Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62769430
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1067035 characters in sequence are not A, C, G, or T
File 125 of 206
Found at i:37628061 original size:129 final size:129
Alignment explanation
Indices: 37627838--37628221 Score: 669
Period size: 129 Copynumber: 3.0 Consensus size: 129
37627828 AATCTGATGT
*
37627838 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
* *
37627903 AGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTGATAC
66 AGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTAACAC
* * * *
37627967 GATCTTCTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATTCACTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
* *
37628032 AGGGAGATAGGATTACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAACAC
66 AGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTAACAC
*
37628096 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTATAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
*
37628161 AGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAA
66 AGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTAA
37628222 AATTCTTCGG
Statistics
Matches: 240, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
129 240 1.00
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (129 bp):
GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
AGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGACCTAACAC
Found at i:37628273 original size:175 final size:174
Alignment explanation
Indices: 37628017--37628394 Score: 562
Period size: 175 Copynumber: 2.2 Consensus size: 174
37628007 TTTTAATTCA
* * * *
37628017 CTCCACTGTAATCTCAGGGAGATAGGAT-TACTAACTTCAATCTGCTCCGCTGTAATCTCAGGGA
1 CTCCGCTGTAATCTCAGGGAGATAAGATCTACAAACTTCAATCTGCTCCACTGTAATCTCAGGGA
* * * * *
37628081 GATAAGATCTAACACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCG
66 AATAAAACCTAACACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCA
*
37628146 CTCCACTATAATCTCAGGGAGATAGGATTACTAGCTTCAATCTG
131 CTCCACTATAATCTCAGGGAGATAGGATTACTAACTTCAATCTG
** *
37628190 CTCCGCTGTAATCTCAGGGAGATAAGATCTA-AAATTCTTCGGTCTGTTCCACTGTAATCTCAGG
1 CTCCGCTGTAATCTCAGGGAGATAAGATCTACAAA--CTTCAATCTGCTCCACTGTAATCTCAGG
* * *
37628254 GAAATAAAACCTGACACGATCTACTCTGCTGTAGCTTCAGAGAGATAAGATCCTTCATTTTAATC
64 GAAATAAAACCTAACACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATC
*
37628319 CACTCCACTGTAATCTCAGGGAGATAGGATTACTAACTTCAATCTG
129 CACTCCACTATAATCTCAGGGAGATAGGATTACTAACTTCAATCTG
*
37628365 CTCCGCTGTAATCTCAGGGAGGTAAGATCT
1 CTCCGCTGTAATCTCAGGGAGATAAGATCT
37628395 GACACGATCT
Statistics
Matches: 184, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
173 28 0.15
174 2 0.01
175 154 0.84
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (174 bp):
CTCCGCTGTAATCTCAGGGAGATAAGATCTACAAACTTCAATCTGCTCCACTGTAATCTCAGGGA
AATAAAACCTAACACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTCATTTTAATCCA
CTCCACTATAATCTCAGGGAGATAGGATTACTAACTTCAATCTG
Found at i:37628338 original size:85 final size:82
Alignment explanation
Indices: 37628055--37628344 Score: 249
Period size: 85 Copynumber: 3.4 Consensus size: 82
37628045 TACTAACTTC
* * * *
37628055 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAACACGATCTACTCTACTGTAACTTCAGA
1 AATCCGCTCCACTGTAATCTCAGGGAGATAA-AACT-ACACGATCTACTCTGCTGT-ACTTCAGA
*
37628120 GAGATAAGATCCTTTATTTT
63 GAGATAAGATCCTTAATTTT
* * * * * * *
37628140 AATCCGCTCCACTATAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTC
1 AATCCGCTCCACTGTAATCTCAGGGAGATA--A-AACTA-C-ACGATCTACTCTGCTGTACT-TC
* *
37628205 AGGGAGATAAGAT-CTAAAATTCTT
60 AGAGAGATAAGATCCT-TAATT-TT
** * * *
37628229 CGGTCTGTTCCACTGTAATCTCAGGGAAATAAAACCTGACACGATCTACTCTGCTGTAGCTTCAG
1 -AATCCGCTCCACTGTAATCTCAGGGAGATAAAA-CT-ACACGATCTACTCTGCTGTA-CTTCAG
*
37628294 AGAGATAAGATCCTTCATTTT
62 AGAGATAAGATCCTTAATTTT
*
37628315 AATCCACTCCACTGTAATCTCAGGGAGATA
1 AATCCGCTCCACTGTAATCTCAGGGAGATA
37628345 GGATTACTAA
Statistics
Matches: 157, Mismatches: 36, Indels: 24
0.72 0.17 0.11
Matches are distributed among these distances:
85 51 0.32
86 3 0.02
87 40 0.25
88 36 0.23
89 3 0.02
90 24 0.15
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (82 bp):
AATCCGCTCCACTGTAATCTCAGGGAGATAAAACTACACGATCTACTCTGCTGTACTTCAGAGAG
ATAAGATCCTTAATTTT
Found at i:37628717 original size:57 final size:58
Alignment explanation
Indices: 37628629--37628740 Score: 174
Period size: 57 Copynumber: 1.9 Consensus size: 58
37628619 TGTTTTTGAT
* *
37628629 CTGCTTCGATGTTAATGCAGGAAGGCAAGATCTGTTG-CTTTAACCAGCTCCATCGAC
1 CTGCTTCGATGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCGAC
*
37628686 CTGCTTC-ACTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATC
1 CTGCTTCGA-TGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATC
37628741 ACAACCGAGA
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
56 1 0.02
57 33 0.66
58 16 0.32
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.29
Consensus pattern (58 bp):
CTGCTTCGATGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCCATCGAC
Found at i:37628843 original size:88 final size:88
Alignment explanation
Indices: 37628681--37629158 Score: 796
Period size: 88 Copynumber: 5.4 Consensus size: 88
37628671 ACCAGCTCCA
*
37628681 TCGACCTGCTTCACTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAAC
1 TCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAAC
*
37628746 CGAGAGAGGCAAGGTTTCTGTCT
66 CGAGAGAGGCAAGGTTTGTGTCT
* *
37628769 TCAACCTACTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAAC
1 TCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAAC
37628834 CGAGAGAGGCAAGGTTTGTGTCT
66 CGAGAGAGGCAAGGTTTGTGTCT
* * * * *
37628857 TCGACCTGCTTCGCTGTCGATGCAGAAATGCAAGATCTTTTGTTTTCAACCAGCTCCATCACAAT
1 TCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAAC
* *
37628922 TGAGAGAGGCAAGGTTTATGTCT
66 CGAGAGAGGCAAGGTTTGTGTCT
*
37628945 TCGGCCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAAC
1 TCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAAC
37629010 CGAGAGAGGCAAGGTTTGTGTCT
66 CGAGAGAGGCAAGGTTTGTGTCT
* *
37629033 TCGACCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAAT
1 TCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAAC
37629098 CGAGAGAGGCAAGGTTTGTGTCT
66 CGAGAGAGGCAAGGTTTGTGTCT
* *
37629121 TCGACCTGCTTCGCTGTTAATACTA-GAAGGCAAGATCT
1 TCGACCTGCTTCGCTGTCAATGC-AGGAAGGCAAGATCT
37629159 GCAACTTCAT
Statistics
Matches: 364, Mismatches: 25, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
88 363 1.00
89 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (88 bp):
TCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAAC
CGAGAGAGGCAAGGTTTGTGTCT
Found at i:37629152 original size:44 final size:43
Alignment explanation
Indices: 37628752--37629154 Score: 193
Period size: 44 Copynumber: 9.2 Consensus size: 43
37628742 CAACCGAGAG
* * * *
37628752 AGGCAAGGTTTCTGTCTTCAACCTACTTCGCTGTCAATGCAGGA
1 AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACA-GA
* * * * *
37628796 AGGCAAGATCTTTTGTCTTCAACCAGC-TC-C-ATCACA-ACCGAGA
1 AGGCAAGGT-TTGTGTCTTCGACCTGCTTCGCTGTCA-ATA-C-AGA
* *
37628839 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCGATGCAGAA
1 -AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAG-A
* * * * * * ** **
37628884 ATGCAAGATCTTTTGTTTTCAACCAGC-TC-CATCACAATTGAGA
1 AGGCAAGGT-TTGTGTCTTCGACCTGCTTCGC-TGTCAATACAGA
* * *
37628927 GAGGCAAGGTTTATGTCTTCGGCCTGCTTCGCTGTCAATGCAGGA
1 -AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACA-GA
* * * * *
37628972 AGGCAAGATCTTTTGTCTTCAACCAGC-TC-C-ATCACA-ACCGAGA
1 AGGCAAGGT-TTGTGTCTTCGACCTGCTTCGCTGTCA-ATA-C-AGA
37629015 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGGA
1 -AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACA-GA
* * * * **
37629060 AGGCAAGATCTTTTGTCTTCAACCAGC-TC-CATCACAAT-CGAGA
1 AGGCAAGGT-TTGTGTCTTCGACCTGCTTCGC-TGTCAATAC-AGA
*
37629103 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTTAATACTAGA
1 -AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATAC-AGA
37629148 AGGCAAG
1 AGGCAAG
37629155 ATCTGCAACT
Statistics
Matches: 265, Mismatches: 61, Indels: 66
0.68 0.16 0.17
Matches are distributed among these distances:
42 6 0.02
43 70 0.26
44 112 0.42
45 71 0.27
46 6 0.02
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (43 bp):
AGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATACAGA
Found at i:37630571 original size:3 final size:3
Alignment explanation
Indices: 37630563--37630612 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
37630553 ACAAATTTCA
*
37630563 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TGT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
37630611 TA
1 TA
37630613 CTTTTATATA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:37635478 original size:2 final size:2
Alignment explanation
Indices: 37635471--37635510 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
37635461 TTGAAATCTG
37635471 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
37635511 AATTCGGAGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:37643023 original size:23 final size:22
Alignment explanation
Indices: 37642997--37643069 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 22
37642987 ATAAGTGCCA
37642997 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCC-AAGCTAC
37643020 CACTGATATGTAGCCATAGCTAC
1 CACTGATATGTAGCCA-AGCTAC
* *
37643043 CACTGAAATGTAGTCAAAGCTAC
1 CACTGATATGTAG-CCAAGCTAC
37643066 CACT
1 CACT
37643070 AATCAATAAC
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
22 1 0.02
23 43 0.93
24 2 0.04
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (22 bp):
CACTGATATGTAGCCAAGCTAC
Found at i:37643324 original size:18 final size:17
Alignment explanation
Indices: 37643298--37643336 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
37643288 ATTTTCCTTC
37643298 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
37643315 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
37643333 CACA
1 CACA
37643337 ATTTATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:37647605 original size:130 final size:130
Alignment explanation
Indices: 37647372--37647635 Score: 388
Period size: 130 Copynumber: 2.0 Consensus size: 130
37647362 CAGGAAGTCA
* * * *
37647372 GATTTCTGGGACATGTTGGATCGGTCGAAGGCATTAGAGTTGACTTGAGAAAAATTTTAGCTGTT
1 GATTTCTGGGACATGTTGGATCGCTCGAAGGCATTAGAGTTGACTTAAGAAAAATTTCAGCTATT
* * *
37647437 GTTGATTGGAAGCCTCTAAGAAATGTATTGGAGGTTAGAAGTTTTTTGGGTTTAGCCGGTCAAGT
66 GTTGATTAGAAGCCTCCAAGAAATGTATTGGAGGTTAGAAGTTTTTTAGGTTTAGCCGGTCAAGT
* *
37647502 GATTTCTTGGACATGTTGTATCAGCT-GAAGGCATTAGAGTTGA-TATAAGAAAAATTTCAGCTA
1 GATTTCTGGGACATGTTGGATC-GCTCGAAGGCATTAGAGTTGACT-TAAGAAAAATTTCAGCTA
* * *
37647565 TTGTTGATTAGAAGCCTCCGAGAAATGTATTTGATGTTAGAAGTTTTTTAGGTTTAGCCGGTCAA
64 TTGTTGATTAGAAGCCTCCAAGAAATGTATTGGAGGTTAGAAGTTTTTTAGGTTTAGCCGGTCAA
37647630 GT
129 GT
37647632 GATT
1 GATT
37647636 CTCGATGATT
Statistics
Matches: 120, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
129 1 0.01
130 117 0.98
131 2 0.02
ACGTcount: A:0.27, C:0.10, G:0.27, T:0.36
Consensus pattern (130 bp):
GATTTCTGGGACATGTTGGATCGCTCGAAGGCATTAGAGTTGACTTAAGAAAAATTTCAGCTATT
GTTGATTAGAAGCCTCCAAGAAATGTATTGGAGGTTAGAAGTTTTTTAGGTTTAGCCGGTCAAGT
Found at i:37654853 original size:30 final size:31
Alignment explanation
Indices: 37654798--37654865 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
37654788 ACCCTTAAAA
** * **
37654798 TATTTACACTATTGGTCCTTCAAATTTTTTG
1 TATTTACACTATTAATCCCTCAAATTTTGAG
37654829 TATTTACACT-TTAATCCCTCAAATTTTGAG
1 TATTTACACTATTAATCCCTCAAATTTTGAG
37654859 TATTTAC
1 TATTTAC
37654866 TCTTGGGAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.26, C:0.18, G:0.07, T:0.49
Consensus pattern (31 bp):
TATTTACACTATTAATCCCTCAAATTTTGAG
Found at i:37656633 original size:50 final size:50
Alignment explanation
Indices: 37656566--37656943 Score: 483
Period size: 50 Copynumber: 7.6 Consensus size: 50
37656556 ATATCTGTAC
* * ** * *
37656566 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTTTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* **
37656616 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
** * *
37656666 TGCCAGCGCTATGTCCCAGACATGGTCTTACATGTGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
37656716 TGCCAATGCCATGTCCCAGACATGGTCTTACATAGGACCTCTTATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
**
37656766 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
37656816 TGCCAACGCAATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * *
37656866 TGCCAAAGCCATGTCCCTGACATGGTCTTACACT-GG--CTCACATCTCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACA-TGGGACCTCTCATCTCGG
*** *
37656914 TGTTGATGCCATGTCCCAGATATGGTCTTA
1 TGCCAATGCCATGTCCCAGACATGGTCTTA
37656944 TACGAGATCA
Statistics
Matches: 286, Mismatches: 41, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
48 34 0.12
50 251 0.88
51 1 0.00
