
Consensus pattern (18 bp):
AGGATATGCAATCTTAGA
Found at i:33492256 original size:19 final size:19
Alignment explanation
Indices: 33492232--33492306 Score: 123
Period size: 19 Copynumber: 3.8 Consensus size: 19
33492222 AATCTTCGAG
33492232 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
33492251 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
33492270 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
33492291 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
33492307 AGATATGATT
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
19 34 0.64
21 19 0.36
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:33492278 original size:21 final size:21
Alignment explanation
Indices: 33492233--33492295 Score: 112
Period size: 21 Copynumber: 3.1 Consensus size: 21
33492223 ATCTTCGAGG
33492233 ATATGCAATCTTAGATATG--
1 ATATGCAATCTTAGATATGAT
33492252 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
33492273 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
33492294 AT
1 AT
33492296 GTAATCTTAG
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 19 0.45
21 23 0.55
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:33492325 original size:23 final size:22
Alignment explanation
Indices: 33492245--33492329 Score: 81
Period size: 21 Copynumber: 4.0 Consensus size: 22
33492235 ATGCAATCTT
*
33492245 AGATATGATATGCAATCTTAG-
1 AGATATGATATGTAATCTTAGA
* *
33492266 ATATGAT-ATATGCAATCTT---
1 AGAT-ATGATATGTAATCTTAGA
33492285 AGATATGATATGTAATCTTAGA
1 AGATATGATATGTAATCTTAGA
*
33492307 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGTAATCTTAGA
33492330 GATTTAATTT
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
18 2 0.04
19 14 0.26
21 15 0.28
22 10 0.19
23 13 0.24
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.39
Consensus pattern (22 bp):
AGATATGATATGTAATCTTAGA
Found at i:33492339 original size:22 final size:23
Alignment explanation
Indices: 33492295--33492339 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
33492285 AGATATGATA
*
33492295 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
33492318 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
33492340 GTACATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Done.