Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62769430
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1067035 characters in sequence are not A, C, G, or T
File 134 of 206
Found at i:40845407 original size:32 final size:32
Alignment explanation
Indices: 40845366--40845612 Score: 171
Period size: 32 Copynumber: 7.7 Consensus size: 32
40845356 GCTACGATAC
*
40845366 TACTGATGGCTTTGTACCGATCACAGTACCGT
1 TACTGATGGCTTTGTGCCGATCACAGTACCGT
**
40845398 TACTGATGGCTTTGTGCCGATCATGGTACCGT
1 TACTGATGGCTTTGTGCCGATCACAGTACCGT
* * **
40845430 TACTGATGGCTTTGTGCCGATCATATTATTGT
1 TACTGATGGCTTTGTGCCGATCACAGTACCGT
* * * ** *
40845462 TACCGATGGCTGTGTGCCAATCA-TTTCACTGT
1 TACTGATGGCTTTGTGCCGATCACAGT-ACCGT
* * * ***
40845494 TACTGATGGCTGTGTGTCGATCATA-TCACTAC
1 TACTGATGGCTTTGTGCCGATCACAGT-ACCGT
* * *
40845526 TACTGATGGTTTTGTGCCGATAAC-GTTATCGT
1 TACTGATGGCTTTGTGCCGATCACAG-TACCGT
* * *
40845558 TACTGATGG-TTGTGTGCCGATCA-TGTCACTGC
1 TACTGATGGCTT-TGTGCCGATCACAGT-ACCGT
* *
40845590 TACTGCTGGCTTTGTGCCAATCA
1 TACTGATGGCTTTGTGCCGATCA
40845613 GATTACTGTA
Statistics
Matches: 174, Mismatches: 33, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
31 5 0.03
32 166 0.95
33 3 0.02
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.36
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCACAGTACCGT
Found at i:40845470 original size:64 final size:64
Alignment explanation
Indices: 40845366--40845612 Score: 246
Period size: 64 Copynumber: 3.9 Consensus size: 64
40845356 GCTACGATAC
* * * * *
40845366 TACTGATGGCTTTGTACCGATCACAGTACCGTTACTGATGGCTTTGTGCCGATCATGGTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACTGTTACTGATGGCTTTGTGCCGATCATGTTACCGT
* * * * *
40845430 TACTGATGGCTTTGTGCCGATCATATTATTGTTACCGATGGCTGTGTGCCAATCAT-TTCACTGT
1 TACTGATGGCTTTGTGCCGATCATATTACTGTTACTGATGGCTTTGTGCCGATCATGTT-ACCGT
* * * ** * * * *
40845494 TACTGATGGCTGTGTGTCGATCATATCACTACTACTGATGGTTTTGTGCCGATAACGTTATCGT
1 TACTGATGGCTTTGTGCCGATCATATTACTGTTACTGATGGCTTTGTGCCGATCATGTTACCGT
* * * * *
40845558 TACTGATGG-TTGTGTGCCGATCATGTCACTGCTACTGCTGGCTTTGTGCCAATCA
1 TACTGATGGCTT-TGTGCCGATCATATTACTGTTACTGATGGCTTTGTGCCGATCA
40845613 GATTACTGTA
Statistics
Matches: 148, Mismatches: 32, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
63 2 0.01
64 144 0.97
65 2 0.01
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.36
Consensus pattern (64 bp):
TACTGATGGCTTTGTGCCGATCATATTACTGTTACTGATGGCTTTGTGCCGATCATGTTACCGT
Found at i:40845540 original size:96 final size:96
Alignment explanation
Indices: 40845430--40845605 Score: 244
Period size: 96 Copynumber: 1.8 Consensus size: 96
40845420 ATGGTACCGT
* * * * *
40845430 TACTGATGGCTTTGTGCCGATCATATTATTGTTACCGATGGCTGTGTGCCAATCATTTCACTGTT
1 TACTGATGGCTTTGTGCCGATAACATTATCGTTACCGATGGCTGTGTGCCAATCATGTCACTGCT
40845495 ACTGATGGCTGTGTGTCGATCATATCACTAC
66 ACTGATGGCTGTGTGTCGATCATATCACTAC
* * * * *
40845526 TACTGATGGTTTTGTGCCGATAACGTTATCGTTACTGATGGTTGTGTGCCGATCATGTCACTGCT
1 TACTGATGGCTTTGTGCCGATAACATTATCGTTACCGATGGCTGTGTGCCAATCATGTCACTGCT
* *
40845591 ACTGCTGGCTTTGTG
66 ACTGATGGCTGTGTG
40845606 CCAATCAGAT
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
96 68 1.00
ACGTcount: A:0.18, C:0.20, G:0.24, T:0.38
Consensus pattern (96 bp):
TACTGATGGCTTTGTGCCGATAACATTATCGTTACCGATGGCTGTGTGCCAATCATGTCACTGCT
ACTGATGGCTGTGTGTCGATCATATCACTAC
Found at i:40849176 original size:24 final size:27
Alignment explanation
Indices: 40849133--40849182 Score: 79
Period size: 24 Copynumber: 2.0 Consensus size: 27
40849123 TACATCGATC
40849133 CATTCACATTATAAATAACA-TAATAT
1 CATTCACATTATAAATAACATTAATAT
40849159 CATTCA-ATT-TAAATAACATTAATA
1 CATTCACATTATAAATAACATTAATA
40849183 AGATAACCGT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 9 0.39
25 8 0.35
26 6 0.26
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (27 bp):
CATTCACATTATAAATAACATTAATAT
Found at i:40860923 original size:74 final size:75
Alignment explanation
Indices: 40860785--40860927 Score: 218
Period size: 74 Copynumber: 1.9 Consensus size: 75
40860775 AAAACAAGGA
40860785 TTATTCCCTTACTAATAGAGAAGGCAAATGAAAAATTAGAAAAAGGAATTATATTCTTTCCAAAA
1 TTATTCCCTTACTAATAGAGAAGGCAAATGAAAAATTAGAAAAAGGAATTATATTCTTTCCAAAA
40860850 GAATCTAGGG
66 GAATCTAGGG
* * * * *
40860860 TTATTCCTTTATTAAT-GAGAAGGCAAATGGAAAGTTAGAAAAA-GAATTATATTTTTTTCCAAA
1 TTATTCCCTTACTAATAGAGAAGGCAAATGAAAAATTAGAAAAAGGAATTATA-TTCTTTCCAAA
40860923 AGAAT
65 AGAAT
40860928 ATTAATTTCC
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
73 8 0.13
74 40 0.65
75 14 0.23
ACGTcount: A:0.43, C:0.10, G:0.15, T:0.31
Consensus pattern (75 bp):
TTATTCCCTTACTAATAGAGAAGGCAAATGAAAAATTAGAAAAAGGAATTATATTCTTTCCAAAA
GAATCTAGGG
Found at i:40861085 original size:138 final size:139
Alignment explanation
Indices: 40860904--40861177 Score: 419
Period size: 138 Copynumber: 2.0 Consensus size: 139
40860894 TTAGAAAAAG
* **
40860904 AATTATATTTTTTTCCAAAAGAATATTAATTTCCATATTTTTTATATTTT-ACCTA-AAGTTAAT
1 AATTATATTTATTTCCAAAAGAATATTAATTTCCATACCTTTTATATTTTAACC-AGAA-TTAAT
* *
40860967 TAATATAACTATTTATATTAATAAATTCGGTAGAATATATACATTTAATATTTTGTATGAATCAA
64 TAATATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAA
40861032 ATTCATATATT
129 ATTCATATATT
* *
40861043 AATTATA-TTATTTCCAAAAGAATATTAATTTTCATGCCTTTTATATTTTAACCAGAATTAATTA
1 AATTATATTTATTTCCAAAAGAATATTAATTTCCATACCTTTTATATTTTAACCAGAATTAATTA
* * *
40861107 ATATAATTTTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
66 ATATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
40861172 TCATAT
131 TCATAT
40861178 TTGCATTGTA
Statistics
Matches: 123, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
138 111 0.90
139 12 0.10
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.47
Consensus pattern (139 bp):
AATTATATTTATTTCCAAAAGAATATTAATTTCCATACCTTTTATATTTTAACCAGAATTAATTA
ATATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
TCATATATT
Found at i:40861269 original size:25 final size:25
Alignment explanation
Indices: 40861240--40861288 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
40861230 GTGTTTAATA
40861240 TTTAACTATCAAATTAAATTAATTG
1 TTTAACTATCAAATTAAATTAATTG
40861265 TTTAACTATCAAATTAAATTAATT
1 TTTAACTATCAAATTAAATTAATT
40861289 AATGTGACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.45, C:0.08, G:0.02, T:0.45
Consensus pattern (25 bp):
TTTAACTATCAAATTAAATTAATTG
Found at i:40867682 original size:136 final size:136
Alignment explanation
Indices: 40867438--40867688 Score: 342
Period size: 136 Copynumber: 1.8 Consensus size: 136
40867428 ATGTCATTAG
40867438 GGTTACCATGTTTCAGGTGTAGTCCTGAACATCCTACCGGTGGTTGAGTTCCAACATTTGTTGCA
1 GGTTACCATGTTTCAGGTGTAGTCCTGAACATCCTACCGGTGGTTGAGTTCCAACATTTGTTGCA
* *
40867503 GATACTCGACAGCTTATGTTAGCAGCATTGTATAACTATGTTCCAACCGACGGCTTGTGTGAGCA
66 GATACTCGACAGCTTATGTGAGCAGCAGTGTATAACTATGTTCCAACCGACGGCTTGTGTGAGCA
40867568 GACCCA
131 GACCCA
* * *** *
40867574 GGTTACCATGTTTTAGGTGCTGGTCCTGAACAT-CTACCGGTGGTTGAGTTTTGACATTTGTTGT
1 GGTTACCATGTTTCAGGTG-TAGTCCTGAACATCCTACCGGTGGTTGAGTTCCAACATTTGTTGC
* * * * * ** *
40867638 GGATACTTGACATCTTGTGTGAGCAGCAGTGTTTATTTATGTTCCGACCGA
65 AGATACTCGACAGCTTATGTGAGCAGCAGTGTATAACTATGTTCCAACCGA
40867689 TAGCTTGTAT
Statistics
Matches: 98, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
136 86 0.88
137 12 0.12
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.34
Consensus pattern (136 bp):
GGTTACCATGTTTCAGGTGTAGTCCTGAACATCCTACCGGTGGTTGAGTTCCAACATTTGTTGCA
GATACTCGACAGCTTATGTGAGCAGCAGTGTATAACTATGTTCCAACCGACGGCTTGTGTGAGCA
GACCCA
Found at i:40871189 original size:20 final size:21
Alignment explanation
Indices: 40871158--40871208 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
40871148 AAAAAGTTAA
40871158 AAAAAGGAATTACATACTTT-T
1 AAAAA-GAATTACATACTTTCT
* * *
40871179 TAAAAGAATTATATTCTTTCT
1 AAAAAGAATTACATACTTTCT
40871200 AAAAAGAAT
1 AAAAAGAAT
40871209 ATAGGATTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 12 0.48
21 13 0.52
ACGTcount: A:0.49, C:0.08, G:0.08, T:0.35
Consensus pattern (21 bp):
AAAAAGAATTACATACTTTCT
Found at i:40871408 original size:138 final size:138
Alignment explanation
Indices: 40871246--40871529 Score: 471
Period size: 138 Copynumber: 2.1 Consensus size: 138
40871236 ATAGGAAAAG
* * *
40871246 AATTATATTCTTTTCAAAAGAATATTAATTTTTATGTCTTTTATATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATATTGACCGAAATTAATTAA
*
40871311 TATAATTGTTTATATTAATAAATTTGG-AAAACTATATACAATTAATATTTTCTATGAATAAAAT
66 TATAACTGTTTATATTAATAAATTTGGTAAAA-TATATACAATTAATATTTTCTATGAATAAAAT
40871375 TCATATATT
130 TCATATATT
* * *
40871384 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTCTATATTGGCCTAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATATTGACCGAAATTAATTAA
* *
40871449 TATAACTGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAACTGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTCTATGAATAAAATT
40871514 CATATATT
131 CATATATT
40871522 AATTATAT
1 AATTATAT
40871530 CTATTTTATA
Statistics
Matches: 136, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
138 132 0.97
139 4 0.03
ACGTcount: A:0.40, C:0.07, G:0.06, T:0.46
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATATTGACCGAAATTAATTAA
TATAACTGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTCTATGAATAAAATT
CATATATT
Found at i:40886125 original size:43 final size:42
Alignment explanation
Indices: 40886025--40886170 Score: 161
Period size: 42 Copynumber: 3.5 Consensus size: 42
40886015 GTTACTCGGT
* * *
40886025 GGAATCAGCACTTAGCAACCACC-TTATATTCAATGATACGG
1 GGAATCAGCACTTAGCAACCACCTTTAAAATCAATGATATGG
* *
40886066 GGAATCAGCACATAGCAACC-CCTTTCAAAATCAAGGATATGG
1 GGAATCAGCACTTAGCAACCACCTTT-AAAATCAATGATATGG
* * * * * *
40886108 TGGAATCAGTACTTAGCAACCACATTTAGAATCAATAATTTAG
1 -GGAATCAGCACTTAGCAACCACCTTTAAAATCAATGATATGG
40886151 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
40886171 CCTCGAGAAA
Statistics
Matches: 87, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
40 2 0.02
41 21 0.24
42 31 0.36
43 29 0.33
44 4 0.05
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (42 bp):
GGAATCAGCACTTAGCAACCACCTTTAAAATCAATGATATGG
Found at i:40886264 original size:41 final size:41
Alignment explanation
Indices: 40886173--40886282 Score: 148
Period size: 41 Copynumber: 2.7 Consensus size: 41
40886163 TAGCAACCCC
* * * *
40886173 TCGAGAAATCTTCACTTAGCAACCTCTTTTTTTATCAGAGTT
1 TCGAGGAATCTACACTTAGCAACC-CCTTTTTGATCAGAGTT
40886215 TCGAGGAATCTACACTTAGCAACCCCTTTTTGATCAGAGTT
1 TCGAGGAATCTACACTTAGCAACCCCTTTTTGATCAGAGTT
* * *
40886256 TTGGGGAATCTGCACTTAGCAACCCCT
1 TCGAGGAATCTACACTTAGCAACCCCT
40886283 CAGGGAATCT
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
41 39 0.64
42 22 0.36
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (41 bp):
TCGAGGAATCTACACTTAGCAACCCCTTTTTGATCAGAGTT
Found at i:40886295 original size:26 final size:26
Alignment explanation
Indices: 40886259--40886308 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
40886249 CAGAGTTTTG
40886259 GGGAATCTGCACTTAGCAACCCCTCA
1 GGGAATCTGCACTTAGCAACCCCTCA
*
40886285 GGGAATCTGCACTTAGCATCCCCT