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:37659765 original size:31 final size:30
Alignment explanation
Indices: 37659727--37659785 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
37659717 CACCCTTAAA
* * *
37659727 ATATTTACACTATTGATCCTTCAACTTTTTC
1 ATATTTACACT-TTAATCCCTCAAATTTTTC
37659758 ATATTTACACTTTAATCCCTCAAATTTT
1 ATATTTACACTTTAATCCCTCAAATTTT
37659786 GAGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.29, C:0.22, G:0.02, T:0.47
Consensus pattern (30 bp):
ATATTTACACTTTAATCCCTCAAATTTTTC
Found at i:37659795 original size:30 final size:31
Alignment explanation
Indices: 37659727--37659795 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 31
37659717 CACCCTTAAA
* * *
37659727 ATATTTACACTATTGATCCTTCAACTTTTTC
1 ATATTTACACTATTAATCCCTCAACATTTTC
*
37659758 ATATTTACACT-TTAATCCCTCAA-ATTTTG
1 ATATTTACACTATTAATCCCTCAACATTTTC
37659787 AGTATTTAC
1 A-TATTTAC
37659796 TCTTGGGCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 5 0.15
30 17 0.52
31 11 0.33
ACGTcount: A:0.29, C:0.20, G:0.04, T:0.46
Consensus pattern (31 bp):
ATATTTACACTATTAATCCCTCAACATTTTC
Found at i:37662142 original size:20 final size:20
Alignment explanation
Indices: 37662114--37662157 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
37662104 AGATGCATAA
*
37662114 CAGGGGCACCAAAGTACAAT
1 CAGGAGCACCAAAGTACAAT
* * *
37662134 CAGGAGCACGAATGTGCAAT
1 CAGGAGCACCAAAGTACAAT
37662154 CAGG
1 CAGG
37662158 GGAACAAATG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.36, C:0.23, G:0.30, T:0.11
Consensus pattern (20 bp):
CAGGAGCACCAAAGTACAAT
Found at i:37662167 original size:20 final size:20
Alignment explanation
Indices: 37662130--37662219 Score: 65
Period size: 20 Copynumber: 4.5 Consensus size: 20
37662120 CACCAAAGTA
* * *
37662130 CAATCAGGAGCACGAATGTG
1 CAATCAGGGGAACAAATGTG
37662150 CAATCAGGGGAACAAATGTG
1 CAATCAGGGGAACAAATGTG
* * * * *
37662170 CATTTAGGGGTATCGAA-GTA
1 CAATCAGGGG-AACAAATGTG
* *
37662190 CAAACAGGGGCACAAATGTG
1 CAATCAGGGGAACAAATGTG
*
37662210 CATTCAGGGG
1 CAATCAGGGG
37662220 TACTGAAGTA
Statistics
Matches: 51, Mismatches: 17, Indels: 4
0.71 0.24 0.06
Matches are distributed among these distances:
19 3 0.06
20 44 0.86
21 4 0.08
ACGTcount: A:0.34, C:0.17, G:0.31, T:0.18
Consensus pattern (20 bp):
CAATCAGGGGAACAAATGTG
Found at i:37662237 original size:20 final size:20
Alignment explanation
Indices: 37662175--37662239 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
37662165 ATGTGCATTT
37662175 AGGGGTA-TCGAAGTACAAAC
1 AGGGGTACT-GAAGTACAAAC
* * * **
37662195 AGGGGCAC-AAATGTGCATTC
1 AGGGGTACTGAA-GTACAAAC
37662215 AGGGGTACTGAAGTACAAAC
1 AGGGGTACTGAAGTACAAAC
37662235 AGGGG
1 AGGGG
37662240 CACTTCTTCA
Statistics
Matches: 32, Mismatches: 10, Indels: 6
0.67 0.21 0.12
Matches are distributed among these distances:
19 2 0.06
20 28 0.88
21 2 0.06
ACGTcount: A:0.35, C:0.15, G:0.34, T:0.15
Consensus pattern (20 bp):
AGGGGTACTGAAGTACAAAC
Found at i:37662240 original size:40 final size:40
Alignment explanation
Indices: 37662154--37662242 Score: 144
Period size: 40 Copynumber: 2.2 Consensus size: 40
37662144 AATGTGCAAT
* *
37662154 CAGGGGAACAAATGTGCATTTAGGGGTATCGAAGTACAAA
1 CAGGGGCACAAATGTGCATTCAGGGGTATCGAAGTACAAA
37662194 CAGGGGCACAAATGTGCATTCAGGGGTA-CTGAAGTACAAA
1 CAGGGGCACAAATGTGCATTCAGGGGTATC-GAAGTACAAA
37662234 CAGGGGCAC
1 CAGGGGCAC
37662243 TTCTTCATTT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
39 1 0.02
40 45 0.98
ACGTcount: A:0.35, C:0.17, G:0.31, T:0.17
Consensus pattern (40 bp):
CAGGGGCACAAATGTGCATTCAGGGGTATCGAAGTACAAA
Found at i:37671034 original size:50 final size:50
Alignment explanation
Indices: 37670972--37671092 Score: 136
Period size: 50 Copynumber: 2.4 Consensus size: 50
37670962 AAATGTCATA
* ** * * **
37670972 TCCCAGATATGGTCTTACATGAGAGTTCTCATATCGGTGCCCATGTTATG
1 TCCCAGACATGGTCTTACATGAGACCTCTCATATCGGTGCCAACGCCATG
* * *
37671022 TCCCAGACATGGTCTTACGA-GGGACCTCTCATCTCGGTGCTAACGCCATG
1 TCCCAGACATGGTCTTAC-ATGAGACCTCTCATATCGGTGCCAACGCCATG
37671072 TCCCAGACATGGTCTTACATG
1 TCCCAGACATGGTCTTACATG
37671093 GGATCTCATT
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
49 1 0.02
50 57 0.97
51 1 0.02
ACGTcount: A:0.21, C:0.27, G:0.22, T:0.29
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGAGACCTCTCATATCGGTGCCAACGCCATG
Found at i:37675111 original size:2 final size:2
Alignment explanation
Indices: 37675104--37675136 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
37675094 AAACACCTTT
37675104 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
37675137 GAACTAGTGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:37680823 original size:2 final size:2
Alignment explanation
Indices: 37680816--37680848 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
37680806 GAATCTCCAA
37680816 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
37680849 AATACTGGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:37690552 original size:33 final size:32
Alignment explanation
Indices: 37690500--37690564 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 32
37690490 AGTAAACAAG
*
37690500 GATATCTACTGGGACAGTAAATACAGAACAGA
1 GATATCTACTGGGACAGTAAACACAGAACAGA
* * *
37690532 GATAGTCTGCTGGGATAGTAAACACATAACAGA
1 GATA-TCTACTGGGACAGTAAACACAGAACAGA
37690565 TAGTCCATCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
32 4 0.14
33 24 0.86
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.20
Consensus pattern (32 bp):
GATATCTACTGGGACAGTAAACACAGAACAGA
Found at i:37690569 original size:31 final size:32
Alignment explanation
Indices: 37690494--37690569 Score: 84
Period size: 33 Copynumber: 2.4 Consensus size: 32
37690484 TGGGGCAGTA
*
37690494 AACAAGGATA-TCTACTGGGACAGTAAATACAG
1 AACAA-GATAGTCTACTGGGACAGTAAACACAG
* * *
37690526 AACAGAGATAGTCTGCTGGGATAGTAAACACAT
1 AACA-AGATAGTCTACTGGGACAGTAAACACAG
37690559 AAC-AGATAGTC
1 AACAAGATAGTC
37690570 CATCGAGATA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
31 8 0.21
32 8 0.21
33 22 0.58
ACGTcount: A:0.42, C:0.16, G:0.22, T:0.20
Consensus pattern (32 bp):
AACAAGATAGTCTACTGGGACAGTAAACACAG
Found at i:37695341 original size:6 final size:6
Alignment explanation
Indices: 37695330--37695359 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
37695320 ATCTTGTGGC
37695330 AAAAAG AAAAAG AAAAA- AAAAAG AAAAAG A
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG A
37695360 TGGTAAAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:37695350 original size:11 final size:12
Alignment explanation
Indices: 37695330--37695359 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
37695320 ATCTTGTGGC
37695330 AAAAAGAAAAAG
1 AAAAAGAAAAAG
37695342 AAAAA-AAAAAG
1 AAAAAGAAAAAG
37695353 AAAAAGA
1 AAAAAGA
37695360 TGGTAAAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (12 bp):
AAAAAGAAAAAG
Found at i:37698466 original size:17 final size:17
Alignment explanation
Indices: 37698444--37698477 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
37698434 TTTCGCAGAC
37698444 TTAGAGTTTGACACTTG
1 TTAGAGTTTGACACTTG
37698461 TTAGAGTTTGACACTTG
1 TTAGAGTTTGACACTTG
37698478 CTTCAATGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.41
Consensus pattern (17 bp):
TTAGAGTTTGACACTTG
Found at i:37702592 original size:76 final size:78
Alignment explanation
Indices: 37702463--37702605 Score: 209
Period size: 76 Copynumber: 1.9 Consensus size: 78
37702453 TTGGACTTGG
* * *
37702463 TTAAAGGTATGAATGTTATATATATGTATATGTGAGTTGGAATATATATGTATATACATGAATAA
1 TTAAAGGTATGAATGTTATATATATGTATATGTAAATTCGAATATATATGTATATACATGAATAA
37702528 GTCTTGAATATAT
66 GTCTTGAATATAT
* * * *
37702541 TTAAAGGTATGAATG-T-TATGTATGTATATGTAAATTCGAATGTGTATGTATATACATGTATAA
1 TTAAAGGTATGAATGTTATATATATGTATATGTAAATTCGAATATATATGTATATACATGAATAA
37702604 GT
66 GT
37702606 TTTTGTATTG
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
76 42 0.72
77 1 0.02
78 15 0.26
ACGTcount: A:0.37, C:0.03, G:0.19, T:0.41
Consensus pattern (78 bp):
TTAAAGGTATGAATGTTATATATATGTATATGTAAATTCGAATATATATGTATATACATGAATAA
GTCTTGAATATAT
Found at i:37703104 original size:41 final size:40
Alignment explanation
Indices: 37703030--37703150 Score: 122
Period size: 41 Copynumber: 3.0 Consensus size: 40
37703020 TCAGTGAAAT
* *
37703030 AATTT-AGACTTTACGTCTAGCAGGCT-TGATGCCGGTGAA
1 AATTTCAGACTTTAAGTCTAGCAGGCTAAG-TGCCGGTGAA
* *
37703069 ACATTTCAGACTATATGTCTAGCAGGCTAAGTGCCGGTGTACA
1 A-ATTTCAGACTTTAAGTCTAGCAGGCTAAGTGCCGGTG-A-A
* * *
37703112 AA-ATCAGGCTTTAAGCCTAGCAGGCTAAGTGCCGGTGAA
1 AATTTCAGACTTTAAGTCTAGCAGGCTAAGTGCCGGTGAA
37703151 TCTGTTTAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 10
0.79 0.09 0.11
Matches are distributed among these distances:
39 2 0.03
40 5 0.07
41 57 0.83
42 3 0.04
43 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (40 bp):
AATTTCAGACTTTAAGTCTAGCAGGCTAAGTGCCGGTGAA
Found at i:37703353 original size:13 final size:13
Alignment explanation
Indices: 37703337--37703361 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37703327 ATATTAAATA
37703337 TATATGCATTAGG
1 TATATGCATTAGG
37703350 TATATGCATTAG
1 TATATGCATTAG
37703362 CTAAGCAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (13 bp):
TATATGCATTAGG
Found at i:37707532 original size:29 final size:28
Alignment explanation
Indices: 37707453--37707532 Score: 99
Period size: 29 Copynumber: 2.8 Consensus size: 28
37707443 TGTTTCTATT
* *
37707453 AAAAA-GAGAGAATTTTCGTTTTCATCCC
1 AAAAAGGAGAGAATTTT-TTTTTCACCCC
*
37707481 AAAAAGGAGAGAATTTTTATTTTTACCCC
1 AAAAAGGAGAGAATTTTT-TTTTCACCCC
37707510 AAAAAGGAGAGAACTTTTTTTTT
1 AAAAAGGAGAGAA-TTTTTTTTT
37707533 AATTCTGTGT
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
28 5 0.11
29 36 0.78
30 5 0.11
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (28 bp):
AAAAAGGAGAGAATTTTTTTTTCACCCC
Found at i:37710121 original size:14 final size:14
Alignment explanation
Indices: 37710098--37710130 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
37710088 TTCGTTAAAC
37710098 TACAGAGGCCCAAA
1 TACAGAGGCCCAAA
*
37710112 TACAGTGGCCCAAA
1 TACAGAGGCCCAAA
37710126 -ACAGA
1 TACAGA
37710131 TGAAAAGCCC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.42, C:0.27, G:0.21, T:0.09
Consensus pattern (14 bp):
TACAGAGGCCCAAA
Found at i:37714257 original size:30 final size:30
Alignment explanation
Indices: 37714223--37714279 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
37714213 TGACGTGCTT
*
37714223 TAATGATTCGGAATTATTTTTAAGATCTAA
1 TAATGATTCAGAATTATTTTTAAGATCTAA
*
37714253 TAATGATTCAGATTTATTTTTAAGATC
1 TAATGATTCAGAATTATTTTTAAGATC
37714280 CATTAGATCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.35, C:0.07, G:0.12, T:0.46
Consensus pattern (30 bp):
TAATGATTCAGAATTATTTTTAAGATCTAA
Found at i:37718398 original size:29 final size:29
Alignment explanation
Indices: 37718357--37718412 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
37718347 ATACTATACC
*
37718357 ATATATTATATTTCAAGGTATTAGATTGT
1 ATATATTATATTTCAAGATATTAGATTGT
*
37718386 ATATATTATATTTCAAGATTTTAGATT
1 ATATATTATATTTCAAGATATTAGATT
37718413 TCTAGTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.36, C:0.04, G:0.11, T:0.50
Consensus pattern (29 bp):
ATATATTATATTTCAAGATATTAGATTGT
Found at i:37720026 original size:125 final size:125
Alignment explanation
Indices: 37719804--37720116 Score: 504
Period size: 125 Copynumber: 2.5 Consensus size: 125
37719794 GATAAAATCA
* *
37719804 AAGCAGGATGCTTTATCAGAAGAATTTCT-AAAGTCGCGCCCAT-GTGGATGCACTTTTGCTACA
1 AAGCAGGATGCTTTATCAAAAGAATTTCTGAAA-TCGCGCCC-TCGTGGACGCACTTTTGCTACA
* *
37719867 ATAGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTAAGCAAATAGTATAAAAAACGTTTC
64 ATAGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTAAGAAAATAGTATAAAAAACGCTTC
* *
37719929 AAGCAGGATGCTTTATCAAAAGAATTTCTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACATT
1 AAGCAGGATGCTTTATCAAAAGAATTTCTGAAATCGCGCCCTCGTGGACGCACTTTTGCTACAAT
* * *
37719994 AGGTCCTGGGAAAATAATTTCGAGTTGACGTTTCTGAGAAAATAGTATAAAAAATGCTTC
66 AGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTAAGAAAATAGTATAAAAAACGCTTC
*
37720054 AAGCAGGATGCTTTATCAAAAGAATTTCTGAAATCGTGCCCTCGTGGACGCACTTTTGCTACA
1 AAGCAGGATGCTTTATCAAAAGAATTTCTGAAATCGCGCCCTCGTGGACGCACTTTTGCTACA
37720117 GTAGCATGTT
Statistics
Matches: 175, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
124 1 0.01
125 171 0.98
126 3 0.02
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (125 bp):
AAGCAGGATGCTTTATCAAAAGAATTTCTGAAATCGCGCCCTCGTGGACGCACTTTTGCTACAAT
AGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTAAGAAAATAGTATAAAAAACGCTTC
Found at i:37721395 original size:51 final size:50
Alignment explanation
Indices: 37721334--37721431 Score: 144
Period size: 51 Copynumber: 1.9 Consensus size: 50
37721324 AAATAATTAA
37721334 AAATAGGGATTTAAGAGAAATTT-AAGAGAAAATTGAGAGCAAATTGAAATT
1 AAATAGGGATTTAAGAGAAATTTGAAG-G-AAATTGAGAGCAAATTGAAATT
* *
37721385 AAATATGGATTTGAGAGAAATTTGGAAGGAAATTGAGAGCAAATTGA
1 AAATAGGGATTTAAGAGAAATTT-GAAGGAAATTGAGAGCAAATTGA
