Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62769430
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1067035 characters in sequence are not A, C, G, or T
File 128 of 206
Found at i:38654663 original size:12 final size:12
Alignment explanation
Indices: 38654630--38654664 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
38654620 TGAGACAAGA
38654630 TATTCTTTAAAT
1 TATTCTTTAAAT
*
38654642 TACTCTTTTAAAT
1 TATTC-TTTAAAT
38654655 TATTCTTTAA
1 TATTCTTTAA
38654665 GTAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.31, C:0.11, G:0.00, T:0.57
Consensus pattern (12 bp):
TATTCTTTAAAT
Found at i:38654860 original size:21 final size:21
Alignment explanation
Indices: 38654761--38654867 Score: 73
Period size: 21 Copynumber: 5.2 Consensus size: 21
38654751 TAAAGTAGGC
*
38654761 TATATATTATTTTTG-TAATAT
1 TATATATTATTATTGTTAA-AT
* *
38654782 TATATATTATTTTTATT-AAT
1 TATATATTATTATTGTTAAAT
* * *
38654802 TCATATTTTAATAATTGTTATAT
1 T-ATATATT-ATTATTGTTAAAT
* *
38654825 TA-AGA--A-TATTATTAAAT
1 TATATATTATTATTGTTAAAT
38654842 TATATATTATTATTGTTAAAT
1 TATATATTATTATTGTTAAAT
38654863 TATAT
1 TATAT
38654868 TTAATAATAA
Statistics
Matches: 65, Mismatches: 13, Indels: 16
0.69 0.14 0.17
Matches are distributed among these distances:
17 10 0.15
18 3 0.05
20 4 0.06
21 37 0.57
22 8 0.12
23 3 0.05
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.57
Consensus pattern (21 bp):
TATATATTATTATTGTTAAAT
Found at i:38654900 original size:58 final size:60
Alignment explanation
Indices: 38654780--38654932 Score: 185
Period size: 55 Copynumber: 2.6 Consensus size: 60
38654770 TTTTTGTAAT
** *
38654780 ATTATATATTATTTTTATT-AATTCATATTTTAATAAT-TGTTATATTAAGAATATTATTAA
1 ATTATATATTATTTTTATTAAATT-ATA-TTTAATAATAAATTATATTAAGAATATGATTAA
* *
38654840 ATTATATATTATTATTGTTAAATTATATTTAATAATAAATT-TATTAA-AATATGATTAA
1 ATTATATATTATTTTTATTAAATTATATTTAATAATAAATTATATTAAGAATATGATTAA
*
38654898 A-T-TAT-TTATTTTTATTAAATTATATTTGATAATAA
1 ATTATATATTATTTTTATTAAATTATATTTAATAATAA
38654933 TCCTATTAAA
Statistics
Matches: 83, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
55 27 0.33
56 3 0.04
57 1 0.01
58 11 0.13
59 15 0.18
60 22 0.27
61 4 0.05
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (60 bp):
ATTATATATTATTTTTATTAAATTATATTTAATAATAAATTATATTAAGAATATGATTAA
Found at i:38664566 original size:50 final size:49
Alignment explanation
Indices: 38664512--38664634 Score: 133
Period size: 49 Copynumber: 2.5 Consensus size: 49
38664502 GAGGTCCCCC
* * * *
38664512 GTAAGACCATGTCTGGGACATGGCATGGGCA-TCGATATGAGTAC-TCTCAT
1 GTAAGACCATGTCTGGGACATGGCATGGGCAGT--ACAGGA-AACATCCCAT
* * **
38664562 GTAAGACCATATCTGGGATATGGCATTTGCAGTACAGGAAACATCCCAT
1 GTAAGACCATGTCTGGGACATGGCATGGGCAGTACAGGAAACATCCCAT
38664611 GTAAGACCATGTCTGGGACATGGC
1 GTAAGACCATGTCTGGGACATGGC
38664635 TTTGGCATGT
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
48 2 0.03
49 31 0.51
50 27 0.44
51 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (49 bp):
GTAAGACCATGTCTGGGACATGGCATGGGCAGTACAGGAAACATCCCAT
Found at i:38666889 original size:27 final size:27
Alignment explanation
Indices: 38666857--38666913 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
38666847 ACTCAGCAAG
*
38666857 TATGCTCGAGAGTGTGTCTACAGAGGC
1 TATGCTCGAGAGTGTGTCTACAAAGGC
*
38666884 TATGCTTGAGAGTGTGTCTACAAAGGC
1 TATGCTCGAGAGTGTGTCTACAAAGGC
38666911 TAT
1 TAT
38666914 CATGTGCAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.30
Consensus pattern (27 bp):
TATGCTCGAGAGTGTGTCTACAAAGGC
Found at i:38673700 original size:56 final size:54
Alignment explanation
Indices: 38673622--38673780 Score: 161
Period size: 50 Copynumber: 3.0 Consensus size: 54
38673612 CATGACATTA
* **
38673622 AGGTTGATGAGA--TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTG
1 AGGTT-ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA--ACCG
* * *
38673677 AGGTTATGAGAGGTCCCACGTAAGACCATCTCAGGGACATGGCGTTGGC-ACCG
1 AGGTTATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCAACCG
* * *
38673730 A-G--ATGAGAGGTCCCCCGTAAGACCATGACTGGGACATGGCATGGGC-ACCG
1 AGGTTATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCAACCG
38673780 A
1 A
38673781 TATAAGAACT
Statistics
Matches: 90, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
50 43 0.48
52 1 0.01
53 3 0.03
54 6 0.07
55 5 0.06
56 32 0.36
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.21
Consensus pattern (54 bp):
AGGTTATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCAACCG
Found at i:38695478 original size:26 final size:27
Alignment explanation
Indices: 38695438--38695508 Score: 76
Period size: 26 Copynumber: 2.7 Consensus size: 27
38695428 TAAATATAAT
*
38695438 ATTAAT-TATTATTTAATATTA-AAAA
1 ATTAATATATTTTTTAATATTATAAAA
* *
38695463 ATTAATATATTTTTTAGTATTATATAA
1 ATTAATATATTTTTTAATATTATAAAA
* *
38695490 TTTAA-ATAATTTTTAATAT
1 ATTAATATATTTTTTAATAT
38695509 GAATATAATT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
25 6 0.16
26 25 0.66
27 7 0.18
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (27 bp):
ATTAATATATTTTTTAATATTATAAAA
Found at i:38695502 original size:27 final size:26
Alignment explanation
Indices: 38695431--38695546 Score: 92
Period size: 27 Copynumber: 4.3 Consensus size: 26
38695421 TTTATTATAA
*
38695431 ATATAATATT-AATTATTATTTAATATT
1 ATATAAT-TTAAATAATT-TTTAATATT
* * * *
38695458 A-AAAAATTAATATATTTTTTAGTATT
1 ATATAATTTAA-ATAATTTTTAATATT
*
38695484 ATATAATTTAAATAATTTTTAATATGA
1 ATATAATTTAAATAATTTTTAATAT-T
* *
38695511 ATATAATTTTAATAACTTTTAACTATT
1 ATATAATTTAAATAATTTTTAA-TATT
*
38695538 ATTTAATTT
1 ATATAATTT
38695547 TATTATTTAA
Statistics
Matches: 70, Mismatches: 14, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
25 2 0.03
26 25 0.36
27 40 0.57
28 3 0.04
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATAATTTAAATAATTTTTAATATT
Found at i:38702471 original size:18 final size:17
Alignment explanation
Indices: 38702426--38702531 Score: 90
Period size: 17 Copynumber: 6.2 Consensus size: 17
38702416 CAAGCTTCCA
*
38702426 TTTTAGAAAACTTCCAT
1 TTTTAGAAAACTTTCAT
**
38702443 TCCTA-AAAACTTTCTAT
1 TTTTAGAAAACTTTC-AT
* *
38702460 TTTTTGAAAACTTATTAT
1 TTTTAGAAAACTT-TCAT
* **
38702478 TTTTAGTAATTTTTCAT
1 TTTTAGAAAACTTTCAT
* *
38702495 TTTT-GGAAACTTTAAT
1 TTTTAGAAAACTTTCAT
38702511 TTTTAGAAAACTTTCAT
1 TTTTAGAAAACTTTCAT
38702528 TTTT
1 TTTT
38702532 CGTCATTTTC
Statistics
Matches: 67, Mismatches: 18, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
16 20 0.30
17 28 0.42
18 18 0.27
19 1 0.01
ACGTcount: A:0.31, C:0.11, G:0.06, T:0.52
Consensus pattern (17 bp):
TTTTAGAAAACTTTCAT
Found at i:38706555 original size:15 final size:15
Alignment explanation
Indices: 38706535--38706563 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
38706525 AATAAAACTT
38706535 TGGTTTAATGATAAA
1 TGGTTTAATGATAAA
38706550 TGGTTTAATGATAA
1 TGGTTTAATGATAA
38706564 TTTTTTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.41
Consensus pattern (15 bp):
TGGTTTAATGATAAA
Found at i:38711478 original size:16 final size:16
Alignment explanation
Indices: 38711448--38711489 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
38711438 AATGTCAAGC
*
38711448 TCAATCATAG-TCAAA
1 TCAATCATAGAGCAAA
38711463 -CATATCATAGAGCAAA
1 TCA-ATCATAGAGCAAA
38711479 TCAATCATAGA
1 TCAATCATAGA
38711490 TAACATAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 2 0.09
15 7 0.30
16 12 0.52
17 2 0.09
ACGTcount: A:0.48, C:0.19, G:0.10, T:0.24
Consensus pattern (16 bp):
TCAATCATAGAGCAAA
Found at i:38711565 original size:27 final size:26
Alignment explanation
Indices: 38711535--38712014 Score: 452
Period size: 27 Copynumber: 18.1 Consensus size: 26
38711525 GGGTATAACA
38711535 GTCATTTTACCCTATGGGGATATTTCG
1 GTCATTTTACCCTATGGGG-TATTTCG
* *
38711562 GTCATTTTACCCTGTGGGGGTATTTCA
1 GTCATTTTACCCTAT-GGGGTATTTCG
* *
38711589 GTCATTCTACCTTATGGGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTCG
* *
38711616 ATCATTTTA-CTTATAGGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTCG
* * * *
38711642 ATCAATTTACCTTATAAGGGGTATTTTG
1 GTCATTTTACCCTAT--GGGGTATTTCG
*
38711670 GTCATTTTACCCTATGCGGGTATTTTG
1 GTCATTTTACCCTATG-GGGTATTTCG
* *
38711697 GTCATTTTATCCTACGGGGGTA-----
1 GTCATTTTACCCTA-TGGGGTATTTCG
* * *
38711719 -TCATTATACCCTATGGGGGATGTCG
1 GTCATTTTACCCTATGGGGTATTTCG
38711744 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTCG
* * * *
38711771 GTCGTTTTATCTTATGAGGGTATTTCA
1 GTCATTTTACCCTATG-GGGTATTTCG
* *
38711798 GTCATTCTACCCGATGGGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTCG
* *
38711825 ATCATTTTACCCTATGGAGGTCTTTCG
1 GTCATTTTACCCTATGG-GGTATTTCG
*
38711852 GTCATTTTACCTTATAGGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTCG
* * *
38711879 ATCATTTTACGCTATGAGGGTATTTTG
1 GTCATTTTACCCTATG-GGGTATTTCG
*
38711906 GTCATTTTACCCTATGAGGTATTTCG
1 GTCATTTTACCCTATGGGGTATTTCG
* *
38711932 GTCATTTTACCTTATGAGGGTATTTTG
1 GTCATTTTACCCTATG-GGGTATTTCG
* * *
38711959 GTCATTTTACCTTTTGGGGGTATTTCA
1 GTCATTTTACCCTAT-GGGGTATTTCG
38711986 GTCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATG-GGGTATTTCG
38712013 GT
1 GT
38712015 GCAATCAATC
Statistics
Matches: 376, Mismatches: 57, Indels: 40
0.79 0.12 0.08
Matches are distributed among these distances:
20 5 0.01
21 11 0.03
26 66 0.18
27 262 0.70
28 32 0.09
ACGTcount: A:0.18, C:0.16, G:0.23, T:0.42
Consensus pattern (26 bp):
GTCATTTTACCCTATGGGGTATTTCG
Found at i:38711591 original size:54 final size:54
Alignment explanation
Indices: 38711535--38712014 Score: 501
Period size: 54 Copynumber: 9.0 Consensus size: 54
38711525 GGGTATAACA
* * *
38711535 GTCATTTTACCCTATGGGGATATTTCGGTCATTTTACCCTGTGGGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCG
* * * * *
38711589 GTCATTCTACCTTATGGGGGTATTTCGATCATTTTA-CTTATAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCG
* * * * * * *
38711642 ATCAATTTACCTTATAAGGGGTATTTTGGTCATTTTACCCTATGCGGGTATTTTG
1 GTCATTTTACCCTAT-GGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCG
* * * *
38711697 GTCATTTTATCCTACGGGGGTA------TCATTATACCCTATGGGGG-ATGTCG
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCG
* * * * *
38711744 GTCATTTTACCCTATGGGGGTATTTCGGTCGTTTTATCTTATGAGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCG
* * * * *
38711798 GTCATTCTACCCGATGGGGGTATTTCGATCATTTTACCCTATGGAGGTCTTTCG
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCG
* * * * * *
38711852 GTCATTTTACCTTATAGGGGTATTTCGATCATTTTACGCTATGAGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCG
* * * *
38711906 GTCATTTTACCCTAT-GAGGTATTTCGGTCATTTTACCTTATGAGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCG
* * * *
38711959 GTCATTTTACCTTTTGGGGGTATTTCAGTCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCG
38712013 GT
1 GT
38712015 GCAATCAATC
Statistics
Matches: 349, Mismatches: 67, Indels: 20
0.80 0.15 0.05
Matches are distributed among these distances:
47 24 0.07
48 17 0.05
53 86 0.25
54 199 0.57
55 23 0.07
ACGTcount: A:0.18, C:0.16, G:0.23, T:0.42
Consensus pattern (54 bp):
GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCG
Found at i:38711731 original size:21 final size:21
Alignment explanation
Indices: 38711698--38711737 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
38711688 GGTATTTTGG
* *
38711698 TCATTTTATCCTACGGGGGTA
1 TCATTATACCCTACGGGGGTA
*
38711719 TCATTATACCCTATGGGGG
1 TCATTATACCCTACGGGGG
38711738 ATGTCGGTCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35
Consensus pattern (21 bp):
TCATTATACCCTACGGGGGTA
Found at i:38711763 original size:47 final size:48
Alignment explanation
Indices: 38711671--38711766 Score: 131
Period size: 47 Copynumber: 2.0 Consensus size: 48
38711661 GGTATTTTGG
* * * * *
38711671 TCATTTTACCCTATGCGGGTATTTTGGTCATTTTATCCTACGGGGGTA
1 TCATTATACCCTATGCGGGGATGTCGGTCATTTTACCCTACGGGGGTA
*
38711719 TCATTATACCCTATG-GGGGATGTCGGTCATTTTACCCTATGGGGGTA
1 TCATTATACCCTATGCGGGGATGTCGGTCATTTTACCCTACGGGGGTA
38711766 T
1 T
38711767 TTCGGTCGTT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
47 28 0.67
48 14 0.33
ACGTcount: A:0.18, C:0.19, G:0.25, T:0.39
Consensus pattern (48 bp):
TCATTATACCCTATGCGGGGATGTCGGTCATTTTACCCTACGGGGGTA
Found at i:38711902 original size:209 final size:209
Alignment explanation
Indices: 38711535--38712011 Score: 600
Period size: 209 Copynumber: 2.3 Consensus size: 209
38711525 GGGTATAACA
* *
38711535 GTCATTTTACCCTATGGGGATATTTCGGTCATTTTACCCTGTGGGGGTATTTCAGTCATTCTACC
1 GTCATTTTACCCTATGGGGATATTTCGGTCATTTTACCCTATGAGGGTATTTCAGTCATTCTACC
** *
38711600 TTATGGGGGTATTTCGATCATTTTACTTATAGGGGTATTTCGATCAATTTACCTTATAAGGGGTA
66 CGATGGGGGTATTTCGATCATTTTACCTATAGGGGTATTTCGATCAATTTACCTTATAAGGGGTA
* * * *
38711665 TTTTGGTCATTTTACCCTATGCGGGTATTTTGGTCATTTTATCCTACGGGGGTATCATTATACCC
131 TTTCGATCATTTTACCCTATGAGGGTATTTTGGTCATTTTACCCTACGGGGGTATCATTATACCC
38711730 TATGGGGGATGTCG
196 TATGGGGGATGTCG
* * * *
38711744 GTCATTTTACCCTATGGGGGTATTTCGGTCGTTTTATCTTATGAGGGTATTTCAGTCATTCTACC
1 GTCATTTTACCCTATGGGGATATTTCGGTCATTTTACCCTATGAGGGTATTTCAGTCATTCTACC
* * *
38711809 CGATGGGGGTATTTCGATCATTTTACCCTAT-GGAGGTCTTTCGGTCATTTTACCTTAT-AGGGG
66 CGATGGGGGTATTTCGATCATTTTA-CCTATAGG-GGTATTTCGATCAATTTACCTTATAAGGGG
* * *
38711872 TATTTCGATCATTTTACGCTATGAGGGTATTTTGGTCATTTTACCCTA-TGAGGTATTTCGGTCA
129 TATTTCGATCATTTTACCCTATGAGGGTATTTTGGTCATTTTACCCTACGGGGGTA------TCA
* * * * *
38711936 TTTTACCTTATGAGGGTATTTTG
188 TTATACCCTATG-GGGGATGTCG
* * * *
38711959 GTCATTTTACCTTTTGGGGGTATTTCAGTCATTTTACCCTATGAGGGTATTTC
1 GTCATTTTACCCTATGGGGATATTTCGGTCATTTTACCCTATGAGGGTATTTC
38712012 GGTGCAATCA
Statistics
Matches: 229, Mismatches: 30, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
208 5 0.02
209 132 0.58
210 25 0.11
214 13 0.06
215 54 0.24
ACGTcount: A:0.18, C:0.17, G:0.23, T:0.42
Consensus pattern (209 bp):
GTCATTTTACCCTATGGGGATATTTCGGTCATTTTACCCTATGAGGGTATTTCAGTCATTCTACC
CGATGGGGGTATTTCGATCATTTTACCTATAGGGGTATTTCGATCAATTTACCTTATAAGGGGTA
TTTCGATCATTTTACCCTATGAGGGTATTTTGGTCATTTTACCCTACGGGGGTATCATTATACCC
TATGGGGGATGTCG
Found at i:38714949 original size:27 final size:27
Alignment explanation
Indices: 38714927--38715437 Score: 575
Period size: 27 Copynumber: 19.0 Consensus size: 27
38714917 AAGGGTATAA
38714927 CAGTCATTTTACCCTATGGGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
* * * *
38714954 CGGTCATTTTACCCTATAGCGATATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
* *
38714981 TAGTCATTTTACCCTAT-AGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
* *
38715007 TAGTCATTTTACCCTATGAGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
** *
38715034 TGGTTATTTTACCCTATGGGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
*
38715061 C-GATCATTGTACCCTAT-GGGGTATTT
1 CAG-TCATTTTACCCTATGGGGGTATTT
* **
38715087 CAGTCATTCTACCCTATAAGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
* **
38715114 CGGTCATTTTACCCTATTAGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
*
38715141 CAGTCATTCTACCCTAT-GGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
*
38715167 C-GATCATTTTACCCTATGAGGGTATTT
1 CAG-TCATTTTACCCTATGGGGGTATTT
* * *
38715194 CGGTCATTTTACCCTATGGGTGTATTG
1 CAGTCATTTTACCCTATGGGGGTATTT
* *
38715221 CGGTCATTTTACCCTATGGGGATATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
*
38715248 CAGTCATTTTACCCTATGGGGTTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
* * * * *
38715275 CAATTATTCTACTCTATAGGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
* *
38715302 C-GATTATTCTACCCTATGGGGGTATTT
1 CAG-TCATTTTACCCTATGGGGGTATTT
* * *
38715329 CGGTCATTTTACCTTATGAGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
**
38715356 CAGTCATTTTACCCTATAAGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
** *
38715383 TGGTCATTCTACCCTATGGGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
*
38715410 CAGTCATTTTACCCTGTGGGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTT
38715437 C
1 C
38715438 GGCCCAACGT
Statistics
Matches: 417, Mismatches: 58, Indels: 18
0.85 0.12 0.04
Matches are distributed among these distances:
25 1 0.00
26 69 0.17
27 345 0.83
28 2 0.00
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (27 bp):
CAGTCATTTTACCCTATGGGGGTATTT
Found at i:38715060 original size:80 final size:80
Alignment explanation
Indices: 38714927--38715439 Score: 615
Period size: 80 Copynumber: 6.4 Consensus size: 80
38714917 AAGGGTATAA
* * * *
38714927 CAGTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATAGCGATATTTTAGTCATTTTA
1 CAGTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCTATAGGGGTATTTTAGTCATTCTA
*
38714992 CCCTATAGGGTATTT
66 CCCTATGGGGTATTT
* * * * * *
38715007 TAGTCATTTTACCCTATGAGGGTATTTTGGTTATTTTACCCTATGGGGGTA-TTTCGATCATTGT
1 CAGTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCTATAGGGGTATTTTAG-TCATTCT
38715071 ACCCTATGGGGTATTT
65 ACCCTATGGGGTATTT
* * *
38715087 CAGTCATTCTACCCTATAAGGGTATTTCGGTCATTTTACCCTATTA-GGGTATTTCAGTCATTCT
1 CAGTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCTA-TAGGGGTATTTTAGTCATTCT
38715151 ACCCTATGGGGTATTT
65 ACCCTATGGGGTATTT
*** *
38715167 C-GATCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCTAT-GGGTGTATTGCGGTCATTT
1 CAG-TCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCTATAGGG-GTATTTTAGTCATTC
38715230 TACCCTATGGGGATATTT
64 TACCCTATGGGG-TATTT
** * * * * *
38715248 CAGTCATTTTACCCTATG-GGGTTATTTCAATTATTCTACTCTATAGGGGTA-TTTCGATTATTC
1 CAGTCATTTTACCCTATGAGGG-TATTTCGGTCATTTTACCCTATAGGGGTATTTTAG-TCATTC
38715311 TACCCTATGGGGGTATTT
64 TACCCTAT-GGGGTATTT
* * * * *
38715329 CGGTCATTTTACCTTATGAGGGTATTTCAGTCATTTTACCCTATAAGGGTATTTTGGTCATTCTA
1 CAGTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCTATAGGGGTATTTTAGTCATTCTA
38715394 CCCTATGGGGGTATTT
66 CCCTAT-GGGGTATTT
* *
38715410 CAGTCATTTTACCCTGTGGGGGTATTTCGG
1 CAGTCATTTTACCCTATGAGGGTATTTCGG
38715440 CCCAACGTGG
Statistics
Matches: 371, Mismatches: 48, Indels: 27
0.83 0.11 0.06
Matches are distributed among these distances:
79 8 0.02
80 198 0.53
81 150 0.40
82 15 0.04
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (80 bp):
CAGTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCTATAGGGGTATTTTAGTCATTCTA
CCCTATGGGGTATTT
Found at i:38721013 original size:7 final size:7
Alignment explanation
Indices: 38721001--38721038 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
38720991 ATCCAAAATA
38721001 AATGTCC
1 AATGTCC
38721008 AATGTCC
1 AATGTCC
38721015 AATGTCC
1 AATGTCC
*
38721022 AATGTCT
1 AATGTCC
*
38721029 AAAGTCC
1 AATGTCC
38721036 AAT
1 AAT
38721039 TACAATAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29
Consensus pattern (7 bp):
AATGTCC
Found at i:38730761 original size:95 final size:95
Alignment explanation
Indices: 38730595--38730792 Score: 333
Period size: 95 Copynumber: 2.1 Consensus size: 95
38730585 TGGCCCACAT
38730595 GGCCACACCCACACCACCACACAGCCGTGTCTTGCGCAGGGCTGCACCTTTGTCAGACACACGGC
1 GGCCACACCCACACCACCACACAGCCGTGTCTTGCGCAGGGCTGCACCTTTGTCAGACACACGGC
* * *
38730660 TGTGTCTCGCATACAGCCAACTACACGGCC
66 TATGTCTCGCATACAGCCAACCACACGACC
* * *
38730690 GGCCACACCCACATCACCACACAGCCGTGTCTTGCGGAGGGCTGCACCTTTGTCAGATACACGGC
1 GGCCACACCCACACCACCACACAGCCGTGTCTTGCGCAGGGCTGCACCTTTGTCAGACACACGGC
38730755 TATGTCTCGCATACAGCCAACCACACGACC
66 TATGTCTCGCATACAGCCAACCACACGACC
*
38730785 GACCACAC
1 GGCCACAC
38730793 GCCGGTGTGG
Statistics
Matches: 96, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
95 96 1.00
ACGTcount: A:0.24, C:0.39, G:0.21, T:0.16
Consensus pattern (95 bp):
GGCCACACCCACACCACCACACAGCCGTGTCTTGCGCAGGGCTGCACCTTTGTCAGACACACGGC
TATGTCTCGCATACAGCCAACCACACGACC
Found at i:38734958 original size:26 final size:26
Alignment explanation
Indices: 38734929--38734982 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
38734919 GATGTACTTT
38734929 AGCACTCTCATAATCATTAGAAGAAG
1 AGCACTCTCATAATCATTAGAAGAAG
38734955 AGCACTCTCATAATCATTAGAAGAAG
1 AGCACTCTCATAATCATTAGAAGAAG
38734981 AG
1 AG
38734983 TTTTATTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.22
Consensus pattern (26 bp):
AGCACTCTCATAATCATTAGAAGAAG
Found at i:38741538 original size:40 final size:40
Alignment explanation
Indices: 38741478--38741555 Score: 147
Period size: 40 Copynumber: 1.9 Consensus size: 40
38741468 TTGAGAGTTA
*
38741478 GACATTTAATTTGTTTTTGGGAGAATAATTTTGTAAGAAT
1 GACATTTAATTTGTTCTTGGGAGAATAATTTTGTAAGAAT
38741518 GACATTTAATTTGTTCTTGGGAGAATAATTTTGTAAGA
1 GACATTTAATTTGTTCTTGGGAGAATAATTTTGTAAGA
38741556 GTGTTATTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.32, C:0.04, G:0.21, T:0.44
Consensus pattern (40 bp):
GACATTTAATTTGTTCTTGGGAGAATAATTTTGTAAGAAT
Found at i:38755633 original size:18 final size:20
Alignment explanation
Indices: 38755585--38755634 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 20
38755575 TCACTCTCAA
38755585 TCTCTTTTTGCTCTTTTTCAT
1 TCTCTTTTT-CTCTTTTTCAT
* *
38755606 TCTCTGTTTCT-TTTTTGAT
1 TCTCTTTTTCTCTTTTTCAT
38755625 T-TCTTTTTCT
1 TCTCTTTTTCT
38755635 GTCTTTCTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
18 8 0.31
19 8 0.31
20 2 0.08
21 8 0.31
ACGTcount: A:0.04, C:0.20, G:0.06, T:0.70
Consensus pattern (20 bp):
TCTCTTTTTCTCTTTTTCAT
Found at i:38757346 original size:27 final size:27
Alignment explanation
Indices: 38757299--38757352 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
38757289 GTGATTAAAT
38757299 AAAATCGACACAAGCAGAATTTAAAAGA
1 AAAATCGACACAAGCAGAA-TTAAAAGA
*
38757327 AAAATTGACAGCAAG-A-AATTAAAAGA
1 AAAATCGACA-CAAGCAGAATTAAAAGA
38757353 TAAGTCCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 8 0.33
27 2 0.08
28 10 0.42
29 4 0.17
ACGTcount: A:0.59, C:0.11, G:0.15, T:0.15
Consensus pattern (27 bp):
AAAATCGACACAAGCAGAATTAAAAGA
Found at i:38757549 original size:25 final size:26
Alignment explanation
Indices: 38757497--38757549 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
38757487 ACTTCTAAAG
* *
38757497 AAAACTCAAGAGAGAATTCTTGGAGA
1 AAAACTCAAGAGAAAATTCTTGCAGA
38757523 AAAACTCAAG-GAAAATTC-TGCACGA
1 AAAACTCAAGAGAAAATTCTTGCA-GA
38757548 AA
1 AA
38757550 TTTTTGATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 3 0.12
25 11 0.46
26 10 0.42
ACGTcount: A:0.49, C:0.15, G:0.19, T:0.17
Consensus pattern (26 bp):
AAAACTCAAGAGAAAATTCTTGCAGA
Found at i:38758775 original size:26 final size:27
Alignment explanation
Indices: 38758743--38758805 Score: 94
Period size: 26 Copynumber: 2.4 Consensus size: 27
38758733 CATATTTTCT
*
38758743 CAAAATTTTACCATGGACAAAATCA-A
1 CAAAATTTTACCAAGGACAAAATCATA
*
38758769 CAAAATTTTACCAAGGATAAAATCATA
1 CAAAATTTTACCAAGGACAAAATCATA
38758796 -AAAATTTTAC
1 CAAAATTTTAC
38758806 TAAAGGTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
26 33 0.97
27 1 0.03
ACGTcount: A:0.51, C:0.16, G:0.06, T:0.27
Consensus pattern (27 bp):
CAAAATTTTACCAAGGACAAAATCATA
Found at i:38758815 original size:26 final size:26
Alignment explanation
Indices: 38758743--38758816 Score: 80
Period size: 26 Copynumber: 2.8 Consensus size: 26
38758733 CATATTTTCT
* * *
38758743 CAAAATTTTACCATGGACAAAATCAA
1 CAAAATTTTACAAAGGATAAAATCAA
*
38758769 CAAAATTTTACCAAGGATAAAATCATA
1 CAAAATTTTACAAAGGATAAAATCA-A
38758796 -AAAATTTTACTAAAGG-TAAAA
1 CAAAATTTTAC-AAAGGATAAAA
38758817 CAGGGATGAG
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
26 38 0.88
27 5 0.12
ACGTcount: A:0.53, C:0.14, G:0.08, T:0.26
Consensus pattern (26 bp):
CAAAATTTTACAAAGGATAAAATCAA
Found at i:38760142 original size:53 final size:53
Alignment explanation
Indices: 38760062--38760169 Score: 216
Period size: 53 Copynumber: 2.0 Consensus size: 53
38760052 TCTCACTTTT
38760062 TCAATCATCCCTCACTCATTCATCATTCTCTCCTCTCTCAACTCTCTTAGCTA
1 TCAATCATCCCTCACTCATTCATCATTCTCTCCTCTCTCAACTCTCTTAGCTA
38760115 TCAATCATCCCTCACTCATTCATCATTCTCTCCTCTCTCAACTCTCTTAGCTA
1 TCAATCATCCCTCACTCATTCATCATTCTCTCCTCTCTCAACTCTCTTAGCTA