1 GGGAATCTGCACTTAGCAACCCCT
40886309 TTTCTATCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.34, G:0.20, T:0.22
Consensus pattern (26 bp):
GGGAATCTGCACTTAGCAACCCCTCA
Found at i:40886301 original size:67 final size:67
Alignment explanation
Indices: 40886219--40886349 Score: 201
Period size: 67 Copynumber: 2.0 Consensus size: 67
40886209 AGAGTTTCGA
* *
40886219 GGAATCTACACTTAGCAACCCCTTTT-TGATCAGAGTTTTGGGGAATCTGCACTTAGCAACCCCT
1 GGAATCTACACTTAGCAACCCCTTTTCT-ATCAGAGATTCGGGGAATCTGCACTTAGCAACCCCT
40886283 CAG
65 CAG
* * *
40886286 GGAATCTGCACTTAGCATCCCCTTTTCTATCAGTGATTCGGGGAATCTGCACTTAGCAACCCCT
1 GGAATCTACACTTAGCAACCCCTTTTCTATCAGAGATTCGGGGAATCTGCACTTAGCAACCCCT
40886350 TACATTCAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
67 57 0.98
68 1 0.02
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (67 bp):
GGAATCTACACTTAGCAACCCCTTTTCTATCAGAGATTCGGGGAATCTGCACTTAGCAACCCCTC
AG
Found at i:40891903 original size:19 final size:19
Alignment explanation
Indices: 40891879--40891916 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
40891869 ACTAAAAAAT
40891879 TATCAAACAAAACCATAAA
1 TATCAAACAAAACCATAAA
40891898 TATCAAACAAAACCATAAA
1 TATCAAACAAAACCATAAA
40891917 ATGCTTGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.63, C:0.21, G:0.00, T:0.16
Consensus pattern (19 bp):
TATCAAACAAAACCATAAA
Found at i:40892731 original size:4 final size:4
Alignment explanation
Indices: 40892724--40892770 Score: 94
Period size: 4 Copynumber: 11.8 Consensus size: 4
40892714 AAAATATATA
40892724 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
40892771 ACATTTTAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 43 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:40913420 original size:44 final size:43
Alignment explanation
Indices: 40913370--40914039 Score: 239
Period size: 44 Copynumber: 15.6 Consensus size: 43
40913360 ACAGATCGAG
*
40913370 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAGGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAATAGCCAAA
* * *
40913414 TCTTATCTCCCTGAAGTTGTAGTGGGGCAGATTAAA-A-CCGGTAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAATAGCC--AAA
* ** * * *
40913458 TCCTATCTTGCTGAAGTTGCAGT-AAGCGGATTAAA-A-CCTTAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAATAGCC--AAA
* * ** * *
40913501 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGATCGCAT---CTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-AAATAGCCAAA
* *
40913541 TCTTATC-CTCCTGAAGTTGCAGT--A--AG---GAT-GGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGAGCAGATAAATAGCCAAA
* *
40913576 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAA-AGCCGACAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAATAGCC-A-AA
* * * *
40913620 TCCTATCTCCCTGAAGTTGCAGTGGAGCGGGTTAAA-A-CCTTAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGC-AGATAAATAGCC--AAA
* * * *
40913664 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGAT---T-GCATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAATAGC--CAAA
* * * *
40913704 TCTTATCTTCCTGAAGTTGCAGTGAAGCAGACTAATTGAG-CAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAAT-AGCCAAA
* *
40913748 TCTTATC-CTCCTGAAGTTGCAG-CGAGGCAGACTGAAGAT-GGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-T-AA-ATAGCCAAA
*
40913793 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA-AGCCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAATAGCC-A-AA
** * * * *
40913837 TCCCATCTCCCTAAAGTTGCAGTGGAACGGATCAAA-A-CCTTAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-AAATAGCC--AAA
* * ** * *
40913881 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGATCGCAT---CTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-AAATAGCCAAA
* * * *
40913921 TCTTATCTCCCTGAAGTTGCAGT-GAGGCAAACTGAAGATCGCATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGA-GCAGA-T-AA-ATAGC--CAAA
* *
40913969 TCTTATCTCCCTGAAGTTCCAGTGGAGCAGATTAA-AGCCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAATAGCC-A-AA
* *
40914013 TCCTATCTCCCTGAAATTGCAGTGGAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAG
40914040 TGGATTAAAG
Statistics
Matches: 473, Mismatches: 95, Indels: 116
0.69 0.14 0.17
Matches are distributed among these distances:
33 2 0.00
35 22 0.05
36 1 0.00
37 3 0.01
39 4 0.01
40 63 0.13
41 10 0.02
42 16 0.03
43 57 0.12
44 214 0.45
45 42 0.09
46 5 0.01
47 2 0.00
48 30 0.06
49 2 0.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.28
Consensus pattern (43 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAATAGCCAAA
Found at i:40913702 original size:163 final size:162
Alignment explanation
Indices: 40913408--40913726 Score: 521
Period size: 163 Copynumber: 2.0 Consensus size: 162
40913398 AGACTAAATA
* * * ** **
40913408 GGCAAATCTTATCTCCCTGAAGTTGTAGTGGGGCAGATTAAAACCGGTAATCCTATCTTGCTGAA
1 GGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACCGACAATCCTATCTCCCTGAA
40913473 GTTGCAGTAAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATC
66 GTTGCAGTAAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATC
40913538 TAGTCTTATCCTCCTGAAGTTGCAGTAAGGAT
131 TAGTCTTATCCTCCTGAAGTTGCAGTAAGGAT
*
40913570 GGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCGACAATCCTATCTCCCTGAA
1 GGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACCGACAATCCTATCTCCCTGAA
* * *
40913635 GTTGCAGTGGAGCGGGTTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATTGCAT
66 GTTGCAGT-AAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCAT
*
40913700 CTAGTCTTATCTTCCTGAAGTTGCAGT
130 CTAGTCTTATCCTCCTGAAGTTGCAGT
40913727 GAAGCAGACT
Statistics
Matches: 144, Mismatches: 12, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
162 65 0.45
163 79 0.55
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (162 bp):
GGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACCGACAATCCTATCTCCCTGAA
GTTGCAGTAAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATC
TAGTCTTATCCTCCTGAAGTTGCAGTAAGGAT
Found at i:40913812 original size:45 final size:44
Alignment explanation
Indices: 40913704--40913828 Score: 137
Period size: 45 Copynumber: 2.8 Consensus size: 44
40913694 TTGCATCTAG
* * * *
40913704 TCTTATCTTCCTGAAGTTGCAGTGAAGCAGACTAATTGAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGCGAAGCAGACTAAATGAGCAAA
*
40913748 TCTTATC-CTCCTGAAGTTGCAGCGAGGCAGACTGAAGATG-GCAAA
1 TCTTATCTC-CCTGAAGTTGCAGCGAAGCAGACT-AA-ATGAGCAAA
* * *
40913793 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
1 TCTTATCTCCCTGAAGTTGCAGCGAAGCAGACTAAA
40913829 GCCGATAATC
Statistics
Matches: 68, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 31 0.46
45 33 0.49
46 3 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGCGAAGCAGACTAAATGAGCAAA
Found at i:40921343 original size:50 final size:51
Alignment explanation
Indices: 40921273--40921408 Score: 195
Period size: 50 Copynumber: 2.7 Consensus size: 51
40921263 AGTGAAAATG
* *
40921273 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT-
1 ATGGTCACATATGTAGTACTATGTGCAGGCTACTACGTGTACCGG-ATGATA
* *
40921324 A-GGTCGCATATGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGGTA
1 ATGGTCACATATGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGATA
* *
40921374 ATGGTCACATGTGTAGTACTATGTGCAGGGTACTA
1 ATGGTCACATATGTAGTACTATGTGCAGGCTACTA
40921409 TGTGAAACGA
Statistics
Matches: 76, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
49 4 0.05
50 41 0.54
51 31 0.41
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (51 bp):
ATGGTCACATATGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGATA
Found at i:40929691 original size:12 final size:12
Alignment explanation
Indices: 40929674--40929703 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
40929664 CCTCACACGC
40929674 CCGTGTGCTAGG
1 CCGTGTGCTAGG
40929686 CCGTGTGCTAGG
1 CCGTGTGCTAGG
*
40929698 TCGTGT
1 CCGTGT
40929704 AACAGCCTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.23, G:0.40, T:0.30
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:40930909 original size:29 final size:30
Alignment explanation
Indices: 40930876--40931022 Score: 165
Period size: 29 Copynumber: 4.9 Consensus size: 30
40930866 TTCCATAATT
40930876 TTGATGGTCGTCACCATCCCTTTTCAT-TG
1 TTGATGGTCGTCACCATCCCTTTTCATATG
40930905 TTGATGGTCGTCACCATCCCTTTTCATAAT-
1 TTGATGGTCGTCACCATCCCTTTTCAT-ATG
* * *** * *
40930935 TTGATAGCCGAGGCTATCCCTTTTCATAATT
1 TTGATGGTCGTCACCATCCCTTTTCAT-ATG
* *
40930966 TTGATGCTCATCACCATCCCTTTTCAT-TG
1 TTGATGGTCGTCACCATCCCTTTTCATATG
*
40930995 TTGATGGTCGTAACCATCCCTTTTCATA
1 TTGATGGTCGTCACCATCCCTTTTCATA
40931023 GCTCGATAGT
Statistics
Matches: 96, Mismatches: 18, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
29 52 0.54
30 24 0.25
31 20 0.21
ACGTcount: A:0.19, C:0.27, G:0.14, T:0.40
Consensus pattern (30 bp):
TTGATGGTCGTCACCATCCCTTTTCATATG
Found at i:40930924 original size:60 final size:61
Alignment explanation
Indices: 40930860--40931022 Score: 174
Period size: 60 Copynumber: 2.7 Consensus size: 61
40930850 AGCCGAAACT
* * * * *
40930860 ATCCCATTCCATAATTTTGATGGTCGTCACCATCCCTTTTCAT-TGTTGATGGTCGTCACC
1 ATCCCTTTTCATAATTTTGATGGTCGTAACCATCCCTTTTCATATGTTGATGCTCATCACC
* * * * *
40930920 ATCCCTTTTCATAA-TTTGATAGCCG-AGGCTATCCCTTTTCATAATTTTGATGCTCATCACC
1 ATCCCTTTTCATAATTTTGATGGTCGTA-ACCATCCCTTTTCAT-ATGTTGATGCTCATCACC
*
40930981 ATCCCTTTTCAT--TGTTGATGGTCGTAACCATCCCTTTTCATA
1 ATCCCTTTTCATAATTTTGATGGTCGTAACCATCCCTTTTCATA
40931023 GCTCGATAGT
Statistics
Matches: 83, Mismatches: 15, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
59 23 0.28
60 33 0.40
61 27 0.33
ACGTcount: A:0.20, C:0.27, G:0.13, T:0.40
Consensus pattern (61 bp):
ATCCCTTTTCATAATTTTGATGGTCGTAACCATCCCTTTTCATATGTTGATGCTCATCACC
Found at i:40930954 original size:30 final size:30
Alignment explanation
Indices: 40930800--40930966 Score: 115
Period size: 30 Copynumber: 5.6 Consensus size: 30
40930790 TGATTGGCAC
* *
40930800 ATCCCTTTCCATAATTCGATAGCC-AAAGCT
1 ATCCCTTTTCATAATTTGATAGCCGAAA-CT
* * *
40930830 ATCCCTTTTCATGATTCGGTAGCCGAAACT
1 ATCCCTTTTCATAATTTGATAGCCGAAACT
* * * * ** *
40930860 ATCCCATTCCATAATTTTGATGGTCGTCACC
1 ATCCCTTTTCATAA-TTTGATAGCCGAAACT
* * ** *
40930891 ATCCCTTTTCAT--TGTTGATGGTCGTCACC
1 ATCCCTTTTCATAAT-TTGATAGCCGAAACT
**
40930920 ATCCCTTTTCATAATTTGATAGCCGAGGCT
1 ATCCCTTTTCATAATTTGATAGCCGAAACT
40930950 ATCCCTTTTCATAATTT
1 ATCCCTTTTCATAATTT
40930967 TGATGCTCAT
Statistics
Matches: 111, Mismatches: 21, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
28 1 0.01
29 27 0.24
30 60 0.54
31 23 0.21
ACGTcount: A:0.23, C:0.27, G:0.13, T:0.37
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATAGCCGAAACT
Found at i:40931041 original size:90 final size:90
Alignment explanation
Indices: 40930830--40931051 Score: 302
Period size: 90 Copynumber: 2.5 Consensus size: 90
40930820 AGCCAAAGCT
* * * ** * * * *
40930830 ATCCCTTTTCATGATTCGGTAGCCGAAACTATCCCATTCCATAATTTTGATGGTCGTCACCATCC
1 ATCCCTTTTCATAACTCGATAGCCGAGGCTATCCCTTTTCATAATTTTGATGCTCATCACCATCC
*
40930895 CTTTTCATTGTTGATGGTCGTCACC
66 CTTTTCATTGTTGATGGTCGTAACC
* *
40930920 ATCCCTTTTCATAATTTGATAGCCGAGGCTATCCCTTTTCATAATTTTGATGCTCATCACCATCC