37721432 GAGCAAATTG
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
51 39 0.91
52 1 0.02
53 3 0.07
ACGTcount: A:0.48, C:0.02, G:0.24, T:0.26
Consensus pattern (50 bp):
AAATAGGGATTTAAGAGAAATTTGAAGGAAATTGAGAGCAAATTGAAATT
Found at i:37721643 original size:40 final size:40
Alignment explanation
Indices: 37721588--37721666 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 40
37721578 CAGGGGCGCG
* *
37721588 CTACGTGGCAGCAAAACGCGTCCACGTCAGCGCGCTTTGC
1 CTACGTGGCAACAAAACGCGTCCACGTAAGCGCGCTTTGC
37721628 CTACGTGGCAACAAAACGCGTCCACGTAAGCGCGCTTTG
1 CTACGTGGCAACAAAACGCGTCCACGTAAGCGCGCTTTG
37721667 TTGCCACGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.23, C:0.33, G:0.27, T:0.18
Consensus pattern (40 bp):
CTACGTGGCAACAAAACGCGTCCACGTAAGCGCGCTTTGC
Found at i:37722251 original size:20 final size:20
Alignment explanation
Indices: 37722205--37722251 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 20
37722195 ATAATAGTAC
37722205 ATTATATATTATATATTATTG
1 ATTAT-TATTATATATTATTG
37722226 -TCTATTATTATAT-TATATTG
1 AT-TATTATTATATAT-TATTG
37722246 ATTATT
1 ATTATT
37722252 GAATAACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 18 0.78
21 4 0.17
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (20 bp):
ATTATTATTATATATTATTG
Found at i:37723086 original size:232 final size:232
Alignment explanation
Indices: 37722729--37723209 Score: 632
Period size: 232 Copynumber: 2.1 Consensus size: 232
37722719 TAATATGATC
* * * *
37722729 ATTATTATCATATATTATTATTTATGATTATAATGCTTGAAATATGCTTTAAGTCCCTATTTCCC
1 ATTATTATCATAAATTATTATTTATGATTATAATGCTTGAAATATGCTCTAAATCCC--TTTCCA
* * * * * *
37722794 TACATTTGAAAGTTAACCCTTCTACTTTATTATATAATTCTATATTATATCATATAGTATATAAT
64 TACATTTGAAAGTTAACCATCCTACTATATTATATAATACCATATCATATCATATAGTATATAAT
*
37722859 ATATTAATAGTTTATATATATATGCATCA-ATGATTAAACATTATAATATAATGTAATATTACAT
129 ATATTAATAG--TATATATATATGAAT-ATATGATTAAACATTATAATATAATGTAATATTACAT
* *
37722923 CTTTTATTACATTCTATAATATAATAGTAGTATAATATAT-TA-
191 C-TTTATTACA-TCAATAATATAATAGTAGTACAATATATATAT
* * *
37722965 ATTATTATCATAAATTATTATTTATTATTATACTGGTTGAAATATGCTCTAAATCCC-TT-CATA
1 ATTATTATCATAAATTATTATTTATGATTATAATGCTTGAAATATGCTCTAAATCCCTTTCCATA
* *
37723028 TATTTGAAAGTTAGCCATCCTACTATATTATATAATACCATA-CAGTATCATATAGTATATAATA
66 CATTTGAAAGTTAACCATCCTACTATATTATATAATACCATATCA-TATCATATAGTATATAATA
* *
37723092 TATTAATAGTATATATATATGAATATATTATTAAACATTATAATATAATGTAATATTATATCTTT
130 TATTAATAGTATATATATATGAATATATGATTAAACATTATAATATAATGTAATATTACATCTTT
* *
37723157 ATTATATCAATAATATAATAGTAGTACATTATATATAT
195 ATTACATCAATAATATAATAGTAGTACAATATATATAT
*
37723195 ATTAGTTATTATAAA
1 ATTA-TTATCATAAA
37723210 AAAATATTAT
Statistics
Matches: 217, Mismatches: 23, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
228 25 0.12
229 11 0.05
230 52 0.24
231 10 0.05
232 66 0.30
233 2 0.01
236 51 0.24
ACGTcount: A:0.40, C:0.09, G:0.06, T:0.45
Consensus pattern (232 bp):
ATTATTATCATAAATTATTATTTATGATTATAATGCTTGAAATATGCTCTAAATCCCTTTCCATA
CATTTGAAAGTTAACCATCCTACTATATTATATAATACCATATCATATCATATAGTATATAATAT
ATTAATAGTATATATATATGAATATATGATTAAACATTATAATATAATGTAATATTACATCTTTA
TTACATCAATAATATAATAGTAGTACAATATATATAT
Found at i:37723111 original size:17 final size:18
Alignment explanation
Indices: 37723079--37723116 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
37723069 ACAGTATCAT
*
37723079 ATAGTATATAATATATTA
1 ATAGTATATAATATATGA
37723097 ATAGTATAT-ATATATGA
1 ATAGTATATAATATATGA
37723114 ATA
1 ATA
37723117 TATTATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (18 bp):
ATAGTATATAATATATGA
Found at i:37723556 original size:248 final size:243
Alignment explanation
Indices: 37723029--37723598 Score: 626
Period size: 248 Copynumber: 2.3 Consensus size: 243
37723019 CCCTTCATAT
* * *
37723029 ATTTGAAAGTTAGCCATCCTACTATATTATATAATACCATACAGTATCATATAGTATATAATATA
1 ATTTGAAAGTTAGTCATCCTACTATATTATATAAT-GC-T--A-TATCATAT--CATATAATATA
* *
37723094 TTAATAGTATATATATATGAATATATTATTAAACATTATAATATAATGTAATATTATATCTTTAT
59 TTAATAGTATATAAATATGAATATATGATTAAACATTATAATATAATGTAATATTATATCTTTAT
* * * *
37723159 TATATCAATAATATAATAGTAGTACATTATATATATATTAGTTATTATAAAAAAATATTATATAT
124 TATATCAATAATATAATAG-AGTACATTATATAAATAGTAGTCATTATAAAAAAATATTACATAT
* * * * *
37723224 TATTGTTTATTACTATATTGGTTGAAATATGCTTTAAGTCCCTATAATTTTTGTAC
188 TATTGTTTATTACTATACTAGTTGAAATATGCTCTAAGTCCCTATAATTTTCGTAA
* * * * *
37723280 ATTTCAAAGTTAATCCTCCTATTATATTATATAATGCTATATCATATCATATAATATGTTAATAG
1 ATTTGAAAGTTAGTCATCCTACTATATTATATAATGCTATATCATATCATATAATATATTAATAG
* * * * *
37723345 TTTATAAATATGCATCA-ATGATTAAACATTATAATATCATGTAATGTTATATTTTTTTATTATA
66 TATATAAATATGAAT-ATATGATTAAACATTATAATATAATGTAATATTATA--TCTTTATTAT-
* * * * *
37723409 ATCTATAATATAATA-A-TA-GTTATATAAATAGTAGTGCATTATATATTACATATTTTTACATA
127 ATCAATAATATAATAGAGTACATTATATAAATAGTAGT-CATTATA-A--A-AAAATATTACATA
* * * * *
37723471 TTTTTGTTTATTATTCTACTAGTTGAAATATGCTCTAAGTCCTTATACTTTTCGTAA
187 TTATTGTTTATTACTATACTAGTTGAAATATGCTCTAAGTCCCTATAATTTTCGTAA
* * *
37723528 ATTTGAAAGTTAGTCATCTTACTATATTATATAATGATATATCATATCATATAATTTATTAATAG
1 ATTTGAAAGTTAGTCATCCTACTATATTATATAATGCTATATCATATCATATAATATATTAATAG
37723593 TATATA
66 TATATA
37723599 TACGTGCATC
Statistics
Matches: 267, Mismatches: 43, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
243 14 0.05
244 67 0.25
245 3 0.01
246 17 0.06
247 16 0.06
248 118 0.44
249 1 0.00
250 1 0.00
251 30 0.11
ACGTcount: A:0.39, C:0.08, G:0.07, T:0.45
Consensus pattern (243 bp):
ATTTGAAAGTTAGTCATCCTACTATATTATATAATGCTATATCATATCATATAATATATTAATAG
TATATAAATATGAATATATGATTAAACATTATAATATAATGTAATATTATATCTTTATTATATCA
ATAATATAATAGAGTACATTATATAAATAGTAGTCATTATAAAAAAATATTACATATTATTGTTT
ATTACTATACTAGTTGAAATATGCTCTAAGTCCCTATAATTTTCGTAA
Found at i:37727215 original size:37 final size:37
Alignment explanation
Indices: 37727174--37727247 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
37727164 GAAGAGCATG
37727174 TACATCTTTTCTATTTTTCCTCAAACTTTGATCACCA
1 TACATCTTTTCTATTTTTCCTCAAACTTTGATCACCA
*
37727211 TACATCTTTTGTATTTTTCCTCAAACTTTGATCACCA
1 TACATCTTTTCTATTTTTCCTCAAACTTTGATCACCA
37727248 AGACTAATTC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.24, C:0.26, G:0.04, T:0.46
Consensus pattern (37 bp):
TACATCTTTTCTATTTTTCCTCAAACTTTGATCACCA
Found at i:37733943 original size:29 final size:29
Alignment explanation
Indices: 37733904--37734110 Score: 154
Period size: 29 Copynumber: 7.2 Consensus size: 29
37733894 TATCGACGAT
* *
37733904 CATCGAATATGAAAACGGATAGTTTCGAC
1 CATCGAATATGAAAAGGGATAGTGTCGAC
* *
37733933 TATCGACTATGAAAAGGGAT-G-GT-GAC
1 CATCGAATATGAAAAGGGATAGTGTCGAC
* * *
37733959 CATC-AACTATGAAAAAGGATGGTGACGAC
1 CATCGAA-TATGAAAAGGGATAGTGTCGAC
*
37733988 CATCGAATATGAAAAGGGATAGTTTCGAC
1 CATCGAATATGAAAAGGGATAGTGTCGAC
* * * * * *
37734017 TATTGATTAATGAAAAGGGATTGTGACAAC
1 CATCGAAT-ATGAAAAGGGATAGTGTCGAC
* *
37734047 CATC-AACTATGAAAAGGGATGGTGACGAC
1 CATCGAA-TATGAAAAGGGATAGTGTCGAC
* * * * *
37734076 AATGGATTAATGAAAAGGGATGGTTTCGAC
1 CATCGAAT-ATGAAAAGGGATAGTGTCGAC
37734106 CATCG
1 CATCG
37734111 TTTAGCACAC
Statistics
Matches: 138, Mismatches: 31, Indels: 17
0.74 0.17 0.09
Matches are distributed among these distances:
25 1 0.01
26 18 0.13
27 2 0.01
28 2 0.01
29 70 0.51
30 45 0.33
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.23
Consensus pattern (29 bp):
CATCGAATATGAAAAGGGATAGTGTCGAC
Found at i:37733999 original size:55 final size:55
Alignment explanation
Indices: 37733911--37734072 Score: 146
Period size: 55 Copynumber: 2.9 Consensus size: 55
37733901 GATCATCGAA
* ** * *
37733911 TATGAAAACGGATAGTTTCGACTATCGACTATGAAAAGGGATGGTGACCATCAAC
1 TATGAAAAAGGATAGTGACGACCATCGAATATGAAAAGGGATGGTGACCATCAAC
* * * ** *
37733966 TATGAAAAAGGATGGTGACGACCATCGAATATGAAAAGGGATAGTTTCGACTATTGAT
1 TATGAAAAAGGATAGTGACGACCATCGAATATGAAAAGGGAT-G-GT-GACCATCAAC
* * *
37734024 TAATGAAAAGGGATTGTGACAACCATC-AACTATGAAAAGGGATGGTGAC
1 T-ATGAAAAAGGATAGTGACGACCATCGAA-TATGAAAAGGGATGGTGAC
37734073 GACAATGGAT
Statistics
Matches: 87, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
55 36 0.41
56 4 0.05
57 2 0.02
58 10 0.11
59 35 0.40
ACGTcount: A:0.38, C:0.13, G:0.25, T:0.23
Consensus pattern (55 bp):
TATGAAAAAGGATAGTGACGACCATCGAATATGAAAAGGGATGGTGACCATCAAC
Found at i:37734108 original size:59 final size:58
Alignment explanation
Indices: 37733898--37734109 Score: 182
Period size: 59 Copynumber: 3.7 Consensus size: 58
37733888 ATGACGTATC
* * * ** * *
37733898 GACGATCATCGAAT-ATGAAAACGGATAGTTTCGACTATCGACTATGAAAAGGGATGGT
1 GACGA-CATCGATTAATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGT
* * * *
37733956 GAC--CATCAACT-ATGAAAAAGGATGGTGACGACCATCGAA-TATGAAAAGGGATAGT
1 GACGACATCGATTAATGAAAAGGGATGGTGACGACCATC-AACTATGAAAAGGGATGGT
** * * *
37734011 TTCGACTATTGATTAATGAAAAGGGATTGTGACAACCATCAACTATGAAAAGGGATGGT
1 GACGAC-ATCGATTAATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGT
* **
37734070 GACGACAATGGATTAATGAAAAGGGATGGTTTCGACCATC
1 GACGAC-ATCGATTAATGAAAAGGGATGGTGACGACCATC
37734110 GTTTAGCACA
Statistics
Matches: 122, Mismatches: 26, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
55 42 0.34
56 1 0.01
57 1 0.01
58 9 0.07
59 69 0.57
ACGTcount: A:0.38, C:0.14, G:0.25, T:0.23
Consensus pattern (58 bp):
GACGACATCGATTAATGAAAAGGGATGGTGACGACCATCAACTATGAAAAGGGATGGT
Found at i:37735797 original size:23 final size:23
Alignment explanation
Indices: 37735744--37735803 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
37735734 TTGGGTTTGT
** *
37735744 TACGAAATGGTAATGTGATTTGG
1 TACGAAATGGTAATACGACTTGG
* *
37735767 TTCAAAATGGTAATACGACTTGG
1 TACGAAATGGTAATACGACTTGG
*
37735790 TACGAAATGTTAAT
1 TACGAAATGGTAAT
37735804 GGTTCAAAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.35, C:0.08, G:0.23, T:0.33
Consensus pattern (23 bp):
TACGAAATGGTAATACGACTTGG
Found at i:37752773 original size:15 final size:15
Alignment explanation
Indices: 37752761--37752800 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
37752751 AATTTAATAG
37752761 CTATGTTTTTAATTAA
1 CTATGTTTTTAATT-A
* *
37752777 TTATTTTTTTAATTA
1 CTATGTTTTTAATTA
37752792 CTATGTTTT
1 CTATGTTTT
37752801 GTTGCTTATA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.25, C:0.05, G:0.05, T:0.65
Consensus pattern (15 bp):
CTATGTTTTTAATTA
Found at i:37754983 original size:5 final size:6
Alignment explanation
Indices: 37754967--37755036 Score: 59
Period size: 6 Copynumber: 11.7 Consensus size: 6
37754957 AACAGCATGT
* ** * **
37754967 GAAAAA GAAAAA GAAAAA TAAAAA GAAATT GCAAAA GAAAAA GAAATC
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA
** *
37755015 GAAAAA GTGAGA GAAAAA GAAA
1 GAAAAA GAAAAA GAAAAA GAAA
37755037 TCGAAGAAAA
Statistics
Matches: 46, Mismatches: 18, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.71, C:0.03, G:0.19, T:0.07
Consensus pattern (6 bp):
GAAAAA
Found at i:37755018 original size:24 final size:24
Alignment explanation
Indices: 37754967--37755041 Score: 69
Period size: 24 Copynumber: 3.1 Consensus size: 24
37754957 AACAGCATGT
* * **
37754967 GAAAAAGAAAAAGAAAAATAAAAA
1 GAAAAAGCAAAAGAAAAAGAAATC
**
37754991 GAAATTGCAAAAGAAAAAGAAATC
1 GAAAAAGCAAAAGAAAAAGAAATC
** *
37755015 GAAAAAGTGAGAGAAAAAGAAATC
1 GAAAAAGCAAAAGAAAAAGAAATC
37755039 GAA
1 GAA
37755042 GAAAAGAAGT
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.69, C:0.04, G:0.19, T:0.08
Consensus pattern (24 bp):
GAAAAAGCAAAAGAAAAAGAAATC
Found at i:37755020 original size:18 final size:18
Alignment explanation
Indices: 37754967--37755021 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 18
37754957 AACAGCATGT
*
37754967 GAAAAAGAAAAAGAAAAA
1 GAAAAAGAAATAGAAAAA
* * *
37754985 TAAAAAGAAATTGCAAAA
1 GAAAAAGAAATAGAAAAA
*
37755003 GAAAAAGAAATCGAAAAA
1 GAAAAAGAAATAGAAAAA
37755021 G
1 G
37755022 TGAGAGAAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.73, C:0.04, G:0.16, T:0.07
Consensus pattern (18 bp):
GAAAAAGAAATAGAAAAA
Found at i:37755020 original size:30 final size:29
Alignment explanation
Indices: 37754969--37755122 Score: 94
Period size: 30 Copynumber: 5.4 Consensus size: 29
37754959 CAGCATGTGA
***
37754969 AAAAGAAAAAGAAAAATAAAAAGAAATTG
1 AAAAGAAAAAGAAATCGAAAAAGAAATTG
37754998 CAAAAGAAAAAGAAATCGAAAAAG----TG
1 -AAAAGAAAAAGAAATCGAAAAAGAAATTG
* *
37755024 -AGAGAAAAAGAAATCGAAGAAAAGAAGTTG
1 AAAAGAAAAAGAAATCG-A-AAAAGAAATTG
* * *
37755054 AAAA-AAAATTGAGATTGAGAAAA-AAATTG
1 AAAAGAAAA-AGAAATCGA-AAAAGAAATTG
*
37755083 AAAAAGAAAAAGATGAT-GAAAAAGAAA-TG
1 -AAAAGAAAAAGA-AATCGAAAAAGAAATTG
37755112 -AAAGAAAAAGA
1 AAAAGAAAAAGA
37755123 GATGAGCGAA
Statistics
Matches: 102, Mismatches: 10, Indels: 27
0.73 0.07 0.19
Matches are distributed among these distances:
24 15 0.15
25 1 0.01
26 7 0.07
27 11 0.11
29 11 0.11
30 43 0.42
31 14 0.14
ACGTcount: A:0.68, C:0.02, G:0.19, T:0.11
Consensus pattern (29 bp):
AAAAGAAAAAGAAATCGAAAAAGAAATTG
Found at i:37755090 original size:16 final size:17
Alignment explanation
Indices: 37755071--37755109 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