38760168 TC
1 TC
38760170 TTTCCCCCTC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.20, C:0.40, G:0.02, T:0.38
Consensus pattern (53 bp):
TCAATCATCCCTCACTCATTCATCATTCTCTCCTCTCTCAACTCTCTTAGCTA
Found at i:38764951 original size:24 final size:24
Alignment explanation
Indices: 38764903--38764949 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
38764893 ACTGGTCATA
*
38764903 GAGAGAATTGAGGAGGTATATTTG
1 GAGAGAATTGAGGAGGAATATTTG
38764927 GAGAG-ATATGAGGAGAGAATATT
1 GAGAGAAT-TGAGGAG-GAATATT
38764950 GGGATATGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 2 0.10
24 12 0.60
25 6 0.30
ACGTcount: A:0.38, C:0.00, G:0.36, T:0.26
Consensus pattern (24 bp):
GAGAGAATTGAGGAGGAATATTTG
Found at i:38765667 original size:27 final size:27
Alignment explanation
Indices: 38765624--38766278 Score: 629
Period size: 27 Copynumber: 24.5 Consensus size: 27
38765614 CGATATCTGC
*
38765624 ACTGAAATACCCTCATAGGGTAAAATG
1 ACTGAAATACCCCCATAGGGTAAAATG
* *
38765651 ACTAAAATACCCCCATAGGGTATAATG
1 ACTGAAATACCCCCATAGGGTAAAATG
** * *
38765678 ACCAAAATACCCCTATAGGGTAGAATG
1 ACTGAAATACCCCCATAGGGTAAAATG
38765705 ACTGAAATACCCCCATAGGGTAAAATG
1 ACTGAAATACCCCCATAGGGTAAAATG
* * *
38765732 ACCGAAATA-CCTCATAAGGTAAAATG
1 ACTGAAATACCCCCATAGGGTAAAATG
*
38765758 ATTGAAATA-CCCCATAGGGTAAAATG
1 ACTGAAATACCCCCATAGGGTAAAATG
** *
38765784 ACCAAAATGCCCCCATAGGGT-AAAT-
1 ACTGAAATACCCCCATAGGGTAAAATG
* * *
38765809 AATCGAAATACCCCAATAGGATAAAATG
1 ACT-GAAATACCCCCATAGGGTAAAATG
*
38765837 ACTGAAATACCCTCATAGGGTAAAATG
1 ACTGAAATACCCCCATAGGGTAAAATG
*
38765864 ACTGAAATACTCCCATAGGGTAAAAT-
1 ACTGAAATACCCCCATAGGGTAAAATG
* * *
38765890 AGCCGAAATACCCTCATATGGTAAAATG
1 A-CTGAAATACCCCCATAGGGTAAAATG
* *
38765918 -GTCGAAATA-CCCCAGTAGGATAAAATG
1 ACT-GAAATACCCCCA-TAGGGTAAAATG
* *
38765945 ACTGAAATACCCTCATAGGGTAGAATG
1 ACTGAAATACCCCCATAGGGTAAAATG
*
38765972 ACTGAAATA-CCCCATAGGGTAAAATA
1 ACTGAAATACCCCCATAGGGTAAAATG
* **
38765998 ACCGAAATACCTTCATAGGGTAAAATG
1 ACTGAAATACCCCCATAGGGTAAAATG
** * *
38766025 A-TCGAAATACCCCTGTAAGGTAAAATA
1 ACT-GAAATACCCCCATAGGGTAAAATG
* *
38766052 ACCGAAATA-CCCTATAGGGTAAAATG
1 ACTGAAATACCCCCATAGGGTAAAATG
* * *
38766078 ACTGAAATGCCTCCATAGGGTAATAT-
1 ACTGAAATACCCCCATAGGGTAAAATG
*
38766104 AATCGAAATACCCCCATAGGGTAAAAT-
1 ACT-GAAATACCCCCATAGGGTAAAATG
* *
38766131 AATCGAAATACCCCCATAAGGTAAAATG
1 ACT-GAAATACCCCCATAGGGTAAAATG
** * * *
38766159 ACCAAAATACCCCCATAGTGAAAAATT
1 ACTGAAATACCCCCATAGGGTAAAATG
* *
38766186 AC-GAAATATCCCCATAGGTTAAAATG
1 ACTGAAATACCCCCATAGGGTAAAATG
* *
38766212 A-TCGAAATAACCCTATAGGGTAAAATG
1 ACT-GAAATACCCCCATAGGGTAAAATG
* *
38766239 A-TCGAAATACCCCGATAGGGTAAAATA
1 ACT-GAAATACCCCCATAGGGTAAAATG
**
38766266 ACTGTTATACCCC
1 ACTGAAATACCCC
38766279 TAGTAGATAA
Statistics
Matches: 514, Mismatches: 95, Indels: 38
0.79 0.15 0.06
Matches are distributed among these distances:
25 1 0.00
26 129 0.25
27 375 0.73
28 9 0.02
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.21
Consensus pattern (27 bp):
ACTGAAATACCCCCATAGGGTAAAATG
Found at i:38766020 original size:107 final size:106
Alignment explanation
Indices: 38765624--38766269 Score: 750
Period size: 107 Copynumber: 6.0 Consensus size: 106
38765614 CGATATCTGC
* * * *
38765624 ACTGAAATACCCTCATAGGGTAAAATGACTAAAATACCCCCATAGGGTATAATGACCAAAATACC
1 ACTGAAATACCCTCATAGGGTAAAATGACTGAAATA-CCCCATAGGGTAAAATAACCGAAATACC
* *
38765689 CCTATAGGGTAGAATGA-CTGAAATACCCCCA-TAGGGTAAAATG
65 CCCATAGGGTAAAATGATC-GAAATA-CCCCAGTA-GGTAAAATG
* * * * * *
38765732 ACCGAAATA-CCTCATAAGGTAAAATGATTGAAATACCCCATAGGGTAAAATGACCAAAATGCCC
1 ACTGAAATACCCTCATAGGGTAAAATGACTGAAATACCCCATAGGGTAAAATAACCGAAATACCC
* *
38765796 CCATAGGGT-AAATAATCGAAATACCCCAATAGGATAAAATG
66 CCATAGGGTAAAATGATCGAAATACCCCAGTAGG-TAAAATG
*
38765837 ACTGAAATACCCTCATAGGGTAAAATGACTGAAATACTCCCATAGGGTAAAATAGCCGAAATACC
1 ACTGAAATACCCTCATAGGGTAAAATGACTGAAATAC-CCCATAGGGTAAAATAACCGAAATACC
* * *
38765902 CTCATATGGTAAAATGGTCGAAATACCCCAGTAGGATAAAATG
65 CCCATAGGGTAAAATGATCGAAATACCCCAGTAGG-TAAAATG
* *
38765945 ACTGAAATACCCTCATAGGGTAGAATGACTGAAATACCCCATAGGGTAAAATAACCGAAATACCT
1 ACTGAAATACCCTCATAGGGTAAAATGACTGAAATACCCCATAGGGTAAAATAACCGAAATACCC
* * *
38766010 TCATAGGGTAAAATGATCGAAATACCCCTGTAAGGTAAAATA
66 CCATAGGGTAAAATGATCGAAATACCCCAGT-AGGTAAAATG
* * * *
38766052 ACCGAAATACCCT-ATAGGGTAAAATGACTGAAATGCCTCCATAGGGTAATATAATCGAAATACC
1 ACTGAAATACCCTCATAGGGTAAAATGACTGAAATACC-CCATAGGGTAAAATAACCGAAATACC
*
38766116 CCCATAGGGTAAAATAATCGAAATACCCCCA-TAAGGTAAAATG
65 CCCATAGGGTAAAATGATCGAAATA-CCCCAGT-AGGTAAAATG
** * * * * * * * *
38766159 ACCAAAATACCCCCATAGTGAAAAATTAC-GAAATATCCCCATAGGTTAAAATGATCGAAATAAC
1 ACTGAAATACCCTCATAGGGTAAAATGACTGAAATA-CCCCATAGGGTAAAATAACCGAAATACC
* *
38766223 CCTATAGGGTAAAATGATCGAAATACCCC-GATAGGGTAAAATA
65 CCCATAGGGTAAAATGATCGAAATACCCCAG-TA-GGTAAAATG
38766266 ACTG
1 ACTG
38766270 TTATACCCCT
Statistics
Matches: 471, Mismatches: 53, Indels: 29
0.85 0.10 0.05
Matches are distributed among these distances:
104 7 0.01
105 27 0.06
106 88 0.19
107 255 0.54
108 94 0.20
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.21
Consensus pattern (106 bp):
ACTGAAATACCCTCATAGGGTAAAATGACTGAAATACCCCATAGGGTAAAATAACCGAAATACCC
CCATAGGGTAAAATGATCGAAATACCCCAGTAGGTAAAATG
Found at i:38766544 original size:26 final size:26
Alignment explanation
Indices: 38766513--38766581 Score: 77
Period size: 26 Copynumber: 2.7 Consensus size: 26
38766503 ACTGTTCCTA
38766513 GCAGCTTTGCTGCGATACTGA-TACTG
1 GCAGCTTTGCTGCGATACT-ATTACTG
* * * *
38766539 GTAGCTCTGCTGCAATGCTATTACTG
1 GCAGCTTTGCTGCGATACTATTACTG
*
38766565 GCAGCTTTGTTGCGATA
1 GCAGCTTTGCTGCGATA
38766582 TTGGTCTATT
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
25 1 0.03
26 32 0.97
ACGTcount: A:0.19, C:0.22, G:0.26, T:0.33
Consensus pattern (26 bp):
GCAGCTTTGCTGCGATACTATTACTG
Found at i:38766731 original size:28 final size:28
Alignment explanation
Indices: 38766683--38766883 Score: 230
Period size: 28 Copynumber: 7.2 Consensus size: 28
38766673 TATTGCACTG
*
38766683 CACTG-TTACTGTATTGGGCTAAGGCCAA
1 CACTGATT-CTGTATTGGGCTAAGGCCCA
* *
38766711 TATTGATTCTGTATTGGGCTAAGGCCCA
1 CACTGATTCTGTATTGGGCTAAGGCCCA
*
38766739 CACTG-TTACTGTATTGGGATAAGGCCCA
1 CACTGATT-CTGTATTGGGCTAAGGCCCA
*
38766767 CACTGATTCTATATTGGGCTAAGGCCCA
1 CACTGATTCTGTATTGGGCTAAGGCCCA
* *
38766795 CACTGATTATGTATTGGGCTAATGCCCA
1 CACTGATTCTGTATTGGGCTAAGGCCCA
* *
38766823 CACTG-TTACTGTATTGGGTTAAGGCCTA
1 CACTGATT-CTGTATTGGGCTAAGGCCCA
* *
38766851 CACAG-TTACTGTATTGGGCTAAGACCCA
1 CACTGATT-CTGTATTGGGCTAAGGCCCA
*
38766879 TACTG
1 CACTG
38766884 TACTATCACT
Statistics
Matches: 148, Mismatches: 21, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
27 4 0.03
28 140 0.95
29 4 0.03
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.31
Consensus pattern (28 bp):
CACTGATTCTGTATTGGGCTAAGGCCCA
Found at i:38766824 original size:84 final size:84
Alignment explanation
Indices: 38766687--38766883 Score: 279
Period size: 84 Copynumber: 2.3 Consensus size: 84
38766677 GCACTGCACT
* * * *
38766687 GTTACTGTATTGGGCTAAGGCCAATATTGATTCTGTATTGGGCTAAGGCCCACACTGTTACTGTA
1 GTTACTATATTGGGCTAAGGCCCATACTGATTATGTATTGGGCTAAGGCCCACACTGTTACTGTA
*
38766752 TTGGGATAAGGCCCACACT
66 TTGGGATAAGGCCCACACA
* *
38766771 GATT-CTATATTGGGCTAAGGCCCACACTGATTATGTATTGGGCTAATGCCCACACTGTTACTGT
1 G-TTACTATATTGGGCTAAGGCCCATACTGATTATGTATTGGGCTAAGGCCCACACTGTTACTGT
* *
38766835 ATTGGGTTAAGGCCTACACA
65 ATTGGGATAAGGCCCACACA
* *
38766855 GTTACTGTATTGGGCTAAGACCCATACTG
1 GTTACTATATTGGGCTAAGGCCCATACTG
38766884 TACTATCACT
Statistics
Matches: 99, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
83 2 0.02
84 95 0.96
85 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (84 bp):
GTTACTATATTGGGCTAAGGCCCATACTGATTATGTATTGGGCTAAGGCCCACACTGTTACTGTA
TTGGGATAAGGCCCACACA
Found at i:38766884 original size:56 final size:56
Alignment explanation
Indices: 38766683--38766883 Score: 271
Period size: 56 Copynumber: 3.6 Consensus size: 56
38766673 TATTGCACTG
* * *
38766683 CACTGTTACTGTATTGGGCTAAGGCCAATATTGATTCTGTATTGGGCTAAGGCCCA
1 CACTGTTACTGTATTGGGCTAAGGCCCACACTGATTCTGTATTGGGCTAAGGCCCA
* *
38766739 CACTGTTACTGTATTGGGATAAGGCCCACACTGATTCTATATTGGGCTAAGGCCCA
1 CACTGTTACTGTATTGGGCTAAGGCCCACACTGATTCTGTATTGGGCTAAGGCCCA
* * *
38766795 CACTGATTA-TGTATTGGGCTAATGCCCACACTG-TTACTGTATTGGGTTAAGGCCTA
1 CACTG-TTACTGTATTGGGCTAAGGCCCACACTGATT-CTGTATTGGGCTAAGGCCCA
* * *
38766851 CACAGTTACTGTATTGGGCTAAGACCCATACTG
1 CACTGTTACTGTATTGGGCTAAGGCCCACACTG
38766884 TACTATCACT
Statistics
Matches: 128, Mismatches: 14, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
55 5 0.04
56 120 0.94
57 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.31
Consensus pattern (56 bp):
CACTGTTACTGTATTGGGCTAAGGCCCACACTGATTCTGTATTGGGCTAAGGCCCA
Found at i:38772584 original size:21 final size:20
Alignment explanation
Indices: 38772532--38772610 Score: 90
Period size: 19 Copynumber: 3.9 Consensus size: 20
38772522 AAATTAAATC
* *
38772532 TCTAAGATTACAAAATCATA
1 TCTAAGATTGCAATATCATA
38772552 TCTTCCAAGATTGCATATATCATA
1 TC-T--AAGATTGCA-ATATCATA
38772576 TCTAAGATTGC-ATATCATA
1 TCTAAGATTGCAATATCATA
38772595 TCTAAGATTGC-ATATC
1 TCTAAGATTGCAATATC
38772611 CTTGAAGATT
Statistics
Matches: 53, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
19 24 0.45
20 2 0.04
21 9 0.17
23 9 0.17
24 9 0.17
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.35
Consensus pattern (20 bp):
TCTAAGATTGCAATATCATA
Found at i:38773033 original size:44 final size:44
Alignment explanation
Indices: 38772983--38773488 Score: 412
Period size: 44 Copynumber: 11.5 Consensus size: 44
38772973 ACCAGTATGG
* * * * **
38772983 GAAGACAAAATCTGCTACCTTTCATCTATTTCATGCTGATACAT
1 GAAGACAAGATCTGCTATCTTTCATCTACTTCACGCCAATACAT
*
38773027 GAAGACAAGATCTGCTTTC-TTCGATCTACTT--CGCCAATACAT
1 GAAGACAAGATCTGCTATCTTTC-ATCTACTTCACGCCAATACAT
* *
38773069 GAAGACAAGATCTACTTTC-TTCGATCTACTTTGCCACGCCAATACAT
1 GAAGACAAGATCTGCTATCTTTC-ATCTAC-TT--CACGCCAATACAT
* * *
38773116 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAACAAAT
1 GAAGACAAGATCTGCTATCTTTCATCTACTTCACGCCAATACAT
* * *
38773160 GAAGACAAGATCTGCTTTC-TTCGATCTACTT--CGCCACTAGTAT
1 GAAGACAAGATCTGCTATCTTTC-ATCTACTTCACGCCAATA-CAT
*
38773203 GGGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATACAT
1 --GAAGACAAGATCTGCTATCTTTCATCTACTTCACGCCAATACAT
* * *
38773249 GAAGACAAGATATGCTATCTTTGATCTACTTCACGCTAATACAT
1 GAAGACAAGATCTGCTATCTTTCATCTACTTCACGCCAATACAT
* * * * *
38773293 GAAGACAAGATTTGCTTTC-TTCGATCTACTTCGTCACCAGT--AT
1 GAAGACAAGATCTGCTATCTTTC-ATCTACTTC-ACGCCAATACAT
* *
38773336 G-GGAACACGATCTGCTATC-TTCGATCTACTTCACGCCAATACAT
1 GAAG-ACAAGATCTGCTATCTTTC-ATCTACTTCACGCCAATACAT
* * * * *
38773380 GACGACAAGATCTACTATCTTTGATCTACTTCACGCAAATACAG
1 GAAGACAAGATCTGCTATCTTTCATCTACTTCACGCCAATACAT
* * * * * * * *
38773424 GTAGGCAAG-GCTAG-TATCTTTGATCTGCTTCACTGTCAGTACAG
1 GAAGACAAGATCT-GCTATCTTTCATCTACTTCAC-GCCAATACAT
*
38773468 GAAGGCAAGATCTGC-ATCTTT
1 GAAGACAAGATCTGCTATCTTT
38773489 AACCTGCTCC
Statistics
Matches: 382, Mismatches: 55, Indels: 50
0.78 0.11 0.10
Matches are distributed among these distances:
42 48 0.13
43 59 0.15
44 191 0.50
45 35 0.09
46 6 0.02
47 41 0.11
48 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (44 bp):
GAAGACAAGATCTGCTATCTTTCATCTACTTCACGCCAATACAT
Found at i:38773114 original size:89 final size:86
Alignment explanation
Indices: 38772953--38773411 Score: 458
Period size: 89 Copynumber: 5.2 Consensus size: 86
38772943 ATAAGACTTG
* * * * * * *
38772953 TATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAAATCTGCTACCTTTC-ATCTATTTCAT
1 TATCTTTGATCTACTTCGCCAACA-CAT--GAAGACAAGATCTGCTATC-TTCGATCTACTTCAC
**
38773017 GCTGATACATGAAGACAAGATCTGC
62 GCCAATACATGAAGACAAGATCTGC
* * * * *
38773042 TTTCTTCGATCTACTTCGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTTTGCCACG
1 TATCTTTGATCTACTTCGCCAACACATGAAGACAAGATCTGCTATCTTCGATCTAC-TT--CACG
38773107 CCAATACATGAAGACAAGATCTGC
63 CCAATACATGAAGACAAGATCTGC
* *
38773131 TATCTTTGATCTACTTCACGCCAACAAATGAAGACAAGATCTGCTTTCTTCGATCTACTT--CGC
1 TATCTTTGATCTACTT--CGCCAACACATGAAGACAAGATCTGCTATCTTCGATCTACTTCACGC
* *
38773194 CACTAGTATGGGAAGACAAGATCTGC
64 CAATA-CAT--GAAGACAAGATCTGC
* * *
38773220 TATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATATGCTATCTTTGATCTACTTCACGC
1 TATCTTTGATCTACTT--CGCCAACACATGAAGACAAGATCTGCTATCTTCGATCTACTTCACGC
* *
38773285 TAATACATGAAGACAAGATTTGC
64 CAATACATGAAGACAAGATCTGC
* * * * * * *
38773308 TTTCTTCGATCTACTTCGTCACCAGTATG-GGAACACGATCTGCTATCTTCGATCTACTTCACGC
1 TATCTTTGATCTACTTCGCCAACA-CATGAAG-ACAAGATCTGCTATCTTCGATCTACTTCACGC
* *
38773372 CAATACATGACGACAAGATCTAC
64 CAATACATGAAGACAAGATCTGC
38773395 TATCTTTGATCTACTTC
1 TATCTTTGATCTACTTC
38773412 ACGCAAATAC
Statistics
Matches: 313, Mismatches: 44, Indels: 28
0.81 0.11 0.07
Matches are distributed among these distances:
85 3 0.01
86 33 0.11
87 70 0.22
88 30 0.10
89 130 0.42
90 4 0.01
91 43 0.14
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (86 bp):
TATCTTTGATCTACTTCGCCAACACATGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCA
ATACATGAAGACAAGATCTGC
Found at i:38773162 original size:133 final size:131
Alignment explanation
Indices: 38772983--38773422 Score: 605
Period size: 133 Copynumber: 3.3 Consensus size: 131
38772973 ACCAGTATGG
* * * * * *
38772983 GAAGACAAAATCTGCTACCTTTCATCTATTTCATGCTGATACATGAAGACAAGATCTGCTTTCTT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCTAATACATGAAGACAAGATCTGCTTTCTT
* * * *
38773048 CGATCTACTTCGCCAATA-CATGAAGACAAGATCTACTTTCTTCGATCTACTTTGCCACGCCAAT
66 CGATCTACTTCGCCACTAGTATGAAGACAAGATCTGCTATCTTCGATCTAC-TT--CACGCCAAT
38773112 ACAT
128 ACAT
* * *
38773116 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAACAAATGAAGACAAGATCTGCTTTCTT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCTAATACATGAAGACAAGATCTGCTTTCTT
*
38773181 CGATCTACTTCGCCACTAGTATGGGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATA
66 CGATCTACTTCGCCACTAGTAT--GAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATA
38773246 CAT
129 CAT
* *
38773249 GAAGACAAGATATGCTATCTTTGATCTACTTCACGCTAATACATGAAGACAAGATTTGCTTTCTT
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCTAATACATGAAGACAAGATCTGCTTTCTT
* * * *
38773314 CGATCTACTTCGTCACCAGTATG-GGAACACGATCTGCTATCTTCGATCTACTTCACGCCAATAC
66 CGATCTACTTCGCCACTAGTATGAAG-ACAAGATCTGCTATCTTCGATCTACTTCACGCCAATAC
38773378 AT
130 AT
* * *
38773380 GACGACAAGATCTACTATCTTTGATCTACTTCACGCAAATACA
1 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCTAATACA
38773423 GGTAGGCAAG
Statistics
Matches: 275, Mismatches: 28, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
130 1 0.00
131 78 0.28
133 166 0.60
134 2 0.01
135 2 0.01
136 26 0.09
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.30
Consensus pattern (131 bp):
GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCTAATACATGAAGACAAGATCTGCTTTCTT
CGATCTACTTCGCCACTAGTATGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACA
T
Found at i:38773442 original size:87 final size:89
Alignment explanation
Indices: 38773021--38773488 Score: 433
Period size: 89 Copynumber: 5.3 Consensus size: 89
38773011 TTTCATGCTG
* * * *
38773021 ATACATGAAGACAAGATCTGCTTTCTTCGATCTACTT--CGCCAATACATGAAGACAAGATCTA-
1 ATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATACAGGAAGACAAGAGCTAG
*
38773083 CTTTCTTCGATCTACTTTGCCACGCCA
66 CTATCTTCGATCTAC-TT--CACGCCA
* * * *
38773110 ATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAACAAATGAAGACAAGATCT-G
1 ATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATACAGGAAGACAAGAGCTAG
*
38773174 CTTTCTTCGATCTACTT--CGCCA
66 CTATCTTCGATCTACTTCACGCCA
* * *
38773196 CTAGTATGGGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGA--
1 ATA-CAT--GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATACAGGAAGACAAGAGC
* *
38773259 TATGCTATCTTTGATCTACTTCACGCTA
63 TA-GCTATCTTCGATCTACTTCACGCCA
* * * * * * * * * *
38773287 ATACATGAAGACAAGATTTGCTTTCTTCGATCTACTTCGTCACCAGTA-TGGGA-ACACGATCT-
1 ATACATGAAGACAAGATCTGCTATCTTTGATCTACTTC-ACGCCAATACAGGAAGACAAGAGCTA
38773349 GCTATCTTCGATCTACTTCACGCCA
65 GCTATCTTCGATCTACTTCACGCCA
* * * * *
38773374 ATACATGACGACAAGATCTACTATCTTTGATCTACTTCACGCAAATACAGGTAGGCAAG-GCTAG
1 ATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATACAGGAAGACAAGAGCTAG
* * *
38773438 -TATCTTTGATCTGCTTCACTGTCA
66 CTATCTTCGATCTACTTCAC-GCCA
* * *
38773462 GTACAGGAAGGCAAGATCTGC-ATCTTT
1 ATACATGAAGACAAGATCTGCTATCTTT
38773489 AACCTGCTCC
Statistics
Matches: 315, Mismatches: 47, Indels: 36
0.79 0.12 0.09
Matches are distributed among these distances:
86 12 0.04
87 92 0.29
88 54 0.17
89 110 0.35
90 4 0.01
91 43 0.14
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.30
Consensus pattern (89 bp):
ATACATGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATACAGGAAGACAAGAGCTAG
CTATCTTCGATCTACTTCACGCCA
Found at i:38773496 original size:44 final size:44
Alignment explanation
Indices: 38773448--38773765 Score: 139
Period size: 44 Copynumber: 7.2 Consensus size: 44
38773438 TATCTTTGAT
* *
38773448 CTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGCATCTTTAAC
1 CTGCTCCACTGTCAGTACAGGAAGGCAAGATCTGCATCTTCAAC
* *** * * * * *
38773492 CTGCTCCACT-ACAACCCAGGGAGGCAAG-GCTGGTATCTTCGAT
1 CTGCTCCACTGTCAGTACAGGAAGGCAAGATCT-GCATCTTCAAC
* * * * *
38773535 CTACTTCGCTTTCGGTACAGGAAGGCAAGATCTGCTATCTTCAAC
1 CTGCTCCACTGTCAGTACAGGAAGGCAAGATCTGC-ATCTTCAAC
** ** * * * * *
38773580 CTGCTCCACTACCA-CCCAGGGAGGCAAG-GCTGGTATCTTCGAT
1 CTGCTCCACTGTCAGTACAGGAAGGCAAGATCT-GCATCTTCAAC
* * *
38773623 CTGCTTCACTGT-TGATGCAGGAAGGCAAGATCTGCTATCTTCAAC
1 CTGCTCCACTGTCAG-TACAGGAAGGCAAGATCTGC-ATCTTCAAC
* *** * * * * *
38773668 CTGCTCCACT-ACAACCCAGGGAGGCAAG-GCTGGTATCTTCGAT
1 CTGCTCCACTGTCAGTACAGGAAGGCAAGATCT-GCATCTTCAAC
* * *
38773711 CTGCTTCGCTGTC-GATACAGGAAGACAAGATCTGCTATCTTCAAC
1 CTGCTCCACTGTCAG-TACAGGAAGGCAAGATCTGC-ATCTTCAAC
*
38773756 CTCCTCCACT
1 CTGCTCCACT
38773766 ACAACCCAGG
Statistics
Matches: 185, Mismatches: 74, Indels: 29
0.64 0.26 0.10
Matches are distributed among these distances:
42 2 0.01
43 62 0.34
44 70 0.38
45 51 0.28
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.25
Consensus pattern (44 bp):
CTGCTCCACTGTCAGTACAGGAAGGCAAGATCTGCATCTTCAAC
Found at i:38773609 original size:88 final size:88
Alignment explanation
Indices: 38773421--38774451 Score: 1494
Period size: 88 Copynumber: 11.6 Consensus size: 88
38773411 CACGCAAATA
* * * * *
38773421 CAGGTAGGCAAGGCTAGTATCTTTGATCTGCTTCACTGTC-AGTACAGGAAGGCAAGATCTGC-A
1 CAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCGA-TGCAGGAAGGCAAGATCTGCTA
*
38773484 TCTTTAACCTGCTCCACTACAACC
65 TCTTCAACCTGCTCCACTACAACC
* * * *
38773508 CAGGGAGGCAAGGCTGGTATCTTCGATCTACTTCGCTTTCGGTACAGGAAGGCAAGATCTGCTAT
1 CAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTAT
*
38773573 CTTCAACCTGCTCCACTACCACC
66 CTTCAACCTGCTCCACTACAACC
* *
38773596 CAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTTGATGCAGGAAGGCAAGATCTGCTAT
1 CAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTAT
38773661 CTTCAACCTGCTCCACTACAACC
66 CTTCAACCTGCTCCACTACAACC
* *
38773684 CAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCGATACAGGAAGACAAGATCTGCTAT
1 CAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTAT
*
38773749 CTTCAACCTCCTCCACTACAACC
66 CTTCAACCTGCTCCACTACAACC
* *
38773772 CAGGGAGGCAAGGCTGGTATCTTCGATCCT-CTTCGCTGTCGATGCAGGAAGACAAGATATGCTA
1 CAGGGAGGCAAGGCTGGTATCTTCGAT-CTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTA
* *
38773836 TCTTTAACCTGCTCCATTACAACC
65 TCTTCAACCTGCTCCACTACAACC
* * *
38773860 CAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCGATGCAGAAAGGAAAGATCTGCTAC
1 CAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTAT
**
38773925 CTTCAACCTGCTCCACTAGGACC
66 CTTCAACCTGCTCCACTACAACC
* * * *
38773948 CAGGGAGGCAAGGTTGGTATCTTCGATCTTCTTCGCTATCGATGTAGGAAGGCAAGATCTGCTAT
1 CAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTAT
38774013 CTTCAACCTGCTCCACTACAACCACTACAACC
66 CTTCAACCTG-----CT----CCACTACAACC
* * * *
38774045 CAAGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGTTATCGATGCAGGAAGGCAAGATCTACTAT
1 CAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTAT
38774110 CTTCAACCTGCTCCACTACAACC
66 CTTCAACCTGCTCCACTACAACC
*
38774133 CAGGGAGGCAAGGTTGGTATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGC-AT
1 CAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTAT
* *
38774197 CTTTAACCTGCCCCACTACAACC
66 CTTCAACCTGCTCCACTACAACC
* * * * *
38774220 CAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCGGTACAGGAAGCCAAGATCTGCTAT
1 CAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTAT
38774285 CTTCAACCTGCTCCACTACAACC
66 CTTCAACCTGCTCCACTACAACC
* *
38774308 TAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGATGCAGGAAGGCAAGATCTGCTAT
1 CAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTAT
*
38774373 CTTCAACCTGTTCCACTACAACC
66 CTTCAACCTGCTCCACTACAACC
** * * *
38774396 CAGGGAGGCAAGGCTGGTGCCTTCGATCTGCTTCACTGTCGGTACAGGAAGGCAAG
1 CAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAG
38774452 GCTGGTATCT
Statistics
Matches: 854, Mismatches: 76, Indels: 27
0.89 0.08 0.03
Matches are distributed among these distances:
87 135 0.16
88 635 0.74
89 2 0.00
92 2 0.00
93 2 0.00
97 78 0.09
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (88 bp):
CAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTAT
CTTCAACCTGCTCCACTACAACC
Found at i:38774449 original size:44 final size:44
Alignment explanation
Indices: 38774050--38774583 Score: 278
Period size: 44 Copynumber: 12.2 Consensus size: 44
38774040 CAACCCAAGG
** * *
38774050 AGGCAAGGCTGGTATCTTCGATCTGCTTCGTTATCGATGCAGGA
1 AGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGATACAGGA
* ** * * * * * ** *
38774094 AGGCAAGATCTACTATCTTCAACCTGCTCCACT-ACAACCCAGGG
1 AGGCAAG-GCTGGTATCTTCGATCTGCTTCACTGTCGATACAGGA
* * *
38774138 AGGCAAGGTTGGTATCTTCGATCTGCTTCGCTGTCGATGCAGGA
1 AGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGATACAGGA
* * ** * ** * * ** *
38774182 AGGCAAGATCT-GCATCTTTAACCTGCCCCACT-ACAACCCAGGG
1 AGGCAAG-GCTGGTATCTTCGATCTGCTTCACTGTCGATACAGGA
* *
38774225 AGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCGGTACAGGA
1 AGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGATACAGGA
* * * * * * * *
38774269 AGCCAAGATCTGCTATCTTCAACCTGCTCCACT-AC-A-ACCTAGGG
1 AGGCAAG-GCTGGTATCTTCGATCTGCTTCACTGTCGATA-C-AGGA
*
38774313 AGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGATGCAGGA
1 AGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGATACAGGA
* * * * * * ** *
38774357 AGGCAAGATCTGCTATCTTCAACCTG-TTCCACT-ACAACCCAGGG
1 AGGCAAG-GCTGGTATCTTCGATCTGCTT-CACTGTCGATACAGGA
** *
38774401 AGGCAAGGCTGGTGCCTTCGATCTGCTTCACTGTCGGTACAGGA
1 AGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGATACAGGA
* * * *
38774445 AGGCAAGGCTGGTATCTTTGATCTTCTTCGCTGTCAATACAGGA
1 AGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGATACAGGA
* ** * * * * ** *
38774489 AGGCAAGATCTACTATCTTCAACCTGCTTCACT-ACAACCCAGGG
1 AGGCAAG-GCTGGTATCTTCGATCTGCTTCACTGTCGATACAGGA
* * * *
38774533 AGGCAAGGCTGGTATCTTCGATCTGTTTCGCCGTC-AGTATAGGA
1 AGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGA-TACAGGA
38774577 AGGCAAG
1 AGGCAAG
38774584 ATATGTTATT
Statistics
Matches: 346, Mismatches: 126, Indels: 36
0.68 0.25 0.07
Matches are distributed among these distances:
42 3 0.01
43 99 0.29
44 170 0.49
45 74 0.21
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (44 bp):
AGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGATACAGGA
Found at i:38774492 original size:132 final size:132
Alignment explanation
Indices: 38773508--38774583 Score: 446
Period size: 132 Copynumber: 8.1 Consensus size: 132
38773498 CACTACAACC