1 ATCCCTTTTCATAACTCGATAGCCGAGGCTATCCCTTTTCATAATTTTGATGCTCATCACCATCC
40930985 CTTTTCATTGTTGATGGTCGTAACC
66 CTTTTCATTGTTGATGGTCGTAACC
* *
40931010 ATCCCTTTTCATAGCTCGATAGTCG-GAGCTATCCCTTTTCAT
1 ATCCCTTTTCATAACTCGATAGCCGAG-GCTATCCCTTTTCAT
40931052 TAGTCGATAA
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
89 1 0.01
90 116 0.99
ACGTcount: A:0.20, C:0.27, G:0.14, T:0.38
Consensus pattern (90 bp):
ATCCCTTTTCATAACTCGATAGCCGAGGCTATCCCTTTTCATAATTTTGATGCTCATCACCATCC
CTTTTCATTGTTGATGGTCGTAACC
Found at i:40934719 original size:37 final size:35
Alignment explanation
Indices: 40934666--40934758 Score: 98
Period size: 37 Copynumber: 2.5 Consensus size: 35
40934656 TATTCTAAAC
*
40934666 ATAATATTATTTTAATAGT-TTTATATAAAATTTAAT
1 ATAATATTATCTTAATAGTATTT-TAT-AAATTTAAT
*
40934702 ATAATACTTATCTTAATAGTATTTTATTAATTTAAT
1 ATAATA-TTATCTTAATAGTATTTTATAAATTTAAT
40934738 ATTAAAGTGATTATCTTAATA
1 A-T-AA-T-ATTATCTTAATA
40934759 TTAAATTTAA
Statistics
Matches: 49, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
36 15 0.31
37 16 0.33
38 5 0.10
39 12 0.24
40 1 0.02
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (35 bp):
ATAATATTATCTTAATAGTATTTTATAAATTTAAT
Found at i:40937080 original size:21 final size:19
Alignment explanation
Indices: 40937043--40937117 Score: 132
Period size: 19 Copynumber: 3.8 Consensus size: 19
40937033 CACCATATCT
40937043 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
40937062 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
40937083 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
40937102 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
40937118 CTTGAAGATT
Statistics
Matches: 54, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
19 35 0.65
21 19 0.35
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:40939252 original size:40 final size:39
Alignment explanation
Indices: 40939194--40939299 Score: 149
Period size: 40 Copynumber: 2.6 Consensus size: 39
40939184 GTACAGAAAA
* * *
40939194 ACAAACAGGAGCATGTATGTGCAATCAGGGATATCGAAGT
1 ACAAACAGG-GCACGTATGTGCAATCAGGGATACCAAAGT
*
40939234 ACAAACAGGTGCACGTATGTGCAATCAGGGGTACCAAAGT
1 ACAAACAGG-GCACGTATGTGCAATCAGGGATACCAAAGT
40939274 ACAAACAGGGACACGTATGTGCAATC
1 ACAAACAGGG-CACGTATGTGCAATC
40939300 GTTCAATTAT
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
39 1 0.02
40 59 0.98
ACGTcount: A:0.37, C:0.19, G:0.26, T:0.18
Consensus pattern (39 bp):
ACAAACAGGGCACGTATGTGCAATCAGGGATACCAAAGT
Found at i:40941025 original size:16 final size:16
Alignment explanation
Indices: 40941004--40941036 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
40940994 TCTTATTGCC
*
40941004 TTGCTACTATAGAATA
1 TTGCTACTATAAAATA
40941020 TTGCTACTATAAAATA
1 TTGCTACTATAAAATA
40941036 T
1 T
40941037 AGAATACCGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.39
Consensus pattern (16 bp):
TTGCTACTATAAAATA
Found at i:40941185 original size:12 final size:12
Alignment explanation
Indices: 40941168--40941197 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
40941158 ACATAAGATA
40941168 AGATAAAATAAC
1 AGATAAAATAAC
40941180 AGATAAAATAAC
1 AGATAAAATAAC
*
40941192 ATATAA
1 AGATAA
40941198 CATATAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.67, C:0.07, G:0.07, T:0.20
Consensus pattern (12 bp):
AGATAAAATAAC
Found at i:40941185 original size:17 final size:19
Alignment explanation
Indices: 40941163--40941206 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
40941153 AAACAACATA
*
40941163 AGATAAGATAA-A-ATAAC
1 AGATAAAATAACATATAAC
40941180 AGATAAAATAACATATAAC
1 AGATAAAATAACATATAAC
*
40941199 ATATAAAA
1 AGATAAAA
40941207 AGAGAAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 10 0.43
18 1 0.04
19 12 0.52
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.20
Consensus pattern (19 bp):
AGATAAAATAACATATAAC
Found at i:40946103 original size:14 final size:14
Alignment explanation
Indices: 40946084--40946117 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
40946074 ACAGATGGAT
*
40946084 TCATATCATTCTTA
1 TCATATAATTCTTA
40946098 TCATATAATTCTTA
1 TCATATAATTCTTA
40946112 T-ATATA
1 TCATATA
40946118 TTGTACAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50
Consensus pattern (14 bp):
TCATATAATTCTTA
Found at i:40953910 original size:14 final size:14
Alignment explanation
Indices: 40953891--40953917 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
40953881 TACATTGGGC
40953891 AGATTCATGCATGT
1 AGATTCATGCATGT
40953905 AGATTCATGCATG
1 AGATTCATGCATG
40953918 GGAGGATTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:40955354 original size:76 final size:76
Alignment explanation
Indices: 40955228--40955380 Score: 306
Period size: 76 Copynumber: 2.0 Consensus size: 76
40955218 GATTCCATCC
40955228 ATAAAGCTATTTTCTTCCCTATGAGTTCGAGTCTATATAAGAATGCTAGTTTCTACTGTTCATAT
1 ATAAAGCTATTTTCTTCCCTATGAGTTCGAGTCTATATAAGAATGCTAGTTTCTACTGTTCATAT
40955293 GTTATGATATG
66 GTTATGATATG
40955304 ATAAAGCTATTTTCTTCCCTATGAGTTCGAGTCTATATAAGAATGCTAGTTTCTACTGTTCATAT
1 ATAAAGCTATTTTCTTCCCTATGAGTTCGAGTCTATATAAGAATGCTAGTTTCTACTGTTCATAT
40955369 GTTATGATATG
66 GTTATGATATG
40955380 A
1 A
40955381 ATATACCACA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 77 1.00
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (76 bp):
ATAAAGCTATTTTCTTCCCTATGAGTTCGAGTCTATATAAGAATGCTAGTTTCTACTGTTCATAT
GTTATGATATG
Found at i:40958231 original size:24 final size:21
Alignment explanation
Indices: 40958203--40958274 Score: 81
Period size: 21 Copynumber: 3.3 Consensus size: 21
40958193 ACAAAAAAGA
*
40958203 TTTGTCTAAGTCACTTCATTTCTT
1 TTTGTCCAAGTCACTTC---TCTT
*
40958227 TTTGTCCAAGTTACTTCTCTT
1 TTTGTCCAAGTCACTTCTCTT
**
40958248 TTTGTCCAAGTTGCTTCTCTT
1 TTTGTCCAAGTCACTTCTCTT
40958269 TTTGTC
1 TTTGTC
40958275 TAACTCCATT
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
21 30 0.67
24 15 0.33
ACGTcount: A:0.12, C:0.22, G:0.11, T:0.54
Consensus pattern (21 bp):
TTTGTCCAAGTCACTTCTCTT
Found at i:40958249 original size:21 final size:21
Alignment explanation
Indices: 40958223--40958274 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
40958213 TCACTTCATT
40958223 TCTTTTTGTCCAAGTTACTTC
1 TCTTTTTGTCCAAGTTACTTC
*
40958244 TCTTTTTGTCCAAGTTGCTTC
1 TCTTTTTGTCCAAGTTACTTC
40958265 TCTTTTTGTC
1 TCTTTTTGTC
40958275 TAACTCCATT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.10, C:0.23, G:0.12, T:0.56
Consensus pattern (21 bp):
TCTTTTTGTCCAAGTTACTTC
Found at i:40960689 original size:18 final size:18
Alignment explanation
Indices: 40960636--40960729 Score: 77
Period size: 18 Copynumber: 5.4 Consensus size: 18
40960626 AAGGTTTTCT
40960636 TATTGATGATA-T--CGA
1 TATTGATGATAGTGACGA
**
40960651 TATTGATGATAGTGATTA
1 TATTGATGATAGTGACGA
*
40960669 TATTGATGCTAGTGACGA
1 TATTGATGATAGTGACGA
** * * *
40960687 TATCAATGCTAGTGATGC
1 TATTGATGATAGTGACGA
* *
40960705 TATTAATGATAGTGACGC
1 TATTGATGATAGTGACGA
40960723 TATTGAT
1 TATTGAT
40960730 CATGACCTTG
Statistics
Matches: 63, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
15 11 0.17
16 1 0.02
18 51 0.81
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (18 bp):
TATTGATGATAGTGACGA
Found at i:40970290 original size:17 final size:17
Alignment explanation
Indices: 40970265--40970300 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
40970255 TTTGAGTACC
*
40970265 AGGCACTACGGCGTTGA
1 AGGCACTACAGCGTTGA
*
40970282 AGGCGCTACAGCGTTGA
1 AGGCACTACAGCGTTGA
40970299 AG
1 AG
40970301 TAACCCATGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.25, C:0.22, G:0.36, T:0.17
Consensus pattern (17 bp):
AGGCACTACAGCGTTGA
Found at i:40976133 original size:616 final size:618
Alignment explanation
Indices: 40974385--40976816 Score: 3973
Period size: 617 Copynumber: 3.9 Consensus size: 618
40974375 ATGTAACGGG
* * * *
40974385 CCAAAATTTAAGCCTTTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTCCTTTAATGGCTAA
1 CCAAAATTTAAGTCTCTAATTTTTGCATGTTTAGACACAAATTGCTTGTTTTCTTTAATGGCTAA
* * * *
40974450 GTGATTTGGATGCATATGGCAGTGTTTGAGAAGTCTGGGTTCAAGTCTTGGCCTTGGCACAA-TT
66 GTGATTTGGATGTATATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTGGGCACAAGTT
* *
40974514 TTAAGCTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTGTTATATATTAATACTTGTT
131 TT-AGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTT
* * *
40974579 TTATGACACAAAGAGCCTATTGGTCCAATGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGT
195 TTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTGATTGGGCCTTACCGTGCACTGCAACGT
*
40974644 GTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCA
260 GTGGGACCGATCGCTTATAAACTAGGGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCA
* ** *
40974709 CGCCTCCATGCTAAGGAATTATCGCTCTGACCCCACTCACATAGTACCAGTTGAGGAGATTGAGG
325 CGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGG
* * * *
40974774 TTAGGC-ATGATCTGACCTTCAAGGAGAAGCTAGTGCGGGTCTTGGACCGTGAGGTGAAGTTACT
390 TTAGGCTA-GATCTGACCTTCGAGGAGAAGCCAGTGCGGATGTTGGACCGTGAGGTGAAGTTACT
* * *
40974838 GAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTTATCACAGTTTAGAAGAAGCCACGT
454 GAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAACAAGCCACGT
* * * * * *
40974903 GGGGACACGAAAAGGCGATGCAATAGCAATACCCTCATCTTTTCTGACCAAGTAAATTTTGAGGT
519 GGGAACACGAAGAGGCAATGCGACAGCAATACCCTCATCTTTTCTTACCAAGTAAATTTTGAGGT
40974968 CGAAAGTTTGTTAAAGGGGGTAGAGTTGTAATGCC
584 CGAAAGTTTGTTAAAGGGGGTAGAGTTGTAATGCC
*
40975003 CCAAAATTTAAGTCTCTAATTTTTGCATGTTTAGACATAAATTGCTTGTTTTCTTTAATGGCTAA
1 CCAAAATTTAAGTCTCTAATTTTTGCATGTTTAGACACAAATTGCTTGTTTTCTTTAATGGCTAA
* *
40975068 GTGATTTGGATGTATATGGGAGTGTTTAAGAAGCTTGGGTTCAAGTCTTGGCCTGGGCACAAGTT
66 GTGATTTGGATGTATATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTGGGCACAAGTT
* *
40975133 TTAGTTTTTCTCTTGAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTTTTT
131 TTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTT
*
40975198 TATGACACAAAGAGCCTATTGGTCCAGTGGTACGTTGATTGGGCCTTACCGTGCACTGCAACGTG
196 TATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTGATTGGGCCTTACCGTGCACTGCAACGTG
* * * *
40975263 TGGGATCGATCACTTATAAGCTAGGGTTTCCTCTGAAATTAGACCAGTTTCATGATGTGTTTCAC
261 TGGGACCGATCGCTTATAAACTAGGGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCAC
40975328 GTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGT
326 GTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGT
* *
40975393 TAGGCTAGATCTGACCTTCGAGGAGAAGCCGGTACGGATGTTGGACCGTGAGGTGAAGTTACTGA
391 TAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCGGATGTTGGACCGTGAGGTGAAGTTACTGA
*
40975458 GGAAGAAATCTATTCCATTAGTCAAAGTGCTTT-GCATAATCACAGTTCAGAACAAGCCACGTGG
456 GGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAACAAGCCACGTGG
* * * *
40975522 GAACCCGAAGAGGCAATGCGACAGCAATACCCTTAT-TTTTTTTACCAGGTAAATTTTGAGGTTC
521 GAACACGAAGAGGCAATGCGACAGCAATACCCTCATCTTTTCTTACCAAGTAAATTTTGAGG-TC
* * *
40975586 -AAATTTTGTTAAATGTGGTAGAGTTGTAATGCC
585 GAAAGTTTGTTAAAGGGGGTAGAGTTGTAATGCC
* *
40975619 CAAAAATTTAAGTCTCTAATTTTTGCATGTTTAGACACAAATTGCTTGTTTTCTTTAATGACTAA