37755061 ATTGAGATTG
37755071 AGAAAAAAAT-TGAAAA
1 AGAAAAAAATATGAAAA
*
37755087 AGAAAAAGATGATGAAAA
1 AGAAAAAAAT-ATGAAAA
37755105 AGAAA
1 AGAAA
37755110 TGAAAGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 9 0.45
18 11 0.55
ACGTcount: A:0.72, C:0.00, G:0.18, T:0.10
Consensus pattern (17 bp):
AGAAAAAAATATGAAAA
Found at i:37762767 original size:697 final size:685
Alignment explanation
Indices: 37760845--37762799 Score: 2759
Period size: 684 Copynumber: 2.8 Consensus size: 685
37760835 TGTGTTTTTA
* ** *
37760845 GCAGTCACAATCAGGGATTTACATGATGGATTCCAGTTCAAAGTGAATGGACT-GCGATTGAAAC
1 GCAGTCACAATCAGAGATTTACATGATGGACACCAGTTCAAAGTGAATGGA-TAGCGGTTGAAAC
* *
37760909 ACTATTTTAGGAATATTAATCAAAAGCAGACAAAGACCGTTAAATTGGTCAAAAAATTTTAATTT
65 ACTATTTTAGGAATATTAATCAAAAGCAGGCAAAGACCATTAAATTGGTCAAAAAATTTTAATTT
37760974 TTA-TAGGAA-TTATCATTAT-GTGATTTTATTTTATTGTTTTTGTTCAAGTTTGTTTTACCTTT
130 TTATTA--AATTTATCATTATAGTGATTTTATTTTATTGTTTTTGTTCAAGTTTGTTTTACCTTT
* * *
37761036 TTCTTTTTTTTTGCAAAATAATTAGGTACCATTGTCGACGCACTTGGACTTTATTGTCAGCGCAG
193 TTCTTTTTTTTTGCAAAATAATTAGGTACCATTGTCGACGCACTTGGGCTTTA-TGTCAACGCAT
* * *
37761101 T-TACTATTGTACTACCACTTATGACTCAACAAGAATGAGGGCATATCAGAAATTTTAGATCCTA
257 TCTACTATTGTACTATCACTTATGACTCATCAAGAATGAGGGCATATCAGAAATTTTAGATCCCA
* * * *
37761165 ACGTTTGATTAAAAGTGACCTAGTCGTCTGATTTGTCTGAG-TGGGCGCAATTCTCATTGGACAT
322 CCGTTTGATCAAAAGTGACCTAGTTGTCTGATCTGTCTGAGCT-GGCGCAATTCTCATTGGACAT
37761229 ATTTATTCCCGCCAACTTTATATCCCTTCACAAAAGTCACGCCTTTCCATCTTCTTTCACTACTG
386 ATTTATTCCCGCCAACTTTATATCCCTTCACAAAAGTCACGCCTTTCCATCTTCTTTCACTACTG
* * *
37761294 GAAAGAAAAGGCTATAGGATATCACTGAACTAGAGGAGATTAGGCGAAATG-CTATGAAAACGCT
451 GAAAGAAAAGGCTATTGGATATCACTGAACTAGAGGAGATTAGTCGAAATGCCTATGAAAACACT
* * * * *
37761358 ACAATTTACAAGGAAAAGACCGAACAATGGCATGATAGAATTATTTTGTAGCGACAATTTTTCAC
516 GCAATTTACAAGGAAAAGACCAAACGATGGCATGACAGAATTATTTTGCAGCGACAATTTTTCAC
* *
37761423 GGGTCAACAAGTTTTATTATTCAATTCTAGACTAAAATTGTACCCAGGTAAATTACGCTCACGTT
581 GAGTCAACAAG-TTTATTATTCAATTCTAGACTAAAATTGCACCCAGGTAAATTACGCTCACGTT
* * **
37761488 GGTCTGGACCTTTCGAAGTTGTCAAAGTATTTCCTCATGGT
645 AGTCTGGACCTTTCAAAGTTGTCAAAGTATTTCCTCATAAT
* * * *
37761529 GCAGTCACAATCAGATATTTACATGATAGACACCGGTTCAAAATGAATGGATAGCGGTTGAAACA
1 GCAGTCACAATCAGAGATTTACATGATGGACACCAGTTCAAAGTGAATGGATAGCGGTTGAAACA
* *
37761594 CTATTTT-GGAAATATTAATCAAAAGCAGGTAGAGACCATTAAATTGGTCAAAAAATTTTAATTT
66 CTATTTTAGG-AATATTAATCAAAAGCAGGCAAAGACCATTAAATTGGTCAAAAAATTTTAATTT
* * * ** *
37761658 TTATTGAATTTATCATTA-GGTGATTTTATTTTATTATTTTTGTTCAAGTTTGTTCAAGCTTTTT
130 TTATTAAATTTATCATTATAGTGATTTTATTTTATTGTTTTTGTTCAAGTTTGTTTTACCTTTTT
* * * * *
37761722 C--TTTTTTTGGAAAATAATTAGGTACCATTGTTGACGTACTTGGGCTTTATAGTCAACACGGTT
195 CTTTTTTTTTGCAAAATAATTAGGTACCATTGTCGACGCACTTGGGCTTTAT-GTCAACGC-ATT
* * * *
37761785 CATACTATTATACTATCAATTATGACTCATTAAGCATGAGGGCATATCAGAAATTTTAGATCCCA
258 C-TACTATTGTACTATCACTTATGACTCATCAAGAATGAGGGCATATCAGAAATTTTAGATCCCA
*
37761850 CGGTTTGATCAAAAGTGACCTAGTTGTCTGATCTGTCTGAGC-GAGCGCAATTCTCATTGGACAT
322 CCGTTTGATCAAAAGTGACCTAGTTGTCTGATCTGTCTGAGCTG-GCGCAATTCTCATTGGACAT
* * * * * *
37761914 ATGTATTCCCGCCAACTTTATATCCCTTCACAAAAGCCACGCCTTTCCATATTCTTTTATTACTA
386 ATTTATTCCCGCCAACTTTATATCCCTTCACAAAAGTCACGCCTTTCCATCTTCTTTCACTACTG
* *
37761979 GAAAGAAAAGGCTATTGGATATCACTGAACTAGAGGAGATGAGTCGAAATGCCTATCAAAACACT
451 GAAAGAAAAGGCTATTGGATATCACTGAACTAGAGGAGATTAGTCGAAATGCCTATGAAAACACT
* *
37762044 GCAATTCACAAGGAAAAGACCAAACGATGGCATGACAGAATTATTTTGCAGCGACAATTTATT-G
516 GCAATTTACAAGGAAAAGACCAAACGATGGCATGACAGAATTATTTTGCAGCGACAATTT-TTCA
* * *
37762108 CGAGTCAACAAG-TTATTATTCAATTCTAGACTGAGATTGCACCCAGGTAAATTGCGCTCACGTT
580 CGAGTCAACAAGTTTATTATTCAATTCTAGACTAAAATTGCACCCAGGTAAATTACGCTCACGTT
37762172 AGTCTGGACCTTTCAAAGTTGTCAAAGTATTTCCTCATAAT
645 AGTCTGGACCTTTCAAAGTTGTCAAAGTATTTCCTCATAAT
* * * *
37762213 GTAGTCACAATTAGAGACTTACATGATGGACACCAGTTCAAAGTGAATGGATAGCGGTGGAAACA
1 GCAGTCACAATCAGAGATTTACATGATGGACACCAGTTCAAAGTGAATGGATAGCGGTTGAAACA
* *
37762278 CTATTTTAGGAATATTAATGAAAAGTAGGCAAAGACCATTAAATTGGTCAAAAAATTTTAATTTT
66 CTATTTTAGGAATATTAATCAAAAGCAGGCAAAGACCATTAAATTGGTCAAAAAATTTTAATTTT
*
37762343 TATTAAATTTATCATTATACGATTTTATTTTATTTTATTTTTTTGTTTTTGTTCAAGTTTGTTTT
131 TATTAAATTTATCATTATA-G---TGATTTTATTTTA-----TTGTTTTTGTTCAAGTTTGTTTT
* * *
37762408 ACCTTTTTCTTTTTTTTTTCCAGAATAATTAGGTACCATTGTCGATGCACTTGGGCTTTACTGTC
187 ACCTTTTTC-TTTTTTTTTGCAAAATAATTAGGTACCATTGTCGACGCACTTGGGCTTTA-TGTC
* * * *
37762473 AACGCAATTCGTACTATTGTACTATCACTTATGAGTCATCAAGAATGAGGTCATATAAGAGATTT
250 AACGC-ATTC-TACTATTGTACTATCACTTATGACTCATCAAGAATGAGGGCATATCAGAAATTT
* * * *
37762538 CAAATCCCACCATTTGATCGAAAGTGACCTAGTTGTCTGATCTGTCTGAGCTGGCGCAATTCTCA
313 TAGATCCCACCGTTTGATCAAAAGTGACCTAGTTGTCTGATCTGTCTGAGCTGGCGCAATTCTCA
* * * * *
37762603 TTGGACATTTTTATTCCCGCCAGCTTTATATCCCTTCATAAAAGTCATGCCTTTCTATCTTCTTT
378 TTGGACATATTTATTCCCGCCAACTTTATATCCCTTCACAAAAGTCACGCCTTTCCATCTTCTTT
*
37762668 CACTACTGGAAAGAAAAGGCTATTGGATATCACTGAACTAGAGGAGATTAGTCGCAATGCCTATG
443 CACTACTGGAAAGAAAAGGCTATTGGATATCACTGAACTAGAGGAGATTAGTCGAAATGCCTATG
* **
37762733 AAAACACTGCAATTTACAAGGGAAAGGTCAAACGATGGCATGACAGAATTATTTTGCAGCGACAA
508 AAAACACTGCAATTTACAAGGAAAAGACCAAACGATGGCATGACAGAATTATTTTGCAGCGACAA
37762798 TT
573 TT
37762800 GATACGACCC
Statistics
Matches: 1118, Mismatches: 124, Indels: 45
0.87 0.10 0.03
Matches are distributed among these distances:
681 1 0.00
682 50 0.04
683 6 0.01
684 383 0.34
685 222 0.20
686 77 0.07
687 2 0.00
689 12 0.01
694 28 0.03
697 335 0.30
698 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.34
Consensus pattern (685 bp):
GCAGTCACAATCAGAGATTTACATGATGGACACCAGTTCAAAGTGAATGGATAGCGGTTGAAACA
CTATTTTAGGAATATTAATCAAAAGCAGGCAAAGACCATTAAATTGGTCAAAAAATTTTAATTTT
TATTAAATTTATCATTATAGTGATTTTATTTTATTGTTTTTGTTCAAGTTTGTTTTACCTTTTTC
TTTTTTTTTGCAAAATAATTAGGTACCATTGTCGACGCACTTGGGCTTTATGTCAACGCATTCTA
CTATTGTACTATCACTTATGACTCATCAAGAATGAGGGCATATCAGAAATTTTAGATCCCACCGT
TTGATCAAAAGTGACCTAGTTGTCTGATCTGTCTGAGCTGGCGCAATTCTCATTGGACATATTTA
TTCCCGCCAACTTTATATCCCTTCACAAAAGTCACGCCTTTCCATCTTCTTTCACTACTGGAAAG
AAAAGGCTATTGGATATCACTGAACTAGAGGAGATTAGTCGAAATGCCTATGAAAACACTGCAAT
TTACAAGGAAAAGACCAAACGATGGCATGACAGAATTATTTTGCAGCGACAATTTTTCACGAGTC
AACAAGTTTATTATTCAATTCTAGACTAAAATTGCACCCAGGTAAATTACGCTCACGTTAGTCTG
GACCTTTCAAAGTTGTCAAAGTATTTCCTCATAAT
Found at i:37764674 original size:16 final size:15
Alignment explanation
Indices: 37764630--37764686 Score: 53
Period size: 16 Copynumber: 3.7 Consensus size: 15
37764620 TGGTCTAAAA
37764630 ATTTTAATTTTTATTG
1 ATTTT-ATTTTTATTG
* **
37764646 AATTTATCGTTATGTG
1 ATTTTATTTTTAT-TG
37764662 ATTTTATTTTTATT-
1 ATTTTATTTTTATTG
*
37764676 TTTTTATTTTT
1 ATTTTATTTTT
37764687 GTTCAATTTT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
14 10 0.30
15 7 0.21
16 16 0.48
ACGTcount: A:0.21, C:0.02, G:0.07, T:0.70
Consensus pattern (15 bp):
ATTTTATTTTTATTG
Found at i:37765314 original size:18 final size:18
Alignment explanation
Indices: 37765277--37765315 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
37765267 CTCCAAAGAT
*
37765277 AAAAAGTGCGAGGAGGAG
1 AAAAAGTGCGAGGAGAAG
37765295 AAAAAGTG-GAGGAAGAAG
1 AAAAAGTGCGAGG-AGAAG
37765313 AAA
1 AAA
37765316 CGTCGTGCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.54, C:0.03, G:0.38, T:0.05
Consensus pattern (18 bp):
AAAAAGTGCGAGGAGAAG
Found at i:37767608 original size:33 final size:32
Alignment explanation
Indices: 37767546--37767645 Score: 91
Period size: 33 Copynumber: 3.2 Consensus size: 32
37767536 ACATGCAGTA
* * * * *
37767546 ACAGTCTAGGCCTGAACCCTATTCAGTAACAGT
1 ACAGTGTAGGCCTTAGCCCAATACAGTAA-AGT
* *
37767579 ACAGTGTGGGCCTTAGCCCAATACTGT--A--
1 ACAGTGTAGGCCTTAGCCCAATACAGTAAAGT
37767607 ACAGTGTAGGCCTTAGCCCAATACAGTAATAGT
1 ACAGTGTAGGCCTTAGCCCAATACAGTAA-AGT
37767640 ACAGTG
1 ACAGTG
37767646 CAATAATGCA
Statistics
Matches: 53, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
28 25 0.47
30 1 0.02
31 1 0.02
33 26 0.49
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (32 bp):
ACAGTGTAGGCCTTAGCCCAATACAGTAAAGT
Found at i:37767619 original size:28 final size:28
Alignment explanation
Indices: 37767574--37767635 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
37767564 CTATTCAGTA
*
37767574 ACAGT-ACAGTGTGGGCCTTAGCCCAAT
1 ACAGTAACAGTGTAGGCCTTAGCCCAAT
*
37767601 ACTGTAACAGTGTAGGCCTTAGCCCAAT
1 ACAGTAACAGTGTAGGCCTTAGCCCAAT
37767629 ACAGTAA
1 ACAGTAA
37767636 TAGTACAGTG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
27 4 0.13
28 27 0.87
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.23
Consensus pattern (28 bp):
ACAGTAACAGTGTAGGCCTTAGCCCAAT
Found at i:37767953 original size:27 final size:27
Alignment explanation
Indices: 37767933--37768074 Score: 203
Period size: 27 Copynumber: 5.3 Consensus size: 27
37767923 GGGTATAACA
*
37767933 GTCATTTTACCTTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
37767960 GTCATTTTACCCTATGGGGGTATCTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
37767987 GTCATTTTATCCTATAGGAGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
37768014 ATCATTTTACCCTATGGGGGTATTCCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
37768041 GTCATTTTACCCTATAGGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
37768068 GTCATTT
1 GTCATTT
37768075 ATTAACCTCT
Statistics
Matches: 100, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:37775541 original size:42 final size:40
Alignment explanation
Indices: 37775495--37775574 Score: 97
Period size: 42 Copynumber: 1.9 Consensus size: 40
37775485 GGGTAAATCC
* *
37775495 AACAACCCATGTTTATCTTCTTCTCTTTTTAAAATTTTTTTA
1 AACAACCCAAGATTATCTTC-TC-CTTTTTAAAATTTTTTTA
** *
37775537 AACAACTTAAGATTATCTTCTCCTTTTTAATATTTTTT
1 AACAACCCAAGATTATCTTCTCCTTTTTAAAATTTTTT
37775575 CTTGGACAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
40 15 0.45
41 2 0.06
42 16 0.48
ACGTcount: A:0.28, C:0.17, G:0.03, T:0.53
Consensus pattern (40 bp):
AACAACCCAAGATTATCTTCTCCTTTTTAAAATTTTTTTA
Found at i:37775893 original size:21 final size:21
Alignment explanation
Indices: 37775868--37775911 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
37775858 GCAGTGATAA
*
37775868 AAAATACTAGTAAAATGT-CCT
1 AAAATACTACT-AAATGTACCT
*
37775889 AAAATGCTACTAAATGTACCT
1 AAAATACTACTAAATGTACCT
37775910 AA
1 AA
37775912 GTACAAGCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.48, C:0.16, G:0.09, T:0.27
Consensus pattern (21 bp):
AAAATACTACTAAATGTACCT
Found at i:37782769 original size:52 final size:52
Alignment explanation
Indices: 37782712--37782928 Score: 251
Period size: 52 Copynumber: 4.2 Consensus size: 52
37782702 ATCAAAAATA
* * *
37782712 TTATGAATGCAACTAAACAAACAATGAAACATAATTAAAAACACCACTTAAT
1 TTATGAATGCAACTAAACAAACAATGAAGCATAAATAAAAACACAACTTAAT
** * * *
37782764 TTATGAATATAACTAAACAATA-ATTTAAGCA-AAACTAAAAACACGACTTTAA-
1 TTATGAATGCAACTAAACAA-ACAATGAAGCATAAA-TAAAAACACAAC-TTAAT
* * * *
37782816 TTATGAATACAACAAAACAATCAATGAAGCATAAATAAAAACACAACTTTAT
1 TTATGAATGCAACTAAACAAACAATGAAGCATAAATAAAAACACAACTTAAT
* * *
37782868 TTATGAATGCAACGAAACAAGCAATGAAGCATAAATAAAAACACAACTTTAT
1 TTATGAATGCAACTAAACAAACAATGAAGCATAAATAAAAACACAACTTAAT
37782920 TTATGAATG
1 TTATGAATG
37782929 AAAATATGCT
Statistics
Matches: 142, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
51 5 0.04
52 129 0.91
53 8 0.06
ACGTcount: A:0.53, C:0.15, G:0.08, T:0.24
Consensus pattern (52 bp):
TTATGAATGCAACTAAACAAACAATGAAGCATAAATAAAAACACAACTTAAT
Found at i:37783315 original size:38 final size:38
Alignment explanation
Indices: 37783273--37783347 Score: 150
Period size: 38 Copynumber: 2.0 Consensus size: 38
37783263 TTAACCCACC
37783273 CTCATGAGCTTCCTTAACAAATAACTCCCGTAAAAAAA
1 CTCATGAGCTTCCTTAACAAATAACTCCCGTAAAAAAA
37783311 CTCATGAGCTTCCTTAACAAATAACTCCCGTAAAAAA
1 CTCATGAGCTTCCTTAACAAATAACTCCCGTAAAAAA
37783348 CTCTTATGCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.41, C:0.27, G:0.08, T:0.24
Consensus pattern (38 bp):
CTCATGAGCTTCCTTAACAAATAACTCCCGTAAAAAAA
Found at i:37783483 original size:27 final size:28
Alignment explanation
Indices: 37783453--37783505 Score: 65
Period size: 27 Copynumber: 1.9 Consensus size: 28
37783443 CTTTTTCTCG
37783453 CTCACCCTC-TCTTTCT-TTTTCTTTTTT
1 CTCACCCTCAT-TTTCTCTTTTCTTTTTT
**
37783480 CTCATGCTCATTTTCTCTTTTCTTTT
1 CTCACCCTCATTTTCTCTTTTCTTTT
37783506 ATTTCTCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 12 0.55
28 10 0.45
ACGTcount: A:0.06, C:0.30, G:0.02, T:0.62
Consensus pattern (28 bp):
CTCACCCTCATTTTCTCTTTTCTTTTTT
Found at i:37783510 original size:16 final size:17
Alignment explanation
Indices: 37783491--37783522 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
37783481 TCATGCTCAT
37783491 TTTCTC-TTTTCTTTTA
1 TTTCTCTTTTTCTTTTA
37783507 TTTCTCTTTTTCTTTT
1 TTTCTCTTTTTCTTTT
37783523 TTCTTTGCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTCTCTTTTTCTTTTA
Found at i:37783524 original size:24 final size:23
Alignment explanation