* * * * ** *
38773508 CAGGGAGGCAAGGCTGGTATCTTCGATCTACTTCGCTTTCGGTACAGGAAGGCAAGATCTGCTAT
1 CAGGAAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCAATACAGGAAGGCAAGATCTACTAT
* * * * *
38773573 CTTCAACCTGCTCCACTACCACCCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGT-TG
66 CTTCAACCTGCTTCACTACAACCCAGGGAGGCAAGGCTGGTACCTTCGATCTGCTTCACCGTCAG
*
38773637 ATG
131 -TA
* * * * * * ** * * **
38773640 CAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACT-ACAACCCAGGGAGGCAAG-GCTGGTA
1 CAGGAAGGCAAG-GCTGGTATCTTCGATCTGCTTCACTGTCAATACAGGAAGGCAAGATCTACTA
* * * * * ** * * * * * * * * *
38773703 TCTTCGATCTGCTTCGCTGTCGATACAGGAAGACAAGATCTGCTATCTTCAACCTCCTCCA-C-T
65 TCTTCAACCTGCTTCACT-ACAACCCAGGGAGGCAAG-GCTGGTACCTTCGATCTGCTTCACCGT
***
38773766 ACAACC
128 -CAGTA
* * * * * * *
38773772 CAGGGAGGCAAGGCTGGTATCTTCGATCCT-CTTCGCTGTCGATGCAGGAAGACAAGATATGCTA
1 CAGGAAGGCAAGGCTGGTATCTTCGAT-CTGCTTCACTGTCAATACAGGAAGGCAAGATCTACTA
* * * * * *
38773836 TCTTTAACCTGCTCCATTACAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTC-
65 TCTTCAACCTGCTTCACTACAACCCAGGGAGGCAAGGCTGGTACCTTCGATCTGCTTCACCGTCA
*
38773900 GATG
130 G-TA
* * * * * * * * * ** * * **
38773904 CAGAAAGGAAAGATCTGCTACCTTCAACCTGCTCCACTAG--GACCCAGGGAGGCAAGGT-TGGT
1 CAGGAAGGCAAG-GCTGGTATCTTCGATCTGCTTCACT-GTCAATACAGGAAGGCAAGATCTACT
* * * * * *** * * * * * *
38773966 ATCTTCGATCTTCTTCGCTATCGATGTAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTA
64 ATCTTCAACCTGCTTCACTA-CAACCCAGGGAGGCAAG-GCTGGTACCTTCGATCTGCT----T-
* ***
38774031 CAACCACTACAACC
122 C-ACC-GT-CAGTA
** * * *
38774045 CAAGG-AGGCAAGGCTGGTATCTTCGATCTGCTTCGTTATCGATGCAGGAAGGCAAGATCTACTA
1 C-AGGAAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCAATACAGGAAGGCAAGATCTACTA
* * * * *
38774109 TCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGTTGGTATCTTCGATCTGCTTCGCTGTC-
65 TCTTCAACCTGCTTCACTACAACCCAGGGAGGCAAGGCTGGTACCTTCGATCTGCTTCACCGTCA
*
38774173 GATG
130 G-TA
* * ** * ** * ** * * ** *
38774177 CAGGAAGGCAAGATCT-GCATCTTTAACCTGCCCCACT-ACAACCCAGGGAGGCAAG-GCTGGTG
1 CAGGAAGGCAAG-GCTGGTATCTTCGATCTGCTTCACTGTCAATACAGGAAGGCAAGATCTACTA
* * * **** * * * * * * * *
38774239 TCTTCGATCTGCTTCACTGTCGGTACAGGAAGCCAAGATCTGCTATCTTCAACCTGCTCCA-C-T
65 TCTTCAACCTGCTTCACT-ACAACCCAGGGAGGCAAG-GCTGGTACCTTCGATCTGCTTCACCGT
38774302 ACA--A
128 -CAGTA
* * * *
38774306 CCTAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGATGCAGGAAGGCAAGATCTGCT
1 -C-AGGAAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCAATACAGGAAGGCAAGATCTACT
* *
38774371 ATCTTCAACCTG-TTCCACTACAACCCAGGGAGGCAAGGCTGGTGCCTTCGATCTGCTTCACTGT
64 ATCTTCAACCTGCTT-CACTACAACCCAGGGAGGCAAGGCTGGTACCTTCGATCTGCTTCACCGT
*
38774435 CGGTA
128 CAGTA
* * *
38774440 CAGGAAGGCAAGGCTGGTATCTTTGATCTTCTTCGCTGTCAATACAGGAAGGCAAGATCTACTAT
1 CAGGAAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCAATACAGGAAGGCAAGATCTACTAT
* * *
38774505 CTTCAACCTGCTTCACTACAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTGTTTCGCCGTCAG
66 CTTCAACCTGCTTCACTACAACCCAGGGAGGCAAGGCTGGTACCTTCGATCTGCTTCACCGTCAG
38774570 TA
131 TA
*
38774572 TAGGAAGGCAAG
1 CAGGAAGGCAAG
38774584 ATATGTTATT
Statistics
Matches: 660, Mismatches: 237, Indels: 94
0.67 0.24 0.09
Matches are distributed among these distances:
130 22 0.03
131 137 0.21
132 300 0.45
133 107 0.16
134 3 0.00
135 1 0.00
136 1 0.00
137 1 0.00
138 1 0.00
139 1 0.00
140 33 0.05
141 34 0.05
142 19 0.03
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (132 bp):
CAGGAAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCAATACAGGAAGGCAAGATCTACTAT
CTTCAACCTGCTTCACTACAACCCAGGGAGGCAAGGCTGGTACCTTCGATCTGCTTCACCGTCAG
TA
Found at i:38774598 original size:88 final size:88
Alignment explanation
Indices: 38774440--38774630 Score: 231
Period size: 88 Copynumber: 2.2 Consensus size: 88
38774430 ACTGTCGGTA
* * *
38774440 CAGGAAGGCAAGGCTGGTATCTTTGATCTTCTTCGCTGTCAATACAGGAAGGCAAGATCTACTAT
1 CAGGAAGGCAAGGCTGGTATCTTCGATCTTCTTCGCCGTCAATACAGGAAGGCAAGATATACTAT
38774505 CTTCAACCTGCTTCACTACAACC
66 CTTCAACCTGCTTCACTACAACC
* * * **
38774528 CAGGGAGGCAAGGCTGGTATCTTCGATCTGT-TTCGCCGTCAGTATAGGAAGGCAAGATATGTTA
1 CAGGAAGGCAAGGCTGGTATCTTCGATCT-TCTTCGCCGTCAATACAGGAAGGCAAGATATACTA
* * * * * *
38774592 TTTTCAACTTGCTCCGCTGCAAAC
65 TCTTCAACCTGCTTCACTACAACC
*
38774616 CAGAAAGGCAAGGCT
1 CAGGAAGGCAAGGCT
38774631 TTGTGATTTC
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
88 85 0.99
89 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (88 bp):
CAGGAAGGCAAGGCTGGTATCTTCGATCTTCTTCGCCGTCAATACAGGAAGGCAAGATATACTAT
CTTCAACCTGCTTCACTACAACC
Found at i:38774624 original size:132 final size:132
Alignment explanation
Indices: 38774356--38774627 Score: 345
Period size: 132 Copynumber: 2.1 Consensus size: 132
38774346 TCGATGCAGG
* *
38774356 AAGGCAAGATCTGCTATCTTCAACCTGTTCCACTACAACCCAGGGAGGCAAGGCTGGTGCCTTCG
1 AAGGCAAGATCTACTATCTTCAACCTGTTCCACTACAACCCAGGGAGGCAAGGCTGGTACCTTCG
* * * * * *
38774421 ATCTGCTTCACTGTCGGTACAGGAAGGCAAGGCTGGTATCTTTGATCTTCTTCGCTGTCAATACA
66 ATCTGCTTCACCGTCAGTACAGGAAGGCAAGGATGGTATCTTTCAACTTCTCCGCTGTCAATACA
*
38774486 GG
131 GA
*
38774488 AAGGCAAGATCTACTATCTTCAACCTGCTT-CACTACAACCCAGGGAGGCAAGGCTGGTATCTTC
1 AAGGCAAGATCTACTATCTTCAACCTG-TTCCACTACAACCCAGGGAGGCAAGGCTGGTACCTTC
* * * * *
38774552 GATCTGTTTCGCCGTCAGTATAGGAAGGCAAGATATGTTAT-TTTCAACTTGCTCCGCTG-CAA-
65 GATCTGCTTCACCGTCAGTACAGGAAGGCAAG-GATGGTATCTTTCAACTT-CTCCGCTGTCAAT
38774614 ACCAGA
128 A-CAGA
38774620 AAGGCAAG
1 AAGGCAAG
38774628 GCTTTGTGAT
Statistics
Matches: 121, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
131 1 0.01
132 106 0.88
133 14 0.12
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (132 bp):
AAGGCAAGATCTACTATCTTCAACCTGTTCCACTACAACCCAGGGAGGCAAGGCTGGTACCTTCG
ATCTGCTTCACCGTCAGTACAGGAAGGCAAGGATGGTATCTTTCAACTTCTCCGCTGTCAATACA
GA
Found at i:38774627 original size:220 final size:219
Alignment explanation
Indices: 38774220--38774630 Score: 572
Period size: 220 Copynumber: 1.9 Consensus size: 219
38774210 CACTACAACC
* * ** *
38774220 CAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCGGTACAGGAAGCCAAGATCTGCTAT
1 CAGGAAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCAATACAGGAAGCCAAGATCTACTAT
* *
38774285 CTTCAACCTGCTCCACTACAACCTAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGA
66 CTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACCGTCGA
* * * **
38774350 TGCAGGAAGGCAAGATCTGCTATCTTCAACCTGTTCCACTACAACCCAGGGAGGCAAGGCTGGTG
131 T-CAGGAAGGCAAGATATGCTATCTTCAACCTGCTCCACTACAAACCAGAAAGGCAAGGCTGGTG
38774415 CCTTCGATCTGCTTCACTGTCGGTA
195 CCTTCGATCTGCTTCACTGTCGGTA
* * * *
38774440 CAGGAAGGCAAGGCTGGTATCTTTGATCTTCTTCGCTGTCAATACAGGAAGGCAAGATCTACTAT
1 CAGGAAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCAATACAGGAAGCCAAGATCTACTAT
* * *
38774505 CTTCAACCTGCTTCACTACAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTGTTTCGCCGTCAG
66 CTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACCGTC-G
* * * * *
38774570 TAT-AGGAAGGCAAGATATGTTATTTTCAACTTGCTCCGCTGCAAACCAGAAAGGCAAGGCT
130 -ATCAGGAAGGCAAGATATGCTATCTTCAACCTGCTCCACTACAAACCAGAAAGGCAAGGCT
38774631 TTGTGATTTC
Statistics
Matches: 165, Mismatches: 24, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
220 162 0.98
221 1 0.01
222 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.26
Consensus pattern (219 bp):
CAGGAAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCAATACAGGAAGCCAAGATCTACTAT
CTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACCGTCGA
TCAGGAAGGCAAGATATGCTATCTTCAACCTGCTCCACTACAAACCAGAAAGGCAAGGCTGGTGC
CTTCGATCTGCTTCACTGTCGGTA
Found at i:38776798 original size:8 final size:8
Alignment explanation
Indices: 38776752--38776777 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
38776742 AATTATTATA
38776752 AATGAAAG
1 AATGAAAG
38776760 AATGAAAG
1 AATGAAAG
38776768 AATGAAAG
1 AATGAAAG
38776776 AA
1 AA
38776778 AATCCAAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.23, T:0.12
Consensus pattern (8 bp):
AATGAAAG
Found at i:38776818 original size:25 final size:21
Alignment explanation
Indices: 38776764--38776824 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 21
38776754 TGAAAGAATG
38776764 AAAGAATGAAAGAA-AATCCA
1 AAAGAATGAAAGAATAATCCA
38776784 AAAGAATGAAAGAATAATTACTCA
1 AAAGAATGAAAGAATAA-T-C-CA
*
38776808 CAAAGAATGAAAAAATA
1 -AAAGAATGAAAGAATA
38776825 TTGGCTCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
20 14 0.40
21 2 0.06
22 1 0.03
23 1 0.03
24 2 0.06
25 15 0.43
ACGTcount: A:0.64, C:0.08, G:0.13, T:0.15
Consensus pattern (21 bp):
AAAGAATGAAAGAATAATCCA
Found at i:38781797 original size:21 final size:21
Alignment explanation
Indices: 38781758--38781811 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
38781748 AATCATATCT
*
38781758 TCCAAGATTG--TATATCATA
1 TCCAAGATTGCATACATCATA
38781777 TCCAAGATTGCATACATCATA
1 TCCAAGATTGCATACATCATA
* *
38781798 TCTAGGATTGCATA
1 TCCAAGATTGCATA
38781812 TCCTTGAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
19 10 0.33
21 20 0.67
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (21 bp):
TCCAAGATTGCATACATCATA
Found at i:38786277 original size:33 final size:33
Alignment explanation
Indices: 38786226--38786384 Score: 125
Period size: 33 Copynumber: 4.7 Consensus size: 33
38786216 TTATCCGTTA
*
38786226 TCGGCGGATTCAGCACTTAGCAACCACCAATGAT
1 TCGG-GGAATCAGCACTTAGCAACCACCAATGAT
*
38786260 TCGAGGAATCAGCACTTAGCAACC-CC-----T
1 TCGGGGAATCAGCACTTAGCAACCACCAATGAT
*
38786287 T-GGGGAAATCAGCACTTAGCAACCCCCTTTATATTCAAGAT
1 TCGGGG-AATCAGCACTTAGCAACCACC---A-A-T---GAT
* *
38786328 ACGGTGGAATCAGCACTTAGCAACCACCAATGAG
1 TCGG-GGAATCAGCACTTAGCAACCACCAATGAT
38786362 TCGGGGAATCAGCACTTAGCAAC
1 TCGGGGAATCAGCACTTAGCAAC
38786385 TCCTTGGGGG
Statistics
Matches: 101, Mismatches: 7, Indels: 35
0.71 0.05 0.24
Matches are distributed among these distances:
26 3 0.03
27 20 0.20
28 2 0.02
32 2 0.02
33 38 0.38
34 8 0.08
37 1 0.01
38 1 0.01
39 1 0.01
41 1 0.01
42 22 0.22
43 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.20
Consensus pattern (33 bp):
TCGGGGAATCAGCACTTAGCAACCACCAATGAT
Found at i:38786411 original size:102 final size:102
Alignment explanation
Indices: 38786235--38786426 Score: 348
Period size: 102 Copynumber: 1.9 Consensus size: 102
38786225 ATCGGCGGAT
*
38786235 TCAGCACTTAGCAACCACCAATGATTCGAGGAATCAGCACTTAGCAACCCCTTGGGGAAATCAGC
1 TCAGCACTTAGCAACCACCAATGAGTCGAGGAATCAGCACTTAGCAACCCCTTGGGGAAATCAGC
38786300 ACTTAGCAACCCCCTTTATATTCAAGATACGGTGGAA
66 ACTTAGCAACCCCCTTTATATTCAAGATACGGTGGAA
* * *
38786337 TCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACTCCTTGGGGGAATCAGC
1 TCAGCACTTAGCAACCACCAATGAGTCGAGGAATCAGCACTTAGCAACCCCTTGGGGAAATCAGC
38786402 ACTTAGCAACCCCCTTTATATTCAA
66 ACTTAGCAACCCCCTTTATATTCAA
38786427 TGGTACCTGG
Statistics
Matches: 86, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
102 86 1.00
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (102 bp):
TCAGCACTTAGCAACCACCAATGAGTCGAGGAATCAGCACTTAGCAACCCCTTGGGGAAATCAGC
ACTTAGCAACCCCCTTTATATTCAAGATACGGTGGAA
Found at i:38795124 original size:35 final size:34
Alignment explanation
Indices: 38795056--38795124 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 34
38795046 GTAAATCTTT
*
38795056 GCAATATCGTTGGCTAACCCAACTAGCGCTGGGC
1 GCAATATCGTTGGCTAACCCAACTAGAGCTGGGC
* *
38795090 GCAATCATCGTTGGTTTAA-CCAACTAGAGTTGGGC
1 GCAAT-ATCGTTGG-CTAACCCAACTAGAGCTGGGC
38795125 TCACTACAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
34 5 0.17
35 22 0.73
36 3 0.10
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (34 bp):
GCAATATCGTTGGCTAACCCAACTAGAGCTGGGC
Found at i:38796472 original size:30 final size:30
Alignment explanation
Indices: 38796436--38796500 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
38796426 GTCTTACTTG
*
38796436 TGTGAGTCACATGGCCTAGCCACATGGCCA
1 TGTGAGTCACACGGCCTAGCCACATGGCCA
* *
38796466 TGTGAGTCACACGGCCTGGCCACATGGCCG
1 TGTGAGTCACACGGCCTAGCCACATGGCCA
38796496 TGTGA
1 TGTGA
38796501 CCCCTATAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (30 bp):
TGTGAGTCACACGGCCTAGCCACATGGCCA
Found at i:38798970 original size:18 final size:18
Alignment explanation
Indices: 38798947--38798981 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
38798937 TTCCAATTTT
*
38798947 TTTTCATTTTCATTTTCC
1 TTTTCATGTTCATTTTCC
*
38798965 TTTTCATGTTCTTTTTC
1 TTTTCATGTTCATTTTC
38798982 ATTCTTTTTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.20, G:0.03, T:0.69
Consensus pattern (18 bp):
TTTTCATGTTCATTTTCC
Found at i:38811714 original size:37 final size:37
Alignment explanation
Indices: 38811664--38811737 Score: 121
Period size: 37 Copynumber: 2.0 Consensus size: 37
38811654 ATAATTTTAC
* *
38811664 AAATTAAGTGACTTAGCACAACTACAATCCCTGTGGA
1 AAATTAAGTGACTTAGCACAAATACAATCCCTATGGA
*
38811701 AAATTAAGTGACTTAGCACAAATATAATCCCTATGGA
1 AAATTAAGTGACTTAGCACAAATACAATCCCTATGGA
38811738 GACGATAACT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.26
Consensus pattern (37 bp):
AAATTAAGTGACTTAGCACAAATACAATCCCTATGGA
Found at i:38815718 original size:18 final size:18
Alignment explanation
Indices: 38815682--38815731 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
38815672 TTTTTTTTCA
* * *
38815682 TTTTCATTTTCCTTTTTT
1 TTTTCTTTTTCATTCTTT
38815700 TTTTCTTTTTCATTCTTT
1 TTTTCTTTTTCATTCTTT
* *
38815718 TTCTCTTGTTCATT
1 TTTTCTTTTTCATT
38815732 TTCTCTCGAC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.06, C:0.18, G:0.02, T:0.74
Consensus pattern (18 bp):
TTTTCTTTTTCATTCTTT
Found at i:38817366 original size:33 final size:33
Alignment explanation
Indices: 38817329--38817391 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
38817319 TAACAGTCTA
* *
38817329 GGCCTGAGCCCTATTCAGTAACAGTACAATGTG
1 GGCCTGAGCCCAATACAGTAACAGTACAATGTG
* *
38817362 GGCCTTAGCCCAATACAGTAACAGTGCAAT
1 GGCCTGAGCCCAATACAGTAACAGTACAAT
38817392 AATGCAACCC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.22
Consensus pattern (33 bp):
GGCCTGAGCCCAATACAGTAACAGTACAATGTG
Found at i:38817737 original size:27 final size:26
Alignment explanation
Indices: 38817709--38818002 Score: 354
Period size: 27 Copynumber: 10.9 Consensus size: 26
38817699 AGGTATAACA
* *
38817709 GTCATTTTACCCTATGGGAGTGTTTCA
1 GTCATTTTACCCTATGGG-GTATTTCG
*
38817736 GTCATTTTACCCTATAGGGGTATTTTG
1 GTCATTTTACCCTAT-GGGGTATTTCG
* *
38817763 ATCATTTTACCCTATGAGGGTATTTCA
1 GTCATTTTACCCTATG-GGGTATTTCG
** *
38817790 GTCATTTTAGTCTACGGAGGTATTTCG
1 GTCATTTTACCCTATGG-GGTATTTCG
* *
38817817 GTCAATTTACCCTACGAGGGTATTTCG
1 GTCATTTTACCCTATG-GGGTATTTCG
38817844 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTCG
*
38817871 ATCATTTTACCCTATGGGTGTATTTCG
1 GTCATTTTACCCTATGGG-GTATTTCG
*
38817898 GTCATTTTACCCTACGAGGGTATTTCG
1 GTCATTTTACCCTATG-GGGTATTTCG
*
38817925 GTTATTTTACCCTACTGGGGTATTTCG
1 GTCATTTTACCCTA-TGGGGTATTTCG
*
38817952 GTCATTTTACCCTATAAGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTCG
*
38817979 ATCATTTTACCCTATAGGGGTATT
1 GTCATTTTACCCTAT-GGGGTATT
38818003 GAGGGGTTTT
Statistics
Matches: 233, Mismatches: 25, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
26 6 0.03
27 219 0.94
28 8 0.03
ACGTcount: A:0.20, C:0.18, G:0.21, T:0.41
Consensus pattern (26 bp):
GTCATTTTACCCTATGGGGTATTTCG
Found at i:38818318 original size:27 final size:27
Alignment explanation
Indices: 38818280--38818332 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
38818270 AAAGGAGTAA
*
38818280 GAGCTAGAGTAGAATTCTTAAGAATTG
1 GAGCTAGAGTAGAATTCTTAAAAATTG
38818307 GAGCTAGAGTAGAATTCTTAAAAATT
1 GAGCTAGAGTAGAATTCTTAAAAATT
38818333 CTAAGTTCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
GAGCTAGAGTAGAATTCTTAAAAATTG
Found at i:38836510 original size:117 final size:116
Alignment explanation
Indices: 38836307--38836667 Score: 433
Period size: 117 Copynumber: 3.1 Consensus size: 116
38836297 CATCAATATG
* * ** * * * *
38836307 ACCGAAGTAAAAAATGTACCCAACACTCATCGACATGTAGTCGAAGTAACCATTTGGCACCCAAT
1 ACCGAAGTAAATATTGCGCCCAACACTCATCGACAAGTCGT-G-AGTAACCATTTGGCACCTAGT
** *
38836372 GCCTCATTAGAACGTCCGAAGTAATTAGTTTGCGCCTAGCGCTCATCGGTATA
64 GCCTCATCGGAACGTCTGAAGTAATTAGTTTGCGCCTAGCGCTCATCGGTATA
* * *
38836425 ACTGAAGTAAATATTGCGCCCAACACTCATCGACACGTCGTTGAGTAACCATTTGACACCTAGTG
1 ACCGAAGTAAATATTGCGCCCAACACTCATCGACAAGTCG-TGAGTAACCATTTGGCACCTAGTG
*
38836490 CCTCATCGGAACGTCTGAAGTAATTAGTTTGCACCTAGCGCTCATCGGTATA
65 CCTCATCGGAACGTCTGAAGTAATTAGTTTGCGCCTAGCGCTCATCGGTATA
* * * * * *
38836542 ACCGAAGTAAAAATTGTGCCTAGCA-TCGA--GACATAGTCG-AAGTAACCATTTGGCAGCTAGT
1 ACCGAAGTAAATATTGCGCCCAACACTC-ATCGACA-AGTCGTGAGTAACCATTTGGCACCTAGT
* * *
38836603 GCCTCATCGGAATGTCTGAAGTAATTAGTTTGCGTCTAGCGCTCATCGATATA
64 GCCTCATCGGAACGTCTGAAGTAATTAGTTTGCGCCTAGCGCTCATCGGTATA
38836656 ACCGAAGTAAAT
1 ACCGAAGTAAAT
38836668 GTTGTGCCTA
Statistics
Matches: 212, Mismatches: 28, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
114 79 0.37
115 4 0.02
116 6 0.03
117 88 0.42
118 34 0.16
119 1 0.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (116 bp):
ACCGAAGTAAATATTGCGCCCAACACTCATCGACAAGTCGTGAGTAACCATTTGGCACCTAGTGC
CTCATCGGAACGTCTGAAGTAATTAGTTTGCGCCTAGCGCTCATCGGTATA
Found at i:38836631 original size:114 final size:115
Alignment explanation
Indices: 38836307--38836684 Score: 447
Period size: 114 Copynumber: 3.3 Consensus size: 115
38836297 CATCAATATG
* * * * * * *
38836307 ACCGAAGTAAAAAATGTACCCAACACTCATCGACATGTAGTCGAAGTAACCATTTGGCACCCAAT
1 ACCGAAGTAAATATTGTGCCTAGCACTCA-CGACA--TAGTCGAAGTAACCATTTGGCACCTAGT
** *
38836372 GCCTCATTAGAACGTCCGAAGTAATTAGTTTGCGCCTAGCGCTCATCGGTATA
63 GCCTCATCGGAACGTCTGAAGTAATTAGTTTGCGCCTAGCGCTCATCGGTATA
* * * * * * *
38836425 ACTGAAGTAAATATTGCGCCCAACACTCATCGACA-CGTCGTTGAGTAACCATTTGACACCTAGT
1 ACCGAAGTAAATATTGTGCCTAGCACTCA-CGACATAGTCG--AAGTAACCATTTGGCACCTAGT
*
38836489 GCCTCATCGGAACGTCTGAAGTAATTAGTTTGCACCTAGCGCTCATCGGTATA
63 GCCTCATCGGAACGTCTGAAGTAATTAGTTTGCGCCTAGCGCTCATCGGTATA
* *
38836542 ACCGAAGTAAAAATTGTGCCTAGCA-TCGA-GACATAGTCGAAGTAACCATTTGGCAGCTAGTGC
1 ACCGAAGTAAATATTGTGCCTAGCACTC-ACGACATAGTCGAAGTAACCATTTGGCACCTAGTGC
* * *
38836605 CTCATCGGAATGTCTGAAGTAATTAGTTTGCGTCTAGCGCTCATCGATATA
65 CTCATCGGAACGTCTGAAGTAATTAGTTTGCGCCTAGCGCTCATCGGTATA
* *
38836656 ACCGAAGTAAATGTTGTGCCTAGTACTCA
1 ACCGAAGTAAATATTGTGCCTAGCACTCA
38836685 TCGGAACGTC
Statistics
Matches: 225, Mismatches: 30, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
114 91 0.40
115 10 0.04
116 6 0.03
117 88 0.39
118 30 0.13
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (115 bp):
ACCGAAGTAAATATTGTGCCTAGCACTCACGACATAGTCGAAGTAACCATTTGGCACCTAGTGCC
TCATCGGAACGTCTGAAGTAATTAGTTTGCGCCTAGCGCTCATCGGTATA
Found at i:38843490 original size:21 final size:21
Alignment explanation
Indices: 38843466--38843505 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
38843456 GAAATTAAAG
*
38843466 TGTTTTACTTTCACTTTAATT
1 TGTTTTAATTTCACTTTAATT
38843487 TGTTTTAATTTCACTTTAA
1 TGTTTTAATTTCACTTTAA
38843506 CTACAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.23, C:0.12, G:0.05, T:0.60
Consensus pattern (21 bp):
TGTTTTAATTTCACTTTAATT
Found at i:38848042 original size:21 final size:22
Alignment explanation
Indices: 38847997--38848042 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
38847987 AGAGAAAAAT
*
38847997 AAAAGTGAAAAAGAAGAAAATG
1 AAAAGTGAAAAAGAAGAAAAGG
**
38848019 AAAA-TGAAAAAGGCGAAAAGG
1 AAAAGTGAAAAAGAAGAAAAGG
38848040 AAA
1 AAA
38848043 GCGAGAGAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.67, C:0.02, G:0.24, T:0.07
Consensus pattern (22 bp):
AAAAGTGAAAAAGAAGAAAAGG
Found at i:38848141 original size:36 final size:33
Alignment explanation
Indices: 38848076--38848142 Score: 89
Period size: 33 Copynumber: 1.9 Consensus size: 33
38848066 GTGAATGAAG
*
38848076 TGAGTGAAAAAGAGAGAGAGCTTAAACAAGGAA
1 TGAGTGAAAAAGAGAGAGAGCTAAAACAAGGAA
*
38848109 TGAGTGAAAAAGAAGAGAGTGCTCAAACACAAGG
1 TGAGTGAAAAAG-AGAGAGAGCT-AAA-ACAAGG
38848143 GAGGAATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 12 0.41
34 9 0.31
35 2 0.07
36 6 0.21
ACGTcount: A:0.49, C:0.09, G:0.30, T:0.12
Consensus pattern (33 bp):
TGAGTGAAAAAGAGAGAGAGCTAAAACAAGGAA
Found at i:38857159 original size:41 final size:40
Alignment explanation
Indices: 38857103--38857357 Score: 253
Period size: 41 Copynumber: 6.3 Consensus size: 40
38857093 TGGTACAAAA
* * *
38857103 GTGC-ATTCATGGGTATCGAAGTACAAATAGGGGCACATAT
1 GTGCAATTCAGGGGTA-CGAAGTACAAACAGGGGCACGTAT
* *
38857143 GTGCAATTCAGGGGTATCAAAGTACTAACAGGGGCACGTAT
1 GTGCAATTCAGGGGTA-CGAAGTACAAACAGGGGCACGTAT
* * *
38857184 GTGCAATTCAGGGGTACCAAAGTACAAACAGGGGAACATAT
1 GTGCAATTCAGGGGTA-CGAAGTACAAACAGGGGCACGTAT
* * * * * *
38857225 ATTCAATTTAGGGGTACTGAAGTACAAAAAGGGACACGCAT
1 GTGCAATTCAGGGGTAC-GAAGTACAAACAGGGGCACGTAT
** * *
38857266 GTGCAATTCAAAGGTGCCGAAGTACAAA-TGGGGCACGTAT
1 GTGCAATTCAGGGGT-ACGAAGTACAAACAGGGGCACGTAT
*
38857306 GTGCAATTCAGTGGTACGGAAGTACAAACAGGGGCACGTAT
1 GTGCAATTCAGGGGTAC-GAAGTACAAACAGGGGCACGTAT
* *
38857347 ATGTAATTCAG
1 GTGCAATTCAG
38857358 CAATATTCTT
Statistics
Matches: 177, Mismatches: 33, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 37 0.21
41 138 0.78
42 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.22
Consensus pattern (40 bp):
GTGCAATTCAGGGGTACGAAGTACAAACAGGGGCACGTAT
Found at i:38857207 original size:82 final size:82
Alignment explanation
Indices: 38857103--38857357 Score: 291
Period size: 82 Copynumber: 3.1 Consensus size: 82
38857093 TGGTACAAAA
* * *
38857103 GTGC-ATTCATGGGTATCGAAGTACAAATAGGGGCACATATGTGCAATTCAGGGGTATC-AAAGT
1 GTGCAATTCAGGGGTACCGAAGTACAAATAGGGGCACATATGTGCAATTCAGGGGTA-CGGAAGT
*
38857166 ACTAACAGGGGCACGTAT
65 ACAAACAGGGGCACGTAT
* * * * * * *
38857184 GTGCAATTCAGGGGTACCAAAGTACAAACAGGGGAACATATATTCAATTTAGGGGTACTGAAGTA
1 GTGCAATTCAGGGGTACCGAAGTACAAATAGGGGCACATATGTGCAATTCAGGGGTACGGAAGTA
* * *
38857249 CAAAAAGGGACACGCAT
66 CAAACAGGGGCACGTAT
** * * *
38857266 GTGCAATTCAAAGGTGCCGAAGTACAAAT-GGGGCACGTATGTGCAATTCAGTGGTACGGAAGTA
1 GTGCAATTCAGGGGTACCGAAGTACAAATAGGGGCACATATGTGCAATTCAGGGGTACGGAAGTA
38857330 CAAACAGGGGCACGTAT
66 CAAACAGGGGCACGTAT
* *
38857347 ATGTAATTCAG
1 GTGCAATTCAG
38857358 CAATATTCTT
Statistics
Matches: 141, Mismatches: 31, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
81 55 0.39
82 86 0.61
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.22
Consensus pattern (82 bp):
GTGCAATTCAGGGGTACCGAAGTACAAATAGGGGCACATATGTGCAATTCAGGGGTACGGAAGTA
CAAACAGGGGCACGTAT
Found at i:38857217 original size:20 final size:20
Alignment explanation
Indices: 38857151--38857217 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
38857141 ATGTGCAATT
* *
38857151 CAGGGGTATCAAAGTACTAA
1 CAGGGGTACCAAAGTACAAA
* ** * * *
38857171 CAGGGGCACGTATGTGCAATT
1 CAGGGGTACCAAAGTACAA-A
38857192 CAGGGGTACCAAAGTACAAA
1 CAGGGGTACCAAAGTACAAA
38857212 CAGGGG
1 CAGGGG
38857218 AACATATATT
Statistics
Matches: 32, Mismatches: 14, Indels: 2
0.67 0.29 0.04
Matches are distributed among these distances:
20 18 0.56
21 14 0.44
ACGTcount: A:0.34, C:0.18, G:0.31, T:0.16
Consensus pattern (20 bp):
CAGGGGTACCAAAGTACAAA
Found at i:38857331 original size:122 final size:123
Alignment explanation
Indices: 38857120--38857348 Score: 309
Period size: 122 Copynumber: 1.9 Consensus size: 123
38857110 CATGGGTATC
* * * ** *
38857120 GAAGTACAAATAGGGGCACATATGTGCAATTCAGGGGTATCAAAGTACTAACAGGGGCACGTATG
1 GAAGTACAAAAAGGGACACACATGTGCAATTCAAAGGTACCAAAGTACTAACAGGGGCACGTATG
38857185 TGCAATTCAGGGGTACCAAAGTACAAACAGGGGAACATATATTCAATTTAGGGGTACT
66 TGCAATTCAGGGGTACCAAAGTACAAACAGGGGAACATATATTCAATTTAGGGGTACT
* * *
38857243 GAAGTACAAAAAGGGACACGCATGTGCAATTCAAAGGTGCCGAAGTAC-AA-ATGGGGCACGTAT
1 GAAGTACAAAAAGGGACACACATGTGCAATTCAAAGGTACCAAAGTACTAACA-GGGGCACGTAT
* ** * *
38857306 GTGCAATTCAGTGGTACGGAAGTACAAACAGGGGCACGTATAT
65 GTGCAATTCAGGGGTACCAAAGTACAAACAGGGGAACATATAT