1 CCAAAATTTAAGTCTCTAATTTTTGCATGTTTAGACACAAATTGCTTGTTTTCTTTAATGGCTAA
* * * * * *
40975684 GTGATTTGGGTGTGTATGAGAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTT
66 GTGATTTGGATGTATATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTGGGCACAAGTT
* *
40975749 TTAGTTTTTCTCTTAAATGAATCTGGACACTGGCTCTTAGGCCTTTTATATATTTATACTTGTTT
131 TTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTT
* * *
40975814 TATG-CACAAAGAGGCTATTGGTCCAGTGGTAGGTTGATTGGGCCTTACTGTGCACTGCAACGTA
196 TATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTGATTGGGCCTTACCGTGCACTGCAACGTG
* *
40975878 TGGGACCGATCGCTTATAAACTAGGGTTTCCTCTAAAATTAGACCAGATTCATGATGTGTTTCAT
261 TGGGACCGATCGCTTATAAACTAGGGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCAC
40975943 GTCTCCATGCTAAGGCGTTA-CTGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGG
326 GTCTCCATGCTAAGGCGTTATC-GCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGG
*
40976007 TTAGGCTAGATCTGACCTTCGAGGAGAAGCTAGTGCGGATGTTGGACCGTGAGGTGAAGTTACTG
390 TTAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCGGATGTTGGACCGTGAGGTGAAGTTACTG
* *
40976072 AGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTA
455 AGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAACAAGCCACGTG
* *
40976137 GGAACACGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTAACCAAGTAAATTTTGAGGTC
520 GGAACACGAAGAGGCAATGCGACAGCAATACCCTCATCTTTTCTTACCAAGTAAATTTTGAGGTC
40976202 GAAAGTTTGTTAAAGGGGGTAGAGTTGTAATGCC
585 GAAAGTTTGTTAAAGGGGGTAGAGTTGTAATGCC
* * **
40976236 CCAAAATTTAAATCTCTAATTTTTGCATGTTTAGACACAAATTGATTGTTTGGTTTAATGGCTAA
1 CCAAAATTTAAGTCTCTAATTTTTGCATGTTTAGACACAAATTGCTTGTTTTCTTTAATGGCTAA
*
40976301 GTGATTTGGATGTATGTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTGGGCACAAGTT
66 GTGATTTGGATGTATATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTGGGCACAAGTT
* *
40976366 TTAGTTTTTCTCTTAGATGAATCTGGACACTAGCACTTAGGCCTTTTATATATTAATACTT-TTT
131 TTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTT
*
40976430 TATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTGATTGAGCCTTACCGTGCACTGCAACGTG
196 TATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTGATTGGGCCTTACCGTGCACTGCAACGTG
* *
40976495 TGGGACCGATCGCTTATAAACTAGGGTTTCCTCTGAGATTAGACCAGTTTCATGATGTGTTTCAC
261 TGGGACCGATCGCTTATAAACTAGGGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCAC
* *
40976560 GTCTCCATGCTAAGGCGTTATCTCTCTGATCCCACTCACATAGTATCAGTTGAGGAGATTGAGGT
326 GTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGT
*
40976625 TAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCGGATGTTGGACCATGAGGTGAAGTTACTGA
391 TAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCGGATGTTGGACCGTGAGGTGAAGTTACTGA
40976690 GGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAACAAGCCACGTGG
456 GGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAACAAGCCACGTGG
* * * *
40976755 GAACCCGAAGAGGCAATGCGACAGCAATACCCTTAT-TTTTTTTACCAGGTAAATTTTGAGGT
521 GAACACGAAGAGGCAATGCGACAGCAATACCCTCATCTTTTCTTACCAAGTAAATTTTGAGGT
40976817 TCAAATTTTT
Statistics
Matches: 1678, Mismatches: 127, Indels: 20
0.92 0.07 0.01
Matches are distributed among these distances:
614 1 0.00
615 273 0.16
616 330 0.20
617 621 0.37
618 448 0.27
619 5 0.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (618 bp):
CCAAAATTTAAGTCTCTAATTTTTGCATGTTTAGACACAAATTGCTTGTTTTCTTTAATGGCTAA
GTGATTTGGATGTATATGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTGGGCACAAGTT
TTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTT
TATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTGATTGGGCCTTACCGTGCACTGCAACGTG
TGGGACCGATCGCTTATAAACTAGGGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCAC
GTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGT
TAGGCTAGATCTGACCTTCGAGGAGAAGCCAGTGCGGATGTTGGACCGTGAGGTGAAGTTACTGA
GGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAACAAGCCACGTGG
GAACACGAAGAGGCAATGCGACAGCAATACCCTCATCTTTTCTTACCAAGTAAATTTTGAGGTCG
AAAGTTTGTTAAAGGGGGTAGAGTTGTAATGCC
Found at i:40977328 original size:568 final size:580
Alignment explanation
Indices: 40976320--40993136 Score: 12712
Period size: 617 Copynumber: 27.3 Consensus size: 580
40976310 ATGTATGTGG
* * * *
40976320 GAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTGGGCACAAGTTTTAGTTTTTCTCTTAGATG
1 GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATG
*
40976385 AATCTGGACACTAGCACTTAGGCCTTTTATATATTAATACTT-TTTTATGACACAAAGAGCCTAT
66 AATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTAT
* * *
40976449 TGGTCCAGTGGTAGGTTGATTGAGCCTTACCGTGCACTGCAACGTGTGGGACCGATCGCTTATAA
131 TGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGCTTATAA
* * *
40976514 ACTAGGGTTTCCTCTGAGATTAGACCAGTTTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTT
196 ACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTT
* * *
40976579 ATCTCTCTGATCCCACTCACATAGTATCAGTTGAGGAGATTGAGGTTAGGCTAGATCTGACCTTC
261 ATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTTC
* *
40976644 GAGGAGAAGCCAGTGCGGATGTTGGACCATGAGGTGAAGTTACTGAGGAAGAAATCTATTCCATT
326 GAGGAGAAGCCAGTGCGGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCCATT
*
40976709 AGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAACAAGCCACGTGGGAACCCGAAGAGGCAATGC
391 AGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCAATGC
* * * * *
40976774 GACAGCAATACCCTTAT-TTTTTTTACCAGGTAAATTTTGAGGTTCAAA-TTTTT-GCA-TGTT-
456 GACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGG-TCAAATTTTTTGGTAGAGTTG
* * * *
40976834 T-A-GACACAAATT-G-CT-TGTTTGC-TTTA-ATGACTAA-G-TGATTTG-GGTGTGTATGA
520 TAATGACACAAATTAGTCTATTTTTGCTTTTAGA-CACAAATGCTG-TTTGTGATGTGTATGA
* *
40976887 GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCTTTGGCACAATTTTTAGTTTTTCTCTTAAGTG
1 GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATG
* *
40976952 AATCTGGACACTGGCTCTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGGCTAT
66 AATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTAT
* * * * *
40977017 TGGTCCAGTGGTAGGTTGATTTGGCCTTAATGTGTACTGCAACATGTGAGACCGATCGCTTAGAA
131 TGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGCTTATAA
* * *
40977082 ACTAGAGTTTCCTCTGAATTTAGACCAGATTCATGATGTGTTTGACGTCTCCATGCTAAGCCGTT
196 ACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTT
* * *
40977147 ATCACTCTGACCCCACTCACATAGTACCAGTTGAGGAGATTGAGATTAGGCCAGATCTGACCTTC
261 ATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTTC
* * * *
40977212 GAAGA-AAGGCCAGTGCGGATTTTAGACTGTGAGGTGAAGTTACTGGGGAAGAAATCTATTCCAT
326 GAGGAGAA-GCCAGTGCGGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCCAT
** * *
40977276 TAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGTTACGTGGGAACCCGAAGACGCAACG
390 TAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCAATG
* * *
40977341 CGACAGTAATACCCTCATATTTTCTGACCAGGTAAATTTTGAGGCTAAAATTTTGTTCAAGGAGG
455 CGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGG-TCAAATTTT-TT------GG
* * * * *
40977406 TAGAGTTGTAA-CACCCCAAAACTTAAGTTTCAATTTTTGCATGTTTTGACGCAAATTGCTCGTT
512 TAGAGTTGTAATGA-CAC-AAA-TT-AG--TCTATTTTTGC-T-TTTAGACACAAA-TG--C---
40977470 TGCTTTAATGGCTAAGTGATTTGGGTGTATGTGA
563 TG---T--T---T--GTGA--T--GTGTA--TGA
* * *
40977504 GAGTGTTTGAGAAGCCTGGGATCAAGTCTTGGCCTTGGCACAATTTTCAGTTTTTCTCTTAAATG
1 GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATG
* ** * * * * *
40977569 AATCTCGATGCTGGCACTAAGGTCTTTTATATATTAATAGTTGTTTTATGATACAGAGAGCCTAT
66 AATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTAT
* * * * *
40977634 TGGTCCAGTGGTAGGCTCATTGGGCCTTACCGTGTACTGAAACGTGTGGGACCGATCACTTATAA
131 TGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGCTTATAA
* * * * * * * *
40977699 AGTTGAGCTTCCACTAAAATTAGACCTGATTCATGATGTGTTTCATGTCTCCATGCTAAGACGTT
196 ACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTT
* *
40977764 ATCGGTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCATATCTGACCTTC
261 ATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTTC
* * *
40977829 GAGGAAAAGCCAGTGCAGATTTTGGACCGTGAGGTGAAGTTACTGAGAAAGAAATCTATTCCATT
326 GAGGAGAAGCCAGTGCGGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCCATT
* * *
40977894 AGTCAAAGTGCTTTGGCGTCATCACAGTTCAGAAGAAGCCACGTGGGAACACGAAGAGGCGATGC
391 AGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCAATGC
* *
40977959 AACAGCAATACCCTCATCTTTTCTGACCAAGTAAATTTTGAGGTCGAAAGTTTGTTAAAGTGGGT
456 GACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGGTC-AAA-TTT-TT----T-GGT
* * *
40978024 AGAGTTGTAACGCCCCAAAAATTAAGTCTCTAATTTTTGCATGTTTAGACACAAATTGCTTGTTT
513 AGAGTTGTAATG--ACACAAATT-AG--TCT-ATTTTTGC-T-TTTAGACACAAA-TGC-----T
*
40978089 GATTTAATGGCTAAGTGATTTGGATGTATATGG
564 G---T--T---T--GTGA--T-G-TG--TATGA
* * ** *
40978122 GAGTGTTTGAGAAGCCTGGCTTCAAGTCTTGGCCTCAGCACAATTTTTAGTATTTCTCTTAAATG
1 GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATG
** *
40978187 AATCTAAACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGGCTAT
66 AATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTAT
* * * * * * *
40978252 TAGTCCAGAGGTAGGTTCATTGGGCCCTATCGTGTACTGCAAAGTGTGGGACCGATCACTTATAA
131 TGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGCTTATAA
*
40978317 ACTAGTGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTT
196 ACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTT
* * *
40978382 ATTGCTCTGATCCCACTCACATAGTACTAGTTGAGGAGATTGAGGTTAGGCTAGATCTGACCTTC
261 ATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTTC
*
40978447 GAGGAGAAGCTAGTGCGG-TTGTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCCAT
326 GAGGAGAAGCCAGTGCGGATT-TTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCCAT
* * * * *
40978511 TAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCTACGTAGGAACACGAAGAGGCGATA
390 TAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCAATG
* *
40978576 CGACAGCAATACCCTCATCTTTTCTGACCAAGTAAATTTTGAGGTCAAAAGTTTGTTAAAGGGGG
455 CGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGGTC-AAA-TTT-TT-----TGG
* * *
40978641 TAGAGTTGTAATGCCCCAAAATTTAAATCTCTAATTTTTGCATGTTTAGACACAAATTGCTTGTT
512 TAGAGTTGTAATGACAC-AAA-TT--A-GTCT-ATTTTTGC-T-TTTAGACACAAA-TGC-TGTT
*
40978706 TGCTTTAATGGCTAAGTGATTTGGA
567 TG---TGAT-G-T--GT-A--T-GA
* *
40978731 TGTATGTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTGGGCACAAGTTTTAGTTTTTC
1 -G-A-GT----GT-TTT-AGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTC
* *
40978796 TCTTAGATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATA-TTTTTTTATGACACAA
57 TCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAA
* * *
40978860 AGAGCCTATTGGTCCAGTGGTAGGTTGATTGGGCCTTACCGTGCACTGCAACGTGTGGGACCGAC
122 AGAGCCTATTGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGAT
* *
40978925 CGCTTATAAACTAGGGTTTCCTCTGAAATTAGACCAGTTTCATGATGTGTTTCACGTCTCCATGC
187 CGCTTATAAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGC
* * * * *
40978990 TAAGGCGTTATCTCTCTGATCCCACTCACATAGTATCAGTTGAGGAGATTGCGATTAGGCTAGAT
252 TAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGAT
*
40979055 CTGACCTTCGAGGAGAAGCCAGTGCGGATGTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATC
317 CTGACCTTCGAGGAGAAGCCAGTGCGGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATC
* *
40979120 TATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAACAAGCCATGTGGGAACCCGAAG
382 TATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAG
* * * *
40979185 AGGCAATGCGACATCAATACCCTTAT-TTTTTTTACCAGGTAAATTTTGAGGTTCAAATTTTGTT
447 AGGCAATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGG-TCAAA-TTT-TT
* *
40979249 AAAGTGGTAGAGTTGTAATGCCCAAAAATATAAGTCTCTAATTTTTGCATGTTTAGACACAAATT
509 ----TGGTAGAGTTGTAATG-ACACAAAT-T-AG--TCT-ATTTTTGC-T-TTTAGACACAAA-T
40979314 GCTTGTTTGCTTTAATGACTAAGTGATTTGGGTGTGTATGA
561 GC-----TG---T--T---T--GTGA------TGTGTATGA
40979355 GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATG
1 GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATG
* *
40979420 AATCTGGACACTGGCCCTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGGCTAT
66 AATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTAT
*
40979485 TGGTCCAGTGGTAGGTTGATTTGGCCTT-A-GTGGTA--G----GT-T------GA-----T-T-
131 TGGTCCAGTGGTAGGTTGATTGGGCCTTAACGT-GTACTGCAACGTGTGGGACCGATCGCTTATA
* * * *
40979528 ---T-G-G---CCTTTGAAATTAGACCAGAGTCATGATTTGTTTCACGTCTCCATACTAAGGCGT
195 AACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGT
* * *
40979585 TATCGCTCTTATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGACCTAACCTT
260 TATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTT
* * * * *
40979650 CGAGGAGAAGCTAGTGCGAATTTTGGACTGTGAGGTTACA-TTACTAAGGAAGAAATCTATTCCA
325 CGAGGAGAAGCCAGTGCGGATTTTGGACCGTGAGGTGA-AGTTACTGAGGAAGAAATCTATTCCA
* * * *
40979714 TTAATAAAAGTGCTTTGGCATAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGAT
389 TTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCAAT
** * * * * *
40979779 GCGGTAGCAATACCCTCATCTTTTTTGACTAGGTAAATTTCGACGCTGAAATTTTGTTAAAAGGG
454 GCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGA-GGTCAAATTTT-TT------G
* * *
40979844 GTAGAGTTGTAACG-CCCTAAAATTTAAGTGTCTAATTTTTGCATTTTTGACACAAATTGCTTGT
511 GTAGAGTTGTAATGACAC--AAA-TT-A--GTCT-ATTTTTGC-TTTTAGACACAAA-TGC-TG-
*
40979908 TTTTCTTTAGTGGCTAAGAGATTTTGGTGTGTATGT
565 ------TT--T-G-T----GA------TGTGTATGA
* * * *
40979944 GAGTGTGTGAGAAGCCTGGGTTCAAGTCATGGCCTTGGC-CTAATTTTTTACTTTTTCTCTTAAA
1 GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCAC-AA-TTTTTAGTTTTTCTCTTAAA
* * * * *
40980008 TGAATTTGGACAGTGGCACTTAGGCCTTTTATATGTGAATACTTGATTTATGACACAAAGAGCCT
64 TGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
* * *
40980073 ATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCAATCG-TATA
129 ATTGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGCT-TA
* * ** * * * *
40980137 TAACCTTGAGTTGACGCAT-AAATTAGACCAGATTAATGATGTGTTTCACGTGTCCATGCTAAGT
193 TAAACTAGAGTTTCCTC-TGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGG
* * * *
40980201 TGTTATCGCTCTGATCCCACTCACATGGTACCAGTTGAAGAGATTAAGGTTAGGCCAGATCTGAC
257 CGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGAC
* ** * *
40980266 CTTCGAGGAGAAGCCAGTGCAGG-TTTTGTACTATGAGGCGAAGTTATTG-GGAAAGAAATCTAT
322 CTTCGAGGAGAAGCCAGTGC-GGATTTTGGACCGTGAGGTGAAGTTACTGAGG-AAGAAATCTAT
* * *
40980329 TCCATTACTCAAAGTGCTTTGGCATAATCACAGTTCAGAAGAAGCCACGTGGGACCCCGAAGAGG
385 TCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGG
* * * * * *
40980394 CGATGCAACAGCAATACCCTCATCTTTTTTGACCAGATAAATTTCGAGGCTGAAATTTTGTTAAA
450 CAATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGG-TCAAATTTT-TT---
* * * * **
40980459 GGGGGTAGAGTTGTAATGCCCCAAAATTTGTCTCAAATTTTTGCATGTTTTGACTGAAATTGCTT
510 ---GGTAGAGTTGTAATGACAC-AAATTAGTCT---ATTTTTGC-T-TTTAGACACAAA-TGC--
* *
40980524 ATTTGCTTCAATGCCTAAGTGATTTAGGTGTCTGTGG
563 ---TG--T---T---T--GTGA--T--GTG--TATGA
* * * * *
40980561 GAGTGTTTGACAAACATGGGTTCAATTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATG
1 GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATG
* * *
40980626 AATCTAGG-CACTGTCACTTAGGCCTTTTATATATTAATATTTGTTTTATGACACAGAGAGCCTA
66 AATCT-GGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTA
* * * * *
40980690 TTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTTTGGGACTGATCGCATATA
130 TTGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGCTTATA
* * * *
40980755 AACTTGAGTTGCCTCTGAAATTAGACTAGATTAATGATGTGTTTCACGTCTCCATGCTAAGGCGT
195 AACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGT
* * * **
40980820 TATTGCTCTGATCCCACTCACATAGTACTAGTTGAAGAGATTGAGGTTATTCCAGATCTGACCTT
260 TATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTT
* * * * **
40980885 CGAGGAGAAGCCAGTGCAGATTTTGTACCGTGAGGCGAAGTTATTGAAAAAGAAATCTATTCCAT
325 CGAGGAGAAGCCAGTGCGGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCCAT
* *
40980950 TAGTCAAAGTGCTTTGGCATAATCACAGTTCAGAAGAAACCACGTGGGAACCCGAAGAGGCAATG
390 TAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCAATG
* * *
40981015 CGACAGCAATACCTTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTCTTAAAGGGGT
455 CGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGG-TCAAATTTT-TT-----GGT
* * * *
40981080 AGAGTTGTAACG-CCCTAAAATTTAAGTTTCAATTTTTTGCATGTTTTGACACAAATTGCTTGTT
513 AGAGTTGTAATGACAC--AAA-TT-AG--TCTA-TTTTTGC-T-TTTAGACACAAA-TGC-----
* *
40981144 TGCATTAATGGCTAAGTGATTTAGGTGTCTGTGG
563 TG---T--T---T--GTGA--T--GTG--TATGA
* * *
40981178 GAGTGTTTGACAAACCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATG
1 GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATG
* *
40981243 AATCTAGG-CACTGGCACTTAGGCCTTTTATATATTAATATTTGTTTTCTGACACAAAGAGCCTA
66 AATCT-GGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTA
* * * * * * *
40981307 TTGGTCCAGTGGTTGGTTCATTGAGCCTTACCGTGTACTACAACGTGTGGGACTGATCGCATATA
130 TTGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGCTTATA
* * * * * * * *
40981372 AACTTGAGTTGCCTCTGAAATTAAACTAGATTAATGATGTGTTTCAGGTCTCCATGCTTAGGCAT
195 AACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGT
* * **
40981437 TATCGCTCTGATCCCACTCACATAGTACCAGTTGAAGAGATTTAGGTTATTCCAGATCTGACCTT
260 TATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTT
* * * * *
40981502 CGACGAGAAGCCAGTGCAGATTTTGTACCGTGAGGTGAAGTTATTGAGAAAGAAATCTATTCCAT
325 CGAGGAGAAGCCAGTGCGGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCCAT
* *
40981567 TAGTCAAAGTGCTTTGGCATAATCACAGTTCAGAAGAAACCACGTGGGAACCCGAAGAGGCAATG
390 TAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCAATG
* * *
40981632 CGACAACAATACCCTCATCTTTTCTGGCCAGG-AAATTTTGAGGCTGAAATTTTGTTAAAGGGGT
455 CGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGG-TCAAATTTT-TT-----GGT
* * *
40981696 AGAGTTGTAACG-CCCTAAAATTCGAGTTTCTAATTTTTGCATTTTTTGACACAAATTGCTTGTT
513 AGAGTTGTAATGACAC--AAATT--AG--TCT-ATTTTTGC--TTTTAGACACAAA-TGC-----
*
40981760 TGCTTTAATCGCTAAGAGATTTTCGTGTGTATGT
563 TG--TT--T-G-T----GA------TGTGTATGA
* * * * * *
40981794 GAGTGTTTGAGAAGCCTGGGTTCAAGCCATGGCCTTGCCCCGATTTTTTAGTTTTTCTCTTAAAT
1 GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCAC-AATTTTTAGTTTTTCTCTTAAAT
* *
40981859 GAATCT-GACACTAGCACTTAGGCCTATTATATATTAATACTTGTTTTATGACACAAAGAGCCTA
65 GAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTA
* * * * * *
40981923 TTGGTCCAGTGGCAGGTTCATTGGGCATTACCGTGTACTGAAACGTGTGGGCCCGATCGCTTATA
130 TTGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGCTTATA
* * * * *
40981988 AA-TAAGAGTTTCCTCTAAAATTAGACCA-AGGTCAAGATTTGTTTCACGTCTCTATGCTAAGGC
195 AACT-AGAGTTTCCTCTGAAATTAGACCAGA-TTCATGATGTGTTTCACGTCTCCATGCTAAGGC
* * * *
40982051 GTTATCGCTCTGATCCCACTCGCATAGTACCATTTGAAGAGATTGAGGTTAGGCCATATCTGACC
258 GTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACC
* ** * * * *
40982116 ATCGAGGAGAAGCCAGTGTAGA-TTTAGACCGTGAGGTTACGTTACTGAGGAAGAAACCTATTCC
323 TTCGAGGAGAAGCCAGTGCGGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCC
* * * *
40982180 ATTCGTCAAAGTGCTTTCGCATAATCACAG-TCTAGAAGAAGCCACGTGGGAACCCGAAGAGGCG
388 ATTAGTCAAAGTGCTTTGGCGTAATCACAGTTC-AGAAGAAGCCACGTGGGAACCCGAAGAGGCA
* * * * *
40982244 ATGCGACAGCAATACCTTCATCTTTTCTTACCAGGTAAATTTCGAGGCTAAAATTTGTTAAACGG
452 ATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGG-TCAAATTT-TT----TG
* * * *
40982309 GTTAGAGTTGTAACG-CCCTAAAATTTAAGTTTCTAACTTTTGCATTTTTTGACACAAATTGCTT
511 G-TAGAGTTGTAATGACAC--AAA-TT-AG--TCT-ATTTTTGC--TTTTAGACACAAA-TGC--
*
40982373 GTTTGCTTTAATCGCTAAGAGATTTTGGTGTGTATGT
563 ---TG--TT--T-G-T----GA------TGTGTATGA
* * * *
40982410 GAGTGTTTGAGAAGCCTAGGTTCAAGTCATGGCCTTGGCCCAATTTTTTAGTTTTTCTCTTAAAT
1 GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTTAGTTTTTCTCTTAAAT
* *
40982475 GAATCTGGTCACTGGCACTTAGGCCTTTTATATATTAATACTTTTTTTATGACACAAAGAGCCTA
65 GAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTA
* * * *
40982540 TTGGTCCAGTGGTAGGTTCATTGGGCATTACCGTGTACTGAAACGTGTGGGACCGATCGCTTATA
130 TTGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGCTTATA
* * ** * *
40982605 AACAAGAGTTTCCTCTAAAATTAGACCAGGGTCATGATTTGTTTCACGTCTCCATTCTAAGGCGT
195 AACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGT
* *
40982670 TATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTAACCAT
260 TATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTT
* * * * *
40982735 CGAGGAGAAGCCAGTGCAGCTTTTGGACCGTGAGGTTACGTTACTGAGGAAGAACTCTATTCCAT
325 CGAGGAGAAGCCAGTGCGGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCCAT
* * * * * * * *
40982800 TAGTCAAAGGGCTTTTGCATAATCACAGTCCAAAAAAAGCCACGTAGGAACCCGAACAGGCAATG
390 TAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCAATG
* *
40982865 CGACAGCAATACCTTCATCTTTTCTGACCAGGTAAATTTTGAGGCTGAAATTTTGTTAAACGGGG
455 CGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGG-TCAAATTTT-TT------GG
* * * * *
40982930 TTGAGTTGTAACG-CCCTAAAATTTAAGTTTCTAAATTTTGCATTTTTTGACACAAATTGCTTGT
512 TAGAGTTGTAATGACAC--AAA-TT-AG--TCT-ATTTTTGC--TTTTAGACACAAA-TGC-TGT
*
40982994 TTGCTTTAATCACTAAGAGATTTTGTTCTGTATGT
566 TTG----------T----GA---TG---TGTATGA
* * * * *
40983029 GAGTGTTTGAGAATCCTGGGTTCAAGTCATGGCCTTGGCCCATTTTTTAGTTTTTCTCTTAAATG
1 GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATG
* * *
40983094 AATCTGGACTCTGGCACTTAGTCCTTTTATATATTAATACTTGTTTTATGACACAAAAAGCCTAT
66 AATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTAT
* * * *
40983159 TGGTCCA-TGGTAGGTTCATTGGGCATTACCGTGTACTGAAACGTGTGGGACCGATCGCTTATAA
131 TGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGCTTATAA
* ** ** * *
40983223 ACAAGAGTTTCCTCTGAAATTAGACCAGGGTCGCGATTTGTTTCACGTCTCCATTCTAAGGCGTT
196 ACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTT
* *
40983288 ATCGCTCTGATCCCACTCACATAGTACCGGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCATC
261 ATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTTC
* * * *
40983353 GAGGAGAAGCCAGTGCAGCTTTTGGACCGTGAGGTTACA-TTACTGAGGAAGAACTCTATTCCAT
326 GAGGAGAAGCCAGTGCGGATTTTGGACCGTGAGGTGA-AGTTACTGAGGAAGAAATCTATTCCAT
* * * * * * * * *
40983417 TAGTCAAAGTGCTTTTGTGTAATTACAGTCCAGAAAAAGCCACGTAGGAACTCGAACAGGCAATA
390 TAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCAATG
* *
40983482 CGACAGCAATACCTTCATCTTTTCTGACCAGGTAAATTTTGAGGCTGAAATTTTGTTAAACGGGG
455 CGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGG-TCAAATTTT-TT------GG
* * * * *