Indices: 37783469--37783546 Score: 79
Period size: 24 Copynumber: 3.4 Consensus size: 23
37783459 CTCTCTTTCT
*
37783469 TTTTCTTTTTTC--TCATGCTCA
1 TTTTCTTTTTTCTTTCATTCTCA
* * *
37783490 TTTTCTCTTTTCTTTTATTTCTCT
1 TTTTCTTTTTTCTTTCA-TTCTCA
*
37783514 TTTTCTTTTTTCTTTGCCTTCTCA
1 TTTTCTTTTTTCTTT-CATTCTCA
37783538 TTTTCTTTT
1 TTTTCTTTT
37783547 GTCTCTTACT
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
21 11 0.24
23 2 0.04
24 32 0.71
ACGTcount: A:0.05, C:0.22, G:0.03, T:0.71
Consensus pattern (23 bp):
TTTTCTTTTTTCTTTCATTCTCA
Found at i:37783541 original size:17 final size:20
Alignment explanation
Indices: 37783521--37783564 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
37783511 TCTTTTTCTT
37783521 TTTTCTTTG-C-CTT-CTCA
1 TTTTCTTTGTCTCTTACTCA
37783538 TTTTCTTTTGTCTCTTACTCA
1 TTTTC-TTTGTCTCTTACTCA
37783559 TTTTCT
1 TTTTCT
37783565 GTTGATTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 1 0.04
20 4 0.17
21 9 0.39
ACGTcount: A:0.07, C:0.25, G:0.05, T:0.64
Consensus pattern (20 bp):
TTTTCTTTGTCTCTTACTCA
Found at i:37789265 original size:8 final size:8
Alignment explanation
Indices: 37789254--37789279 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
37789244 ATAAAAATTC
37789254 AAAATAAT
1 AAAATAAT
37789262 AAAATAAT
1 AAAATAAT
37789270 AAAATAAT
1 AAAATAAT
37789278 AA
1 AA
37789280 GAGCTGATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AAAATAAT
Found at i:37794386 original size:78 final size:78
Alignment explanation
Indices: 37794254--37794422 Score: 239
Period size: 78 Copynumber: 2.2 Consensus size: 78
37794244 GTCCTTAAAG
* * * *
37794254 AAATTAATTGATCGGTTTTGACATTTGGAGTTCCCGAACAGCCATTGGAGTGGACTTAAAAGTTA
1 AAATTAATTGATCAGCTTTGACATTTGGAGTTCCCGAACAACCATTGGAATGGACTTAAAAGTTA
* *
37794319 AGCTGAATGAATA
66 AGCTAAATAAATA
** *
37794332 AAATTAATTGATCAGCTTTGACATTTGGAGTTCCCGAACAACCATTGGAATGGACTTAGGAGTTG
1 AAATTAATTGATCAGCTTTGACATTTGGAGTTCCCGAACAACCATTGGAATGGACTTAAAAGTTA
*
37794397 AGCTAAATAAATC
66 AGCTAAATAAATA
*
37794410 AAATTATTTGATC
1 AAATTAATTGATC
37794423 GGTCAATGGT
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
78 80 1.00
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (78 bp):
AAATTAATTGATCAGCTTTGACATTTGGAGTTCCCGAACAACCATTGGAATGGACTTAAAAGTTA
AGCTAAATAAATA
Found at i:37798962 original size:11 final size:11
Alignment explanation
Indices: 37798946--37798977 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
37798936 GGTTCGTAAC
37798946 GTCAAAAAAAA
1 GTCAAAAAAAA
37798957 GTCAAAAAAAA
1 GTCAAAAAAAA
37798968 -TCAAAAAAAA
1 GTCAAAAAAAA
37798978 TTTTGAGTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.75, C:0.09, G:0.06, T:0.09
Consensus pattern (11 bp):
GTCAAAAAAAA
Found at i:37798965 original size:10 final size:10
Alignment explanation
Indices: 37798947--37798978 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
37798937 GTTCGTAACG
37798947 TCAAAAAAAA
1 TCAAAAAAAA
37798957 GTCAAAAAAAA
1 -TCAAAAAAAA
37798968 TCAAAAAAAA
1 TCAAAAAAAA
37798978 T
1 T
37798979 TTTGAGTTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 11 0.52
11 10 0.48
ACGTcount: A:0.75, C:0.09, G:0.03, T:0.12
Consensus pattern (10 bp):
TCAAAAAAAA
Found at i:37800192 original size:18 final size:18
Alignment explanation
Indices: 37800166--37800251 Score: 73
Period size: 18 Copynumber: 4.6 Consensus size: 18
37800156 AAATTGAAAG
*
37800166 AAAACAAAAAGAAAACGA
1 AAAAGAAAAAGAAAACGA
*
37800184 AAAAGAAAAAGAAATCGA
1 AAAAGAAAAAGAAAACGA
** * *
37800202 AAAAGTGAGAGAAAAAGA
1 AAAAGAAAAAGAAAACGA
* *
37800220 AAATGAAGAAAAGAAAATTGA
1 AAAAG-A-AAAAGAAAA-CGA
37800241 AAAAGAAAAAG
1 AAAAGAAAAAG
37800252 TGAAAAAAGA
Statistics
Matches: 52, Mismatches: 13, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
18 33 0.63
19 5 0.10
20 8 0.15
21 6 0.12
ACGTcount: A:0.72, C:0.03, G:0.19, T:0.06
Consensus pattern (18 bp):
AAAAGAAAAAGAAAACGA
Found at i:37800194 original size:6 final size:6
Alignment explanation
Indices: 37800162--37800251 Score: 65
Period size: 6 Copynumber: 14.7 Consensus size: 6
37800152 AAGGAAATTG
* * ** **
37800162 AAAG-A AAACAA AAAGAA AACGAA AAAGAA AAAGAA ATCGAA AAAGTG
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
* * *
37800209 AGAGAA AAAGAA AATGAAGA AAAGAA AATTGAA AAAGAA AAAG
1 AAAGAA AAAGAA AAAG-A-A AAAGAA AA-AGAA AAAGAA AAAG
37800252 TGAAAAAAGA
Statistics
Matches: 63, Mismatches: 18, Indels: 7
0.72 0.20 0.08
Matches are distributed among these distances:
5 3 0.05
6 49 0.78
7 7 0.11
8 4 0.06
ACGTcount: A:0.72, C:0.03, G:0.19, T:0.06
Consensus pattern (6 bp):
AAAGAA
Found at i:37800242 original size:27 final size:27
Alignment explanation
Indices: 37800212--37800269 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 27
37800202 AAAAGTGAGA
37800212 GAAAAAG-AAAA-TGAAGAAAAGAAAATT
1 GAAAAAGAAAAAGTGAA-AAAAG-AAATT
37800239 GAAAAAGAAAAAGTGAAAAAAGAAATT
1 GAAAAAGAAAAAGTGAAAAAAGAAATT
37800266 GAAA
1 GAAA
37800270 GAGAGCTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
27 16 0.55
28 9 0.31
29 4 0.14
ACGTcount: A:0.71, C:0.00, G:0.19, T:0.10
Consensus pattern (27 bp):
GAAAAAGAAAAAGTGAAAAAAGAAATT
Found at i:37800258 original size:15 final size:13
Alignment explanation
Indices: 37800213--37800269 Score: 62
Period size: 14 Copynumber: 4.2 Consensus size: 13
37800203 AAAGTGAGAG
37800213 AAAAAGAAAATGA
1 AAAAAGAAAATGA
37800226 AGAAAAGAAAATTG-
1 A-AAAAGAAAA-TGA
37800240 AAAAAGAAAAAGTGA
1 AAAAAG-AAAA-TGA
*
37800255 AAAAAGAAATTGA
1 AAAAAGAAAATGA
37800268 AA
1 AA
37800270 GAGAGCTTGA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
13 11 0.29
14 19 0.50
15 8 0.21
ACGTcount: A:0.72, C:0.00, G:0.18, T:0.11
Consensus pattern (13 bp):
AAAAAGAAAATGA
Found at i:37800259 original size:42 final size:42
Alignment explanation
Indices: 37800171--37800269 Score: 105
Period size: 42 Copynumber: 2.4 Consensus size: 42
37800161 GAAAGAAAAC
* **
37800171 AAAAAGAAAACG-AAAAAGAAAAAGAAATCGAAAAAGTGAGAG
1 AAAAAGAAAATGAAAAAAGAAAAAGAAAAAGAAAAAGT-AGAG
*
37800213 AAAAAGAAAATGAAGAAAAGAAAATTGAAAAAGAAAAAGT-GA-
1 AAAAAGAAAATGAA-AAAAGAAAA-AGAAAAAGAAAAAGTAGAG
*
37800255 AAAAAGAAATTGAAA
1 AAAAAGAAAATGAAA
37800270 GAGAGCTTGA
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
41 1 0.02
42 24 0.49
43 3 0.06
44 9 0.18
45 12 0.24
ACGTcount: A:0.71, C:0.02, G:0.19, T:0.08
Consensus pattern (42 bp):
AAAAAGAAAATGAAAAAAGAAAAAGAAAAAGAAAAAGTAGAG
Found at i:37800303 original size:33 final size:33
Alignment explanation
Indices: 37800266--37800328 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
37800256 AAAAGAAATT
37800266 GAAAGAGAGCT-TG-AAAAGAAATCAAGTGAAAAA
1 GAAAGAGAG-TATGTAAAAGAAA-CAAGTGAAAAA
37800299 GAAAGAGAGTATGTAAAAGAAACAAGTGAA
1 GAAAGAGAGTATGTAAAAGAAACAAGTGAA
37800329 GTGAGTAATC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
32 1 0.04
33 19 0.68
34 8 0.29
ACGTcount: A:0.57, C:0.05, G:0.25, T:0.13
Consensus pattern (33 bp):
GAAAGAGAGTATGTAAAAGAAACAAGTGAAAAA
Found at i:37805731 original size:24 final size:24
Alignment explanation
Indices: 37805683--37805729 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
37805673 ATTGGTCATA
*
37805683 GAGAGAATTGAGGAGGGATATTTG
1 GAGAGAATTGAGGAGGAATATTTG
*
37805707 GAGAGATTTGAGGAGAGAATATT
1 GAGAGAATTGAGGAG-GAATATT
37805730 GGGATTTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.36, C:0.00, G:0.38, T:0.26
Consensus pattern (24 bp):
GAGAGAATTGAGGAGGAATATTTG
Found at i:37806830 original size:27 final size:26
Alignment explanation
Indices: 37806799--37807373 Score: 643
Period size: 27 Copynumber: 21.4 Consensus size: 26
37806789 CTAATAGATG
*
37806799 AAAATGACTAAAATACCTCCATAGGGT
1 AAAATGACTGAAATACC-CCATAGGGT
37806826 AAAATGACTGAAATACCCCCATAGGGT
1 AAAATGACTGAAATA-CCCCATAGGGT
*
37806853 AAAATGACTGAAATAATCCCATAGGGT
1 AAAATGACTGAAAT-ACCCCATAGGGT
37806880 AAAATGA-TCGAAATACCCCCATAGGGT
1 AAAATGACT-GAAATA-CCCCATAGGGT
* *
37806907 AAAATGGCTGAAATACCCTCATAAGGT
1 AAAATGACTGAAATACCC-CATAGGGT
*
37806934 AAAATGACCGAAATACCCCCATAGGGT
1 AAAATGACTGAAATA-CCCCATAGGGT
* * *
37806961 AAAATGGCTAAAATACCCTCATAAGGT
1 AAAATGACTGAAATACCC-CATAGGGT
**
37806988 AAAATGACCAAAATACCCCCATAGGGT
1 AAAATGACTGAAATA-CCCCATAGGGT
*
37807015 AAAATGATTGAAATACACCCATAGGGT
1 AAAATGACTGAAATAC-CCCATAGGGT
** **
37807042 AAAATGACCAAAATACCCCTATAGCAT
1 AAAATGACTGAAATACCCC-ATAGGGT
37807069 AAAATGACTGAAATACCCCCATAGGGT
1 AAAATGACTGAAATA-CCCCATAGGGT
* *
37807096 AAGATGACCGAAATACCCCCATAGGGT
1 AAAATGACTGAAATA-CCCCATAGGGT
* ** *
37807123 AAGATGACCAAAATACCCCATAAGGT
1 AAAATGACTGAAATACCCCATAGGGT
*
37807149 AAAATGACCGAAATACCCTCATAGGGT
1 AAAATGACTGAAATACCC-CATAGGGT
*
37807176 AAAATGATTGAAATAACCCCATAGGGT
1 AAAATGACTGAAAT-ACCCCATAGGGT
*
37807203 AAAATGA-TCAAAATACCCCCATAGGGT
1 AAAATGACT-GAAATA-CCCCATAGGGT
** *
37807230 AAAATGACCAAAATACCCCATAAGGT
1 AAAATGACTGAAATACCCCATAGGGT
*
37807256 AAAATGACCGAAATACCCTCATAGGGT
1 AAAATGACTGAAATACCC-CATAGGGT
**
37807283 AAAATGACCAAAATACCTCCATAGGGT
1 AAAATGACTGAAATACC-CCATAGGGT
*
37807310 AAAATGA-TCGAAATACCCCTATAGGAT
1 AAAATGACT-GAAATACCCC-ATAGGGT
*
37807337 AAAATGACCGAAATACCCCCATAGGGT
1 AAAATGACTGAAATA-CCCCATAGGGT
37807364 AAAATGACTG
1 AAAATGACTG
37807374 TTATAACCCT
Statistics
Matches: 477, Mismatches: 48, Indels: 46
0.84 0.08 0.08
Matches are distributed among these distances:
26 69 0.14
27 385 0.81
28 23 0.05
ACGTcount: A:0.43, C:0.21, G:0.17, T:0.19
Consensus pattern (26 bp):
AAAATGACTGAAATACCCCATAGGGT
Found at i:37806911 original size:81 final size:81
Alignment explanation
Indices: 37806799--37807371 Score: 751
Period size: 81 Copynumber: 7.1 Consensus size: 81
37806789 CTAATAGATG
* * *
37806799 AAAATGACTAAAATACCTCCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACTGA
1 AAAATGACCAAAATACCCCCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACCGA
*
37806864 AATAATCCCATAGGGT
66 AATAACCCCATAGGGT
* * * * *
37806880 AAAATGATCGAAATACCCCCATAGGGTAAAATGGCTGAAATACCCTCATAAGGTAAAATGACCGA
1 AAAATGACCAAAATACCCCCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACCGA
*
37806945 AATACCCCCATAGGGT
66 AATAACCCCATAGGGT
* * * * ** **
37806961 AAAATGGCTAAAATACCCTCATAAGGTAAAATGACCAAAATACCCCCATAGGGTAAAATGATTGA
1 AAAATGACCAAAATACCCCCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACCGA
37807026 AAT-ACACCCATAGGGT
66 AATAAC-CCCATAGGGT
* ** *
37807042 AAAATGACCAAAATACCCCTATAGCATAAAATGACTGAAATACCCCCATAGGGTAAGATGACCGA
1 AAAATGACCAAAATACCCCCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACCGA
*
37807107 AATACCCCCATAGGGT
66 AATAACCCCATAGGGT
* * * * **
37807123 AAGATGACCAAAATA-CCCCATAAGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGATTGA
1 AAAATGACCAAAATACCCCCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACCGA
37807187 AATAACCCCATAGGGT
66 AATAACCCCATAGGGT
* ** *
37807203 AAAATGATCAAAATACCCCCATAGGGTAAAATGACCAAAATA-CCCCATAAGGTAAAATGACCGA
1 AAAATGACCAAAATACCCCCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACCGA
37807267 AAT-ACCCTCATAGGGT
66 AATAACCC-CATAGGGT
* * *
37807283 AAAATGACCAAAATACCTCCATAGGGTAAAATGA-TCGAAATACCCCTATAGGATAAAATGACCG
1 AAAATGACCAAAATACCCCCATAGGGTAAAATGACT-GAAATACCCCCATAGGGTAAAATGACCG
*
37807347 AAATACCCCCATAGGGT
65 AAATAACCCCATAGGGT
37807364 AAAATGAC
1 AAAATGAC
37807372 TGTTATAACC
Statistics
Matches: 421, Mismatches: 64, Indels: 14
0.84 0.13 0.03
Matches are distributed among these distances:
79 4 0.01
80 135 0.32
81 278 0.66
82 4 0.01
ACGTcount: A:0.43, C:0.21, G:0.17, T:0.19
Consensus pattern (81 bp):
AAAATGACCAAAATACCCCCATAGGGTAAAATGACTGAAATACCCCCATAGGGTAAAATGACCGA
AATAACCCCATAGGGT
Found at i:37807397 original size:54 final size:54
Alignment explanation
Indices: 37806799--37807371 Score: 763
Period size: 54 Copynumber: 10.6 Consensus size: 54
37806789 CTAATAGATG
* * *
37806799 AAAATGACTAAAATACCTCCATAGGGTAAAATGACTGAAATACCCCCATAGGGT
1 AAAATGACTGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGT
** *
37806853 AAAATGACTGAAATAATCCCATAGGGTAAAATGATCGAAATACCCCCATAGGGT
1 AAAATGACTGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGT
* * *
37806907 AAAATGGCTGAAATACCCTCATAAGGTAAAATGACCGAAATACCCCCATAGGGT
1 AAAATGACTGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGT
* * * * *
37806961 AAAATGGCTAAAATACCCTCATAAGGTAAAATGACCAAAATACCCCCATAGGGT
1 AAAATGACTGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGT
* * * * **
37807015 AAAATGATTGAAATACACCCATAGGGTAAAATGACCAAAATACCCCTATAGCAT
1 AAAATGACTGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGT
*
37807069 AAAATGACTGAAATACCCCCATAGGGTAAGATGACCGAAATACCCCCATAGGGT
1 AAAATGACTGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGT
* ** * *
37807123 AAGATGACCAAAATA-CCCCATAAGGTAAAATGACCGAAATACCCTCATAGGGT
1 AAAATGACTGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGT
* * * *
37807176 AAAATGATTGAAATAACCCCATAGGGTAAAATGATCAAAATACCCCCATAGGGT
1 AAAATGACTGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGT
** * *
37807230 AAAATGACCAAAATA-CCCCATAAGGTAAAATGACCGAAATACCCTCATAGGGT