38857349 GTAATTCAGC
Statistics
Matches: 91, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
121 1 0.01
122 51 0.56
123 39 0.43
ACGTcount: A:0.36, C:0.16, G:0.28, T:0.20
Consensus pattern (123 bp):
GAAGTACAAAAAGGGACACACATGTGCAATTCAAAGGTACCAAAGTACTAACAGGGGCACGTATG
TGCAATTCAGGGGTACCAAAGTACAAACAGGGGAACATATATTCAATTTAGGGGTACT
Found at i:38858888 original size:21 final size:21
Alignment explanation
Indices: 38858851--38858890 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
38858841 AATATTTAAT
*
38858851 TTCTATTCAAAATAAGTTTTA
1 TTCTATTCAAAAAAAGTTTTA
38858872 TTCT-TTCAAAACAAAGTTT
1 TTCTATTCAAAA-AAAGTTT
38858891 AAAATTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.38, C:0.12, G:0.05, T:0.45
Consensus pattern (21 bp):
TTCTATTCAAAAAAAGTTTTA
Found at i:38862985 original size:80 final size:78
Alignment explanation
Indices: 38862742--38863021 Score: 463
Period size: 78 Copynumber: 3.6 Consensus size: 78
38862732 AACTAATAGT
* *
38862742 GGATAATATATGTATATACATGTATAAGTTCTTGAATTTAGTTAAAAGTATGTATGTTATATTTA
1 GGAT-ATATATGTATATACATGAATAAATTCTTGAATTTAGTTAAAAGTATGTATGTTATATTTA
*
38862807 TATATATAAGGTTC
65 TATATATAAAGTTC
*
38862821 GGATATATATGTATATTCATGAATAAATTCTTGAATTTAGTTAAAAGTATGTATGTTATATTTAT
1 GGATATATATGTATATACATGAATAAATTCTTGAATTTAGTTAAAAGTATGTATGTTATATTTAT
38862886 ATATATAAAGTTC
66 ATATATAAAGTTC
38862899 GGATATATATGTATATACATGAATAAATTCTTGAATTTAGTTAAAAGTATGTATGTTATATTTAT
1 GGATATATATGTATATACATGAATAAATTCTTGAATTTAGTTAAAAGTATGTATGTTATA-TT-T
38862964 ATATATATAAAGTTC
64 ATATATATAAAGTTC
* * *
38862979 GGATATATGTGTATATACATGAATAAGTT-TTGAATTTATTTAA
1 GGATATATATGTATATACATGAATAAATTCTTGAATTTAGTTAA
38863022 TGTTGAATGT
Statistics
Matches: 191, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
78 129 0.68
79 19 0.10
80 43 0.23
ACGTcount: A:0.38, C:0.04, G:0.14, T:0.44
Consensus pattern (78 bp):
GGATATATATGTATATACATGAATAAATTCTTGAATTTAGTTAAAAGTATGTATGTTATATTTAT
ATATATAAAGTTC
Found at i:38863784 original size:83 final size:82
Alignment explanation
Indices: 38863697--38863931 Score: 238
Period size: 82 Copynumber: 2.9 Consensus size: 82
38863687 TATTTCAGAC
* * * * *
38863697 TATAAGTCTAGCAGGCTAAAAGTCGGTG-TACCAAATCAGGTTTTAAAACCTAGCAGGCTAAGTG
1 TATAAGCCTAGCAGGCTAAAAGCCGGTGAT-CCAAATCAGGCTAT-AAACCTAGCAGGATAAGTG
*
38863761 CCGGTGATCTAAACCAGGT
64 CCAGTGATCTAAACCAGGT
** ** *
38863780 TATAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAGGATAAGTGCC
1 TATAAGCCTAGCAGGCTAAAAGCCGGTGATCCAAATCAGGCTATAAACCTAGCAGGATAAGTGCC
**
38863845 AGTGATCTAAATTAGGT
66 AGTGATCTAAACCAGGT
** ** ** * * * *
38863862 TATAAGCCTAGCAGGCTAAGTGCTAGTGATCTGAATCAGGCTTTAAGCCTAACAGGCTAAGTGCC
1 TATAAGCCTAGCAGGCTAAAAGCCGGTGATCCAAATCAGGCTATAAACCTAGCAGGATAAGTGCC
38863927 AGTGA
66 AGTGA
38863932 ATCTGTTTAA
Statistics
Matches: 133, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
82 98 0.74
83 34 0.26
84 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (82 bp):
TATAAGCCTAGCAGGCTAAAAGCCGGTGATCCAAATCAGGCTATAAACCTAGCAGGATAAGTGCC
AGTGATCTAAACCAGGT
Found at i:38863799 original size:41 final size:41
Alignment explanation
Indices: 38863729--38863931 Score: 273
Period size: 41 Copynumber: 4.9 Consensus size: 41
38863719 TCGGTGTACC
* * *
38863729 AAATCAGGTTTTAAAACCTAGCAGGCTAAGTGCCGGTGATCT
1 AAATCAGGTTAT-AAGCCTAGCAGGCTAAGTGCCAGTGATCT
* *
38863771 AAACCAGGTTATAAGCCTAGCAGGCTAAGTGCCGGTGATCT
1 AAATCAGGTTATAAGCCTAGCAGGCTAAGTGCCAGTGATCT
* * *
38863812 GAATCAGGCTATAAGCCTAGCAGGATAAGTGCCAGTGATCT
1 AAATCAGGTTATAAGCCTAGCAGGCTAAGTGCCAGTGATCT
* *
38863853 AAATTAGGTTATAAGCCTAGCAGGCTAAGTGCTAGTGATCT
1 AAATCAGGTTATAAGCCTAGCAGGCTAAGTGCCAGTGATCT
* *
38863894 GAATCAGGCTT-TAAGCCTAACAGGCTAAGTGCCAGTGA
1 AAATCAGG-TTATAAGCCTAGCAGGCTAAGTGCCAGTGA
38863932 ATCTGTTTAA
Statistics
Matches: 143, Mismatches: 17, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
41 131 0.92
42 12 0.08
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (41 bp):
AAATCAGGTTATAAGCCTAGCAGGCTAAGTGCCAGTGATCT
Found at i:38863862 original size:82 final size:82
Alignment explanation
Indices: 38863745--38863931 Score: 302
Period size: 82 Copynumber: 2.3 Consensus size: 82
38863735 GGTTTTAAAA
* *
38863745 CCTAGCAGGCTAAGTGCCGGTGATCTAAACCAGGTTATAAGCCTAGCAGGCTAAGTGCCGGTGAT
1 CCTAGCAGGCTAAGTGCCAGTGATCTAAACCAGGTTATAAGCCTAGCAGGCTAAGTGCCAGTGAT
38863810 CTGAATCAGGCTATAAG
66 CTGAATCAGGCTATAAG
* ** *
38863827 CCTAGCAGGATAAGTGCCAGTGATCTAAATTAGGTTATAAGCCTAGCAGGCTAAGTGCTAGTGAT
1 CCTAGCAGGCTAAGTGCCAGTGATCTAAACCAGGTTATAAGCCTAGCAGGCTAAGTGCCAGTGAT
*
38863892 CTGAATCAGGCTTTAAG
66 CTGAATCAGGCTATAAG
*
38863909 CCTAACAGGCTAAGTGCCAGTGA
1 CCTAGCAGGCTAAGTGCCAGTGA
38863932 ATCTGTTTAA
Statistics
Matches: 96, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
82 96 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (82 bp):
CCTAGCAGGCTAAGTGCCAGTGATCTAAACCAGGTTATAAGCCTAGCAGGCTAAGTGCCAGTGAT
CTGAATCAGGCTATAAG
Found at i:38864148 original size:36 final size:36
Alignment explanation
Indices: 38864107--38864220 Score: 108
Period size: 34 Copynumber: 3.2 Consensus size: 36
38864097 TGGATATATA
*
38864107 TATATATGTATGCATTTGGCATATGTGGATT-ATAAG
1 TATATATGTATGCATTTGGCATATGT-AATTGATAAG
* * *
38864143 TATATATG--TGCATTCGACACATGTAATTGATAAG
1 TATATATGTATGCATTTGGCATATGTAATTGATAAG
* * * * *
38864177 TATAAATATATGCTTTTGGCATATGTATTTGAATAAT
1 TATATATGTATGCATTTGGCATATGTAATTG-ATAAG
38864214 TATATAT
1 TATATAT
38864221 ATAACTGTAT
Statistics
Matches: 61, Mismatches: 13, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
33 3 0.05
34 24 0.39
36 24 0.39
37 10 0.16
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.42
Consensus pattern (36 bp):
TATATATGTATGCATTTGGCATATGTAATTGATAAG
Found at i:38864155 original size:34 final size:34
Alignment explanation
Indices: 38864107--38864220 Score: 95
Period size: 36 Copynumber: 3.2 Consensus size: 34
38864097 TGGATATATA
*
38864107 TATATATGTATGCATTTGGCATATGTGGATT-ATAAG
1 TATATATG--TGCATTTGGCATATGT-AATTGATAAG
* * *
38864143 TATATATGTGCATTCGACACATGTAATTGATAAG
1 TATATATGTGCATTTGGCATATGTAATTGATAAG
* * * *
38864177 TATAAATATATGCTTTTGGCATATGTATTTGAATAAT
1 TAT--ATATGTGCATTTGGCATATGTAATTG-ATAAG
38864214 TATATAT
1 TATATAT
38864221 ATAACTGTAT
Statistics
Matches: 63, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
33 3 0.05
34 21 0.33
35 4 0.06
36 28 0.44
37 7 0.11
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.42
Consensus pattern (34 bp):
TATATATGTGCATTTGGCATATGTAATTGATAAG
Found at i:38866182 original size:25 final size:25
Alignment explanation
Indices: 38866145--38866198 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
38866135 TGAACCTCTG
38866145 ACCTCCTTACCACACCTGTGACACC
1 ACCTCCTTACCACACCTGTGACACC
* * *
38866170 ACCTCCTTGCCACACCTGTGTCGCC
1 ACCTCCTTACCACACCTGTGACACC
38866195 ACCT
1 ACCT
38866199 TGCCACTACA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.19, C:0.48, G:0.11, T:0.22
Consensus pattern (25 bp):
ACCTCCTTACCACACCTGTGACACC
Found at i:38869756 original size:67 final size:66
Alignment explanation
Indices: 38869663--38869893 Score: 262
Period size: 67 Copynumber: 3.5 Consensus size: 66
38869653 TTTAATAAAT
*
38869663 TTAATATTAAATTAAAATTAATATTTATCTTGATAATATTTATTAATTTAATATTAAAGTGATTA
1 TTAATATTAAATTAAATTTAATATTTATCTT-ATAATATTTATTAATTTAATATTAAAGTGATTA
38869728 CC
65 CC
* ** *
38869730 TTAATATTAAATTAAATTTAAAATTTATCTTATAGATAAATATT-CTATTAAT-TT-AA-TAGA-
1 TTAATATTAAATTAAATTTAATATTTATCTTATA-ATATTTATTAAT-TTAATATTAAAGT-GAT
38869790 T---
63 TACC
* * *
38869791 TTAATATTAAATTTAATCTAATACTTATTCTTATAAGTATCTTATTAATTTAATATTAAAGTGAT
1 TTAATATTAAATTAAATTTAATATTTA-TCTTATAA-TAT-TTATTAATTTAATATTAAAGTGAT
*
38869856 CACC
63 TACC
38869860 TTAATATTAAATTAAATTTAATATTTATCTTATA
1 TTAATATTAAATTAAATTTAATATTTATCTTATA
38869894 TATAAATATT
Statistics
Matches: 134, Mismatches: 16, Indels: 27
0.76 0.09 0.15
Matches are distributed among these distances:
61 24 0.18
62 9 0.07
63 9 0.07
64 5 0.04
65 8 0.06
66 7 0.05
67 41 0.31
68 7 0.05
69 24 0.18
ACGTcount: A:0.43, C:0.06, G:0.03, T:0.48
Consensus pattern (66 bp):
TTAATATTAAATTAAATTTAATATTTATCTTATAATATTTATTAATTTAATATTAAAGTGATTAC
C
Found at i:38869861 original size:130 final size:127
Alignment explanation
Indices: 38869647--38869981 Score: 480
Period size: 130 Copynumber: 2.6 Consensus size: 127
38869637 CCAAAAATAA
* * * *
38869647 TATTATTTTAATAAATTTAATATTAAATTAAAATTAATATTTATCTTGATAA-TATTTATTAATT
1 TATTAATTTAATAGATTTAATATTAAATT-TAATTAATACTTATCTT-ATAAGTATTTATTAATT
*
38869711 TAATATTAAAGTGATTACCTTAATATTAAATTAAATTTAAAATTTATCTTATAGATAAATATTC
64 TAATATTAAAGTGATCACCTTAATATTAAATTAAATTTAAAATTTATCTTATAGATAAATATTC
38869775 TATTAATTTAATAGATTTAATATTAAATTTAATCTAATACTTATTCTTATAAGTATCTTATTAAT
1 TATTAATTTAATAGATTTAATATTAAATTTAAT-TAATACTTA-TCTTATAAGTAT-TTATTAAT
* *
38869840 TTAATATTAAAGTGATCACCTTAATATTAAATTAAATTTAATATTTATCTTATATATAAATATTC
63 TTAATATTAAAGTGATCACCTTAATATTAAATTAAATTTAAAATTTATCTTATAGATAAATATTC
* * * *
38869905 TATTAATTTAATAGAATTAATATT-AATTTAATATAATACTTA--TAATAAGCATTAGATTAATT
1 TATTAATTTAATAGATTTAATATTAAATTTAAT-TAATACTTATCTTATAAGTATT-TATTAATT
38869967 TAATATTAAAGTGAT
64 TAATATTAAAGTGAT
38869982 TAAGTTTGAT
Statistics
Matches: 190, Mismatches: 12, Indels: 12
0.89 0.06 0.06
Matches are distributed among these distances:
125 1 0.01
126 30 0.16
127 3 0.02
128 39 0.21
129 24 0.13
130 93 0.49
ACGTcount: A:0.44, C:0.05, G:0.04, T:0.47
Consensus pattern (127 bp):
TATTAATTTAATAGATTTAATATTAAATTTAATTAATACTTATCTTATAAGTATTTATTAATTTA
ATATTAAAGTGATCACCTTAATATTAAATTAAATTTAAAATTTATCTTATAGATAAATATTC
Found at i:38869926 original size:61 final size:60
Alignment explanation
Indices: 38869647--38869935 Score: 210
Period size: 67 Copynumber: 4.5 Consensus size: 60
38869637 CCAAAAATAA
* * * **
38869647 TATTATTTTAATA-AATTTAATATTAAATTAAAATTAATATTTATCTTGATAATATTTATT
1 TATTAATTTAATAGAACTTAATATTAAATTAAATTTAATATTTATCTT-ATAATAAATATT
* *
38869707 AATTTAATATTAA-AGTGATTACCTTAATATTAAATTAAATTTAAAATTTATCTTATAGATAAAT
1 TA-TTAAT-TTAATA--GA--A-CTTAATATTAAATTAAATTTAATATTTATCTTATA-ATAAAT
38869771 ATT
58 ATT
* * * * **
38869774 CTATTAATTTAATAG-ATTTAATATTAAATTTAATCTAATACTTATTCTTATAAGTATCTTATT
1 -TATTAATTTAATAGAACTTAATATTAAATTAAATTTAATATTTA-TCTTATAA-TA-AATATT
*
38869837 AATTTAATATTAA-AGTGATCACCTTAATATTAAATTAAATTTAATATTTATCTTATATATAAAT
1 TA-TTAAT-TTAATA--GA--A-CTTAATATTAAATTAAATTTAATATTTATCTTATA-ATAAAT
38869901 ATT
58 ATT
*
38869904 CTATTAATTTAATAGAA-TTAATATTAATTTAA
1 -TATTAATTTAATAGAACTTAATATTAAATTAA
38869936 TATAATACTT
Statistics
Matches: 180, Mismatches: 24, Indels: 49
0.71 0.09 0.19
Matches are distributed among these distances:
60 1 0.01
61 43 0.24
62 15 0.08
63 11 0.06
64 5 0.03
65 4 0.02
66 12 0.07
67 52 0.29
68 12 0.07
69 25 0.14
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.48
Consensus pattern (60 bp):
TATTAATTTAATAGAACTTAATATTAAATTAAATTTAATATTTATCTTATAATAAATATT
Found at i:38875934 original size:57 final size:57
Alignment explanation
Indices: 38875866--38875983 Score: 236
Period size: 57 Copynumber: 2.1 Consensus size: 57
38875856 TGTGAAGTGA
38875866 TAAATTATGTCTCATGTTGATCATATTTTGTATGGTAATGTTTTGTGTACTTGTCTT
1 TAAATTATGTCTCATGTTGATCATATTTTGTATGGTAATGTTTTGTGTACTTGTCTT
38875923 TAAATTATGTCTCATGTTGATCATATTTTGTATGGTAATGTTTTGTGTACTTGTCTT
1 TAAATTATGTCTCATGTTGATCATATTTTGTATGGTAATGTTTTGTGTACTTGTCTT
38875980 TAAA
1 TAAA
38875984 CTTTGTTTTG
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.23, C:0.08, G:0.17, T:0.52
Consensus pattern (57 bp):
TAAATTATGTCTCATGTTGATCATATTTTGTATGGTAATGTTTTGTGTACTTGTCTT
Found at i:38876080 original size:21 final size:22
Alignment explanation
Indices: 38876054--38876097 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
38876044 AAAGTCAAAA
38876054 TGGTCATGATTGATTTGC-TTT
1 TGGTCATGATTGATTTGCATTT
* *
38876075 TGGTCATGTTTGGTTTGCATTT
1 TGGTCATGATTGATTTGCATTT
38876097 T
1 T
38876098 TGTTTGTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.11, C:0.09, G:0.25, T:0.55
Consensus pattern (22 bp):
TGGTCATGATTGATTTGCATTT
Found at i:38877771 original size:22 final size:22
Alignment explanation
Indices: 38877743--38877798 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
38877733 TCTGCTCTTT
* *
38877743 ATGTTGCGAGATCGAACCCCCC
1 ATGTTGCGACATCAAACCCCCC
38877765 ATGTTGCGACATCAAACCCCCC
1 ATGTTGCGACATCAAACCCCCC
*
38877787 ATGTTGTGACAT
1 ATGTTGCGACAT
38877799 AATTTTCAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (22 bp):
ATGTTGCGACATCAAACCCCCC
Found at i:38882983 original size:80 final size:79
Alignment explanation
Indices: 38882851--38883011 Score: 304
Period size: 80 Copynumber: 2.0 Consensus size: 79
38882841 TCATAGACTC
38882851 CTTCATAAATATCTTTTTATAATCAAAGTGTTCATGGGAACACATATAGTCAAAGTTATCCATGG
1 CTTCATAAATATCTTTTTATAATCAAAGTGTTCATGGGAACACATATAGTCAAAGTTATCCATGG
38882916 CTTGTGCTGACTGA
66 CTTGTGCTGACTGA
38882930 CTTCATAAATATCTTTGTTATAATCAAAGTGTTCATGGGAACACATATAGTCAAAGTTATCCATG
1 CTTCATAAATATCTTT-TTATAATCAAAGTGTTCATGGGAACACATATAGTCAAAGTTATCCATG
*
38882995 GCTTGTGTTGACTGA
65 GCTTGTGCTGACTGA
38883010 CT
1 CT
38883012 ATTTTTTTGA
Statistics
Matches: 80, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
79 16 0.20
80 64 0.80
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (79 bp):
CTTCATAAATATCTTTTTATAATCAAAGTGTTCATGGGAACACATATAGTCAAAGTTATCCATGG
CTTGTGCTGACTGA
Found at i:38888630 original size:21 final size:22
Alignment explanation
Indices: 38888604--38888647 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
38888594 AAAGTGATAA
38888604 TGGTCATGATTGATTTGC-TTT
1 TGGTCATGATTGATTTGCATTT
* *
38888625 TGGTCATGTTTGGTTTGCATTT
1 TGGTCATGATTGATTTGCATTT
38888647 T
1 T
38888648 TGTTTGTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.11, C:0.09, G:0.25, T:0.55
Consensus pattern (22 bp):
TGGTCATGATTGATTTGCATTT
Found at i:38891496 original size:25 final size:26
Alignment explanation
Indices: 38891447--38891496 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
38891437 GGTTAAGGTT
* *
38891447 TCTTTTCTTTTTTAGTTTAGGTTTTC
1 TCTTTTCTTTTTTAGATTAGATTTTC
*
38891473 TCTTTTC-TTTTTAGATTATATTTT
1 TCTTTTCTTTTTTAGATTAGATTTT
38891497 AGTTTTGTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.12, C:0.10, G:0.08, T:0.70
Consensus pattern (26 bp):
TCTTTTCTTTTTTAGATTAGATTTTC
Found at i:38900904 original size:18 final size:19
Alignment explanation
Indices: 38900876--38900923 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
38900866 TTATACTACA
* *
38900876 AAAATAAATATGCGTATA-T
1 AAAA-AAATATACATATATT
38900895 AAAAAAATATACATATATTT
1 AAAAAAATATACATATA-TT
38900915 AAAAAAATA
1 AAAAAAATA
38900924 ATTAAATATG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 11 0.44
19 4 0.16
20 10 0.40
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.29
Consensus pattern (19 bp):
AAAAAAATATACATATATT
Found at i:38902637 original size:132 final size:132
Alignment explanation
Indices: 38902539--38906911 Score: 6286
Period size: 132 Copynumber: 33.1 Consensus size: 132
38902529 TGCTGCAACT
* *
38902539 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCA
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
* * *
38902604 TCTTCGATCTACTCCACTACTACTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTACT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
38902669 GC
131 GC
* *
38902671 TCAGAGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
* *
38902736 TCTTCGATCTGCTCCACTTCTGCTTAAGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
38902801 GC
131 GC
* *
38902803 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTTCCC-CTATCATGGAAAGATAAGATTTGTC
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGC-TTCCCACTATCTTGGAAAGATAAGATTTGTC
* * * *
38902867 GTCTTCGATCAGCTCCACTACTACTTAGGGAGATAAGATCTACAATTTTCAACCCACTCTGCTAC
65 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGC
38902932 TGC
130 TGC
* *
38902935 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCGCACTATCTTGGAAAGATAAGATTTGTTG
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
* * * * * * * *
38903000 TCTTCGATCTGTTCTACTACTGCTAAGGGAGATAACATCAACAATTTTCAACCAACTCTGCAGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
38903065 GC
131 GC
* * ** * * * *
38903067 TCAAGGAGACAATGCTTGGTGACCGAAATCTACTTCCCATTATCTTGGAAAAATAAGATTT-ACT
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTC-
* * * *
38903131 GTCTTCGATCTGCTCCACTACAGCTTAGGGAGATAAGATCTAAAATTTTCAACCTACTCCGCTAC
65 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGC
38903196 TGC
130 TGC
* * *
38903199 TCAGAGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGTCG
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
* * *
38903264 TCTTCGATCTGCTCCACTACTGCTTAGTGAGATAAGATTTACAATTTTCGACCCACTCCGCTGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
38903329 GC
131 GC
* * * * * *
38903331 TTAAGGAGACAAGGGTTGGTGACTTAAATATGCTTCCCACTATCATGGAAAGATAAGATTTGCCG
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
* *
38903396 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCAACAATTTTCAACCCACTTCGCTGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
38903461 GC
131 GC
* * * * * *
38903463 TAAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATATTTGAAAGATAAGACTTGCCG
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
* *
38903528 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTAAAATTTTCAACCCACTACGCTGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
38903593 GC
131 GC
* *
38903595 TCAGGGAGACAAGGCTTGGT-AGCTTAAATCTGCTTCCCACTATCTTGGAAAGTTAAGATTTGTT
1 TCAGGGAGACAAGGCTTGGTGA-CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTC
**
38903659 GTCTTCGATCTGCTCCACTACAACTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGC
65 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGC
38903724 TGC
130 TGC
* * * *
38903727 TCAGTGAGACAATGCTTGGTGACTTAAATCTGCTTCCTACTATCTTGGAAAGATAAGATTTGTTG
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
* *
38903792 TCTTCGATCTGCTCCACAACTGCTTAGGGAGATAAAATCTACAATTTTCAACCCACTCCGCTGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
38903857 GC
131 GC
*
38903859 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAGGATAAGATTTG-CT
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTC-
* * * * *
38903923 GTCTTCGATCTGTTCCACTTCTACTTAGGAAGATAAGATCTATAATTTTCAACCCACTCCGCTGC
65 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGC
38903988 TGC
130 TGC
* * * *
38903991 TCAGGGAGACAAGGCTTGGTCACTCAAATCAGCTTCCCACTATCTTGGAAAGATAAGATTTGTAG
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
* * *
38904056 TCTTCGATATGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACTCACTCTGCTGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
38904121 GC
131 GC
* * * * * *
38904123 TCAGGGAGAC-AGTGCTTGGTGACATAATTCTGCTTCCCACTATCTTCGAAATATAAGATTTTTT
1 TCAGGGAGACAAG-GCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTC
* * *
38904187 GTCTTCGATCTGCTCCACAACTGCTTAGGGACATAAGAACTACAATTTTCAACCCACTCCGCTGC
65 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGC
38904252 TGC
130 TGC
* * * * *
38904255 TCAGGGAGACAAGGATTGGTGGCTTAAATCTACTTCCCCCTATATTGGAAAGATAAGATTTGTCG
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
* *
38904320 TCTTCGATCTGCTCCACTACTACTTAGGGACATAAGATCTACAATTTTCAACCCACTCCGCTGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
38904385 GC
131 GC
* * * * *
38904387 TCAAGGAGACAAGCCTTGGTGACTTAAATCTGCTTCCCACTAGCTTGGAAAGATAAGATATGCCG
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
* ** **
38904452 CCTTTAATCTGCTCCACTACTGCTTATTGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
38904517 GC
131 GC
* * * * *
38904519 TGAGGGAGACAAGGCTTGGTGACTTAAATCTGCTACCCACTA-CTTGGAAGGAAAAGATTTGCCG
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
38904583 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
38904648 GC
131 GC
* * * ** * *
38904650 TCAGGGAGACAAGGCTTGGTGGCTTAAATTTGCTTCCCACTATCCTGGAAAGAGCAGATTAGCCG
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
* * *
38904715 ACTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACACACTCCGCTACT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
38904780 GC
131 GC
* *
38904782 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCGCACTATCTTGGAAAGATAAGATTTGTTG
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
* * * * * * ** *
38904847 TCTTCGATCTGTTCTACTACTGCTAAGGGAGATAACATCAACAATTTTCAACCCATTATGCAGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
38904912 GC
131 GC
* ** * * * * *
38904914 TCAGGGAGACAATGCTTGGTGACCGAAATCTGCTTCCCATTATCTTAGAAAAATAAGAATATGCC
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAG-ATTTGTC
* * *
38904979 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTAAAATTTTCAACCTACTCCGCTAC
65 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGC
38905044 TGC
130 TGC
* * * * *
38905047 TCAGAGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATATTGGAAAGATAAGACTTGCCG
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
* * *
38905112 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAATATCTAAAATTTTCAACCCACTACGCTGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
38905177 GC
131 GC
* * * *
38905179 TCAGAGAGACAAGGCTTGGCGGCTTAAATCTGCTTTCCC-CTATCTTGGAAAGATAATATTTGTC
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGC-TTCCCACTATCTTGGAAAGATAAGATTTGTC
* * *
38905243 GTCGTCGATCAGCTCCACTACTGCTTAGGGAAATAAGATCTACAATTTTCAACCCACTCCGCTGC
65 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGC
38905308 TGC
130 TGC
* *
38905311 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACAATCTTGGAAAGATAAGATTTGTCG
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
38905376 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
38905441 GC
131 GC
* * * *
38905443 TCAGTGAGACAATGCTTGGTGACTTAAATCTGCTTCCTACTATCTTGGAAAGATAAGATTTGTTG
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
* *
38905508 TCTTCGATCTGCTCCACAACTGCTTAGGGAGATAAAATCTACAATTTTCAACCCACTCCGCTGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
38905573 GC
131 GC
*
38905575 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAGGATAAGATTTG-CT
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTC-
* * * * *
38905639 GTCTTCGATCTGTTCCACTTCTACTTAGGAAGATAAGATCTATAATTTTCAACCCACTCCGCTGC
65 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGC
*
38905704 TAC
130 TGC
* * * *
38905707 TCAGGGAGACAAGGCTTGGTCACTCAAATCAGCTTCCCACTATCTTGGAAAGATAAGATTTGTAG
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
* * *
38905772 TCTTCGATATGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACTCACTCTGCTGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
38905837 GC
131 GC
* * * * * *
38905839 TCAGGGAGAC-AGTGCTTGGTGACATAATTCTGCTTCCCACTATCTTCGAAATATAAGATTTTTT
1 TCAGGGAGACAAG-GCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTC
* * * *
38905903 GTCTTCGATCTGCTCCACAACTGCTTAGGAACATAAGAACTACAATTTTCAACCCACTCCGCTGC
65 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGC
38905968 TGC
130 TGC
* * * *
38905971 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTACTTCCCCCTATATTGGAAAGATAAGATTTGTCG
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
* *
38906036 TCTTCGATCTGCTCCACTACTACTTAGGGACATAAGATCTACAATTTTCAACCCACTCCGCTGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
38906101 GC
131 GC
* * * * *
38906103 TCAAGGAGACAAGCCTTGGTGACTTAAATCTGCTTCCCACTAGCTTGGAAAGATAAGATATGCCG
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
* ** **
38906168 CCTTTAATCTGCTCCACTACTGCTTATTGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
38906233 GC
131 GC
* * * * *
38906235 TGAGGGAGACAAGGCTTGGTGACTTAAATCTGCTACCCACTA-CTTGGAAGGAAAAGATTTGCCG
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
38906299 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