40983547 TAGATTTGTAACG-CCCTAAAATTTAAGTTTCTAACTTTTGCATTTTTTGACACAAATTGCTTGT
512 TAGAGTTGTAATGACAC--AAA-TT-AG--TCT-ATTTTTGC--TTTTAGACACAAA-TGC-TGT
*
40983611 TTGCTTTAATCACTAAGAGATTTTGGTCTGTATGT
566 TTG----------T----GA---T-G--TGTATGA
* * * *
40983646 GAGTGTTTGAGAATCCTGGGTTCAAGTCATGGCCTTGGCCCAATTTTTTAGTTTTTCTCTTAAAT
1 GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTTAGTTTTTCTCTTAAAT
* *
40983711 GAATCTGGACTCTGGCACTTAGTCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTA
65 GAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTA
* * * *
40983776 TTGGTCCA-TGGTAGGTTCATTGGGCATTACCGTGTACTGAAACGTGTGGGACCGATCGCTTATA
130 TTGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGCTTATA
* * ** * * * * *
40983840 AACAAGAGTTTCCTCTGAAATTAGACAAGGGTCGTGATTTGTTTCACTTCTCCATTCTAAGGTGT
195 AACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGT
* *
40983905 TATCGCTCTGATCCCACTCATATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCAT
260 TATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTT
* * * *
40983970 CGAGGAGAAGCCAGTGCAGCTTTTGGACCGTGAGGTTACGTTACTGAGGAAGAAATCTATTCCAT
325 CGAGGAGAAGCCAGTGCGGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCCAT
* * *
40984035 TAGTCAAAGTGCTTTCGCGTAATCACAGTTCAGAAAAAGCCACGTGGGAACCCGAACAGGCAATG
390 TAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCAATG
* * * *
40984100 CGACAGCAACACCTTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTAAACGGGG
455 CGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGG-TCAAATTTT-TT------GG
* *
40984165 TAGA-TT-TATATCG-CTTCAAAATTTAAGTCTCTAATTTTTGCATGTTTAGGCACAAACTGCTT
512 TAGAGTTGTA-AT-GAC-AC-AAA-TT-AG--TCT-ATTTTTGC-T-TTTAGACACAAA-TGC--
* *
40984227 GTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTGTG
563 ---TG---T--T---T--GTGA--T--GTGTATG-A
* * * *
40984263 GCAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGGACAATTTTTTGTTTTTCTCTAAAAT
1 G-AGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAAT
* ** * * *
40984328 GGATCCAGACACTGGCACTTAGGCCTTTTATTTATTAATACTAGTTTTATGAGACAAAGAGCCTA
65 GAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTA
* * *** * * *
40984393 TTGGTCCAGTGGTAGGTTTAGTGGATGTTATCGTGTACCGCAACGTGTGGTACCGATCGCTTATA
130 TTGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGCTTAT-
* * *
40984458 AAATTA-AGTTACCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGACTCCATGCTAAGGCG
194 AAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCG
* * * * * *
40984522 TTATCGCTCTGATCCCACTCACATAGTACTAGTTGAAGAAATTGAGGTTAGGCAAGATTTCACCT
259 TTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCT
* * ** ** ** * *
40984587 TTGAGGAGATGCCAAAGAAGATTTCAGACCGTGAGTTTGAAG-TACTGAGGAAGGAATCTATTCC
324 TCGAGGAGAAGCCAGTGCGGATTTTGGACCGTGAG-GTGAAGTTACTGAGGAAGAAATCTATTCC
* * * * * * * **
40984651 ATTAGTCAAAGTGCTTTGGCGTAATCACAATACAAAAGAAGCCACGCGAGAAACCGAAGTGGTGA
388 ATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCAA
* * * ** *
40984716 T-CTGACTA-CAATAACCTCATTTTTTCTGGCCAGGTAAATTTCAAGGCTGAAATTTTGTTAAAT
453 TGC-GAC-AGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGG-TCAAA-TTT-TT---T
* * * * * *
40984779 GGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTGGCATGTTTTGAAACAAATTGCT
510 --GGTAGAGTTGTAATGACAC-AAA-TT-AG--TCT-ATTTTTGC-T-TTTAGACACAAA-TGC-
40984844 TGTTTTCTTTAATGGCTAAGTGATTTGGGTGTGTAT-A
563 TG-------T--T---T--GTGA------TGTGTATGA
*
40984881 GGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTTAGTTTTTCTCTTAAA
1 -GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTTAGTTTTTCTCTTAAA
* *
40984946 TAAATCTGGACACTCGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
64 TGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
* * * * * * * *
40985011 ACTGGTCTAGTGGTAGGTTCATTGGGCCTTACCGTGTAGTGCAACGTGTGGGACTGATAGCATAT
129 ATTGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGCTTAT
* * * * * * *
40985076 AAACTTGAGTTGCCTCTAAAATTAGACCAAATTAATGATGTGTTTCACATCTCCATGCTAAGGTG
194 AAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCG
* * **
40985141 TTATCGCTCTGATGCCACTCACATAGTACCAGTTGATGAGATTGAGGTTATTCCAGATCTGACCT
259 TTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCT
* * * * * *
40985206 TCGAGGAGAAGCTAGTGTAGG-TTTTGTACCGTGAGGCGAAGTTATTGAGAAAGAAATCTATTCC
324 TCGAGGAGAAGCCAGTG-CGGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCC
* * *
40985270 ATTAGTCAAAGTGCTTTGGCATAATCACAGTTCAGAAGAAACCACGTGGGAACCCGAAGAGGTAA
388 ATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCAA
* * * *
40985335 TGCGACAACAATACCCTCATCTTTTCTGGCCAGG-AAATTTCGAGGCTGAAATTTTGTTAAAGGG
453 TGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGG-TCAAATTTT-TT-----G
* * *
40985399 GTAGAGTTGTAACG-CCCTAAAATTTGAGTTTCTAATTTTTGCATTTTTTGACACAAATTGCTTC
511 GTAGAGTTGTAATGACAC--AAA-TT-AG--TCT-ATTTTTGC--TTTTAGACACAAA-TG---C
* *
40985463 TTTGCTTTAATCACTAAGAGATTTTCGTGTGTATGT
563 --TG---T--T---T--GTGA------TGTGTATGA
* * * *
40985499 GAGTGTTTGAGAAGCCTGGGTTCAAGTCATGGCCTTGCCCCAATTTTTTAGTTTTTCTCTTAAAT
1 GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTTAGTTTTTCTCTTAAAT
* * * *
40985564 GAATCT-AACACTAGCACTTAGGCCTATTATATATTAATACTTATTTTATGACACAAAGAGCCTA
65 GAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTA
* * * ** * * *
40985628 TTGGTCCAGTGGCAGGTTCATTGGGCATTGCCGTGTACTGAAACATGTGGGACCGATCACTTATA
130 TTGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGCTTATA
* * ** * * *
40985693 AACAAGAGTTTCCTCTAAAATTAGACCAGGGTCATGATTTGTTTCACGTCTCTATGCTAAGGTGT
195 AACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGT
* * * * **
40985758 TATCGCTCTGATCCCACTCATATAGTACCAATTGAAGAGATTGAGGTTAGGCCACATCTGACCAA
260 TATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTT
* * * * * *
40985823 CGAGGAGAGGCCAGTACAGATTTTAGACCGTGAGGTTACGTTACTGAGGAAGAAATCTATTCCAT
325 CGAGGAGAAGCCAGTGCGGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCCAT
* * *
40985888 TCGTCAAAGTGCTTTCGCGTAATCACAGCTT-AGAAGAAGCCACGTGGGAACCCGAAGAGGCGAT
390 TAGTCAAAGTGCTTTGGCGTAATCACAG-TTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCAAT
* ** * *
40985952 GCGACAGCAATACCTTCATCTTTTCTGATAAGGTAAATTTCGAGGCTAAAATTTTGTTAAACGGG
454 GCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGG-TCAAATTTT-TT-----GG
* * * *
40986017 TTAGAGTTGTAACG-CCCTAAAATTTAAGTTTCTAACTTTTGCATTCTTTGACACAAATTCCTTG
512 -TAGAGTTGTAATGACAC--AAA-TT-AG--TCT-ATTTTTGC-TT-TTAGACACAAA-----TG
* * *
40986081 TTTGCTTTAATCGCTAAGAGATTTTGGTGTGTGTGT
562 -CTG--TT--T-G-T----GA------TGTGTATGA
* * *
40986117 GAGTGTTTGAGAAGCCTGGGTTCAAGTCATGGCCTTGGCCCAATTTTTTAGTTTTTCTCTTAAAT
1 GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTTAGTTTTTCTCTTAAAT
* * * * *
40986182 GAATCTGGACACTGGCACATAGTCCTTTTATAAATTAACACTTTTTTTATGACACAAAGAGCCTA
65 GAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTA
* * * * * * *
40986247 TTGGTCCAGTGGTAGGTTCATTGGGCATTACCGTGTATTGAAATGTGTGGGATCGATCGCTTATA
130 TTGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGCTTATA
* ** * *
40986312 AACAAGAGTTTCCTCTGAAATTAGACCAGGGTCATGATTTGTTTCACGTCTCCATTCTAAGGCGT
195 AACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGT
* * *
40986377 TATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGTTTGAGGTTAGGCCACATCTGACCAT
260 TATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTT
* * * *
40986442 CGAGGAGAAGCCAGCGCAGCTTTTGGACCGTGAGGTTG-CGTTACTGAGGAAGAAATCTATTCCA
325 CGAGGAGAAGCCAGTGCGGATTTTGGACCGTGAGG-TGAAGTTACTGAGGAAGAAATCTATTCCA
* * *
40986506 TTAGTCAAAGTGCTTTCGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAACAGGCGAT
389 TTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCAAT
* * *
40986571 GCGACAGCAATACCTTCATCTTTTCTGACCAGGTAAATTTTGAGGCTAAAATTTTGCTAAACGGG
454 GCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGG-TCAAATTTT--T-----TG
* * * * *
40986636 GTAGAGTTGTAACG-CCCTAAACTTTAAGTTTCTAACTTTTGCATTTTTTGACACTAATTGCTTG
511 GTAGAGTTGTAATGACAC-AAA--TT-AG--TCT-ATTTTTGC--TTTTAGACAC-AAATGC-TG
*
40986700 TTTGCTTTAATCACTAAGAGATTTTGGTGTGTATGT
565 TTTG----------T----GA------TGTGTATGA
* * * * * *
40986736 GAGTGTTTGAGAATCTTGGGTTCAAGTCATGGCCTTGGCCCAATTTTTTAATTTTTCTCTTAAAT
1 GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTTAGTTTTTCTCTTAAAT
* * *
40986801 AAATCTGGACTCTGGCACTTAGTCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTA
65 GAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTA
* * * *
40986866 TTGGTCCAGTGGTAGGTTCATTGGGCATTACCGTGTACTGAAACGTGTGGGACCGATCGCTTATA
130 TTGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGCTTATA
* * ** * * * *
40986931 AACAAGAGTTTCCTCTGAAATTAAACCAGGGTCGTGATTTGTTTCACGTCTCCATTCTAACGCGT
195 AACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGT
* * *
40986996 TATCGCTCTGATCCCACTCAGATAGTACCAGTTGAGGAGTTTGAGGTTAGGCCAGATCTGACCAT
260 TATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTT
* * * * *
40987061 CGAGGAGAAGCCAGTGC-AACTTTTGGACCGTGAAGTTACGTTACTAAGGAAGAAATCTATTCCA
325 CGAGGAGAAGCCAGTGCGGA-TTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCCA
* * * * *
40987125 TTAGTCAATGTGCTTTCGCGTAATCACAGTTCAAAAGAAGGCACGTGGGAACCCGAAGAGGCGAT
389 TTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCAAT
* * * * ** * * * * *
40987190 GCGACAGTAATACCTTAATATTTTCAAATCTGGTAAATTTCGGGGCTAAAATTTTCTTAAAGTGG
454 GCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGG-TCAAA-TTT-TT----T-G
* *
40987255 GTAGA-TT-TATATCG-CTTAAAAATTTAAGTCTCTAATTTTTGCATGTTTAGGCACAAACTGCT
511 GTAGAGTTGTA-AT-GAC--ACAAA-TT-AG--TCT-ATTTTTGC-T-TTTAGACACAAA-TGC-
* *
40987317 TGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTGTG
563 ----TG---T--T---T--GTGA--T--GTGTATG-A
* * *
40987354 GCAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGGACAATTTTTTGTTTTTCTCTTAAAT
1 G-AGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAAT
* * * *
40987419 GGATCT-GACACTGGCATTTAGGCCTTTTATATATTAATACTAGTTTTATGAGACAAAGAGCCTA
65 GAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTA
* * * * *
40987483 TTGGTCCAGTGGTAGGTTTATTGGACGTTACCGTGTACCGCAACGTGTGGGACCGATCGCTTATA
130 TTGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGCTTATA
* * * *
40987548 AACTTGAGTTACCTCTGAAATTAGACCAGAGTCATGATGTGTTTCACGTGTCCATGCTAAGGCGT
195 AACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGT
* * * * * *
40987613 TATCGCTCTGATCCCACTCACATAGTACTAGTTGAAGAAATTGAGGTTAGGCAAGATTTCACCTT
260 TATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTT
* * ** ** ** * *
40987678 TGAGGAGATGCCAAAGAAGATTTCAGACCGTGAGTTTGAAG-TACTGAGGAAGGAATCTATTCCA
325 CGAGGAGAAGCCAGTGCGGATTTTGGACCGTGAG-GTGAAGTTACTGAGGAAGAAATCTATTCCA
* * * * * * *
40987742 TTAGTCAAAGTGCTTTGGTGTAATCACAGTACAAAAGAAGCCACGCGGGAAACCGAAGTGGCGAT
389 TTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCAAT
* * * * * *
40987807 GTGACTA-CAATACCCTCATTTTTTTTGGCCAGGTACATTTCGAGGTCAAAATTTTGTTAAATGG
454 GCGAC-AGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGGTC-AAA-TTT-TT---T--
* * * * *
40987871 GGTAGAGTTATAACG-CGCCAAAATTTAAGTCTTTAATTTTTGAATGTTTTGACACAAATTGCTT
510 GGTAGAGTTGTAATGAC-AC-AAA-TT-AGTC--T-ATTTTTG-CT-TTTAGACACAAA-TGC-T
40987935 GTTTTCTTTAATGGCTAAGTGATTTGGGTGTGTAT-A
564 G-------T--T---T--GTGA------TGTGTATGA
* *