1 AAAATGACTGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGT
** * * * *
37807283 AAAATGACCAAAATACCTCCATAGGGTAAAATGATCGAAATACCCCTATAGGAT
1 AAAATGACTGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGT
*
37807337 AAAATGACCGAAATACCCCCATAGGGTAAAATGAC
1 AAAATGACTGAAATACCCCCATAGGGTAAAATGAC
37807372 TGTTATAACC
Statistics
Matches: 457, Mismatches: 60, Indels: 4
0.88 0.12 0.01
Matches are distributed among these distances:
53 95 0.21
54 362 0.79
ACGTcount: A:0.43, C:0.21, G:0.17, T:0.19
Consensus pattern (54 bp):
AAAATGACTGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGT
Found at i:37807641 original size:26 final size:26
Alignment explanation
Indices: 37807612--37807685 Score: 103
Period size: 26 Copynumber: 2.8 Consensus size: 26
37807602 CATATACTGT
*
37807612 TACTAGCAGCTTTGCTACGATACTAA
1 TACTGGCAGCTTTGCTACGATACTAA
* * *
37807638 TACTGGCAGCTCTGCTACGATGCTAT
1 TACTGGCAGCTTTGCTACGATACTAA
*
37807664 TACTGGCAGCTTTGCTGCGATA
1 TACTGGCAGCTTTGCTACGATA
37807686 TTCATGTGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.31
Consensus pattern (26 bp):
TACTGGCAGCTTTGCTACGATACTAA
Found at i:37807835 original size:28 final size:28
Alignment explanation
Indices: 37807787--37807960 Score: 287
Period size: 28 Copynumber: 6.2 Consensus size: 28
37807777 TATTGCACTG
37807787 CACTGTTACTGTATTGGGCTAAGGCCCA
1 CACTGTTACTGTATTGGGCTAAGGCCCA
*
37807815 CATTGATT-CTGTATTGGGCTAAGGCCCA
1 CACTG-TTACTGTATTGGGCTAAGGCCCA
*
37807843 CACTGTTACTGTATTAGGCTAAGGCCCA
1 CACTGTTACTGTATTGGGCTAAGGCCCA
* *
37807871 CACTGTTATTGTATTAGGCTAAGGCCCA
1 CACTGTTACTGTATTGGGCTAAGGCCCA
37807899 CACTGTTACTGTATTGGGCTAAGGCCCA
1 CACTGTTACTGTATTGGGCTAAGGCCCA
*
37807927 CACTGTTACTGTATTGGGCTAAAGCCCA
1 CACTGTTACTGTATTGGGCTAAGGCCCA
37807955 CACTGT
1 CACTGT
37807961 ACTATCACTT
Statistics
Matches: 137, Mismatches: 7, Indels: 4
0.93 0.05 0.03
Matches are distributed among these distances:
27 2 0.01
28 133 0.97
29 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.30
Consensus pattern (28 bp):
CACTGTTACTGTATTGGGCTAAGGCCCA
Found at i:37809435 original size:8 final size:8
Alignment explanation
Indices: 37809422--37809457 Score: 72
Period size: 8 Copynumber: 4.5 Consensus size: 8
37809412 TACGTATGTC
37809422 TTTTAAAT
1 TTTTAAAT
37809430 TTTTAAAT
1 TTTTAAAT
37809438 TTTTAAAT
1 TTTTAAAT
37809446 TTTTAAAT
1 TTTTAAAT
37809454 TTTT
1 TTTT
37809458 TTTAAAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (8 bp):
TTTTAAAT
Found at i:37810209 original size:30 final size:29
Alignment explanation
Indices: 37810167--37810223 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
37810157 TTAGTTAGAC
37810167 ATGATAATACATA-TAAAAATATAAAAATA
1 ATGATAATACATACT-AAAATATAAAAATA
*
37810196 ATGATACATACATACTAATATATAAAAA
1 ATGATA-ATACATACTAAAATATAAAAA
37810224 AGTAACTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 6 0.24
30 18 0.72
31 1 0.04
ACGTcount: A:0.61, C:0.07, G:0.04, T:0.28
Consensus pattern (29 bp):
ATGATAATACATACTAAAATATAAAAATA
Found at i:37810477 original size:11 final size:11
Alignment explanation
Indices: 37810456--37810493 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
37810446 ATGAAAAGAG
37810456 AAAATA-AAAA
1 AAAATACAAAA
37810466 AACAATACAAAA
1 AA-AATACAAAA
37810478 AAAATATCAAAA
1 AAAATA-CAAAA
37810490 AAAA
1 AAAA
37810494 ATATTCAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 2 0.08
11 8 0.32
12 15 0.60
ACGTcount: A:0.82, C:0.08, G:0.00, T:0.11
Consensus pattern (11 bp):
AAAATACAAAA
Found at i:37810501 original size:14 final size:13
Alignment explanation
Indices: 37810461--37810502 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
37810451 AAGAGAAAAT
37810461 AAAAAAACAATA-C
1 AAAAAAA-AATATC
37810474 -AAAAAAAATATC
1 AAAAAAAAATATC
37810486 AAAAAAAAATATTC
1 AAAAAAAAATA-TC
37810500 AAA
1 AAA
37810503 TTACAATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
11 4 0.15
12 7 0.27
13 10 0.38
14 5 0.19
ACGTcount: A:0.76, C:0.10, G:0.00, T:0.14
Consensus pattern (13 bp):
AAAAAAAAATATC
Found at i:37812473 original size:199 final size:199
Alignment explanation
Indices: 37812114--37813463 Score: 2191
Period size: 199 Copynumber: 6.8 Consensus size: 199
37812104 TTTAATATGC
* * * * * * * * *
37812114 TTAACTGTAATGTCCAGGAAGCAAGATTCATCGTTGTGG-TTTCAATCTGTTCCATTGCACCGTC
1 TTAACTGCAATGT-CGGGGAGCAAGATTCACCGATGTGGCTTT-AATATGTTCCACTGCATCGCC
*
37812178 TGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTC
64 TGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTC
* * *
37812243 ACCGATGTGGCTTTAATCTGTTCCACCGCATCGCCTGGGGAATAAGATTCGTTGTTGTAGTTTTA
129 ACCGATGTGGCTTTAATATGTTCCACCGCATCGCCTGGGGAATAAGATTCGCTGTTGTAGCTTTA
37812308 ATCTTT
194 ATCTTT
* * *
37812314 TTAACCGCAATGTCGGGGAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCACCTT
1 TTAACTGCAATGTCGGGGAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCTG
*
37812379 GGGAGTAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCAC
66 GGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCAC
* *
37812444 CGATGTGGCTTTAATTTGTTCCACCGCATCGCCTGGGGAGTAAGATTCGCTGTTGTAGCTTTAAT
131 CGATGTGGCTTTAATATGTTCCACCGCATCGCCTGGGGAATAAGATTCGCTGTTGTAGCTTTAAT
37812509 CTTT
196 CTTT
* *
37812513 TTAACTGCAATGTCGGGGAGCAAGATTCACCAATGTGGCTTTAATATGTTCCACTGCATCTCCTG
1 TTAACTGCAATGTCGGGGAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCTG
*
37812578 GGGAGTAAGATTCGCTGTTGCAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCAC
66 GGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCAC
* *
37812643 CGATGTGGCTTTAATATGTTCCACCACATCGCCTGGGGAATAAGAATCGCTGTTGTAGCTTTAAT
131 CGATGTGGCTTTAATATGTTCCACCGCATCGCCTGGGGAATAAGATTCGCTGTTGTAGCTTTAAT
37812708 CTTT
196 CTTT
* *
37812712 TTAACTGCAATGTCGGGGAGCAAGATTCACCGATGTGGCTTTAATATGTTCCATTGCATCGCCTT
1 TTAACTGCAATGTCGGGGAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCTG
* *
37812777 GGGAGTAAGGTTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCAC
66 GGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCAC
* * *
37812842 CGATGTGGCTTTAATTTGTTCCACAGCATCGCCTGGGGAGTAAGATTCGCTGTTGTAGCTTTAAT
131 CGATGTGGCTTTAATATGTTCCACCGCATCGCCTGGGGAATAAGATTCGCTGTTGTAGCTTTAAT
37812907 CTTT
196 CTTT
*
37812911 TTAACTGCAATGTCGGGGAGCAAGATTCACCAATGTGGCTTTAATATGTTCCACTGCATCGCCTG
1 TTAACTGCAATGTCGGGGAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCTG
* *
37812976 GGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCGATGTCGGGGAAGCAAGATTCAT
66 GGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCAC
* *
37813041 CGATGTGGCTTTAATATGTTCCACCACATCGCCTGGGGAATAAGATTCACTGTTGTAGCTTTAAT
131 CGATGTGGCTTTAATATGTTCCACCGCATCGCCTGGGGAATAAGATTCGCTGTTGTAGCTTTAAT
37813106 CTTT
196 CTTT
* * *
37813110 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACCGCATCACCT
1 TTAACTGCAATGTCGGGG-AGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
* **
37813175 GGGGAGTAAGATTCGCTATTGTAGCTTTAATAATTTTAACTGCAATGTCGGGG-AGCAAGATTCA
65 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCA
* * * * *
37813239 CCAATGTGGCTTTAATATGTTCCACTGCATCGCCTGGGGAGTAATATTCACTGTTGTAGCTTTAA
130 CCGATGTGGCTTTAATATGTTCCACCGCATCGCCTGGGGAATAAGATTCGCTGTTGTAGCTTTAA
37813304 TCTTT
195 TCTTT
* * *
37813309 TTAACTGCAATGTTGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCGACTGCATCGCCT
1 TTAACTGCAATGTCGGGG-AGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
*
37813374 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCA
65 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCA
37813439 CCGATGTGGCTTTAATATGTTCCAC
130 CCGATGTGGCTTTAATATGTTCCAC
37813464 TGTATCACCA
Statistics
Matches: 1072, Mismatches: 75, Indels: 6
0.93 0.07 0.01
Matches are distributed among these distances:
199 932 0.87
200 140 0.13
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (199 bp):
TTAACTGCAATGTCGGGGAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCTG
GGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCAC
CGATGTGGCTTTAATATGTTCCACCGCATCGCCTGGGGAATAAGATTCGCTGTTGTAGCTTTAAT
CTTT
Found at i:37812641 original size:299 final size:299
Alignment explanation
Indices: 37812114--37813463 Score: 2184
Period size: 299 Copynumber: 4.5 Consensus size: 299
37812104 TTTAATATGC
* ** * * * * * *
37812114 TTAACTGTAATGTCCAGGAAGCAAGATTCATCGTTGTGG-TTTCAATCTGTTCCATTGCACCGTC
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTT-AATATGTTCCACTGCATCGCC
*
37812178 TGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTC
65 TGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTC
* * * *
37812243 ACCGATGTGGCTTTAATCTGTTCCACCGCATCGCCTGGGGAATAAGATTCGTTGTTGTAGTTTTA
130 ACCGATGTGGCTTTAATATGTTCCACCGCATCGCCTGGGGAGTAAGATTCGCTGTTGTAGCTTTA
* *
37812308 ATCTTTTTAACCGCAATGTCGGGGAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCAT
195 ATCTTTTTAACTGCAATGTCGGGGAGCAAGATTCACCAATGTGGCTTTAATATGTTCCACTGCAT
* *
37812373 CACCTTGGGAGTAAGATTCACTGTTGTAGCTTTAATCTTT
260 CGCCTGGGGAGTAAGATTCACTGTTGTAGCTTTAATCTTT
* *
37812413 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATTTGTTCCACCGCATCGCCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
37812478 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGG-AGCAAGATTCA
66 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCA
* * * *
37812542 CCAATGTGGCTTTAATATGTTCCACTGCATCTCCTGGGGAGTAAGATTCGCTGTTGCAGCTTTAA
131 CCGATGTGGCTTTAATATGTTCCACCGCATCGCCTGGGGAGTAAGATTCGCTGTTGTAGCTTTAA
* **
37812607 TCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACCACAT
196 TCTTTTTAACTGCAATGTCGGGG-AGCAAGATTCACCAATGTGGCTTTAATATGTTCCACTGCAT
* * *
37812672 CGCCTGGGGAATAAGAATCGCTGTTGTAGCTTTAATCTTT
260 CGCCTGGGGAGTAAGATTCACTGTTGTAGCTTTAATCTTT
*
37812712 TTAACTGCAATGTCGGGG-AGCAAGATTCACCGATGTGGCTTTAATATGTTCCATTGCATCGCCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
* * *
37812776 TGGGAGTAAGGTTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCA
66 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCA
* *
37812841 CCGATGTGGCTTTAATTTGTTCCACAGCATCGCCTGGGGAGTAAGATTCGCTGTTGTAGCTTTAA
131 CCGATGTGGCTTTAATATGTTCCACCGCATCGCCTGGGGAGTAAGATTCGCTGTTGTAGCTTTAA
37812906 TCTTTTTAACTGCAATGTCGGGGAGCAAGATTCACCAATGTGGCTTTAATATGTTCCACTGCATC
196 TCTTTTTAACTGCAATGTCGGGGAGCAAGATTCACCAATGTGGCTTTAATATGTTCCACTGCATC
*
37812971 GCCTGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
261 GCCTGGGGAGTAAGATTCACTGTTGTAGCTTTAATCTTT
* * **
37813010 TTAACTGCGATGTCGGGGAAGCAAGATTCATCGATGTGGCTTTAATATGTTCCACCACATCGCCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
* *
37813075 GGGGAATAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCA
66 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCA
* * *
37813140 CCGATGTGGCTTTAATCTGTTCCACCGCATCACCTGGGGAGTAAGATTCGCTATTGTAGCTTTAA
131 CCGATGTGGCTTTAATATGTTCCACCGCATCGCCTGGGGAGTAAGATTCGCTGTTGTAGCTTTAA
**
37813205 TAATTTTAACTGCAATGTCGGGGAGCAAGATTCACCAATGTGGCTTTAATATGTTCCACTGCATC
196 TCTTTTTAACTGCAATGTCGGGGAGCAAGATTCACCAATGTGGCTTTAATATGTTCCACTGCATC
*
37813270 GCCTGGGGAGTAATATTCACTGTTGTAGCTTTAATCTTT
261 GCCTGGGGAGTAAGATTCACTGTTGTAGCTTTAATCTTT
* * *
37813309 TTAACTGCAATGTTGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCGACTGCATCGCCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
*
37813374 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATTCA
66 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCA
37813439 CCGATGTGGCTTTAATATGTTCCAC
131 CCGATGTGGCTTTAATATGTTCCAC
37813464 TGTATCACCA
Statistics
Matches: 977, Mismatches: 70, Indels: 8
0.93 0.07 0.01
Matches are distributed among these distances:
298 276 0.28
299 698 0.71
300 3 0.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (299 bp):
TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCA
CCGATGTGGCTTTAATATGTTCCACCGCATCGCCTGGGGAGTAAGATTCGCTGTTGTAGCTTTAA
TCTTTTTAACTGCAATGTCGGGGAGCAAGATTCACCAATGTGGCTTTAATATGTTCCACTGCATC
GCCTGGGGAGTAAGATTCACTGTTGTAGCTTTAATCTTT
Found at i:37813486 original size:100 final size:100
Alignment explanation
Indices: 37812114--37813465 Score: 2167
Period size: 100 Copynumber: 13.6 Consensus size: 100
37812104 TTTAATATGC
* ** * * * * * *
37812114 TTAACTGTAATGTCCAGGAAGCAAGATTCATCGTTGTGG-TTTCAATCTGTTCCATTGCACCGTC
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTT-AATATGTTCCACTGCATCGCC
*
37812178 TGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
65 TGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
* *
37812214 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACCGCATCGCCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
* * *
37812279 GGGGAATAAGATTCGTTGTTGTAGTTTTAATCTTT
66 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
* *
37812314 TTAACCGCAATGTCGGGG-AGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCACCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
* *
37812378 TGGGAGTAAGATTCACTGTTGTAGCTTTAATCTTT
66 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
* *
37812413 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATTTGTTCCACCGCATCGCCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