38906364 GC
131 GC
* * * ** * *
38906366 TCAGGGAGACAAGGCTTGGTGGCTTAAATTTGCTTCCCACTATCCTGGAAAGAGCAGATTAGCCG
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
* **
38906431 ACTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCCACT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
38906496 GC
131 GC
* *
38906498 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCGCACTATCTTGGAAAGATAAGATTTGTTG
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
* * * * * * ** *
38906563 TCTTCGATCTGTTCTACTACTGCTAAGGGAGATAACATCAACAATTTTCAACCCATTATGCAGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
38906628 GC
131 GC
* ** * * * * *
38906630 TCAGGGAGACAATGCTTGGTGACCGAAATCTGCTTCCCATTATCTTAGAAAAATAAGAATATGCC
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAG-ATTTGTC
* * * *
38906695 GTCTTCGATCTGTTCCACTACTGCTTAGGGAGATAAGATCTAAAATTTTCAACCTACTCCGCTAC
65 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGC
38906760 TGC
130 TGC
* *
38906763 TCAGAGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
1 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
* * *
38906828 TCTT-GATCTGCTCCATTACTACTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGTTGCT
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
38906892 G-
131 GC
* * *
38906893 TAAGGGGGACAATGCTTGG
1 TCAGGGAGACAAGGCTTGG
38906912 AAAGATAAGA
Statistics
Matches: 3769, Mismatches: 452, Indels: 42
0.88 0.11 0.01
Matches are distributed among these distances:
130 15 0.00
131 305 0.08
132 3215 0.85
133 234 0.06
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.30
Consensus pattern (132 bp):
TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCT
GC
Found at i:38903430 original size:44 final size:44
Alignment explanation
Indices: 38903249--38903433 Score: 115
Period size: 44 Copynumber: 4.2 Consensus size: 44
38903239 TATCTTGAAA
* *
38903249 AGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGTG
1 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
* ** * * ** * * *
38903293 AGATAAGATTTACAATTTTCGACCCACTCCGCTGCTGCTTAAGG
1 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
* ** ** * ** * * *
38903337 AGACAAGGGTTGGTGACTTAAATATGCTTCCCACTA-T-CAT-GGAA
1 AGATAAGATTTGCCGTCTTCGATCTGC-T-CCACTACTGCTTAGG-G
38903381 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
38903425 AGATAAGAT
1 AGATAAGAT
38903434 CAACAATTTT
Statistics
Matches: 92, Mismatches: 43, Indels: 12
0.63 0.29 0.08
Matches are distributed among these distances:
42 6 0.07
43 3 0.03
44 75 0.82
45 4 0.04
46 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (44 bp):
AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
Found at i:38905145 original size:44 final size:45
Alignment explanation
Indices: 38904966--38905146 Score: 97
Period size: 44 Copynumber: 4.1 Consensus size: 45
38904956 TCTTAGAAAA
* *
38904966 ATAAGAATATGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAG
1 ATAAGACTATGCCGTCTTCAATCTGCTCCACTACTGCTTAGGGAG
*** * * * * * *
38905011 ATAAGATCTA--AAATTTTCAACCTACTCCGCTACTGCTCAGAGAG
1 ATAAGA-CTATGCCGTCTTCAATCTGCTCCACTACTGCTTAGGGAG
* * ** * * * *
38905055 ACAAGGCT-TGGTGGCTTAAATCTGCTTCCCACTA-T-ATT-GGAAAG
1 ATAAGACTATGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-GAG
*
38905099 ATAAGACT-TGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAG
1 ATAAGACTATGCCGTCTTCAATCTGCTCCACTACTGCTTAGGGAG
38905143 ATAA
1 ATAA
38905147 TATCTAAAAT
Statistics
Matches: 92, Mismatches: 35, Indels: 19
0.63 0.24 0.13
Matches are distributed among these distances:
42 6 0.07
43 5 0.05
44 64 0.70
45 10 0.11
46 7 0.08
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (45 bp):
ATAAGACTATGCCGTCTTCAATCTGCTCCACTACTGCTTAGGGAG
Found at i:38906981 original size:102 final size:102
Alignment explanation
Indices: 38906806--38907014 Score: 312
Period size: 102 Copynumber: 2.0 Consensus size: 102
38906796 TTCCCACTAT
* * * * *
38906806 CTTGGAAAGATAAGATTTGTCGTCTTGATCTGCTCCATTACTACTTAGGGAGATAAGATCTACAA
1 CTTGGAAAGATAAGATTTGCCATCTTGATCTACTCCACTACTACTTAGAGAGATAAGATCTACAA
* * *
38906871 TTTTCAACCCACTCCGTTGCTG-TAAGGGGGACAATG
66 TTTTCAACCCACTCCGCTGCTGCTAAGGGAGACAAGG
*
38906907 CTTGGAAAGATAAGATTTGCCATCTTCGATCTACTCCACTACTACTTAGAGAGATGAGATCTACA
1 CTTGGAAAGATAAGATTTGCCATCTT-GATCTACTCCACTACTACTTAGAGAGATAAGATCTACA
*
38906972 ATTTTCAACCCACTCCGCTGCTGCTTAGGGAGACAAGG
65 ATTTTCAACCCACTCCGCTGCTGCTAAGGGAGACAAGG
38907010 CTTGG
1 CTTGG
38907015 TGGCTTAAAT
Statistics
Matches: 96, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
101 24 0.25
102 56 0.58
103 16 0.17
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (102 bp):
CTTGGAAAGATAAGATTTGCCATCTTGATCTACTCCACTACTACTTAGAGAGATAAGATCTACAA
TTTTCAACCCACTCCGCTGCTGCTAAGGGAGACAAGG
Found at i:38907087 original size:132 final size:132
Alignment explanation
Indices: 38906911--38907250 Score: 479
Period size: 132 Copynumber: 2.6 Consensus size: 132
38906901 ACAATGCTTG
* * * *
38906911 GAAAGATAAGATTTGCCA-TCTTCGATCTA-CTCCACTACTACTTAGAGAGATGAGATCTACAAT
1 GAAAGATAAGATTTG-TAGTCTTCGATC-AGCTCCACTACTGCTTAGGGAGATAAGATCTACAAT
* * *
38906974 TTTCAACCCACTCCGCTGCTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTTCCC-CTA
64 TTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGATTGGTGACTTAAATCTGC-TTCCCACTA
38907038 TCTTA
128 TCTTA
38907043 GAAAGATAAGATTTGTAGTCTTCGATCAGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTT
1 GAAAGATAAGATTTGTAGTCTTCGATCAGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTT
38907108 TCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGATTGGTGACTTAAATCTGCTTCCCACTATCT
66 TCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGATTGGTGACTTAAATCTGCTTCCCACTATCT
*
38907173 TG
131 TA
* * * * * * * * *
38907175 GAAAGATATGACTTGTTGTCTTCGATCTGTTCTACTACTGCTAAGGGAGATAACATCAACAATTT
1 GAAAGATAAGATTTGTAGTCTTCGATCAGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTT
38907240 TCAACCCACTC
66 TCAACCCACTC
38907251 NNNNNNNNNN
Statistics
Matches: 188, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
131 7 0.04
132 181 0.96
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (132 bp):
GAAAGATAAGATTTGTAGTCTTCGATCAGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTT
TCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGATTGGTGACTTAAATCTGCTTCCCACTATCT
TA
Found at i:38908008 original size:132 final size:132
Alignment explanation
Indices: 38907609--38908972 Score: 1928
Period size: 132 Copynumber: 10.4 Consensus size: 132
38907599 NNNNNNNNNN
*
38907609 CTTAGAGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
1 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
* **
38907674 GGCTTAAATCTGCTTCCCACTATCCTGGAAAGAGCAGATTTG-CCGTCTTCGATCTGCTCCACTA
66 GGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCC-TCTTCGATCTGCTCCACTA
38907738 CTG
130 CTG
* * * *
38907741 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGTTGCTG-TAAGGGGGACAATGCTTGGT
1 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
* * *
38907805 GACTTAAATCTGCTTCCCACTATGTTGGAAAGATAAGATTTG-CCGTCTTCGGTCTGCTCCACTA
66 GGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCC-TCTTCGATCTGCTCCACTA
*
38907869 CTA
130 CTG
* *
38907872 CTTAGGGAGATAAGATCTACAATTTTCAACCTACTCCGCTGCTGCTCAGGGAGACAAGGCTAGGT
1 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
* * * * *
38907937 GGCTTAAATTTTCTTTCCC-CTATCTTGGAAATATAAGATTTGTCCTCTTCGATCAGCTCCACAA
66 GGCTTAAATCTGC-TTCCCACTATCTTGGAAAGATAAGATTTGTCCTCTTCGATCTGCTCCACTA
38908001 CTG
130 CTG
* *
38908004 CTTAGGGACATAAGAACTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
1 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
* * * *
38908069 GGCTTAAATCTACTTCCC-CTATCTTGG-AAGA-AAGATTGGTCATCTTCGATCTGTTCCACTAC
66 GGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCCTCTTCGATCTGCTCCACTAC
38908131 TG
131 TG
*
38908133 CTTAGGGAGATAAGATCTACAATTTTCAGCCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
1 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
* * *
38908198 GGCTTAAATCTGCTTCCCACTATGTTGGAAAGATAAGATTT-CCCGTCTTCGATCTACTCCACTA
66 GGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCC-TCTTCGATCTGCTCCACTA
38908262 CTG
130 CTG
* * * * * * *
38908265 CTTAGGGAGATCAGATCTTCAATTTTGAACCCACTCCGATGCTGCTTAGGGTGACAAGGCTTAGT
1 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
** ** * *
38908330 CACTTAAAAATGCTTCCCACTATCTTGGAAATATAACG-TTTGTCGTCTTCGATCTGCTCCACTA
66 GGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAA-GATTTGTCCTCTTCGATCTGCTCCACTA
38908394 CTG
130 CTG
* * * *
38908397 CTTAGAGG-GATAAGATCTACAATTTTCAATCCACTCCGTTGCTG-TCAGGGAGACAATTGCCTG
1 CTTAG-GGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAA-GGCTTG
* * * *
38908460 GTGGCTTAAATCTACTTCCCCCTATCTTGGAAAAATAAGATTTG-CCATCTTCGATCTGCTGCAC
64 GTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCC-TCTTCGATCTGCTCCAC
38908524 TACTG
128 TACTG
* * * * *
38908529 CTTAGGGACATAAGATCTATAATTTTCAACCCACACCGCTGCTGCTCAGGGAGACAATGTTTGGT
1 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
* * ** *
38908594 GACTTAAATCTGCTTCCCACTATCTGGGAAAGATAAGATTTGTTGTCTTTGATCTGCTCCACTAC
66 GGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCCTCTTCGATCTGCTCCACTAC
38908659 TG
131 TG
* *
38908661 CTTAAGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGCAGACAAGGCTTGGT
1 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
* *
38908726 GGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGTCGTCTTCGATCTGCTCCCACTA
66 GGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCCTCTTCGATCTGCT-CCACTA
38908791 CTG
130 CTG
* * *
38908794 CTTAGGGAGATAAGATCTATAATTTTCAACCCACTCCGCTACTGCTCGGGGAGACAAGGCTTGGT
1 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
* *
38908859 GGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGTCATCTTCGATCTGCTCCACTAC
66 GGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCCTCTTCGATCTGCTCCACTAC
38908924 TG
131 TG
38908926 CTTAGGGAGATAAGATCTACAA-TTTC-ACCCACTCCGCTGCTGCTCAG
1 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAG
38908973 AGANNNNNNN
Statistics
Matches: 1093, Mismatches: 122, Indels: 36
0.87 0.10 0.03
Matches are distributed among these distances:
129 107 0.10
130 30 0.03
131 156 0.14
132 651 0.60
133 149 0.14
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (132 bp):
CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGT
GGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCCTCTTCGATCTGCTCCACTAC
TG
Found at i:38908937 original size:44 final size:45
Alignment explanation
Indices: 38908756--38908941 Score: 114
Period size: 44 Copynumber: 4.2 Consensus size: 45
38908746 TATCTTGAAA
* *
38908756 AGATAAGATTTGTCGTCTTCGATCTGCTCCCACTACTGCTTAGGG
1 AGATAAGATTTGTCATCTTCAATCTGCTCCCACTACTGCTTAGGG
* * * * * ** * **
38908801 AGATAAGATCTATAATTTTCAACCCACT-CCGCTACTGCTCGGGG
1 AGATAAGATTTGTCATCTTCAATCTGCTCCCACTACTGCTTAGGG
* * * ** * **
38908845 AGACAAGGCTTGGT-GGCTTAAATCTGCTTCCCACTA-T-CTT-GAAA
1 AGATAA-GATTTGTCATCTTCAATCTGC-TCCCACTACTGCTTAG-GG
*
38908889 AGATAAGATTTGTCATCTTCGATCTGCT-CCACTACTGCTTAGGG
1 AGATAAGATTTGTCATCTTCAATCTGCTCCCACTACTGCTTAGGG
38908933 AGATAAGAT
1 AGATAAGAT
38908942 CTACAATTTC
Statistics
Matches: 96, Mismatches: 37, Indels: 17
0.64 0.25 0.11
Matches are distributed among these distances:
42 6 0.06
43 8 0.08
44 52 0.54
45 25 0.26
46 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (45 bp):
AGATAAGATTTGTCATCTTCAATCTGCTCCCACTACTGCTTAGGG
Found at i:38909313 original size:132 final size:132
Alignment explanation
Indices: 38909076--38911182 Score: 1544
Period size: 132 Copynumber: 15.9 Consensus size: 132
38909066 NNNNNNNNNN
* * *
38909076 GCTCCACTACTGCTTAGGTAGATAAGATCTAAAATTTTCAACCCACTACGCTGCTGCTCAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
*
38909141 ACAAGGCTTGGT-AGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTTGTCTTCGA
66 ACAAGGCTTGGTGA-CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGA
38909205 TCT
130 TCT
** * *
38909208 GCTCCACTACAACTTAGGGAGATAAGATCTACAATTTTCAACTCACTCCGCTGCTGCTCAGTGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
* * *
38909273 ACAATGCTTGGTGACTTAAATCTGCTTCCTACTATCTTGGAAAGATAAGATTTGTTGTCTTCGAT
66 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGAT
38909338 CT
131 CT
* *
38909340 GCTCCACAACTGCTTAGGGAGATAAAATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
*
38909405 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAGGATAAGATTTGTCGTCTTCGAA
66 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCG-A
*
38909470 TCA
130 TCT
**
38909473 GCCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCCACTGCTCAGGGA
1 G-CTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGA
* *
38909538 GACAAGGCTTGGTGACTTAAATCTGCTTCGCACTATCTTGGAAAGATAAGATTTGTTGTCTTCGA
65 GACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGA
38909603 TCT
130 TCT
* * * * * * * *
38909606 GTTCTACTACTGCTAAGGGAGGTAACATCAACAATTTTCAACCCACTCTGCAGCTGCTCAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
* ** * * * *
38909671 ACAATGCTTGGTGACCGAAATATGCTTCCCATTATCTTGGAAAAATAAGATTTGCCGTCTTCGAT
66 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGAT
38909736 CT
131 CT
* * * * * * *
38909738 GCTCCACTACAGCTTAGGGAGATAAGATTTAAAATTTTCAACCTACTACGCTACTGCTCAGAGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
* * *
38909803 ACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGTCGCCTTCGAT
66 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGAT
38909868 CT
131 CT
* * * ** ** * * ** * * *
38909870 GCTCCACTACAAAAATAAGATTTGCCG-TCTTCGATTTGCCGTCTTCGACCCACTCTGCTGCTGC
1 GCTCCACTAC-----T--GCTTAG-GGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGC
* * * * * *
38909934 TTAGGGAGACAAGGGTTGGTGACTTAAATATGCTTCCCACTATCATGGAAAGATACGATTTGCCG
58 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
38909999 TCTTCGATCT
123 TCTTCGATCT
* *
38910009 GCTCCACTACTGCTTAGGGAGATAAGGATTTACAATTTTCTAACCCACACCGCTGCTGCTCAGGG
1 GCTCCACTACTGCTTAGGGAGATAA-GATCTACAATTTTC-AACCCACTCCGCTGCTGCTCAGGG
* * * * ** *
38910074 AGACAATGTTTGGTGACTTAAATCTGCTTCCCACTATTTTCGAAAGATAAGATTTACCGTCATCG
64 AGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCG
38910139 ATCT
129 ATCT
* ********************
38910143 GCTCCACTACTGCTTAGGGAGATAAGATCGACAATTTTCAACCCNNNNNNNNNNNNNNNNNNNNN
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC-ACTCCGCTGCTGCTCAGGGA
*****************************************************************
38910208 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
65 GACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGA
***
38910273 NNN
130 TCT
*****************************************************************
38910276 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
* * * * *
38910341 A-AAGGGTTGGTGGCTTAAATCTACTTCCCCCTATCTTGGAAAGATAAGATTTGTCGTCATCGAT
66 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGAT
38910405 CT
131 CT
* * * * * *
38910407 GCACTACAATTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGGTTCTCAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
* *
38910472 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATTTTGGAAAGATAAGATTTGCCGTCTTCGAT
66 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGAT
38910537 CT
131 CT
* * * * * *
38910539 GCACTACTATTGCTTAGGGAGATAAGATCTATAATTTTCAACCCACTCCGCCGCAGCTCAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
* * * * * **
38910604 ACAATGCTTGGAGACTTAAATCTGTTTCCCACTATGTTGGAAAGATAAAATTTACCGTCTTCGAT
66 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGAT
38910669 CT
131 CT
*
38910671 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTTAACCCACTCCGCTGCTGCTCAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
* * *
38910736 ACAAGGCTTGGTGACTTAAATCTGCTTCCCATTATCTTGGAAAGATAAGATTTGCCATCTTCGAT
66 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGAT
38910801 CT
131 CT
* * *
38910803 GCTCCACTACTGCTTAAGGAGATAAGATCTACAATTTTCAAGCCACACCGCTGCTGCTCAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
* * * *
38910868 ACAATGTTTGGTGACTTAAATCTGCTTCCCACTATTTTGGAAAGATAAGA-TTGCCGTC-TCGAT
66 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGAT
38910931 CT
131 CT
* * *
38910933 GCACTAACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACACCGCTGCTGCTCAGGGA
1 GCTC-CACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGA
* * **
38910998 GACAATGTTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTACCGTCTTCGA
65 GACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGA
38911063 TCT
130 TCT
* * *
38911066 GCTCCACAACTGCTTAGGGACATAAGAACTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
* *
38911131 ACAAGGCTTGGTGGCTTAAATCTACTTTCCC-CTATCTTGGAAAGATAAGATT
66 ACAAGGCTTGGTGACTTAAATCTGC-TTCCCACTATCTTGGAAAGATAAGATT
38911183 NNNNNNNNNN
Statistics
Matches: 1508, Mismatches: 447, Indels: 40
0.76 0.22 0.02
Matches are distributed among these distances:
130 10 0.01
131 116 0.08
132 1007 0.67
133 46 0.03
134 226 0.15
139 102 0.07
140 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.28
Consensus pattern (132 bp):
GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGAT
CT
Found at i:38909813 original size:398 final size:396
Alignment explanation
Indices: 38909076--38911182 Score: 1483
Period size: 398 Copynumber: 5.3 Consensus size: 396
38909066 NNNNNNNNNN
* * *
38909076 GCTCCACTACTGCTTAGGTAGATAAGATCTAAAATTTTCAACCCACTACGCTGCTGCTCAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
38909141 ACAAGGCTTGGT-AGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTTGTCTTCGA
66 ACAAGGCTTGGTGA-CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTTGTCTTCGA
** * *
38909205 TCTGCTCCACTACAACTTAGGGAGATAAGATCTACAATTTTCAACTCACTCCGCTGCTGCTCAGT
130 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGG
* **
38909270 GAGACAATGCTTGGTGACTTAAATCTGCTTCCTACTATCTTGGAAAGATAAGATTTGTTGTCTTC
195 GAGACAATGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTC
* * * *
38909335 GATCTGCTCCACAACTGCTTAGGGAGATAAAATCTACAATTTTCAACCCACTCCGCTGCTGCTCA
260 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTACGCTACTGCTCA
* * * *
38909400 GGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAGGATAAGATTTGTCGTCT
325 GAGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGTCGCCT
38909465 TCGAATCA
390 TCG-ATCA
**
38909473 GCCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCCACTGCTCAGGGA
1 G-CTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGA
*
38909538 GACAAGGCTTGGTGACTTAAATCTGCTTCGCACTATCTTGGAAAGATAAGATTTGTTGTCTTCGA
65 GACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTTGTCTTCGA
* * * * * * * *
38909603 TCTGTTCTACTACTGCTAAGGGAGGTAACATCAACAATTTTCAACCCACTCTGCAGCTGCTCAGG
130 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGG
** * * *
38909668 GAGACAATGCTTGGTGACCGAAATATGCTTCCCATTATCTTGGAAAAATAAGATTTGCCGTCTTC
195 GAGACAATGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTC
* * * *
38909733 GATCTGCTCCACTACAGCTTAGGGAGATAAGATTTAAAATTTTCAACCTACTACGCTACTGCTCA
260 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTACGCTACTGCTCA
*
38909798 GAGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGTCGCCT
325 GAGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGTCGCCT
*
38909863 TCGATCT
390 TCGATCA
* * * ** ** * * ** * * *
38909870 GCTCCACTACAAAAATAAGATTTGCCG-TCTTCGATTTGCCGTCTTCGACCCACTCTGCTGCTGC
1 GCTCCACTAC-----T--GCTTAG-GGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGC
* * * * * **
38909934 TTAGGGAGACAAGGGTTGGTGACTTAAATATGCTTCCCACTATCATGGAAAGATACGATTTGCCG
58 TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTTG
* *
38909999 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGGATTTACAATTTTCTAACCCACACCGCTG
123 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA-GATCTACAATTTTC-AACCCACTCCGCTG
* * *
38910064 CTGCTCAGGGAGACAATGTTTGGTGACTTAAATCTGCTTCCCACTATTTTCGAAAGATAAGATTT
186 CTGCTCAGGGAGACAATGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTT
* * * ******
38910129 ACCGTCATCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCGACAATTTTCAACCCNNNNNNN
251 GCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC-ACTACG
*****************************************************************
38910194 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
315 CTACTGCTCAGAGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGA
*****************
38910259 NNNNNNNNNNNNNNNNN
380 TTTGTCGCCTTCGATCA
*****************************************************************
38910276 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
* * * * * *
38910341 A-AAGGGTTGGTGGCTTAAATCTACTTCCCCCTATCTTGGAAAGATAAGATTTGTCGTCATCGAT
66 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTTGTCTTCGAT
* * * * * *
38910405 CTGCACTACAATTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGGTTCTCAGGG
131 CTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGG
* *
38910470 AGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATTTTGGAAAGATAAGATTTGCCGTCTTCG
196 AGACAATGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCG
* * * * * ** *
38910535 ATCTGCACTACTATTGCTTAGGGAGATAAGATCTATAATTTTCAACCCACTCCGCCGCAGCTCAG
261 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTACGCTACTGCTCAG
* * * * * * * ** *
38910600 GGAGACAATGCTTGGAGACTTAAATCTGTTTCCCACTATGTTGGAAAGATAAAATTTACCGTCTT
326 AGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGTCGCCTT
*
38910665 CGATCT
391 CGATCA
*
38910671 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTTAACCCACTCCGCTGCTGCTCAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
* ***
38910736 ACAAGGCTTGGTGACTTAAATCTGCTTCCCATTATCTTGGAAAGATAAGATTTGCCATCTTCGAT
66 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTTGTCTTCGAT
* * *
38910801 CTGCTCCACTACTGCTTAAGGAGATAAGATCTACAATTTTCAAGCCACACCGCTGCTGCTCAGGG
131 CTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGG
* *
38910866 AGACAATGTTTGGTGACTTAAATCTGCTTCCCACTATTTTGGAAAGATAAGA-TTGCCGTC-TCG
196 AGACAATGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCG
* * *
38910929 ATCTGCACTAACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCAC-ACCGCTGCTGCTC
261 ATCTGCTC-CACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTA-CGCTACTGCTC
* * * * ** *
38910993 AGGGAGACAATGTTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTACCGTC
324 AGAGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGTCGCC
*
38911058 TTCGATCT
389 TTCGATCA
* * *
38911066 GCTCCACAACTGCTTAGGGACATAAGAACTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
* *
38911131 ACAAGGCTTGGTGGCTTAAATCTACTTTCCC-CTATCTTGGAAAGATAAGATT
66 ACAAGGCTTGGTGACTTAAATCTGC-TTCCCACTATCTTGGAAAGATAAGATT
38911183 NNNNNNNNNN
Statistics
Matches: 1235, Mismatches: 457, Indels: 38
0.71 0.26 0.02
Matches are distributed among these distances:
394 11 0.01
395 229 0.19
396 299 0.24
397 18 0.01
398 428 0.35
399 2 0.00
401 1 0.00
403 116 0.09
404 12 0.01
405 119 0.10
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.28
Consensus pattern (396 bp):
GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTTGTCTTCGAT
CTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGG
AGACAATGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCG
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTACGCTACTGCTCAG
AGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGAAAAGATAAGATTTGTCGCCTT
CGATCA
Found at i:38909907 original size:14 final size:14
Alignment explanation
Indices: 38909888--38909917 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
38909878 ACAAAAATAA
38909888 GATTTGCCGTCTTC
1 GATTTGCCGTCTTC
38909902 GATTTGCCGTCTTC
1 GATTTGCCGTCTTC
38909916 GA
1 GA
38909918 CCCACTCTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.10, C:0.27, G:0.23, T:0.40
Consensus pattern (14 bp):
GATTTGCCGTCTTC
Found at i:38911085 original size:395 final size:395