37812478 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
66 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
* *
37812513 TTAACTGCAATGTCGGGG-AGCAAGATTCACCAATGTGGCTTTAATATGTTCCACTGCATCTCCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
*
37812577 GGGGAGTAAGATTCGCTGTTGCAGCTTTAATCTTT
66 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
**
37812612 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACCACATCGCCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
* *
37812677 GGGGAATAAGAATCGCTGTTGTAGCTTTAATCTTT
66 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
*
37812712 TTAACTGCAATGTCGGGG-AGCAAGATTCACCGATGTGGCTTTAATATGTTCCATTGCATCGCCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
* * *
37812776 TGGGAGTAAGGTTCACTGTTGTAGCTTTAATCTTT
66 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
* *
37812811 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATTTGTTCCACAGCATCGCCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
37812876 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
66 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
*
37812911 TTAACTGCAATGTCGGGG-AGCAAGATTCACCAATGTGGCTTTAATATGTTCCACTGCATCGCCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
37812975 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
66 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
* * **
37813010 TTAACTGCGATGTCGGGGAAGCAAGATTCATCGATGTGGCTTTAATATGTTCCACCACATCGCCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
* *
37813075 GGGGAATAAGATTCACTGTTGTAGCTTTAATCTTT
66 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
* * *
37813110 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACCGCATCACCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
* **
37813175 GGGGAGTAAGATTCGCTATTGTAGCTTTAATAATT
66 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
*
37813210 TTAACTGCAATGTCGGGG-AGCAAGATTCACCAATGTGGCTTTAATATGTTCCACTGCATCGCCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
* *
37813274 GGGGAGTAATATTCACTGTTGTAGCTTTAATCTTT
66 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
* * *
37813309 TTAACTGCAATGTTGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCGACTGCATCGCCT
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
37813374 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
66 GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
*
37813409 TTAATTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTG
1 TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTG
37813466 TATCACCAGG
Statistics
Matches: 1153, Mismatches: 93, Indels: 12
0.92 0.07 0.01
Matches are distributed among these distances:
99 459 0.40
100 691 0.60
101 3 0.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (100 bp):
TTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATATGTTCCACTGCATCGCCT
GGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
Found at i:37815080 original size:7 final size:7
Alignment explanation
Indices: 37815066--37815103 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
37815056 AGCCTCTCCA
37815066 TCATTTT
1 TCATTTT
*
37815073 TTATTTT
1 TCATTTT
37815080 TCATTTT
1 TCATTTT
37815087 CTC-TTTT
1 -TCATTTT
37815094 TCATTTT
1 TCATTTT
37815101 TCA
1 TCA
37815104 CATTTTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 2 0.07
7 23 0.85
8 2 0.07
ACGTcount: A:0.13, C:0.16, G:0.00, T:0.71
Consensus pattern (7 bp):
TCATTTT
Found at i:37816149 original size:45 final size:45
Alignment explanation
Indices: 37816098--37816330 Score: 412
Period size: 45 Copynumber: 5.2 Consensus size: 45
37816088 TCGGCCATGG
* * * *
37816098 TGCTTCCTCAATTTGTTCCATAAATTATGCATGATGTTGGGCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
*
37816143 TGCTTCCTTAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
37816188 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
37816233 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
*
37816278 TGCTTCCTCAAATTCTCCCATGAATTATGCATGATGTTGGTCAAA
1 TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
37816323 TGCTTCCT
1 TGCTTCCT
37816331 TAATTTCATG
Statistics
Matches: 181, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 181 1.00
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (45 bp):
TGCTTCCTCAAATTCTTCCATGAATTATGCATGATGTTGGTCAAA
Found at i:37817255 original size:34 final size:34
Alignment explanation
Indices: 37817217--37817288 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 34
37817207 TTCAATTTCA
*
37817217 TTTTGACCTTGATTTTGA-TTTTTCTTTTTCTTCT
1 TTTTG-CCTTGATTTTAATTTTTTCTTTTTCTTCT
** * *
37817251 TTTTGTTTTGATTTTAATTTTTTCTTTTTGTTTT
1 TTTTGCCTTGATTTTAATTTTTTCTTTTTCTTCT
37817285 TTTT
1 TTTT
37817289 TTAAATTAGA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
33 9 0.28
34 23 0.72
ACGTcount: A:0.08, C:0.08, G:0.08, T:0.75
Consensus pattern (34 bp):
TTTTGCCTTGATTTTAATTTTTTCTTTTTCTTCT
Found at i:37817262 original size:33 final size:34
Alignment explanation
Indices: 37817225--37817288 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
37817215 CATTTTGACC
*
37817225 TTGATTTTGA-TTTTTCTTTTTCTTCTTTTTGTT
1 TTGATTTTAATTTTTTCTTTTTCTTCTTTTTGTT
* *
37817258 TTGATTTTAATTTTTTCTTTTTGTTTTTTTT
1 TTGATTTTAATTTTTTCTTTTTCTTCTTTTT
37817289 TTAAATTAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 9 0.33
34 18 0.67
ACGTcount: A:0.08, C:0.06, G:0.08, T:0.78
Consensus pattern (34 bp):
TTGATTTTAATTTTTTCTTTTTCTTCTTTTTGTT
Found at i:37817286 original size:27 final size:27
Alignment explanation
Indices: 37817229--37817284 Score: 80
Period size: 25 Copynumber: 2.1 Consensus size: 27
37817219 TTGACCTTGA
37817229 TTTTGATTTTTCTTTTTCTTCTTTTTG
1 TTTTGATTTTTCTTTTTCTTCTTTTTG
**
37817256 TTTTGA-TTTTAATTTT-TTCTTTTTG
1 TTTTGATTTTTCTTTTTCTTCTTTTTG
37817281 TTTT
1 TTTT
37817285 TTTTTTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 13 0.48
26 8 0.30
27 6 0.22
ACGTcount: A:0.07, C:0.07, G:0.07, T:0.79
Consensus pattern (27 bp):
TTTTGATTTTTCTTTTTCTTCTTTTTG
Found at i:37822081 original size:30 final size:29
Alignment explanation
Indices: 37822039--37822095 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
37822029 TTAGTTAGAC
37822039 ATGATAATACATA-TAAAAATATAAAAATA
1 ATGATAATACATACT-AAAATATAAAAATA
*
37822068 ATGATACATACATACTAATATATAAAAA
1 ATGATA-ATACATACTAAAATATAAAAA
37822096 AATAAGTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 6 0.24
30 18 0.72
31 1 0.04
ACGTcount: A:0.61, C:0.07, G:0.04, T:0.28
Consensus pattern (29 bp):
ATGATAATACATACTAAAATATAAAAATA
Found at i:37825113 original size:51 final size:51
Alignment explanation
Indices: 37825037--37825140 Score: 208
Period size: 51 Copynumber: 2.0 Consensus size: 51
37825027 ATTTTTCATG
37825037 ATAACATACAATCACTCAGATAAAATCATCATTCATGCTTGCATACAAGCT
1 ATAACATACAATCACTCAGATAAAATCATCATTCATGCTTGCATACAAGCT
37825088 ATAACATACAATCACTCAGATAAAATCATCATTCATGCTTGCATACAAGCT
1 ATAACATACAATCACTCAGATAAAATCATCATTCATGCTTGCATACAAGCT
37825139 AT
1 AT
37825141 CTTATTAAAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.28
Consensus pattern (51 bp):
ATAACATACAATCACTCAGATAAAATCATCATTCATGCTTGCATACAAGCT
Found at i:37827159 original size:10 final size:10
Alignment explanation
Indices: 37827144--37827193 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
37827134 ATTGGGTTAA
37827144 AATTGAGCTG
1 AATTGAGCTG
*
37827154 AATTGATCTCG
1 AATTGAGCT-G
37827165 AA-TGAGCTG
1 AATTGAGCTG
*
37827174 AATTGAGCTC
1 AATTGAGCTG
*
37827184 AAGTGAGCTG
1 AATTGAGCTG
37827194 GAAACGAGCT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
9 3 0.09
10 27 0.82
11 3 0.09
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (10 bp):
AATTGAGCTG
Found at i:37827170 original size:20 final size:20
Alignment explanation
Indices: 37827147--37827193 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
37827137 GGGTTAAAAT
*
37827147 TGAGCTGAATTGATCTCGAA-
1 TGAGCTGAATTGAGCTC-AAG
37827167 TGAGCTGAATTGAGCTCAAG
1 TGAGCTGAATTGAGCTCAAG
37827187 TGAGCTG
1 TGAGCTG
37827194 GAAACGAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 2 0.08
20 23 0.92
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCAAG
Found at i:37829143 original size:12 final size:12
Alignment explanation
Indices: 37829110--37829190 Score: 53
Period size: 12 Copynumber: 6.8 Consensus size: 12
37829100 TTTCCACTCG
37829110 ATTTC-TTTTCA
1 ATTTCTTTTTCA
** *
37829121 AGCTCTCTTTCA
1 ATTTCTTTTTCA
37829133 ATTTCTTTTTCCA
1 ATTTCTTTTT-CA
*
37829146 CTCTTTCTTTTTC-
1 --ATTTCTTTTTCA
*
37829159 --TTCTCTTTCA
1 ATTTCTTTTTCA
37829169 ATTTCTTTTTCA
1 ATTTCTTTTTCA
*
37829181 ATCTCTTTTT
1 ATTTCTTTTT
37829191 GCTTTTCACT
Statistics
Matches: 53, Mismatches: 10, Indels: 13
0.70 0.13 0.17
Matches are distributed among these distances:
9 8 0.15
11 3 0.06
12 30 0.57
13 2 0.04
14 1 0.02
15 9 0.17
ACGTcount: A:0.12, C:0.25, G:0.01, T:0.62
Consensus pattern (12 bp):
ATTTCTTTTTCA
Found at i:37829151 original size:21 final size:20
Alignment explanation
Indices: 37829125--37829180 Score: 59
Period size: 18 Copynumber: 3.0 Consensus size: 20
37829115 TTTTCAAGCT
37829125 CTCTTTCAATTTCTTTTTCCA
1 CTCTTTCAATTTCTTTTT-CA
*
37829146 CTCTTTC--TTT-TTCTT--
1 CTCTTTCAATTTCTTTTTCA
37829161 CTCTTTCAATTTCTTTTTCA
1 CTCTTTCAATTTCTTTTTCA
37829181 ATCTCTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 11
0.68 0.05 0.27
Matches are distributed among these distances:
15 7 0.25
17 3 0.11
18 8 0.29
19 3 0.11
21 7 0.25
ACGTcount: A:0.11, C:0.27, G:0.00, T:0.62
Consensus pattern (20 bp):
CTCTTTCAATTTCTTTTTCA
Found at i:37829243 original size:15 final size:15
Alignment explanation
Indices: 37829220--37829266 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
37829210 TTTTGAAATC
37829220 TCATTTTCATATT-TT
1 TCATTTTCAT-TTCTT
*
37829235 TCTTTTTCATTTCTT
1 TCATTTTCATTTCTT
37829250 TCATTTTCATTTTCTT
1 TCATTTTCA-TTTCTT
37829266 T
1 T
37829267 ATTCTTTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 2 0.07
15 19 0.68
16 7 0.25
ACGTcount: A:0.13, C:0.17, G:0.00, T:0.70
Consensus pattern (15 bp):
TCATTTTCATTTCTT
Found at i:37830348 original size:16 final size:15
Alignment explanation
Indices: 37830306--37830353 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
37830296 GCAAGACTTT
*
37830306 TCACTTCTTTTTTTT
1 TCACTTCTTTTTTTC
* *
37830321 TACTCTTTTTTTTTTGC
1 T-CACTTCTTTTTTT-C
37830338 TCACTTCTTTTTTTC
1 TCACTTCTTTTTTTC
37830353 T
1 T
37830354 TTTTTTTCGA
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
15 3 0.12
16 22 0.85
17 1 0.04
ACGTcount: A:0.06, C:0.21, G:0.02, T:0.71
Consensus pattern (15 bp):
TCACTTCTTTTTTTC
Found at i:37831910 original size:10 final size:10
Alignment explanation
Indices: 37831895--37831944 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
37831885 ATTGGGTTAA
37831895 AATTGAGCTG
1 AATTGAGCTG
*
37831905 AATTGATCTCG
1 AATTGAGCT-G
37831916 AA-TGAGCTG
1 AATTGAGCTG
*
37831925 AATTGAGCTC
1 AATTGAGCTG
*
37831935 AAGTGAGCTG
1 AATTGAGCTG
37831945 GAAACGAGCT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
9 3 0.09
10 27 0.82
11 3 0.09
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (10 bp):
AATTGAGCTG
Found at i:37831921 original size:20 final size:20
Alignment explanation
Indices: 37831898--37831944 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
37831888 GGGTTAAAAT
*
37831898 TGAGCTGAATTGATCTCGAA-
1 TGAGCTGAATTGAGCTC-AAG
37831918 TGAGCTGAATTGAGCTCAAG
1 TGAGCTGAATTGAGCTCAAG
37831938 TGAGCTG
1 TGAGCTG
37831945 GAAACGAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 2 0.08
20 23 0.92
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCAAG
Found at i:37833324 original size:20 final size:20
Alignment explanation
Indices: 37833299--37833337 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
37833289 TAATTTCTTC
37833299 TTTACTTACTCT-CTTACTTT
1 TTTACTTACT-TGCTTACTTT
37833319 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
37833338 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.03, T:0.59
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTT
Found at i:37833665 original size:50 final size:50
Alignment explanation
Indices: 37833603--37833719 Score: 126
Period size: 50 Copynumber: 2.3 Consensus size: 50
37833593 ATATGTCATA
* * ** * * **
37833603 TCCCAGATATGGTCTTAAATGAGAGTTCTCATATCGGTGCCCATGCCATG
1 TCCCAGACATGGTCTTAAAGGAGACCTCTCATATCGGTACCAACACCATG
** * *
37833653 TCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTACCAACACCATG
1 TCCCAGACATGGTCTTAAAGGAGACCTCTCATATCGGTACCAACACCATG
37833703 TCCCAGACATGGTCTTA
1 TCCCAGACATGGTCTTA
37833720 CATGGGGTCT
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.26
Consensus pattern (50 bp):
TCCCAGACATGGTCTTAAAGGAGACCTCTCATATCGGTACCAACACCATG
Found at i:37835993 original size:26 final size:26
Alignment explanation
Indices: 37835946--37836025 Score: 79
Period size: 26 Copynumber: 3.1 Consensus size: 26
37835936 GCCAACACAC
* * *
37835946 CAATATCGCAGTAGAGCTACTAGTAA
1 CAATAACGCAGCAAAGCTACTAGTAA
* * *
37835972 TAATGACGTAGCAAAGCTACTAGTAA
1 CAATAACGCAGCAAAGCTACTAGTAA
* * *
37835998 CAATAACGCAGCAAGGCTGCCAGTAA
1 CAATAACGCAGCAAAGCTACTAGTAA
37836024 CA
1 CA
37836026 GTATATGTGG
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.40, C:0.21, G:0.20, T:0.19
Consensus pattern (26 bp):
CAATAACGCAGCAAAGCTACTAGTAA
Found at i:37836278 original size:54 final size:53
Alignment explanation
Indices: 37836206--37836480 Score: 308
Period size: 54 Copynumber: 5.1 Consensus size: 53
37836196 TATAACAGTT
37836206 ATTTTACCCTTC-AGGGGTATTTTTGTAATTTTACACTTTGAGGGTATTTCGATA
1 ATTTTACCCTTCGA-GGGTATTTTTGTAATTTTAC-CTTTGAGGGTATTTCGATA
* * * *
37836260 ATTTTACCCTTCGAGGGTATTTTGGTAATTTTACCTTTTAGGGGTGTTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTTTGTAATTTTACCTTTGA-GGGTATTTCGATA
* * *
37836314 ATTTTA-CCTTTGAGGGTATTTTAGTAATTTTACCCTTTGAAGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTTTGTAATTTTA-CCTTTGAGGGTATTTCGATA
* *
37836367 ATTTTACCCTTCGAGGGTA-TTTTGATAATTTTACCCTTCAGGGGTATTTC-AGTA
1 ATTTTACCCTTCGAGGGTATTTTTG-TAATTTTACCTTTGA-GGGTATTTCGA-TA
* * * * *
37836421 ATTTTACCTTTCGAGTGTA-TTTCGCTAATTTTACCCTTCGAGGGTATTTCGACA
1 ATTTTACCCTTCGAGGGTATTTTTG-TAATTTTA-CCTTTGAGGGTATTTCGATA
37836475 ATTTTA
1 ATTTTA
37836481 GCCATCAAGT
Statistics
Matches: 189, Mismatches: 23, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
53 55 0.29
54 128 0.68
55 6 0.03
ACGTcount: A:0.21, C:0.15, G:0.19, T:0.45
Consensus pattern (53 bp):
ATTTTACCCTTCGAGGGTATTTTTGTAATTTTACCTTTGAGGGTATTTCGATA
Found at i:37836470 original size:27 final size:26
Alignment explanation
Indices: 37836206--37836480 Score: 270
Period size: 27 Copynumber: 10.2 Consensus size: 26
37836196 TATAACAGTT
*
37836206 ATTTTACCCTTC-AGGGGTATTTTTGTA
1 ATTTTACCCTTCGA-GGGTA-TTTCGTA
* *
37836233 ATTTTACACTTTGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCG-TA
*
37836260 ATTTTACCCTTCGAGGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTA-TTTCGTA
** *
37836287 ATTTTA-CCTTTTAGGGGTGTTTCGGTA
1 ATTTTACCCTTCGA-GGGTATTTC-GTA
* *
37836314 ATTTTA-CCTTTGAGGGTATTTTAGTA
1 ATTTTACCCTTCGAGGGTA-TTTCGTA
* *
37836340 ATTTTACCCTTTGAAGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCG-TA
*
37836367 ATTTTACCCTTCGAGGGTATTTTGATA
1 ATTTTACCCTTCGAGGGTATTTCG-TA
37836394 ATTTTACCCTTC-AGGGGTATTTCAGTA
1 ATTTTACCCTTCGA-GGGTATTTC-GTA
* *
37836421 ATTTTACCTTTCGAGTGTATTTCGCTA
1 ATTTTACCCTTCGAGGGTATTTCG-TA
*
37836448 ATTTTACCCTTCGAGGGTATTTCGACA
1 ATTTTACCCTTCGAGGGTATTTCG-TA
37836475 ATTTTA
1 ATTTTA
37836481 GCCATCAAGT
Statistics
Matches: 211, Mismatches: 25, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
26 31 0.15
27 173 0.82
28 7 0.03
ACGTcount: A:0.21, C:0.15, G:0.19, T:0.45
Consensus pattern (26 bp):
ATTTTACCCTTCGAGGGTATTTCGTA
Found at i:37851706 original size:27 final size:27
Alignment explanation
Indices: 37851676--37851762 Score: 97
Period size: 27 Copynumber: 3.1 Consensus size: 27
37851666 TCAAGCTCTC
*
37851676 TTTCAATTTCTTTT-TTCGCTTTTTCTT
1 TTTCAATTTCTTTTCTTC-CATTTTCTT
* *
37851703 TTTCAATTTTTTTTCATTCTCAATTTCTT
1 TTTCAATTTCTTTTC-TTC-CATTTTCTT
37851732 TTTCAATTTTCTTTTCTT-CATTTTCTT
1 TTTCAA-TTTCTTTTCTTCCATTTTCTT
37851759 TTTC
1 TTTC
37851763 TCTCACTTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
27 25 0.49
29 18 0.35
30 8 0.16
ACGTcount: A:0.11, C:0.18, G:0.01, T:0.69
Consensus pattern (27 bp):
TTTCAATTTCTTTTCTTCCATTTTCTT
Found at i:37851738 original size:29 final size:27
Alignment explanation
Indices: 37851697--37851762 Score: 89
Period size: 29 Copynumber: 2.4 Consensus size: 27
37851687 TTTTTCGCTT
37851697 TTTCTTTTTCAATTTT-TTTTCATTCTCAA
1 TTTCTTTTTCAATTTTCTTTTC--T-TCAA
*
37851726 TTTCTTTTTCAATTTTCTTTTCTTCAT
1 TTTCTTTTTCAATTTTCTTTTCTTCAA
37851753 TTTCTTTTTC
1 TTTCTTTTTC
37851763 TCTCACTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
27 13 0.37
28 1 0.03
29 16 0.46
30 5 0.14
ACGTcount: A:0.12, C:0.18, G:0.00, T:0.70
Consensus pattern (27 bp):
TTTCTTTTTCAATTTTCTTTTCTTCAA
Found at i:37851746 original size:12 final size:12
Alignment explanation
Indices: 37851697--37851852 Score: 55
Period size: 12 Copynumber: 13.6 Consensus size: 12
37851687 TTTTTCGCTT
37851697 TTTCTTTTTCAA
1 TTTCTTTTTCAA
37851709 TTT-TTTTTC-A
1 TTTCTTTTTCAA
37851719 -TTC----TCAA
1 TTTCTTTTTCAA
37851726 TTTCTTTTTCAA
1 TTTCTTTTTCAA
*
37851738 TTTTCTTTTCTTCAT
1 -TTTC-TTT-TTCAA
**
37851753 TTTCTTTTTCTC
1 TTTCTTTTTCAA
** *
37851765 TCACTTTTTCGA
1 TTTCTTTTTCAA
*
37851777 TTTCTTTTTC-T
1 TTTCTTTTTCAA
** **
37851788 TTTGCAATTTCTT
1 TTT-CTTTTTCAA
**
37851801 TTTCTTTTTCGT
1 TTTCTTTTTCAA
*
37851813 TTTCTTTTT--G
1 TTTCTTTTTCAA
*
37851823 TTT-TCTTTCAA
1 TTTCTTTTTCAA
37851834 TTTCTTTTTCAA
1 TTTCTTTTTCAA
*
37851846 TCTCTTT
1 TTTCTTT
37851853 CTCCTTTTCT
Statistics
Matches: 109, Mismatches: 20, Indels: 30
0.69 0.13 0.19
Matches are distributed among these distances:
6 2 0.02
7 1 0.01
8 3 0.03
9 6 0.06
10 4 0.04
11 12 0.11
12 59 0.54
13 11 0.10
14 7 0.06
15 4 0.04
ACGTcount: A:0.10, C:0.19, G:0.03, T:0.69
Consensus pattern (12 bp):
TTTCTTTTTCAA
Found at i:37851821 original size:18 final size:18
Alignment explanation
Indices: 37851694--37851826 Score: 81
Period size: 18 Copynumber: 7.3 Consensus size: 18
37851684 TCTTTTTTCG
* **
37851694 CTTTTTCTTTTTCAATTT
1 CTTTTTCATTTTCTTTTT
* **
37851712 -TTTTTCATTCTCAATTT
1 CTTTTTCATTTTCTTTTT
37851729 CTTTTTCAATTTTCTTTTCTT
1 CTTTTTC-ATTTTC-TTT-TT
* * * **
37851750 CATTTTCTTTTTCTCTCA
1 CTTTTTCATTTTCTTTTT
37851768 CTTTTTCGA-TTTCTTTTT
1 CTTTTTC-ATTTTCTTTTT
* *
37851786 CTTTTGCAATTTCTTTTT
1 CTTTTTCATTTTCTTTTT
*
37851804 CTTTTTCGTTTTCTTTTT
1 CTTTTTCATTTTCTTTTT
*
37851822 GTTTT
1 CTTTT
37851827 CTTTCAATTT
Statistics
Matches: 89, Mismatches: 20, Indels: 12
0.74 0.17 0.10
Matches are distributed among these distances:
17 16 0.18
18 52 0.58
19 7 0.08
20 6 0.07
21 8 0.09
ACGTcount: A:0.09, C:0.18, G:0.03, T:0.70
Consensus pattern (18 bp):
CTTTTTCATTTTCTTTTT
Found at i:37851843 original size:6 final size:6
Alignment explanation
Indices: 37851694--37851830 Score: 71
Period size: 6 Copynumber: 22.7 Consensus size: 6
37851684 TCTTTTTTCG
** * * ** *
37851694 CTTTTT CTTTTT CAATTT -TTTTT CATTCT CAATTT CTTTTT CAATTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT C-TTTTT
* * ** ** *
37851742 CTTTTCTT CATTTT CTTTTT CTCTCA CTTTTT CGATTT CTTTTT CTTTTG
1 C-TTT-TT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT
** * *
37851792 CAATTT CTTTTT CTTTTT CGTTTT CTTTTT -GTTTT CTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTT
37851831 CAATTTCTTT
Statistics
Matches: 92, Mismatches: 35, Indels: 8
0.68 0.26 0.06
Matches are distributed among these distances:
5 7 0.08
6 73 0.79
7 9 0.10
8 3 0.03
ACGTcount: A:0.09, C:0.18, G:0.03, T:0.70
Consensus pattern (6 bp):
CTTTTT
Found at i:37852921 original size:20 final size:21
Alignment explanation
Indices: 37852896--37852953 Score: 64
Period size: 20 Copynumber: 2.8 Consensus size: 21
37852886 TTGTCACTTC
37852896 TTTTTTTCCTTTTTTTT-CGA
1 TTTTTTTCCTTTTTTTTCCGA
**
37852916 TTTTTTTAATTTTTTTTCCGA
1 TTTTTTTCCTTTTTTTTCCGA
* *
37852937 ATTTCTTCTCTTTTTTT
1 TTTTTTTC-CTTTTTTT
37852954 AAAAAATCTA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
20 15 0.50
21 8 0.27
22 7 0.23
ACGTcount: A:0.09, C:0.14, G:0.03, T:0.74
Consensus pattern (21 bp):
TTTTTTTCCTTTTTTTTCCGA
Found at i:37860754 original size:72 final size:73
Alignment explanation
Indices: 37860610--37860757 Score: 185
Period size: 72 Copynumber: 2.0 Consensus size: 73
37860600 GCAGGTACAT
37860610 GGACGGCATTTAAAGAAAAGGTGGCTGCTGCATTTTTCCAAAGCTGCCGAATTTAATGAGTGCAT
1 GGACGGCATTTAAAGAAAAGGTGGCTGCTGCATTTTTCCAAAGCTGCCGAATTTAATGAGTGCAT
*
37860675 GGGACTTG
66 GGAACTTG
* * * * * * *
37860683 GGACGGCATTTAAAGATAAA-GTTGCTGTTGTA-TTTTCCCAA-CTAGCCGAGTTTAGTGTGTGC
1 GGACGGCATTTAAAGA-AAAGGTGGCTGCTGCATTTTTCCAAAGCT-GCCGAATTTAATGAGTGC
37860745 ATGGAACTTG
64 ATGGAACTTG
37860755 GGA
1 GGA
37860758 TAGCATTAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
71 2 0.03
72 35 0.54
73 25 0.38
74 3 0.05
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (73 bp):
GGACGGCATTTAAAGAAAAGGTGGCTGCTGCATTTTTCCAAAGCTGCCGAATTTAATGAGTGCAT
GGAACTTG
Found at i:37860764 original size:72 final size:73
Alignment explanation
Indices: 37860610--37860780 Score: 172
Period size: 72 Copynumber: 2.4 Consensus size: 73
37860600 GCAGGTACAT
*
37860610 GGACGGCATTTAAAGAAAAGGTGGCTGCTGCATTTTTCCAAAGCTGCCGAATTTAATGAGTGCAT
1 GGACAGCATTTAAAGAAAAGGTGGCTGCTGCATTTTTCCAAAGCTGCCGAATTTAATGAGTGCAT
*
37860675 GGGACTTG
66 GGAACTTG
* * * * * * * *
37860683 GGACGGCATTTAAAGATAAA-GTTGCTGTTGTA-TTTTCCCAA-CTAGCCGAGTTTAGTGTGTGC
1 GGACAGCATTTAAAGA-AAAGGTGGCTGCTGCATTTTTCCAAAGCT-GCCGAATTTAATGAGTGC
37860745 ATGGAACTTG
64 ATGGAACTTG
* * *
37860755 GGATAGCA-TTAAA-AAGAGGAGGCTGC
1 GGACAGCATTTAAAGAAAAGGTGGCTGC
37860781 CGTTGCAATC
Statistics
Matches: 81, Mismatches: 14, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
69 2 0.02
70 6 0.07
71 7 0.09
72 38 0.47
73 25 0.31
74 3 0.04
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (73 bp):
GGACAGCATTTAAAGAAAAGGTGGCTGCTGCATTTTTCCAAAGCTGCCGAATTTAATGAGTGCAT
GGAACTTG
Found at i:37865108 original size:69 final size:69
Alignment explanation
Indices: 37864997--37865139 Score: 277
Period size: 69 Copynumber: 2.1 Consensus size: 69
37864987 TTGCAATTTT
37864997 CTAAGCTGATTATTCAGCTCACCAACGCATTTTTAAAGCTCCACCAGCCGAAATTGTTCCTTTCA
1 CTAAGCTGATTATTCAGCTCACCAACGCATTTTTAAAGCTCCACCAGCCGAAATTGTTCCTTTCA
37865062 CACC
66 CACC
*
37865066 CTAAGCTGATTATTCAGCTCACCAACGCATTTTTAAAGCTCCACCAGCTGAAATTGTTCCTTTCA
1 CTAAGCTGATTATTCAGCTCACCAACGCATTTTTAAAGCTCCACCAGCCGAAATTGTTCCTTTCA
37865131 CACC
66 CACC
37865135 CTAAG
1 CTAAG
37865140 TCCTTTCATT
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 73 1.00
ACGTcount: A:0.28, C:0.31, G:0.12, T:0.29
Consensus pattern (69 bp):
CTAAGCTGATTATTCAGCTCACCAACGCATTTTTAAAGCTCCACCAGCCGAAATTGTTCCTTTCA
CACC
Found at i:37873799 original size:368 final size:368
Alignment explanation
Indices: 37873115--37873850 Score: 1364
Period size: 368 Copynumber: 2.0 Consensus size: 368
37873105 ACACATAAAA
*
37873115 GTGCTGAGTACGTTAGTTAAGCCGAATGGCATAACCAACCACTCGTACAAACCGTGCTTTGTCTT
1 GTGCTGAGTACGTTACTTAAGCCGAATGGCATAACCAACCACTCGTACAAACCGTGCTTTGTCTT
* * *
37873180 AAACGCCATTTTCCACTCATCTGGTTCTCGCATTCGGATTTGCTGATATCCACTCTTGAGATCTA
66 AAACGCCATTTTCCACTCATCTGCTTCTCACATTCAGATTTGCTGATATCCACTCTTGAGATCTA
37873245 TTTTGGAGAAAAGTTAGGCTCCGTTTAGTTCATCAAACATGTCATCAAGGCGTGGAATTGGGTGC
131 TTTTGGAGAAAAGTTAGGCTCCGTTTAGTTCATCAAACATGTCATCAAGGCGTGGAATTGGGTGC
*
37873310 CTATACTTGATTATGATCTTGTTAATTGTTTGGTAGTCCACAAATATATGTCAAGTTCCATCCTT
196 CTATACTTGATTATGATCTTGTTAATTGTTTGGTAGTCCACAAATATATGCCAAGTTCCATCCTT
* *
37873375 TTGAGCACGAAGAGCACGGGCACGACTCAAGGACTTAAGCTCTCTCGAATGTACCCCTTTTCCAT
261 TTGAGCACGAAGAGCACAGGCACGACGCAAGGACTTAAGCTCTCTCGAATGTACCCCTTTTCCAT
37873440 CAACTTAGCTACTTGCCTTTCAAGTTCCTTAGTTTCTTTAGGG
326 CAACTTAGCTACTTGCCTTTCAAGTTCCTTAGTTTCTTTAGGG
*
37873483 GTGCTGGGTACGTTACTTAAGCCGAATGGCATAACCAACCACTCGTACAAACCGTGCTTTGTCTT
1 GTGCTGAGTACGTTACTTAAGCCGAATGGCATAACCAACCACTCGTACAAACCGTGCTTTGTCTT
*
37873548 AAACGCCGTTTTCCACTCATCTGCTTCTCACATTCAGATTTGCTGATATCCACTCTTGAGATCTA
66 AAACGCCATTTTCCACTCATCTGCTTCTCACATTCAGATTTGCTGATATCCACTCTTGAGATCTA
*
37873613 TTTTGGAGAAAAGTTAGGCTCTGTTTAGTTCATCAAACATGTCATCAAGGCGTGGAATTGGGTGC
131 TTTTGGAGAAAAGTTAGGCTCCGTTTAGTTCATCAAACATGTCATCAAGGCGTGGAATTGGGTGC
37873678 CTATACTTGATTATGATCTTGTTAATTGTTTGGTAGTCCACAAATATATGCCAAGTTCCATCCTT
196 CTATACTTGATTATGATCTTGTTAATTGTTTGGTAGTCCACAAATATATGCCAAGTTCCATCCTT
*
37873743 TTGAGCACGAAGAGCACAGGCACGACGCGAGGACTTAAGCTCTCTCGAATGTACCCCTTTTCCAT
261 TTGAGCACGAAGAGCACAGGCACGACGCAAGGACTTAAGCTCTCTCGAATGTACCCCTTTTCCAT
*
37873808 CAACTTAGCTACTTGCCTTTGAAGTTCCTTAGTTTCTTTAGGG
326 CAACTTAGCTACTTGCCTTTCAAGTTCCTTAGTTTCTTTAGGG
37873851 TTACTTCGAT
Statistics
Matches: 356, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
368 356 1.00
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (368 bp):
GTGCTGAGTACGTTACTTAAGCCGAATGGCATAACCAACCACTCGTACAAACCGTGCTTTGTCTT
AAACGCCATTTTCCACTCATCTGCTTCTCACATTCAGATTTGCTGATATCCACTCTTGAGATCTA
TTTTGGAGAAAAGTTAGGCTCCGTTTAGTTCATCAAACATGTCATCAAGGCGTGGAATTGGGTGC
CTATACTTGATTATGATCTTGTTAATTGTTTGGTAGTCCACAAATATATGCCAAGTTCCATCCTT
TTGAGCACGAAGAGCACAGGCACGACGCAAGGACTTAAGCTCTCTCGAATGTACCCCTTTTCCAT
CAACTTAGCTACTTGCCTTTCAAGTTCCTTAGTTTCTTTAGGG
Found at i:37878754 original size:22 final size:22
Alignment explanation
Indices: 37878689--37878755 Score: 107
Period size: 22 Copynumber: 3.0 Consensus size: 22
37878679 TTTATTGTTC
*
37878689 AAACATGAGAGCTTAGTACGTG
1 AAACATGAGAGCTTAGTACGTT
37878711 AAACATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
**
37878733 AGCCATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
37878755 A
1 A
37878756 TTTGATATGG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.25
Consensus pattern (22 bp):
AAACATGAGAGCTTAGTACGTT
Done.