Alignment explanation
Indices: 38910342--38911182 Score: 1344
Period size: 395 Copynumber: 2.1 Consensus size: 395
38910332 NNNNNNNNNA
* * *
38910342 AAGGGTTGGTGGCTTAAATCTACTTCCCCCTATCTTGGAAAGATAAGATTTGTCGTCATCGATCT
1 AAGGCTTGGTGGCTTAAATCTACTT-CCCCTATCTTGGAAAGATAAGATTTGCCATCATCGATCT
* * * * * *
38910407 GCACTACAATTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGGTTCTCAGGGAG
65 GCACCACAACTGCTTAAGGAGATAAGATCTACAATTTTCAACCCACACCGCTGCTGCTCAGGGAG
38910472 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATTTTGGAAAGATAAGATTTGCCGTCTTCGAT
130 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATTTTGGAAAGATAAGATTTGCCGTCTTCGAT
* * *
38910537 CTGCACTACTATTGCTTAGGGAGATAAGATCTATAATTTTCAACCCACTCCGCCGCAGCTCAGGG
195 CTGCACTACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACACCGCCGCAGCTCAGGG
* *
38910602 AGACAATGCTTGGAGACTTAAATCTGTTTCCCACTATGTTGGAAAGATAAAATTTACCGTCTTCG
260 AGACAATGCTTGGAGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAAATTTACCGTCTTCG
* * * *
38910667 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTTAACCCACTCCGCTGCTGCTCAG
325 ATCTGCTCCACAACTGCTTAGGGACATAAGAACTACAATTTTCAACCCACTCCGCTGCTGCTCAG
38910732 GGAGAC
390 GGAGAC
* * * *
38910738 AAGGCTTGGTGACTTAAATCTGCTTCCCATTATCTTGGAAAGATAAGATTTGCCATCTTCGATCT
1 AAGGCTTGGTGGCTTAAATCTACTTCCC-CTATCTTGGAAAGATAAGATTTGCCATCATCGATCT
* * *
38910803 GCTCCACTACTGCTTAAGGAGATAAGATCTACAATTTTCAAGCCACACCGCTGCTGCTCAGGGAG
65 GCACCACAACTGCTTAAGGAGATAAGATCTACAATTTTCAACCCACACCGCTGCTGCTCAGGGAG
* *
38910868 ACAATGTTTGGTGACTTAAATCTGCTTCCCACTATTTTGGAAAGATAAGA-TTGCCGTC-TCGAT
130 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATTTTGGAAAGATAAGATTTGCCGTCTTCGAT
* *
38910931 CTGCACTAACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACACCGCTGCTGCTCAGG
195 CTGCACT-ACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACACCGCCGCAGCTCAGG
* * *
38910996 GAGACAATGTTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTACCGTCTTC
259 GAGACAATGCTTGGAGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAAATTTACCGTCTTC
38911061 GATCTGCTCCACAACTGCTTAGGGACATAAGAACTACAATTTTCAACCCACTCCGCTGCTGCTCA
324 GATCTGCTCCACAACTGCTTAGGGACATAAGAACTACAATTTTCAACCCACTCCGCTGCTGCTCA
38911126 GGGAGAC
389 GGGAGAC
38911133 AAGGCTTGGTGGCTTAAATCTACTTTCCCCTATCTTGGAAAGATAAGATT
1 AAGGCTTGGTGGCTTAAATCTAC-TTCCCCTATCTTGGAAAGATAAGATT
38911183 NNNNNNNNNN
Statistics
Matches: 407, Mismatches: 35, Indels: 7
0.91 0.08 0.02
Matches are distributed among these distances:
394 12 0.03
395 232 0.57
396 163 0.40
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.30
Consensus pattern (395 bp):
AAGGCTTGGTGGCTTAAATCTACTTCCCCTATCTTGGAAAGATAAGATTTGCCATCATCGATCTG
CACCACAACTGCTTAAGGAGATAAGATCTACAATTTTCAACCCACACCGCTGCTGCTCAGGGAGA
CAAGGCTTGGTGACTTAAATCTGCTTCCCACTATTTTGGAAAGATAAGATTTGCCGTCTTCGATC
TGCACTACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACACCGCCGCAGCTCAGGGA
GACAATGCTTGGAGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAAATTTACCGTCTTCGA
TCTGCTCCACAACTGCTTAGGGACATAAGAACTACAATTTTCAACCCACTCCGCTGCTGCTCAGG
GAGAC
Found at i:38912245 original size:132 final size:132
Alignment explanation
Indices: 38912005--38912852 Score: 1069
Period size: 132 Copynumber: 6.4 Consensus size: 132
38911995 NNNCTGTTCT
* * * * * * *
38912005 ACTACTCCTAAGGGAGATAACATCAACAATTTTCAACCCACTCTGCAGCTGCTCAGGGAGACAAT
1 ACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAG
* ** * * * *
38912070 GCTCGGTGACCGAAATCTGCTTCCCATTATCTTGGAAAAATAAAATTTACCGTCTTCGATCTACT
66 GCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAAATTTGCCGTCTTCGATCTGCT
38912135 CC
131 CC
* * * *
38912137 ACTACTGCTTAGGGAGATAAGATCTAGAATTTTCAACCCATTCCGCAGCTGCTCAGGGAGACAAT
1 ACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAG
** * *
38912202 GCTTGGTGACTTAAATCTGCTTCCCACTAAGTTGGAAAGATAAAATTTGTCGTTTTCGATCTGCT
66 GCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAAATTTGCCGTCTTCGATCTGCT
38912267 CC
131 CC
* * * * *
38912269 ACTACTGCTGAGGGAGATAAGATTTACAATTTTCGACCCACTCCGCTGCTGCTTAGGGGGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAG
* * * * * *
38912334 GGTTGGTGACTTAAATATGCTTCCCACTATCATGGAAAGATAAGATTTGCCGTCTTCAATCTACT
66 GCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAAATTTGCCGTCTTCGATCTGCT
38912399 CC
131 CC
* * * *
38912401 ACTACTGCTTAGGGAGATAAGATCAACAATTTTCAACCCACTTCACTGCTGCTTAGGGAGACAAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAG
* * * * *
38912466 GCTTGGTGGCTTAAATCTGCTTCCCACTATAGTGGGAAA-AAAAAACTTGCCGTCTTCGATCTGC
66 GCTTGGTGACTTAAATCTGCTTCCCACTAT-CTTGGAAAGATAAAATTTGCCGTCTTCGATCTGC
38912530 TCC
130 TCC
38912533 ACTACTGCTTAGGGAGATAAGATCTA-AAGTTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAA
1 ACTACTGCTTAGGGAGATAAGATCTACAA-TTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAA
* * *
38912597 GGCTTGG-GAGCTTAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTG
65 GGCTTGGTGA-CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAAATTTGCCGTCTTCGATCTG
38912661 CTCC
129 CTCC
* * *
38912665 ACTACAGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCTGGTGCTGCTCAGGGAGAC-AG
1 ACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAG
* **
38912729 TGCTTGGGTG-CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGATG-CGTTCGATCT
66 -GCTT-GGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAAATTTGCCGTC-TTCGATCT
*
38912792 GCTCG
128 GCTCC
** * * ** *
38912797 AAAACTGCGTAGGGAGATAAGATCGACCTTTTTCAACCCACTCCGCTGCTGTTCAG
1 ACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAG
38912853 NNNNNNNNNN
Statistics
Matches: 623, Mismatches: 84, Indels: 18
0.86 0.12 0.02
Matches are distributed among these distances:
131 12 0.02
132 601 0.96
133 9 0.01
134 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (132 bp):
ACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAG
GCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAAATTTGCCGTCTTCGATCTGCT
CC
Found at i:38914395 original size:132 final size:132
Alignment explanation
Indices: 38914158--38916352 Score: 3332
Period size: 132 Copynumber: 16.6 Consensus size: 132
38914148 NNNNNNNNNN
* * * *
38914158 GCTGCTGCTCAGGGAGACAATGTTTGGTGACTTAAATATGCTTCCCACTATTTTGGAAAGATAAG
1 GCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAG
* * *
38914223 ATTTACCGTCTTCGATCTGCTCCACTACTGCATAGGGAGATAAGATCTACAATTTTCAAGCCACT
66 ATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACT
38914288 CC
131 CC
* *
38914290 GCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTACTTCCCATTATCTTGGAAAGATAAG
1 GCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAG
* *
38914355 ATTTGCCATCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACT
66 ATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACT
**
38914420 TT
131 CC
* * * *
38914422 GCTGCTGCTCAGGGAGACAATGTTTGGTGACTTAAATTTGCTTCCCACTATGTTGGAAAGATAAG
1 GCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAG
* * *
38914487 ATTTTCCGTCTTCGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTACAATTTTCAAGCCACT
66 ATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACT
38914552 CC
131 CC
* ** *
38914554 GCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTCAGAAAGATAGG
1 GCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAG
* *
38914619 ATTTGCCGTCTTCGATCTACTCCACCACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACT
66 ATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACT
**
38914684 TT
131 CC
* *
38914686 GCTGCTGCTCAGGGAGACAATGCTTGGTGACTTAAATTTGCTTCCCACTATCTTGGAAAGATAAG
1 GCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAG
* *
38914751 ATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTTAACCCACT
66 ATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACT
38914816 CC
131 CC
* *
38914818 GCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCCGCTTCCCACTATCTTGGAAAGATAAG
1 GCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAG
* * * * *
38914883 ATTTGTCGTCTTCAATCTGCTCCACTACTGCTTAGGGAAATAATATCTACAATTTTTAACCCACT
66 ATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACT
38914948 CC
131 CC
* * * *
38914950 GCTGCTGCTCATGGAGACAAGGCTTGGTGACTTAAGTCTGCATCCCATTATCTTGGAAAGATAAG
1 GCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAG
* * * * * *
38915015 ATTTGCCATCTTCGATTTGCTGCACTACTGCTTAGGGAGATAAGATCTATAATTTTCAGCCCACA
66 ATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACT
*
38915080 CA
131 CC
* ** *
38915082 GCTGCTGCTCATGGAGACAA-TTTTGGTGACTTAAATCTGCTTCCCACTATCTTGGGAAGATAAG
1 GCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAG
**
38915146 ATTTGTTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACT
66 ATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACT
38915211 CC
131 CC
* * *
38915213 GCTGCTGCTCTGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAG
1 GCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAG
* *
38915278 ATTTGTCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACT
66 ATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACT
38915343 CC
131 CC
* * * * * * *
38915345 GCTGCTGCTCGGGGAGACAAGGCTTGGTGGCATAGATCTACTTCCCCCTATCTTGGAAAGATGAG
1 GCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAG
* * ** * *
38915410 ATTTGTCGTCTTCGATCTGCTCGAAGACTGCTTAGGGAGATAAGATCTACAAGTTTCAGCCCACT
66 ATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACT
38915475 CC
131 CC
* * * * *
38915477 GCTGCAGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCTACAATGTTGGAAATATAAG
1 GCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAG
* * ** *
38915542 ATTTTCCCTCTTCGATCTGCTCTTCTACTGCTTAGGGCGATAAGATCTACAATTTTCAACCCACT
66 ATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACT
38915607 CC
131 CC
* * *
38915609 GCTGCTGCTTAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCATTATCTTAGAAAGATAAG
1 GCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAG
* * * * *
38915674 ATTTGACATCTTCGATCTGCTCCACTACTGCTTAGAGAGATACGATCTATAATTTTCAACCCACT
66 ATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACT
38915739 CC
131 CC
*
38915741 GCTGCTGCTCAGGGAGACAATGCTTGGTGACTTAAATCTTGCTTCCCACTATCTTGGAAAGATAA
1 GCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATC-TGCTTCCCACTATCTTGGAAAGATAA
* * *
38915806 GATTTGTCGTCTTCGATCTGATCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCAT
65 GATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCAC
38915871 TCC
130 TCC
* * *
38915874 GCTGCTGCTCAGGGAGACAATGCTTGGTGACTTAAATCTGCTTCCTACTATGTTGGAAAGATAAG
1 GCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAG
* *
38915939 ATTTTCCCTCTTCGATCTGCCTCCACTACTGCTTAGGGAGATAA-ATCTACAATTTTCAACCCAC
66 ATTTGCCGTCTTCGATCTG-CTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCAC
38916003 TCC
130 TCC
*
38916006 GCTGCTGCTCAGGGAGACGAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAG
1 GCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAG
* * * *
38916071 GTTTACCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTTAACCCACT
66 ATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACT
38916136 CC
131 CC
* *
38916138 GCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAGTCTGCTTCCCATTATCTTGGAAAGATAAG
1 GCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAG
* *
38916203 ATTTGCCATCTTCGATCTGCTGCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACT
66 ATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACT
38916268 CC
131 CC
* *
38916270 GCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGAAAAGATAAG
1 GCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAG
* *
38916335 ATTTGTCATCTTCGATCT
66 ATTTGCCGTCTTCGATCT
38916353 NNNNNNNNNN
Statistics
Matches: 1864, Mismatches: 195, Indels: 8
0.90 0.09 0.00
Matches are distributed among these distances:
131 138 0.07
132 1580 0.85
133 146 0.08
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (132 bp):
GCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAG
ATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACT
CC
Found at i:38916941 original size:132 final size:132
Alignment explanation
Indices: 38916700--38917534 Score: 1253
Period size: 132 Copynumber: 6.3 Consensus size: 132
38916690 NNNNNNNNNN
* *
38916700 AATCTGCTTCCCATTATCTTGGAAAGATAAGATTTGCCATCTTTGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTA
*
38916765 GGGAGATAAGTTCTACAATTTTC-ACGCCACACCGCTGCTGCTCAGGGAGACAATGTTTGGTGAC
66 GGGAGATAAGATCTACAATTTTCAAC-CCACACCGCTGCTGCTCAGGGAGACAATGTTTGGTGAC
38916829 TTA
130 TTA
* * * *
38916832 AATTTGCTTCCCACTATTTTGGAAAGATAAGATTTACCGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTA
**
38916897 GGGAGATAAGATCTACAATTTTCAACCCACACCGCTGCTGCTCAGGGAGACAAAATTTGGTGACT
66 GGGAGATAAGATCTACAATTTTCAACCCACACCGCTGCTGCTCAGGGAGACAATGTTTGGTGACT
38916962 TA
131 TA
* * * * * *
38916964 AATCTACTTCCCACTATTTTGGAAAGTTAAGATCTGCCGTCTTCGATTTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTA
38917029 GGGAGATAAGATCTACAATTTTCAACCCACTA-CGCTGCTGCTCAGGGAGACAATGTTTGGTGAC
66 GGGAGATAAGATCTACAATTTTCAACCCAC-ACCGCTGCTGCTCAGGGAGACAATGTTTGGTGAC
38917093 TTA
130 TTA
* * * *
38917096 AATATGCTTCCCACTATTTTGGAAAGATAAGATTTACCATCTTCGATCTGCTCCACTACTGCATA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTA
* * * * * *
38917161 GGGAGATAAGATCTATAATTTTCAAGCCACTCTGCTGCTGCTCAGGGAGACAAGGCTTGGTGACT
66 GGGAGATAAGATCTACAATTTTCAACCCACACCGCTGCTGCTCAGGGAGACAATGTTTGGTGACT
38917226 TA
131 TA
* * *
38917228 AATCTGCTTCCCATTATCTTGGAAAGATAAGATTTGCCATCTTAGATCTGCTGCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTA
* *
38917293 GGGAGATAAGATCTATAATTTTCAGCCCACACCGCTGCTGCTCAGGGAGACAATGTTTGGTGACT
66 GGGAGATAAGATCTACAATTTTCAACCCACACCGCTGCTGCTCAGGGAGACAATGTTTGGTGACT
38917358 TA
131 TA
* * * *** *
38917360 AATCTGTTTCCCACTATCTTGGGAAGATAATATTTGTTGTCTTCGATATGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTA
* * * *
38917425 GGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATTTTCAACCCACACCGCTGCTGCTCAGGGAGACAATGTTTGGTGACT
38917490 TA
131 TA
*
38917492 AATCTGCTTCCCACTATCTT-GAAAGATAAGATTTGTCATCTTC
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTC
38917535 NNNNNNNNNN
Statistics
Matches: 635, Mismatches: 65, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
131 19 0.03
132 613 0.97
133 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (132 bp):
AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTA
GGGAGATAAGATCTACAATTTTCAACCCACACCGCTGCTGCTCAGGGAGACAATGTTTGGTGACT
TA
Found at i:38918068 original size:132 final size:132
Alignment explanation
Indices: 38917831--38919478 Score: 2446
Period size: 132 Copynumber: 12.5 Consensus size: 132
38917821 NNNNNNNNNN
* *
38917831 TCTACAATTTTCAACCCACTCCGCTGCTGCTCAAGGAGACAAGCCTTGGTGACTTAAATCTGCTT
1 TCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTT
* * * *
38917896 CCCACT-TGCTTGGAAAGATAAGATATGCCGCCTTCAATCTGCTCCACTACTGCTTAGGGAGATA
66 CCCACTAT-CTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
38917960 AGA
130 AGA
* *
38917963 TCTACAATTTTCAACCCACTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGACTTAAATCTGCTA
1 TCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTT
* *
38918028 CCCACTATCTTGGAAGGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTA-GGAGATAA
66 CCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
*
38918092 AA
131 GA
* * *
38918094 TCTACAATTTTTCAACCCACTCCGCTGCTGCTCTGGGAGACAAGGCTTGGTGGCTTAAATCTACT
1 TCTACAA-TTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCT
* ** *
38918159 TCCCACTATCCTGGAAAGAGCAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
65 TCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
38918224 AGA
130 AGA
* ** * * * *
38918227 TCTACAATTTTCAACACACTCCATTGCTG-TAAGGGGGACAATGCTTGGTGACTTAAATCTGTTT
1 TCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTT
* * * *
38918291 CACACTATGTTGGAAAGATAAGATTTGCCGTCTTCGGTCTGCTCCACTACTGCTTAGGGAGATAA
66 CCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
38918356 GA
131 GA
* * * * * * * *
38918358 TCTACAATTTTCAACCTACTCCGCCGCTGGTTAGGGGGACAAGGCTAGGTGGCTTAAATTTGCTT
1 TCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGC-T
* * *
38918423 TCCC-CTATCTTGGAAATATAAGATTTGTCGTCTTCGATCAGCTTCACTACTGCTTAGGGAGATA
65 TCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
38918487 AGA
130 AGA
* * *
38918490 TCTATAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAATGCTTGGTGATTTAAATCTGCTT
1 TCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTT
* *
38918555 CCCACTATGTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTAATGCTTAGGGAGATAA
66 CCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
38918620 GA
131 GA
* * * *
38918622 ACTAAAATTTTCAACCCATTCCGCTGCTGCTCAGGGAGACAATGCTTGGTGACTTAAATCTGCTT
1 TCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTT
** * * * * * *
38918687 CCCACTAAGTTCGAAAGATAAAATTTGTCTTCTTCGATCTGCTCCACCAGTGCTTAGGGAGAGAA
66 CCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
38918752 GA
131 GA
* * *
38918754 TCTACAATTTTCTACCCACTCCGCTCCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTT
1 TCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTT
* *
38918819 CCCACTATCTTGGAAAGATAAGACTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
66 CCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
38918884 GA
131 GA
* *
38918886 TCTAAAATTTTCAACCCACTACGCTGCTGCTCAGGGAGACAAGGCTTGGT-AGCTTAAATCTGCT
1 TCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGA-CTTAAATCTGCT
* **
38918950 TCCCACTATCTTGGAAAGATAAGATTTGTTGTCTTCGATCTGCTCCACTACAACTTAGGGAGATA
65 TCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
38919015 AGA
130 AGA
* * *
38919018 TCTACAATTTTCAACCCACTCCGCTGCTGCTCAGTGAGACAATGCTTGGTGAGTTAAATCTGCTT
1 TCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTT
* * **
38919083 CCCGCTATCTTGGAAAGATAAGATTTGTTGTCTTCGATCTGCTCCAAAACTGCTTAGGGAGATAA
66 CCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
38919148 GA
131 GA
*
38919150 TCTACAATTTTCAACCCACTCCGCTGCTGCT-AGAGGAGACAAGCCTTGGTGACTTAAATCTGCT
1 TCTACAATTTTCAACCCACTCCGCTGCTGCTCAG-GGAGACAAGGCTTGGTGACTTAAATCTGCT
* *
38919214 TCCCACT-TGCTTGGAAAGATAAGATATGTTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAT
65 TCCCACTAT-CTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAT
38919278 AAGA
129 AAGA
* * *
38919282 TCTACAATTTTCAACCCACTCCACTGCTGCTCAGTGAGACAATGCTTGGTGACTTAAATCTGCTT
1 TCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTT
* *
38919347 CCCACTATCTTGGAAAGATAAGATTTGTTGTCTTCGATCTGCTCCACAACTGCTTAGGGAGATAA
66 CCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
38919412 GA
131 GA
*
38919414 TCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTT
1 TCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTT
38919479 NNNNNNNNNN
Statistics
Matches: 1369, Mismatches: 135, Indels: 24
0.90 0.09 0.02
Matches are distributed among these distances:
131 137 0.10
132 1207 0.88
133 25 0.02
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (132 bp):
TCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTT
CCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAA
GA
Found at i:38919278 original size:44 final size:43
Alignment explanation
Indices: 38919098--38919414 Score: 108
Period size: 44 Copynumber: 7.2 Consensus size: 43
38919088 TATCTTGGAA
* **
38919098 AGATAAGATTTGTTGTCTTCGATCTGCTCCAAAACTGCTTAGGG
1 AGATAAGA-TTGTTGTCTTCAATCTGCTCCACTACTGCTTAGGG
**** * * ** * *
38919142 AGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGC-TAGAGG
1 AGATAAGAT-TGTTGTCTTCAATCTGCTCCACTACTGCTTAG-GG
* * * * * *
38919186 AGACAAGCCTTGGTGACTTAAATCTGCTTCC-C-ACTTGCTT-GGAA
1 AGATAAG-ATTGTTGTCTTCAATCTGC-TCCACTAC-TGCTTAGG-G
*
38919230 AGATAAGATATGTTGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGAT-TGTTGTCTTCAATCTGCTCCACTACTGCTTAGGG
**** * * ** * * *
38919274 AGATAAGATCTACAATTTTCAACCCACTCCACTGCTGCTCAGTG
1 AGATAAGAT-TGTTGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * *
38919318 AGACAATGCTTGGTGACTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTGTTGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* *
38919362 AGATAAGATTTGTTGTCTTCGATCTGCTCCACAACTGCTTAGGG
1 AGATAAGA-TTGTTGTCTTCAATCTGCTCCACTACTGCTTAGGG
38919406 AGATAAGAT
1 AGATAAGAT
38919415 CTACAATTTT
Statistics
Matches: 183, Mismatches: 71, Indels: 39
0.62 0.24 0.13
Matches are distributed among these distances:
42 5 0.03
43 15 0.08
44 143 0.78
45 15 0.08
46 5 0.03
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (43 bp):
AGATAAGATTGTTGTCTTCAATCTGCTCCACTACTGCTTAGGG
Found at i:38923295 original size:132 final size:132
Alignment explanation
Indices: 38923056--38924008 Score: 1444
Period size: 132 Copynumber: 7.2 Consensus size: 132
38923046 NNNNNNNNNN
* * * * * *
38923056 TTCCCACTATCTTGGAAAGCTAAGATCTCCCGTCTTCCATCCGCTCCCACTACTGCTCA-GGAGA
1 TTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCT-CCACTACTGCTTAGGGAGA
* *
38923120 TAAGATCTACAATTTTCAACCCACTCTGCTGCTGCTCAGGGAGACAAGGCTGGGTGACTTAAATC
65 TAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATC
38923185 TGC
130 TGC
* * * * *
38923188 TTCCCCATTATCTCGGAATGATAAGATTTGCCATCTTCGATCTGCTGCACTACTGCTTAGGGAGA
1 TT-CCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGA
* * * *
38923253 TATGATCTACAATTTTC-ACCCACACCGCTGCTGCTCAGGGAGACAATGTTTGGTGACTTAAATC
65 TAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATC
38923317 TGC
130 TGC
* * * * *
38923320 TTCTCACTATCTTGGGAAGATAAGATTTGTCGTCTTCGATCAGCTCTACTACTGCTTAGGGAGAT
1 TTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAT
* *
38923385 AAGATCTACAATTTTCAACCCACTCCGATGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCT
66 AAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCT
38923450 GC
131 GC
* *
38923452 GTCCCACTATCTTGGAAAGATAAAATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAT
1 TTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAT
*
38923517 AAGATCTACAATTTTCAACCCACTCCGCTACTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCT
66 AAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCT
38923582 GC
131 GC
* * * *
38923584 TTCCCACTAT-TTGGGAAAGATAAGATTTGCCGTCTTCGATATGCACTACTATTGCTTAGGGAGA
1 TTCCCACTATCTT-GGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGA
* * * *
38923648 TAAGATCTATAATTTTTAACCCACTCCGCTGCTGTTCAGGGAGACAATGCTTGGTGACTTAAATC
65 TAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATC
*
38923713 TGT
130 TGC
* * *
38923716 TTCCCACTATGTTGGAAAGATAAAATTTGCCGTCTTCGATCTGATCCACTACTGCTTAGGGAGAT
1 TTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAT
* *
38923781 AAGATCTACAATTTTCAACCTACTCTGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCT
66 AAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCT
38923846 GC
131 GC
* *
38923848 TTCCCATTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGGTTAGGGAGAT
1 TTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAT
38923913 AAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCT
66 AAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCT
38923978 GC
131 GC
* *
38923980 TTCCCATTATCTTTGAAAAGATAAGATTT
1 TTCCCACTATC-TTGGAAAGATAAGATTT
38924009 TACATCTTCG
Statistics
Matches: 739, Mismatches: 76, Indels: 11
0.89 0.09 0.01
Matches are distributed among these distances:
131 70 0.09
132 596 0.81
133 73 0.10
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (132 bp):
TTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAT
AAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCT
GC
Found at i:38928480 original size:132 final size:132
Alignment explanation
Indices: 38928232--38929083 Score: 1310
Period size: 132 Copynumber: 6.4 Consensus size: 132
38928222 NNNNNNNNAT
* * *
38928232 GCTTGGTGACTTAAATCTGTTTCCCACTATGTTGGAAAGATAAAATTTGCCGTCTTCGATCTGCT
1 GCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCT
* * **
38928297 CCACTACTGCTTAGGGAGATAAGATCTATAATTTTCAACCTACTCTACTGCTGCTCAGGGAGACA
66 CCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACA
38928362 AG
131 AG
* * * * * * *
38928364 GCTTGGTGACTTAAATCTGCTTCCCATTACCTTGGAAAGATAAGATTTTCCATCATCGTTCTGCA
1 GCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCT
*
38928429 CCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACACCGCTGCTGCTCAGGGAGACA
66 CCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACA
*
38928494 AT
131 AG
* * * *
38928496 GTTTGGTGACTTAAATCTGCTTCCCACTATTTTGGAAAGA-AAGATTTACCCGTCATCGATCTGC
1 GCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTT-GCCGTCTTCGATCTGC
38928560 TCCACTACTGCCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCCTGCTGCTCAGGGAG
65 TCCACTACTG-CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCG-CTGCTGCTCAGGGAG
38928625 ACAAG
128 ACAAG
* * *
38928630 GCTTGGTCACTTAAATCTGCTTCCCACTATTTTGGAAAAGATAAGATTTGTCGTCTTCGATCTGC
1 GCTTGGTGACTTAAATCTGCTTCCCACTATCTTGG-AAAGATAAGATTTGCCGTCTTCGATCTGC
* *
38928695 TCCACTATTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTTCGCTGCTGCTCAGGGAGAC
65 TCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGAC
38928760 AAG
130 AAG
* * * *
38928763 GCTTGGTGGCCTAAATCTGCTTTCCACTATCTTGGAAAGATAAGATTTACCGTCTTCGATCTGCT
1 GCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCT
38928828 CCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACA
66 CCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACA
38928893 AG
131 AG
* *
38928895 GCTTGGTGACTTAAATCTGCTTCCCATTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTGCT
1 GCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCT
* **
38928960 GCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACAACGCTGCTGCTCAGGGAGACA
66 CCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACA
*
38929025 AT
131 AG
* * * *
38929027 GTTTGGTGACTTAAATCTGCTTCTCACTATCTTGGGAAGATAAGATTTGTCGTCTTC
1 GCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTC
38929084 CCACTATCTT
Statistics
Matches: 657, Mismatches: 58, Indels: 10
0.91 0.08 0.01
Matches are distributed among these distances:
131 7 0.01
132 440 0.67
133 87 0.13
134 89 0.14
135 27 0.04
136 7 0.01
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.31
Consensus pattern (132 bp):
GCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCT
CCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACA
AG
Found at i:38929117 original size:34 final size:34
Alignment explanation
Indices: 38929046--38929117 Score: 108
Period size: 34 Copynumber: 2.1 Consensus size: 34
38929036 CTTAAATCTG
* * * *
38929046 CTTCTCACTATCTTGGGAAGATAAGATTTGTCGT
1 CTTCCCACTATCTTGGAAAGATAAGATTTGCCAT
38929080 CTTCCCACTATCTTGGAAAGATAAGATTTGCCAT
1 CTTCCCACTATCTTGGAAAGATAAGATTTGCCAT
38929114 CTTC
1 CTTC
38929118 GATCTGCTTC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (34 bp):
CTTCCCACTATCTTGGAAAGATAAGATTTGCCAT
Found at i:38929151 original size:210 final size:210
Alignment explanation
Indices: 38928909--38929293 Score: 655
Period size: 210 Copynumber: 1.8 Consensus size: 210
38928899 GGTGACTTAA
* *
38928909 ATCTGCTTCCCATTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTGCTGCACTACTGCTTAG
1 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAG
* *
38928974 GGAGATAAGATCTACAATTTTCAACCCACAACGCTGCTGCTCAGGGAGACAATGTTTGGTGACTT
66 GGAGATAAGATCTACAATTTTCAACCCACAACGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTT
* *
38929039 AAATCTGCTTCTCACTATCTTGGGAA-GATAAGATTTGTCGTCTTCCCACTATCTTGGAAAGATA
131 AAATCTACTTCCCACTATCTT-GGAAGGATAAGATTTGTCGTCTTCCCACTATCTTGGAAAGATA
38929103 AGATTTGCCATCTTCG
195 AGATTTGCCATCTTCG
38929119 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAG
1 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAG
** *
38929184 GGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTT
66 GGAGATAAGATCTACAATTTTCAACCCACAACGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTT
* *
38929249 AAATCTACTTCCCCCTATCTTGGAAGGATAATATTTGTCGTCTTC
131 AAATCTACTTCCCACTATCTTGGAAGGATAAGATTTGTCGTCTTC
38929294 GATTTGCTCC
Statistics
Matches: 163, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
209 4 0.02
210 159 0.98
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (210 bp):
ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAG
GGAGATAAGATCTACAATTTTCAACCCACAACGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTT
AAATCTACTTCCCACTATCTTGGAAGGATAAGATTTGTCGTCTTCCCACTATCTTGGAAAGATAA
GATTTGCCATCTTCG
Found at i:38929194 original size:44 final size:44
Alignment explanation
Indices: 38929080--38929169 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
38929070 GATTTGTCGT
38929080 CTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTG
1 CTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTG
38929124 CTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTG
1 CTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTG
38929168 CT
1 CT
38929170 CCACTACTGC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (44 bp):
CTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTG
Found at i:38929221 original size:474 final size:475
Alignment explanation
Indices: 38928644--38929499 Score: 1500
Period size: 474 Copynumber: 1.8 Consensus size: 475
38928634 GGTCACTTAA
* * * *
38928644 ATCTGCTTCCCACTATTTTGGAAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTATTGCTTA
1 ATCTGCTTCCCACTATCTTGGAAAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTA
*
38928709 GGGAGATAAGATCTACAATTTTCAACCCACTTCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCC
66 GGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCC
* *
38928774 TAAATCTGCTTTCCACTATCTTGGAAAGATAAGATTTACCGTCTTCGATCTGCTCCACT-ACTGC
131 TAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTACCGTCTTCGATCTGCTCCA-TGACTGC
*
38928838 TTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTG
195 TTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAAGCTTGGTG
* *
38928903 ACTTAAATCTGCTTCCCATTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTGCTGCACTACT
260 ACTTAAATCTGCTTCCCATTATCTTGGAAAGATAAGATTTGCCACCTTCGATCTGCTCCACTACT
38928968 GCTTAGGGAGATAAGATCTACAATTTTCAACCCACAACGCTGCTGCTCAGGGAGACAATGTTTGG
325 GCTTAGGGAGATAAGATCTACAATTTTCAACCCACAACGCTGCTGCTCAGGGAGACAATGTTTGG
38929033 TGACTTAAATCTGCTTCTCACTATCTTGGGAAGATAAGATTTGTCGTCTTCCCACTATCTTGGAA
390 TGACTTAAATCTGCTTCTCACTATCTTGGGAAGATAAGATTTGTCGTCTTCCCACTATCTTGGAA
38929098 AGATAAGATTTGCCATCTTCG
455 AGATAAGATTTGCCATCTTCG
38929119 ATCTGCTTCCCACTATCTTGG-AAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTA
1 ATCTGCTTCCCACTATCTTGGAAAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTA
*
38929183 GGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCC
* * * ** *
38929248 TAAATCTACTTCCCCCTATCTTGGAAGGATAATATTTGTCGTCTTCGATTTGCTCCATGACTGCT
131 TAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTACCGTCTTCGATCTGCTCCATGACTGCT
38929313 TAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAAGCTTGGTGA
196 TAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAAGCTTGGTGA
* *
38929378 CTTAAATCTGCTTCCCATTATTTTGGAAAGATAAGATTTGCCGCCTTCGATCTGCTCCACTACTG
261 CTTAAATCTGCTTCCCATTATCTTGGAAAGATAAGATTTGCCACCTTCGATCTGCTCCACTACTG
**
38929443 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAA
326 CTTAGGGAGATAAGATCTACAATTTTCAACCCACAACGCTGCTGCTCAGGGAGACAA
38929500 GNNNNNNNNN
Statistics
Matches: 359, Mismatches: 21, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
473 1 0.00
474 338 0.94
475 20 0.06
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.30
Consensus pattern (475 bp):
ATCTGCTTCCCACTATCTTGGAAAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTA
GGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCC
TAAATCTACTTCCCACTATCTTGGAAAGATAAGATTTACCGTCTTCGATCTGCTCCATGACTGCT
TAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAAGCTTGGTGA
CTTAAATCTGCTTCCCATTATCTTGGAAAGATAAGATTTGCCACCTTCGATCTGCTCCACTACTG
CTTAGGGAGATAAGATCTACAATTTTCAACCCACAACGCTGCTGCTCAGGGAGACAATGTTTGGT
GACTTAAATCTGCTTCTCACTATCTTGGGAAGATAAGATTTGTCGTCTTCCCACTATCTTGGAAA
GATAAGATTTGCCATCTTCG
Found at i:38929361 original size:132 final size:132
Alignment explanation
Indices: 38929119--38929500 Score: 640
Period size: 132 Copynumber: 2.9 Consensus size: 132
38929109 GCCATCTTCG
*
38929119 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAG
1 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAG
*
38929184 GGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTT
66 GGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTT
38929249 AA
131 AA
* * * * * *
38929251 ATCTACTTCCCCCTATCTTGGAAGGATAATATTTGTCGTCTTCGATTTGCTCCA-TGACTGCTTA
1 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACT-ACTGCTTA
*
38929315 GGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAAGCTTGGTGACT
65 GGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACT
38929380 TAA
130 TAA
* * *
38929383 ATCTGCTTCCCATTATTTTGGAAAGATAAGATTTGCCGCCTTCGATCTGCTCCACTACTGCTTAG
1 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAG
38929448 GGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAG
66 GGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAG
38929501 NNNNNNNNNN
Statistics
Matches: 229, Mismatches: 19, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
131 1 0.00
132 227 0.99
133 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (132 bp):
ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAG
GGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTT
AA
Found at i:38929411 original size:342 final size:342
Alignment explanation
Indices: 38928777--38929417 Score: 1077
Period size: 342 Copynumber: 1.9 Consensus size: 342
38928767 GGTGGCCTAA
* *
38928777 ATCTGCTTTCCACTATCTTGGAAAGATAAGATTTACCGTCTTCGATCTGCTCCACTACTGCTTAG
1 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTACCATCTTCGATCTGCTCCACTACTGCTTAG
38928842 GGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTT
66 GGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTT
* * *
38928907 AAATCTGCTTCCCATTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTGCTGCACTACTGCTT
131 AAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTT
* *
38928972 AGGGAGATAAGATCTACAATTTTCAACCCACAACGCTGCTGCTCAGGGAGACAATGTTTGGTGAC
196 AGGGAGATAAGATCTACAATTTTCAACCCACAACGCTGCTGCTCAGGGAGACAAAGCTTGGTGAC
* *
38929037 TTAAATCTGCTTCTCACTATCTTGGGAAGATAAGATTTGTCGTCTTCCCACTATCTTGGAAAGAT
261 TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCCCACTATCTTGGAAAGAT
38929102 AAGATTTGCCATCTTCG
326 AAGATTTGCCATCTTCG
*
38929119 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAG
1 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTACCATCTTCGATCTGCTCCACTACTGCTTAG
*
38929184 GGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTT
66 GGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTT
* * * * * *
38929249 AAATCTACTTCCCCCTATCTTGGAAGGATAATATTTGTCGTCTTCGATTTGCTCCA-TGACTGCT
131 AAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTGCTCCACT-ACTGCT
**
38929313 TAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAAGCTTGGTGA
195 TAGGGAGATAAGATCTACAATTTTCAACCCACAACGCTGCTGCTCAGGGAGACAAAGCTTGGTGA
* *
38929378 CTTAAATCTGCTTCCCATTATTTTGGAAAGATAAGATTTG
260 CTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTG
38929418 CCGCCTTCGA
Statistics
Matches: 277, Mismatches: 21, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
341 1 0.00
342 276 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.31
Consensus pattern (342 bp):
ATCTGCTTCCCACTATCTTGGAAAGATAAGATTTACCATCTTCGATCTGCTCCACTACTGCTTAG
GGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTT
AAATCTACTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTT
AGGGAGATAAGATCTACAATTTTCAACCCACAACGCTGCTGCTCAGGGAGACAAAGCTTGGTGAC
TTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCCCACTATCTTGGAAAGAT
AAGATTTGCCATCTTCG
Found at i:38932646 original size:132 final size:132
Alignment explanation
Indices: 38932409--38933793 Score: 2108
Period size: 132 Copynumber: 10.5 Consensus size: 132
38932399 NNNNNNNNNN
* * *
38932409 TGCTGCTCAGGGAGACAATGTTTGGTGACTTAAATCTGCTTCTCACTATCTTGGAAAGATAAGAT
1 TGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGAT
*
38932474 TTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCC
66 TTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCC
38932539 GC
131 GC
*
38932541 TGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGAT
1 TGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGAT
* *
38932606 TTACCGTCTTCGATCTGCTCCACTACTCCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCC
66 TTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCC
*
38932671 CC
131 GC
* * ** *
38932673 TGCTGCTTAGGGAGACAAGGCTT-GTGTCTTAAATCACCTTCCCACTATCTTGGAAATATAAGAT
1 TGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGAT
* *
38932737 GTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCTACTCC
66 TTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCC
38932802 GC
131 GC
* *
38932804 TGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCATTATATTGGAAAGATAAGAT
1 TGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGA-
* * *
38932869 TTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCGACAATTTTCAACCCACTA
65 TTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTC
38932934 CGC
130 CGC
* * *
38932937 TGCTGCTTAGGGAGACAAGGCTTGGTGGCTTAAATATGCTTCCCACTATCTTGGAAAGATAAGAT
1 TGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGAT
* * * *
38933002 TTGCCATCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTACAATTTTCAAGCCACACC
66 TTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCC
38933067 GC
131 GC
* * *
38933069 TGCTGCTCAGGGAGACAATGTTTGGTGACTTAAATCTGCTTCCCACTATTTTGGAAAGATAAGAT
1 TGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGAT
* * * * *
38933134 TTACCGTCATCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTACAATTTCCAACCTACTCC
66 TTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCC
*
38933199 GT
131 GC
* *
38933201 TGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCCCTATTTTGGAAAGATAAGAT
1 TGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGAT
* * * * * *
38933266 TTACCGTCTTCGATCTGCACTACTATTCCTTAGGGAGATAAGATCTATAATTTTCAACCCACTCC
66 TTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCC
38933331 GC
131 GC
* * * * * *
38933333 TGCTGCTCAGGGAGGCAATGTTTGGTGACTTAAATCTGTTTCCCACTATGTTGGAAAGATAAAAT
1 TGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGAT
* *
38933398 TTTCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTTAACCCACTCC
66 TTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCC
38933463 GC
131 GC
*
38933465 TGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCATTATCTTGGAAAGATAAGAT
1 TGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGAT
* * * *
38933530 TTGCCATCTTCGATCTGCTGCACTACTGCTTAGGGAGATAAGATCTACAAATTTTTAACCCACAC
66 TTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTAC-AATTTTCAACCCACTC
38933595 CGC
130 CGC
* * * *
38933598 TGCTGCTCAGGGAGACAATGTTTGGTGACTTAAATCTGCTTCCCACGATTTTGGAAAGATAAGAT
1 TGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGAT
* * * *
38933663 TTACCCTCTTCGATCTTCTCCACTACTGCTTAGGGAGATAAGATCTACTATTTTCAACCCACTCC
66 TTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCC
38933728 GC
131 GC
* * * *
38933730 TTGTTGCTCAGGGAGACAAGGGTTTGTGACTTAAATCTGCTTTCCACTAT-TTGGAAAGATAAGA
1 -TGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGA
38933794 NNNNNNNNNN
Statistics
Matches: 1137, Mismatches: 112, Indels: 8
0.90 0.09 0.01
Matches are distributed among these distances:
131 121 0.11
132 729 0.64
133 287 0.25
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.31
Consensus pattern (132 bp):
TGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGAT
TTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCC
GC
Found at i:38944031 original size:132 final size:132
Alignment explanation
Indices: 38943794--38945244 Score: 2348
Period size: 132 Copynumber: 11.0 Consensus size: 132
38943784 NNNNNNNNNN
* **
38943794 AATCTGCTTCCCACTATGTTATAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTA
* *
38943859 GGAAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCTGGGAGAC-AGTGCTTGGTGAC
66 GGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAG-GCTTGGTGAC
38943923 TTA
130 TTA
* *
38943926 AATCTGCTTCCCACTATGC-TGGAAAGATAAGATTTACCGTCTTCGATCTGCTCCACTACAGCTT
1 AATCTGCTTCCCACTAT-CTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTT
*
38943990 AGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGC
65 AGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGAC
38944055 TTA
130 TTA
* * *
38944058 AATCTTCTTCCCTCTATCTTGGAAAGATAACATTTGCCGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTA
*
38944123 GGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACT
38944188 TA
131 TA
38944190 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTGCCACTACTGCTT
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCT-CCACTACTGCTT
* *
38944255 AGGAAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAAGACAAAGACTTGGTG
65 AGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGG-AGAC-AAGGCTTGGTG
*
38944320 TCTTA
128 ACTTA
* * * *
38944325 AATCTACTTCCCCCTATCTTGAGAAAGATAAGATTTGTCATCTTCGATCTGCTCCACTACTGCTT
1 AATCTGCTTCCCACTATCTTG-GAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTT
38944390 AGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGAC
65 AGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGAC
38944455 TTA
130 TTA
38944458 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTA
* *
38944523 GGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAATGTTTGGTGACT
66 GGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACT
38944588 TA
131 TA
* * * **
38944590 AATCTGCTTCCCACTATTTTTGTAAGATAAGATTTATCGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTA
*
38944655 GGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTAAGGGAGACAAGGCTTGGTGACT
66 GGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACT
38944720 TA
131 TA
* * * *
38944722 AATCTGCTTTCCACTATTTTGGAAAGATAAGATTTGCCGTGTTCGATCTGCTCCACTATTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTA
* *
38944787 GGGAGATAAGATCTACAATTTTCAATCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACT
38944852 TA
131 TA
* * * * *
38944854 AATCTCCTTTCCACTATCTTGGAAATATAAGATTTACCGTCTTCGATCTGCTCCACTACTACTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTA
*
38944919 GGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGGCAAGGCTTGGTGACT
66 GGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACT
38944984 TA
131 TA
* * * * *
38944986 AATCTACTTCCCATTATATTGGAAAGATAAGATTTGCCATCTTCGATCTGCTGCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTA
* * * *
38945051 GGGAGATAAGATCTACAATTTTCAACCCACACCGCTGCTGCTCAGGGAGACAATGTTTGGTCACT
66 GGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACT
38945116 TA
131 TA
* * * *
38945118 AATCTTCTTCTCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTACACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTA
* *
38945183 GGGAGATAAGATCTACAATTTTCAACCCACTCTGCTGCTGCTCAGGGAGACAAGTCTTGGTG
66 GGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTG
38945245 NNNNNNNNNN
Statistics
Matches: 1225, Mismatches: 87, Indels: 14
0.92 0.07 0.01
Matches are distributed among these distances:
131 1 0.00
132 1001 0.82
133 94 0.08
134 8 0.01
135 92 0.08
136 29 0.02
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (132 bp):
AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTA
GGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACT
TA
Found at i:38944530 original size:44 final size:44
Alignment explanation
Indices: 38943818--38944930 Score: 181
Period size: 44 Copynumber: 25.2 Consensus size: 44
38943808 TATGTTATAA
* *
38943818 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGA
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * ** * *
38943862 AGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCT-GGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCT-TAGGG
* ** * * *
38943906 AGA-CAG-TGCTTGGTGACTTAAATCTGCTTCCCACTA-TGC-T-GGAA
1 AGATAAGAT--TTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* * *
38943950 AGATAAGATTTACCGTCTTCGATCTGCTCCACTACAGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * ** * * *
38943994 AGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** ** * * * * *
38944038 AGACAAGGCTTGGTGGCTTAAATCTTCTTCC-CT-CTATCTT-GGAA
1 AGATAAGATTTGCCGTCTTCAATCTGC-TCCACTACT-GCTTAGG-G
* *
38944082 AGATAACATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * ** * * *
38944126 AGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** ** * * *
38944170 AGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* *
38944214 AGATAAGATTTGCCGTCTTCGATCTGCTGCCACTACTGCTTAGGA
1 AGATAAGATTTGCCGTCTTCAATCTGCT-CCACTACTGCTTAGGG
* * ** * * ** * * *
38944259 AGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * **
38944303 AAGACAAAGACTTGGTGTCTTAAATCTACTTCCCCCTA-T-CTTGAGAA
1 -AGA-TAAGATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTT-AGGG
* * *
38944350 AGATAAGATTTGTCATCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * ** * * *
38944394 AGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** ** * * *
38944438 AGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
*
38944482 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * ** * * *
38944526 AGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * * * **
38944570 AGACAATG-TTTGGTGACTTAAATCTGCTTCCCACTA-T-TTTTGTA
1 AGATAA-GATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGGG
** *
38944614 AGATAAGATTTATCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * ** * * *
38944658 AGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTAAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** ** * * * *
38944702 AGACAAGGCTTGGTGACTTAAATCTGCTTTCCACTA-T--TTTGGAA
1 AGATAAGATTTGCCGTCTTCAATCTGC--TCCACTACTGCTTAGG-G
* * *
38944746 AGATAAGATTTGCCGTGTTCGATCTGCTCCACTATTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * ** * * *
38944790 AGATAAGATCTACAATTTTCAATCCACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** ** * * * *
38944834 AGACAAGGCTTGGTGGCTTAAATCTCCTTTCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTCAATCTGC--TCCACTACTGCTTAGG-G
* * * *
38944878 ATATAAGATTTACCGTCTTCGATCTGCTCCACTACTACTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
38944922 AGATAAGAT
1 AGATAAGAT
38944931 CTACAATTTT
Statistics
Matches: 693, Mismatches: 322, Indels: 108
0.62 0.29 0.10
Matches are distributed among these distances:
42 33 0.05
43 43 0.06
44 484 0.70
45 78 0.11
46 47 0.07
47 4 0.01
48 4 0.01
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (44 bp):
AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
Found at i:38946834 original size:132 final size:132
Alignment explanation
Indices: 38946597--38951866 Score: 7181
Period size: 132 Copynumber: 39.8 Consensus size: 132
38946587 NNNNNNNNNN
* * *
38946597 AAGATTTGCCCTCTTCGATCTGCTGCACTACTGCTTAGGGAGATAAGATCGACAATTTTCAACCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* * * * * * *
38946662 ACACCGCTGTTGCTCAGGGAGATAATGTTTGGTGACTTAAATCTGCTTCTCACTATCTTGGGAAG
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAG
38946727 AT
131 AT
* *
38946729 AAGATTTGTCGTCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* * *
38946794 ACTCCGCTGCTGCTCAGGGAGACATGGCTTGGTGACTTAAATCTGCCTCCCACTATCTTGGAAAT
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAG
38946859 AT
131 AT
38946861 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* * * *
38946926 CCTCCGCTGCTGCTCAGGGAGCCAAGGCTTGCTGGCTTAAATCTGCTTCCCACTATCTTGGAAAG
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAG
38946991 AT
131 AT
*
38946993 AAGATTTGCCGTATTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* *
38947058 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCTCTATCTTCGGAAA
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTT-GGAAA
38947123 GAT
130 GAT
* * * *
38947126 AACATTTGCCGTCTTCGATTTGCTCCACTACTGCTTAGGAAGATAAGATCTACAATTTTCAAGCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
*
38947191 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAG
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAG
38947256 AT
131 AT
* * *
38947258 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTCGGAAGATAAGATCTTCAATTTTCAACCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* * * * * * *
38947323 ACTCTGCAGCTGCTCAGGGTGACAAGGCTTTGTCACGTAAATCTGCTTCCCACTATCTTGGAAAT
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAG
38947388 AT
131 AT
* * * *
38947390 AACATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATTTTAAACCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* * *
38947455 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTTGTGACTTAAATATGCTTCCCACTATCTTGGAAAT
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAG
38947520 AT
131 AT
* * * *
38947522 AAGATTTGTCGCCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTACAATTTTCAGCCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* * *
38947587 ACTCCGCTGCTGCTTAGGGAGACAAGGCTTGTTGACTTAAAT-TATCTTCCCACTATCTTGGAAA
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCT-GCTTCCCACTATCTTGGAAA
38947651 GAT
130 GAT
* *
38947654 AAGATTTGCCATCTTCGATCAGCTCCACTACTGCTTAGGGAGATAAGATCTACAA-TTTCAACCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* * * *
38947718 ACTCCGCTGCTGCTCAGGGAGATAATGTTTGGTGACTTAAATCTGCTTCCCACTATGTTGGAAAG
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAG
38947783 AT
131 AT
* * * * * * * *
38947785 AAAATTTGTCATCTTCGATCTGCTCTACTACTACTTAGGGAGATAAAATATACAATTTTCAACCT
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* * * *
38947850 ACTCCGCTCCTGCTCAGGGAGACAAGGGTTGGTGGCTTAAATCTGCTTCCCACTTTCTTGGAAAG
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAG
38947915 AT
131 AT
38947917 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
38947982 ACTCCGCTGCTGCTCAGGGAGAC-AGTGCTTGGTGACTTAAATCTGCTTCCCACTATGC-TGGAA
66 ACTCCGCTGCTGCTCAGGGAGACAAG-GCTTGGTGACTTAAATCTGCTTCCCACTAT-CTTGGAA
38948045 AGAT
129 AGAT
* *
38948049 AAGATTTACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAAGCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* * *
38948114 ACTCCGCTGCTGCTCAGGGAGACAATGCTTGGTGACTTAAATATTCTTCCCACTATCTTGGAAAG
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAG
38948179 AT
131 AT
38948181 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* *
38948246 ACTCCGCTGCTGCTCAGGGACACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAG
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAG
38948311 AT
131 AT
38948313 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
*
38948378 ACTCCGCTGCTGCTCAGGGAGAC-AGTGCTTGGTGACTTAAATTTGCTTCCCACTATGC-TGGAT
66 ACTCCGCTGCTGCTCAGGGAGACAAG-GCTTGGTGACTTAAATCTGCTTCCCACTAT-CTTGGA-
38948441 AAGAT
128 AAGAT
* *
38948446 AAAATTTACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* * *
38948511 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTTCTTCCCTCTATCTTGGAAAG
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAG
38948576 AT
131 AT
* *
38948578 AACATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACAC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* *
38948643 ACTCCGCTGCTGCAT-AGAGAGACAAGGCTTGGTGCCTTAAATCTGCTTCCCACTATCTTGGAAA
66 ACTCCGCTGCTGC-TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAA
38948707 GAT
130 GAT
* *
38948710 AAGGTTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGAAAAGATCTACAATTTTCAACCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* * * * * *
38948775 ACTCCGCTGCTGCTTAGGGAGAAAAGGCTTCGTGGCTTAAATCTACTTCCCCCTATCTTGGAAAG
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAG
38948840 AT
131 AT
* * * * *
38948842 AAGATTTGTCGTCCTCAATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACAAGTTTCAACCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* * *
38948907 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTTGTAACTTAAATCTGCTTTCCACTATCTTGGAAAG
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAG
38948972 AT
131 AT
* *
38948974 AAGATTTGCCGCCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATATA-ATATTTTCAACC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACA-ATTTTCAACC
* *
38949038 CACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTACTTCCCATTATCTTGGAAA
65 CACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAA
38949103 GAT
130 GAT
* * * * *
38949106 AAAATTTGCCCTTTTCGATCTGCTCCACTACTGCATAGGGAGATAAGATCTACAATTTTCAACAC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* * * *
38949171 ACTCCGCTGCTGCTTAGGGAGAAAATG-TTCGGTGACTTAAATCTGCTTCCCCCTATCTTGGAAA
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTT-GGTGACTTAAATCTGCTTCCCACTATCTTGGAAA
38949235 GAT
130 GAT
* * *
38949238 AAGATTTGTCGTCTTCGATCTGCACCACTACTGCTTAGGGAGATAAGATCTATAATTTTCAA-CC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* *
38949302 ACTCCGCTGCTGCTCAGGGAGACAAAGG-TTAGTGGCTTAAATCTGCTTCCCACTATCTTGGAAA
66 ACTCCGCTGCTGCTCAGGGAGAC-AAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAA
*
38949366 GAA
130 GAT
*
38949369 AAGATTTGCCGTAC-TCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTACAATTTTTC-AC
1 AAGATTTGCCGT-CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAA-TTTTCAAC
* * *
38949432 CCACTCCGCTGCTGCTCAGGGAGACAATGCTTGGTGACTTAAATCTGCTTCCCACTATGTTAGAA
64 CCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAA
38949497 AGAT
129 AGAT
*
38949501 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTAC-ATTTTCAACCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
**
38949565 ACTCCGCTGCTGCTCA-GGAGAC-AGAGCTTGGTGACTTAAATCTGCTNNNNNNNNNNNNNNNNN
66 ACTCCGCTGCTGCTCAGGGAGACAAG-GCTTGGTGACTTAAATCTGCT---------------TC
******************
38949628 NNNNNNNNNNNNNNNNNN
115 CCACTATCTTGGAAAGAT
*****************************************************************
38949646 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* * *
38949711 ACTTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTTCTTCCCTCTATCTTGGAAA
66 AC-TCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAA
38949776 GAT
130 GAT
* * * *
38949779 AAAATTTGCCGTCTTCGATTTGCTCCACTACTGCTTAGGAAGATAAGATCTACAATTTTCAAGCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* *
38949844 ACTCCGCTGCTGCTCAGGGAGACAAGGCATGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAG
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAG
38949909 AT
131 AT
* * *
38949911 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTCGGAAGATAAGATCTTCAATTTTCAACCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* * * * * * *
38949976 ACTCTGCAGCTGCTCAGGGTGACAAGGCTTTGTCACGTAAATCTGCTTCCCACTATCTTGGAAAT
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAG
38950041 AT
131 AT
* * * * *
38950043 AACATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATGAGATCTTCAATTTTAAACCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* * *
38950108 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTTGTGACTTAAATATGCTTCCCACTATCTTGGAAAT
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAG
38950173 AT
131 AT
* * * *
38950175 AAGATTTGTCGCCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTACAATTTTCAGCCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* *
38950240 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGTTGACTTAAAT-TATCTTCCCACTATCTTGGAAA
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCT-GCTTCCCACTATCTTGGAAA
38950304 GAT
130 GAT
* *
38950307 AAGATTTGCCATCTTCGATCAGCTCCACTACTGCTTAGGGAGATAAGATCTACAA-TTTCAACCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* * * * *
38950371 ACTCCGCTGCTGCTCAGGGAGATAATGTTTGGTGACTTAAATCTGCTTTCCACTATGTTGGAAAG
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAG
38950436 AT
131 AT
* * * * * * * *
38950438 AAAATTTGTCATCTTCGATCTGCTCTACTACTACTTAGGGAGATAAAATATACAATTTTCAACCT
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* * * *
38950503 ACTCCGCTCCTGCTCAGGGAGACAAGGGTTGGTGGCTTAAATCTGCTTCCCACTTTCTTGGAAAG
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAG
38950568 AT
131 AT
38950570 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
*
38950635 ACTCCGCTGCTGCTCAGGGAGAC-AGTGCTTGGTGACTTAAATTTGCTTCCCACTATGC-TGGAA
66 ACTCCGCTGCTGCTCAGGGAGACAAG-GCTTGGTGACTTAAATCTGCTTCCCACTAT-CTTGGAA
38950698 AGAT
129 AGAT
38950702 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* * *
38950767 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAGATCTGCTTCCCTCTATCTTGGAAAG
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAG
38950832 AT
131 AT
* *
38950834 AACATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACAC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* *
38950899 ACTCCGCTGCTGCAT-AGAGAGACAAGGCTTGGTGCCTTAAATCTGCTTCCCACTATCTTGGAAA
66 ACTCCGCTGCTGC-TCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAA
38950963 GAT
130 GAT
* *
38950966 AAGGTTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTTCAATTTTCAACCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* * *
38951031 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTACTTCCCCCTATCTTGGAAAG
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAG
38951096 AT
131 AT
* * * * * *
38951098 AAGATTTGTCGTCCTCAATCTGCTCCACTACTGCTTAGGGAGATAGGATCTACAAGTTTCAACCT
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* * *
38951163 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTTGTGACTTAAATCTGTTTTCCACTATCTTGGAAAG
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAG
38951228 AT
131 AT
*
38951230 AAGATTTGCCG-CATTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATATA-ATATTTTCAAC
1 AAGATTTGCCGTC-TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACA-ATTTTCAAC
38951293 CCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTTATCTTGGA
64 CCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCAC-TATCTTGGA
38951358 AAGAT
128 AAGAT
*
38951363 AAGATTTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACA
1 AAGA-TTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACC
*
38951428 CACTCCGCTGCTGCTCAGGGAGAC-AGTGCTTCGGTGACTTAAATCTGCTTCCCCCTATCTTGGA
65 CACTCCGCTGCTGCTCAGGGAGACAAG-GCTT-GGTGACTTAAATCTGCTTCCCACTATCTTGGA
38951492 AAGAT
128 AAGAT
* * *
38951497 AAGATTTGTCGTCTTCGATCTGCACCACTACTGCTTAGGGAGATAAGATCTATAATTTTCAA-CC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* *
38951561 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTAGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAG
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAG
38951626 AT
131 AT
* * *
38951628 AAGATTTGTCGTATTCGATCTGCTCCACTACTGCTTAGGGAGATAAAATCTACAA-TTTCAACCC
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* * * * * *
38951692 ACTCCGCTTCTACTCAGGGAGATAATGTTTGGTGACTTAAATCTGCTTCCCACTATGTTGGAAAG
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAG
38951757 AT
131 AT
* * * * * * * *
38951759 AAAATTTGTCATCTTCGATCTGCTCTACTACTACTTAGGGAGATAAAATATACAATTTTCAACCT
1 AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
* * *
38951824 ACTCCGCTCCTGCTCAGGGAGACAAGGGTTGGTGGCTTAAATC
66 ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATC
38951867 NNNNNNNNNN
Statistics
Matches: 4529, Mismatches: 544, Indels: 130
0.87 0.10 0.02
Matches are distributed among these distances:
129 1 0.00
130 38 0.01
131 570 0.13
132 3416 0.75
133 335 0.07
134 102 0.02
135 24 0.01
146 2 0.00
147 14 0.00
148 25 0.01
149 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.29
Consensus pattern (132 bp):
AAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCC
ACTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAG
AT
Found at i:38947961 original size:44 final size:44
Alignment explanation
Indices: 38947650--38949022 Score: 184
Period size: 44 Copynumber: 31.2 Consensus size: 44
38947640 TATCTTGGAA
* * *
38947650 AGATAAGATTTGCCATCTTCGATCAGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * ** * * *
38947694 AGATAAGATCTACAAT-TTCAACCCACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
** * * *
38947737 AGATAATG-TTTGGTGACTTAAATCTGCTTCCCACTA-TG-TT-GGAA
1 AGATAA-GATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* * * * * *
38947781 AGATAAAATTTGTCATCTTCGATCTGCTCTACTACTACTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * ** * * * * * *
38947825 AGATAAAATATACAATTTTCAACCTACTCCGCTCCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** ** * * * *
38947869 AGACAAGGGTTGGTGGCTTAAATCTGCTTCC-C-ACTTTCTT-GGAA
1 AGATAAGATTTGCCGTCTTCAATCTGC-TCCACTAC-TGCTTAGG-G
*
38947913 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * ** * * *
38947957 AGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * *
38948001 AGA-CAG-TGCTTGGTGACTTAAATCTGCTTCCCACTA-TGC-T-GGAA
1 AGATAAGAT--TTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* *
38948045 AGATAAGATTTACCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * ** * * *
38948089 AGATAAGATCTACAATTTTCAAGCCACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * * * *
38948133 AGACAATG-CTTGGTGACTTAAATATTCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
*
38948177 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * ** * * *
38948221 AGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** ** * * *
38948265 ACACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
*
38948309 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * ** * * *
38948353 AGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * * *
38948397 AGA-CAG-TGCTTGGTGACTTAAATTTGCTTCCCACTA-TGC-T-GGATA
1 AGATAAGAT--TTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG--G
* * *
38948442 AGATAAAATTTACCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * ** * * *
38948486 AGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** ** * * * * *
38948530 AGACAAGGCTTGGTGGCTTAAATCTTCTTCC-CT-CTATCTT-GGAA
1 AGATAAGATTTGCCGTCTTCAATCTGC-TCCACTACT-GCTTAGG-G
* *
38948574 AGATAACATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * ** * * * *
38948618 AGATAAGATCTACAATTTTCAA-CACACTCCGCTGCTGCATAGAG
1 AGATAAGATTTGCCGTCTTCAATC-TGCTCCACTACTGCTTAGGG
* ** ** * * *
38948662 AGACAAGGCTTGGTGCCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* *
38948706 AGATAAGGTTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * ** * * ** * *
38948750 AGAAAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * * *
38948794 AGAAAAGGCTT--CGTGGCTTAAATCTACTTCCCCCTA-T-CTT-GGAA
1 AGATAAGATTTGCCGT--CTTCAATCTGC-T-CCACTACTGCTTAGG-G
* *
38948838 AGATAAGATTTGTCGTCCTCAATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * ** * * *
38948882 AGATAGGATCTACAAGT-TTCAACCCACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGC-CGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * *** * *
38948926 AGACAAGGCTTTG-TAACTTAAATCTGCTTTCCACTA-T-CTT-GGAA
1 AGATAA-GATTTGCCGTCTTCAATCTGC--TCCACTACTGCTTAGG-G
* *
38948970 AGATAAGATTTGCCGCCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
38949014 AGATAAGAT
1 AGATAAGAT
38949023 ATAATATTTT
Statistics
Matches: 866, Mismatches: 379, Indels: 168
0.61 0.27 0.12
Matches are distributed among these distances:
42 44 0.05
43 88 0.10
44 621 0.72
45 72 0.08
46 40 0.05
47 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (44 bp):
AGATAAGATTTGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
Found at i:38950614 original size:44 final size:44
Alignment explanation
Indices: 38950566--38951014 Score: 130
Period size: 44 Copynumber: 10.2 Consensus size: 44
38950556 TTTCTTGGAA
38950566 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
* * ** * * * ** * * *
38950610 AGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
* ** * ** * *
38950654 AGA-CAG-TGCTTGGTGACTTAAATTTGCTTCCCACTA-TGC-T-GGAA
1 AGATAAGAT--TTGCCGTCTTCGATCTGC-T-CCACTACTGCTTAGG-G
38950698 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
* * ** * * * ** * * *
38950742 AGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
* ** ** * * * *
38950786 AGACAAGGCTTGGTGGCTTAGATCTGCTTCC-CT-CTATCTT-GGAA
1 AGATAAGATTTGCCGTCTTCGATCTGC-TCCACTACT-GCTTAGG-G
*
38950830 AGATAACATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
* * ** * * ** * * * *
38950874 AGATAAGATCTACAATTTTC-AACACACTCCGCTGCTGCATAGAG
1 AGATAAGATTTGCCGTCTTCGATC-TGCTCCACTACTGCTTAGGG
* ** ** * ** *
38950918 AGACAAGGCTTGGTGCCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGATTTGCCGTCTTCGATCTGC-T-CCACTACTGCTTAGG-G
*
38950962 AGATAAGGTTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
38951006 AGATAAGAT
1 AGATAAGAT
38951015 CTTCAATTTT
Statistics
Matches: 263, Mismatches: 118, Indels: 48
0.61 0.28 0.11
Matches are distributed among these distances:
42 13 0.05
43 20 0.08
44 200 0.76
45 21 0.08
46 9 0.03
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.29
Consensus pattern (44 bp):
AGATAAGATTTGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
Found at i:38951672 original size:44 final size:44
Alignment explanation
Indices: 38951493--38951673 Score: 111
Period size: 44 Copynumber: 4.1 Consensus size: 44
38951483 TATCTTGGAA
*
38951493 AGATAAGATTTGTCGTCTTCGATCTGCACCACTACTGCTTAGGG
1 AGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
* * ** * * ** * * *
38951537 AGATAAGATCTATAATTTTC-AACCACTCCGCTGCTGCTCAGGG
1 AGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
* * * * ** *
38951580 AGACAAGGCTTAGT-GGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTTGTCGTCTTCGATCTGC-T-CCACTACTGCTTAGG-G
*
38951624 AGATAAGATTTGTCGTATTCGATCTGCTCCACTACTGCTTAGGG
1 AGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
38951668 AGATAA
1 AGATAA
38951674 AATCTACAAT
Statistics
Matches: 92, Mismatches: 36, Indels: 18
0.63 0.25 0.12
Matches are distributed among these distances:
42 6 0.07
43 32 0.35
44 46 0.50
45 4 0.04
46 4 0.04
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (44 bp):
AGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
Found at i:38952204 original size:132 final size:132
Alignment explanation
Indices: 38951967--38953263 Score: 1928
Period size: 132 Copynumber: 9.9 Consensus size: 132
38951957 NNNNNNNNNN
38951967 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
* * * * *
38952032 ACAAGGCTTCGTGGCTTAAATCTACTTCCCCCTATCTTGGAAAGATAAGATTTACCGTCTTCGAT
66 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGAT
38952097 CT
131 CT
38952099 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
* * *
38952164 ACAAGGCTTGGTGGCTTAAATCTGCTTCCCTCTATCTTGGAAAGATAACATTTGCCGTCTTCGAT
66 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGAT
*
38952229 TT
131 CT
* * *
38952231 GCTCCACTACTGCTTAGGAAGATAAGATCTACAATTTTCAAGCCACTCCGCTGCTGCTCAGTGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
*
38952296 ACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGAT
66 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGAT
38952361 CT
131 CT
* ** * * *
38952363 GCTCCACTACTGCTTCGAAAGATAAGATCTTCAATTTTCAACCCACTCCGCAGCTGCTCAGGGTG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
* * * * *
38952428 ACAAGGCTTGGTCACGTAAATCTGCTTCCCACTATCTTGGAAATATAACATTTGTCGTCTTCGAT
66 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGAT
38952493 CT
131 CT
* *
38952495 GCTCCACTACTGCTTAGGGAGATAAGATCTTCAATTTTAAACCCACTCCGCTGCTGCTCAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
* * * * *
38952560 ACAAGGCTTTGTGACTTAAATATGCTTCCCACTATCTTGGAAATATAAGATTTGTCGCCTTCGAT
66 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGAT
38952625 CT
131 CT
* * *
38952627 GCTCCACTACTGCTTAGGGAGATAAAATCTACAATTTTCAGCCCACTCCGCTGCTGCTTAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
* * * *
38952692 ACAAGGCTTGTTGACTTAAAT-TATCTTCCCACTATCTTGGAAAGGTAAGATTTGCCATCTTCGA
66 ACAAGGCTTGGTGACTTAAATCT-GCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGA
*
38952756 TCA
130 TCT
*
38952759 GCTCCACTACTGCTTAGGGAGATAAGATCTACAA-TTTCAACCCACTCCGCTGCTGCTCAAGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
* * * * * * * *
38952823 ATAATGTTTGGTGACTTAAATCTGCTTCCCACTATGTTGGAAAGATAAAATTTGTCATTTTCGAT
66 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGAT
38952888 CT
131 CT
* * * * *
38952890 GCTCCACTACTACTTAGGGAGATAAAATATACAATTTTCAACCTACTCCGCTCCTGCTCAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
* * * *
38952955 ACAAGGGTGGGTGGCTTAAATCTGCTTCCCACTTTCTTGGAAAGATAAGATTTGCCGTCTTCGAT
66 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGAT
38953020 CT
131 CT
38953022 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTTCAACCCACTCCGCTGCTGCTCA-GGA
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAA-TTTTCAACCCACTCCGCTGCTGCTCAGGGA
* *
38953086 GAC-AGAGCTTGGTGACTTTAAATTTGCTTCCCACTATGC-TGGAAAGATAAGATTTACCGTCTT
65 GACAAG-GCTTGGTGAC-TTAAATCTGCTTCCCACTAT-CTTGGAAAGATAAGATTTGCCGTCTT
38953149 CGATCT
127 CGATCT
*
38953155 GCTTCACTACTGCTTA-GGAGATAAGATCTACAATTTTCAACCCACT-CGCTGCTGCTCAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
* *
38953218 ACAAGGCTT-GTGGCTTAAATCTGCTTCCCTCTATCTT-GAAAGATAA
66 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAA
38953264 NNNNNNNNNN
Statistics
Matches: 1057, Mismatches: 98, Indels: 24
0.90 0.08 0.02
Matches are distributed among these distances:
128 10 0.01
129 19 0.02
130 16 0.02
131 138 0.13
132 787 0.74
133 86 0.08
134 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (132 bp):
GCTCCACTACTGCTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAG
ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCGTCTTCGAT
CT
Found at i:38970335 original size:132 final size:132
Alignment explanation
Indices: 38970090--38970655 Score: 841
Period size: 132 Copynumber: 4.3 Consensus size: 132
38970080 NNNNNNNNNN
* *
38970090 CTTAGGGAGATAAGATCTACAA-TTTCAACCCACTCCGCTGCTGCTCAGGGAGATAATGTTTGGT
1 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGTTTGGT
* *
38970154 GACTTAAATCTGCTTCCCACTATGTTGGAAAGATAAAATTTGTCATCTTCGATCTGCTCCACTAC
66 GACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAAATTTGCCATCTTCGATCTGCTCCACTAC
38970219 TA
131 TA
* * * * *
38970221 CTTAGGGAGATAAAATATACAATTTTCAACCTACTCCGCTCCTGCTCAGGGAGACAAGGGTTGGT
1 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGTTTGGT
* * * * *
38970286 GGCTTAAATCTGCTTCCCACTTTCTTGGAAAGATAAGATTTACCGTCTTCGATCTGCTCCACTAC
66 GACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAAATTTGCCATCTTCGATCTGCTCCACTAC
*
38970351 TG
131 TA
* * *
38970353 CTTAGGGAGATAAGATCTACAATTTTCAGCCCACTCCGCTGCTGCTCAGGGAGACAAGGCTTGTT
1 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGTTTGGT
* * *
38970418 GACTTAAAT-TATCTTCCCACTATCTTGGAAAGATAAGATTTGCCATCTTCGATCAGCTCCACTA
66 GACTTAAATCT-GCTTCCCACTATCTTGGAAAGATAAAATTTGCCATCTTCGATCTGCTCCACTA
*
38970482 CTG
130 CTA
* *
38970485 CTTAGGGAGATAAGATCTACAA-TTTCAACCCACTCCGCTGCTGCTCAGGGAGATAATGTTTGGT
1 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGTTTGGT
* *
38970549 GACTTAAATCTGCTTCCCACTATGTTGGAAAGATAAAATTTGTCATCTTCGATCTGCTCCACTAC
66 GACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAAATTTGCCATCTTCGATCTGCTCCACTAC
38970614 TA
131 TA
* * *
38970616 CTTAGGGAGATAAAATATACAATTTTCAACCTACTCCGCT
1 CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCT
38970656 CCTACTNNNN
Statistics
Matches: 389, Mismatches: 42, Indels: 7
0.89 0.10 0.02
Matches are distributed among these distances:
131 137 0.35
132 252 0.65
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
CTTAGGGAGATAAGATCTACAATTTTCAACCCACTCCGCTGCTGCTCAGGGAGACAAGGTTTGGT
GACTTAAATCTGCTTCCCACTATCTTGGAAAGATAAAATTTGCCATCTTCGATCTGCTCCACTAC
TA
Done.