40987971 GGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTTGTTTTTCTCTTAAAT
1 -GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAAT
* * * * *
40988036 GGATCTGGACACTGGCATTTAGGCCTTTTATATATTAATACTAGTTTTATGAGATAAAGAGCCTA
65 GAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTA
* * * * *
40988101 TTGGTCCAGTGGTAGGTTTATTGGACGTTACCGTGTACCGCAACGTGTGGGACCGATCGCTTATA
130 TTGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGCTTATA
* *
40988166 AACTTGAGTTACCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGT
195 AACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGT
* * * * * *
40988231 TATCGCTCTGATCCCACTCACATAGTACTAGTTGAAGAAATTGAGGTTAGGCAAGATTTCACCTT
260 TATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTT
* * * ** ** ** * *
40988296 TGAAGAGATGCCAAAGAAGATTTCAGACCGTGAGTTTGAAG-TACTGAGGAAGGAATCTATTCCA
325 CGAGGAGAAGCCAGTGCGGATTTTGGACCGTGAG-GTGAAGTTACTGAGGAAGAAATCTATTCCA
* * ** * * *
40988360 TTAGTCAAAGTGCTTTGGCGTAATCACAGTACAAAAGAAGCCACGCAGGAAACCGAAGTGGCGAT
389 TTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCAAT
* * * *
40988425 GTGACTA-CAATACCCTCATTTTTTCTGGCCAGGTAAATTTCGAGGTCAAAATTTTGTTAAATGG
454 GCGAC-AGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGGTC-AAA-TTT-TT---T--
* * * *
40988489 GGTAGAGTTATAACG-CACCAAAATTTAAGTCTTTAATTTTTGAATGTTTTGACACAAATTGCTT
510 GGTAGAGTTGTAATGACA-C-AAA-TT-AGTC--T-ATTTTTG-CT-TTTAGACACAAA-TGC-T
40988553 GTTTTCTTTAATGGCTAAGTGATTTGGGTGTGTAT-A
564 G-------T--T---T--GTGA------TGTGTATGA
*
40988589 GGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTTAGTTTTTCTCTTAAA
1 -GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTTAGTTTTTCTCTTAAA
* * *
40988654 TGAATCTGGACATTGGAACTTAGGCCTTTTATATATTAATACTTTTTTTATGACACAAAGAGCCT
64 TGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
* *
40988719 ATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTAT
129 ATTGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGCTTAT
* *
40988784 AAACTTA-AGTTGCCTCTAAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGC
194 AAAC-TAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGC
* *
40988848 GTTATTGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGTTTGAGGTTAGGCCAGATCTGA-C
258 GTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACC
* * * * * * * * *
40988912 TATCTAGGAGAAGCCAGTACAGCTTTGGGACCGTGAAGTTACGTTACTGAGAAAGAAATCTATTC
323 T-TCGAGGAGAAGCCAGTGCGGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTC
* * ** *
40988977 CATTAGTCAAAGTGCTTTCGCGTAATCACAGTTCAGACGAAGCCACACGGGAACCCGAATAGGCA
387 CATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCA
* * ** * *
40989042 ATGCGACAGCAATACCTTAATCTTTTCAAACCAGGTAAATTTCGAGGCTGAAATTTTGTTAAAGG
452 ATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGG-TCAAATTTT-TT-----
* *
40989107 GGGTAGA-TT-TATATCG-CTTCAAAATTTAAGTCCCTAATTTTTGCATGTTTAGGCACAAACTG
510 -GGTAGAGTTGTA-AT-GAC-AC-AAA-TT-AGT--CT-ATTTTTGC-T-TTTAGACACAAA-TG
*
40989169 CTTGTTTGCTTTATTGGCTAAGTGTTTGGGTGTGTGTGA
562 C-TGTTTG------T-G---A---------TGTGTATGA
* * * * * *
40989208 CATTGTTTGAGAAGCCTGGGCTCAAGTCTTGTCCTTGGGACAATTTTTTA-TTTTTCTCTTAAAT
1 GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTTAGTTTTTCTCTTAAAT
* * * *
40989272 GGATCTGGACACTGGCACTTAGGCCTTTTATATATTCATACTAGTTTTATGAGACAAAGAGCCTA
65 GAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTA
* * * * *
40989337 TTGGTCTAGTGGTAGGTTTATTGGGCGTTACCGTGTACCGCAACGTGTGGGACCGATCGCTTATA
130 TTGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGCTTATA
* * * * *
40989402 AACTTGAGTTGCCTTTAAAATTAGACCAAATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGT
195 AACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGT
* * * * * *
40989467 TATCGCTCTGATCCCACTCACATAGTA-CTGTTGAAGAAATTGAGGTTAGGCAAGATTTCACCTT
260 TATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTT
* * ** ** * * * * *
40989531 TGAGGAGATGCCAAAGAAGATTTCGGACCGTGAGTTTAAAG-TACTGGGGAAGGAATCTATTCCA
325 CGAGGAGAAGCCAGTGCGGATTTTGGACCGTGAG-GTGAAGTTACTGAGGAAGAAATCTATTCCA
* * * * * * *
40989595 TTAGTCAAAGTGCTTTCGCGTAATCACAGTACAAAAGAAGCCACGCGGGAAACCGAAGGGGCGAT
389 TTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCAAT
* ** * *
40989660 GTGACTA-CAATACTGTCATCTTTTCTGGCCAGGTAAATTTCGAGGTCAAAATTTTGTTAAATGG
454 GCGAC-AGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGGTC-AAA-TTT-TT---T--
* ** *
40989724 GGTAGAGTTGTAACG-CACCAAAATTTAAGTCTTTAATTTTTTAATGTTTTGACACAAATTGCTT
510 GGTAGAGTTGTAATGACA-C-AAA-TT-AGTC--T-A-TTTTTGCT-TTTAGACACAAA-TGC-T
*
40989788 GTTTGCTTTAATGGCAAAGTGATTTGGGTGTGTATA
564 GTTTG------T-G---A-TG---T--GTATG---A
* *
40989824 GTAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTTTGTTTTTCTCTTAAA
1 G-AGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTTAGTTTTTCTCTTAAA
*
40989889 TGAATCTGGACACTGGAACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
64 TGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
* * * ** *
40989954 ATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGAGTACTAAAACGTGTGGGACCGATTGCTTAT
129 ATTGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGCTTAT
* * *
40990019 AAACTAGAGTTTCCTCTAAAATTAGACTAGAGTCATGA----TTT---GT-T---T-C--A--C-
194 AAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCG
* * ** *
40990067 --A---CTCAGATCCCACTCACATAGTACCAGTTGAAGAGATTGAGGTTATTCTAGATCTGACCT
259 TTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCT
* * * * *
40990127 TCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGAGGTGAAGTTATTAAGAAAGAAATCTATTCCA
324 TCGAGGAGAAGCCAGTGCGGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCCA
* * * * *
40990192 TTAGTCAAAGTGCTTTGCCATAATCATAGTTCAAAAGAAGCCACGTGGGAACCCGAAGAGGCGAT
389 TTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCAAT
* * * *
40990257 ACGACAGTAATACCCTCATCTTTTTTGACCAGGTAAATTTCGAGG-CAGAAATTTTGTTAAGTGG
454 GCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGGTC--AAA-TTT-TT---T--
* * * * * *
40990321 GGAAGATTTGTAACGCCTCAAAAGTTAAGTCTATAATTTTTGCATGTTTTGACACAAATTGCTTG
510 GGTAGAGTTGTAATGACAC-AAA-TT-AGTC--T-ATTTTTGC-T-TTTAGACACAAA-TGC---
* *
40990386 TTTGCTTTAATGGTTAAGTGATTTGGGTGTGTGGGG
563 --TG------T--TT--GTGA--T--GTGTAT--GA
* *
40990422 GAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAATTG
1 GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATG
* *
40990487 AATCTGAACACTGGCATTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTAT
66 AATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTAT
* * * *
40990552 TGGTCCAGTGGTAGGTTCATTGGGCCTTACCGAGTACTGCAACGTGTGGGACCGATCACTTATAA
131 TGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGCTTATAA
* * * * *
40990617 AATTGAGTTGCCTTTGAAATTAGACCAGATTCATGTTGTGTTTCACGTCTCCATGCTAAGGCGTT
196 ACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTT
* *
40990682 ATCGCTCTGATCCCACTCACATAGTACTAGTTGAGGATATTGAGGTTAGGCCAGATCTGACCTTC
261 ATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTTC
* * *
40990747 GAGGAGAAGCCAGTGCGAATTTTGCACCGTGAGGTTAAGTTACTGAGGAAGAAATCTATTCCATT
326 GAGGAGAAGCCAGTGCGGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCCATT
* * * *
40990812 AGTCAAAGGTGCTTTGGCGTAATCACAATTCAAAAGAAGCCACGTGGGAACCTGAAGAGGCGATG
391 AGTCAAA-GTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCAATG
* * ** *
40990877 CGACAGCAATACCCTCGTCTTTTCTAACCAGGTAAATTTCAAGGCTGAAATTTTGTTAAATGGGG
455 CGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGG-TCAAA-TTT-TT---T--GG
* * * * *
40990942 TAGAGTTGTAACG-CCCTAAAATTTAAGTCTCTAATTTTGGCATGTTTTGAAACAAATTGCGTGT
512 TAGAGTTGTAATGACAC--AAA-TT-AG--TCT-ATTTTTGC-T-TTTAGACACAAA-TGC----
* *
40991006 TTGCTTTAATGGCTAAGTGATTTGGGTGTGTGGGG
563 -TG---T--T---T--GTGA--T--GTGTAT--GA
* *
40991041 GAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAATTG
1 GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATG
* *
40991106 AATCTGAACACTGGCATTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTAT
66 AATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTAT
* * *
40991171 TGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTATGGGACCGATCGCTTATAA
131 TGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGCTTATAA
* * * *
40991236 AATTGAGTTGCCTTTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTT
196 ACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTT
* * * * *
40991301 ATCGCTCTGATCCCACTCGCATAATTCTAGTTGAGGAGATTAAGGTTAGGCCAGATCTGACCTTC
261 ATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTTC
* * * * * * * *
40991366 TCAAGAGAAGCTAGTGTGGATTTTGGACCGTGAGGTTAAATTAGTGAGGAAGAAATCTATTTCAT
326 -GAGGAGAAGCCAGTGCGGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCCAT
* * * * * *
40991431 TAGTCAAAGTACTTTGGCATGATCACAGTTCAAAAGAAGCCACGTGGGAACCCGAAGCGGCGATG
390 TAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCAATG
* * * * ** ** *
40991496 CGAGAACAACAACCTCAGATTTTCTGACCAGGTAAATTTCAAGGCTGAAATTTTGTTAAATGGGG
455 CGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGG-TCAAA-TTT-TT---T--GG
* * * *
40991561 TAGATTTGTAAGGCCCCAAAATTTAAGTCTTTAATTTTTGCATGTTTAGACACAAACTGCTTGTT
512 TAGAGTTGTAATGACAC-AAA-TT-AGTC--T-ATTTTTGC-T-TTTAGACACAAA-TGC-TGTT
*
40991626 TGCTTTAATGGCTAAGTGATTTGGGTGTGTA
567 TG------T-G---A-TG---T--GTATG-A
* * * * * *
40991657 CGGGAGTGTTTGAGAAGCTTGGCTTCAAGTCTTAGCCTTTGG-AGATTTTTTTA-TTTTTCTCTT
1 ---GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCC-TTGGCACA-ATTTTTAGTTTTTCTCTT
40991720 AAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAG
61 AAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAG
* * * *
40991785 CCTATTGGTCCAGTGGCAGGTTCG-TTGGGCCTTACCGTGTACTGCAACGTATGGGACCGATCAC
126 CCTATTGGTCCAGTGGTAGGTT-GATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGC
* * * * *
40991849 TTATAAACTTGAGTTGCCTCTAAAATTAGACCAGATTCATGATGTATTTCACGTCCCCATGCTAA
190 TTATAAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAA
* * * * * *
40991914 GGTGTTATCGCTCTGATCCCACTCACATAGCACCAGTTGAAGAAATTAAGGTTAGGCAAGATCTG
255 GGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTG
* * ** * * *
40991979 ACCTTCGAGGAGACGCCAATGAAGATATTGGACCGTGAGTTTGAAGTTATTGAAGGAAGGAAAAT
320 ACCTTCGAGGAGAAGCCAGTGCGGATTTTGGACCGTGAG-GTGAAGTTACTG-AGGAA-G-AAAT
* * * * *
40992044 CTGTTTCCACTTACTCAAAAGTGGCTTTGGCGCTAATCACAGTACCAAAAGAAAGGCCACGCGGG
381 CT-ATTCCA-TTAGTC-AAAGT-GCTTTGGCG-TAATCACAGT-TCAGAAG-AA-GCCACGTGGG
* * *
40992109 AAACCCGAAGGAGGGCGATGCGGACAGCCAATACCCCTCATCTTTTTTTTGTGCCAGGTAAAATT
438 -AACCCGAA-GA-GGCAATGC-GACAG-CAATA-CCCTCATC--TTTTCTG-ACCAGGT-AAATT
* * * *
40992174 TCGAGGGTCGAAAATTTTGTTAAATGGGGGTAGGAGTTGTAACGCCCCCCAAAATTTAAGTTCTT
493 TTGA-GGTC--AAA-TTT-TT---T---GGTA-GAGTTGTAATG--ACAC-AAA-TT-AG----T
*
40992239 CTAATTTTTTGAATGTTTTAGACCACAAATTGCCTTGTTTACTTTAGTGGCTTAAGTGATTTGGG
537 CT-A-TTTTTG---CTTTTAGA-CACAAA------TG----C--T-GT---TT--GTGA------
* *
40992304 TGGTGTGTGGG
572 T-GTGTAT-GA
* * **
40992315 GAGTGTTTGAGGAAGCCTTGGGTTTCAAAGTCTTTGGCCTTTGGCATAATTTTTTTCTTTTTTCT
1 GAGTGTTTTA-GAAGCC-TGGG-TTC-AAGTC-TTGGCC-TTGGCACAA--TTTTTAGTTTTTCT
40992380 CCTTAAAATGAATCTCGGATCACCTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGAC
58 -CTT-AAATGAATCT-GGA-CA-CTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGA-
* * *
40992445 CACAAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTATGGG
117 CAC-AAAGAGCCTATTGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGG
* * * * * *
40992510 ACCGATCACTTATAAACTTGAGTTGCCTCTAAAATTAGACCAGATTCATGATGTATTTCACGTCC
181 ACCGATCGCTTATAAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCT
* * * * *
40992575 CCATGCTAAGGTGTTATCGCTCTGATCCCACTCACATAGCACCAGTTGAAGAAATTAAGGTTAGG
246 CCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGG
* * * ** * * * *
40992640 CAAGATCTGACCTTCGAGGAGACGCCAATGAAGATATTGGACCGTGAGTTTG-AGGTATTGAGGA
311 CCAGATCTGACCTTCGAGGAGAAGCCAGTGCGGATTTTGGACCGTGAG-GTGAAGTTACTGAGGA
* * * * * *
40992704 AGGAATCTGTTCCATTACTCAAAGTGCTTTGGCGTAATCACAGTACAAAAGAAGCCACGCGGGAA
375 AGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAA
* * * * * *
40992769 ACCGAAGAGCCGATGCGACAGCAATACCCTCATCTTTTTTGGCCAGGTAAATTTCGAGGTCAAAA
440 CCCGAAGAGGCAATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGGTC-AAA
* * * * *
40992834 TTTTGTTAAATGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAATTTTTGAATGTTTTGA
504 -TTT-TT---T--GGTAGAGTTGTAATGACAC-AAA-TT-AG--TCT-ATTTTTG-CT-TTTAGA
* *
40992899 CACAAATTGCTTGTTTACTTTAGTGGCTAAGTGATTTGGGTGTGTGTGG
554 CACAAA-TGC-TG-------T--T---T--GTGA------TGTGTATGA
* * **
40992948 GAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCATAATTTTTTTCTTTTTCTCTTAAAT
1 GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTTAGTTTTTCTCTTAAAT
* * **
40993013 GAATCTGGATACTAGCACTTAGGCCTTCCATATATTAATACTTGTTTTATGACACAAAGAGCCTA
65 GAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTA
** * * * * * * *
40993078 TTGGTCTTGTGGTAGGTTCATTGGGCCTTACCATCTATTGAAACGTGTGGGATCGATCG
130 TTGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCG
40993137 TGTTTTCGCT
Statistics
Matches: 14186, Mismatches: 1423, Indels: 1230
0.84 0.08 0.07
Matches are distributed among these distances:
567 101 0.01
568 328 0.02
569 27 0.00
570 3 0.00
571 2 0.00
578 2 0.00
579 3 0.00
580 1 0.00
581 2 0.00
582 2 0.00
583 4 0.00
584 6 0.00
585 3 0.00
586 3 0.00
587 241 0.02
588 43 0.00
589 89 0.01
590 113 0.01
591 5 0.00
592 3 0.00
593 7 0.00
594 1 0.00
595 1 0.00
596 204 0.01
597 275 0.02
598 3 0.00
599 5 0.00
600 3 0.00
601 8 0.00
602 4 0.00
603 3 0.00
604 6 0.00
605 9 0.00
606 3 0.00
607 8 0.00
608 7 0.00
609 7 0.00
610 9 0.00
611 12 0.00
612 10 0.00
613 17 0.00
614 25 0.00
615 338 0.02
616 1649 0.12
617 3246 0.23
618 3030 0.21
619 3245 0.23
620 125 0.01
621 51 0.00
622 23 0.00
623 12 0.00
624 18 0.00
625 10 0.00
626 24 0.00
627 23 0.00
628 16 0.00
629 8 0.00
630 14 0.00
631 14 0.00
632 13 0.00
633 22 0.00
634 9 0.00
635 18 0.00
636 5 0.00
637 7 0.00
638 11 0.00
639 12 0.00
640 14 0.00
641 2 0.00
642 28 0.00
643 6 0.00
644 20 0.00
645 6 0.00
646 29 0.00
647 4 0.00
648 12 0.00
649 13 0.00
650 15 0.00
651 7 0.00
652 8 0.00
653 5 0.00
654 5 0.00
655 17 0.00
656 9 0.00
657 11 0.00
658 17 0.00
659 8 0.00
660 19 0.00
661 15 0.00
662 18 0.00
663 13 0.00
664 9 0.00
665 17 0.00
666 8 0.00
667 4 0.00
668 46 0.00
669 10 0.00
670 240 0.02
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.33
Consensus pattern (580 bp):
GAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAATG
AATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCTAT
TGGTCCAGTGGTAGGTTGATTGGGCCTTAACGTGTACTGCAACGTGTGGGACCGATCGCTTATAA
ACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTT
ATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTTC
GAGGAGAAGCCAGTGCGGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCCATT
AGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCAATGC
GACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTTGAGGTCAAATTTTTTGGTAGAGTTGT
AATGACACAAATTAGTCTATTTTTGCTTTTAGACACAAATGCTGTTTGTGATGTGTATGA
Found at i:40978372 original size:618 final size:617
Alignment explanation
Indices: 40976820--40993136 Score: 21111
Period size: 619 Copynumber: 26.4 Consensus size: 617
40976810 TTGAGGTTCA
* *
40976820 AATTTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGACTAAGTGATTTGGGTGTGTAT
1 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
* * * *
40976885 GAGAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCTTTGGCACAATTTTTAGTTTTTCTCTTAAG
66 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAA
* *
40976950 TGAATCTGGACACTGGCTCTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGGCT
131 TGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
* * ** * * *
40977015 ATTGGTCCAGTGGTAGGTTGATTTGGCCTTAATGTGTACTGCAACATGTGAGACCGATCGCTTAG
196 ATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTAT
* * *
40977080 AAACTAGAGTTTCCTCTGAATTTAGACCAGATTCATGATGTGTTTGACGTCTCCATGCTAAGCCG
261 AAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCG
* * *
40977145 TTATCACTCTGACCCCACTCACATAGTACCAGTTGAGGAGATTGAGATTAGGCCAGATCTGACCT
326 TTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCT
* * * * *
40977210 TCGAAGA-AAGGCCAGTGCGGATTTTAGACTGTGAGGTGAAGTTACTGGGGAAGAAATCTATTCC
391 TCGAGGAGAA-GCCAGTGCAGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCC
** * *
40977274 ATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGTTACGTGGGAACCCGAAGACGCAA
455 ATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGA
* * * * * *
40977339 CGCGACAGTAATACCCTCATATTTTCTGACCAGGTAAATTTTGAGGCTAAAATTTTGTTCAAGGA
520 TGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTAAAGG-
* * *
40977404 GGTAGAGTTGTAACACCCCAAAACTTAAGTTTC-
584 GGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* * * *
40977437 AATTTTTGCATGTTTTGACGCAAATTGCTCGTTTGCTTTAATGGCTAAGTGATTTGGGTGTATGT
1 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
* * *
40977502 GAGAGTGTTTGAGAAGCCTGGGATCAAGTCTTGGCCTTGGCACAATTTTCAGTTTTTCTCTTAAA
66 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAA
* ** * * * * *
40977567 TGAATCTCGATGCTGGCACTAAGGTCTTTTATATATTAATAGTTGTTTTATGATACAGAGAGCCT
131 TGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
* * *
40977632 ATTGGTCCAGTGGTAGGCTCATTGGGCCTTACCGTGTACTGAAACGTGTGGGACCGATCACTTAT
196 ATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTAT
* * * * * * * *
40977697 AAAGTTGAGCTTCCACTAAAATTAGACCTGATTCATGATGTGTTTCATGTCTCCATGCTAAGACG
261 AAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCG
* *
40977762 TTATCGGTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCATATCTGACCT
326 TTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCT
* *
40977827 TCGAGGAAAAGCCAGTGCAGATTTTGGACCGTGAGGTGAAGTTACTGAGAAAGAAATCTATTCCA
391 TCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCCA
* *
40977892 TTAGTCAAAGTGCTTTGGCGTCATCACAGTTCAGAAGAAGCCACGTGGGAACACGAAGAGGCGAT
456 TTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGAT
* * * *
40977957 GCAACAGCAATACCCTCATCTTTTCTGACCAAGTAAATTTTGAGG-TCGAAAGTTTGTTAAAGTG
521 GCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCT-GAAATTTTGTTAAAG-G
*
40978021 GGTAGAGTTGTAACGCCCCAAAAATTAAGTCTCT
584 GGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* * * *
40978055 AATTTTTGCATGTTTAGACACAAATTGCTTGTTTGATTTAATGGCTAAGTGATTTGGATGTATAT
1 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
* ** *
40978120 GGGAGTGTTTGAGAAGCCTGGCTTCAAGTCTTGGCCTCAGCACAATTTTTAGTATTTCTCTTAAA
66 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAA
** *
40978185 TGAATCTAAACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGGCT
131 TGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
* * * * * *
40978250 ATTAGTCCAGAGGTAGGTTCATTGGGCCCTATCGTGTACTGCAAAGTGTGGGACCGATCACTTAT
196 ATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTAT
*
40978315 AAACTAGTGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCG
261 AAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCG
* * *
40978380 TTATTGCTCTGATCCCACTCACATAGTACTAGTTGAGGAGATTGAGGTTAGGCTAGATCTGACCT
326 TTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCT
* *
40978445 TCGAGGAGAAGCTAGTGC-GGTTGTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCC
391 TCGAGGAGAAGCCAGTGCAGATT-TTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCC
* * *
40978509 ATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCTACGTAGGAACACGAAGAGGCGA
455 ATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGA
* * * * *
40978574 TACGACAGCAATACCCTCATCTTTTCTGACCAAGTAAATTTTGAGG-TCAAAAGTTTGTTAAAGG
520 TGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCT-GAAATTTTGTTAAA-G
* *
40978638 GGGTAGAGTTGTAATGCCCCAAAATTTAAATCTCT
583 GGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* * * *
40978673 AATTTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGATGTATGT
1 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
* * *
40978738 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTGGGCACAAGTTTTAGTTTTTCTCTTAGA
66 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAA
*
40978803 TGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATA-TTTTTTTATGACACAAAGAGCCT
131 TGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
* * *
40978867 ATTGGTCCAGTGGTAGGTTGATTGGGCCTTACCGTGCACTGCAACGTGTGGGACCGACCGCTTAT
196 ATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTAT
* *
40978932 AAACTAGGGTTTCCTCTGAAATTAGACCAGTTTCATGATGTGTTTCACGTCTCCATGCTAAGGCG
261 AAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCG
* * * * *
40978997 TTATCTCTCTGATCCCACTCACATAGTATCAGTTGAGGAGATTGCGATTAGGCTAGATCTGACCT
326 TTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCT
* *
40979062 TCGAGGAGAAGCCAGTGCGGATGTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCCA
391 TCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCCA
* * *
40979127 TTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAACAAGCCATGTGGGAACCCGAAGAGGCAAT
456 TTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGAT
* * * * * * * *
40979192 GCGACATCAATACCCTTAT-TTTTTTTACCAGGTAAATTTTGAGGTTCAAATTTTGTTAAAGTGG
521 GCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTAAAGGGG
* * *
40979256 TAGAGTTGTAATGCCCAAAAATATAAGTCTCT
586 TAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* *
40979288 AATTTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGACTAAGTGATTTGGGTGTGTAT
1 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
* *
40979353 GAGAGTGTTTTAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAA
66 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAA
* *
40979418 TGAATCTGGACACTGGCCCTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGGCT
131 TGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
* *
40979483 ATTGGTCCAGTGGTAGGTTGATTTGGCCTTA--GTGGTA--G----GT-T------GA-----T-
196 ATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGT-GTACTGCAACGTGTGGGACCGATCGCTTA
* * * *
40979527 T----T-G-G---CCTTTGAAATTAGACCAGAGTCATGATTTGTTTCACGTCTCCATACTAAGGC
260 TAAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGC
* * *
40979583 GTTATCGCTCTTATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGACCTAACC
325 GTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACC
* * * *
40979648 TTCGAGGAGAAGCTAGTGC-GAATTTTGGACTGTGAGGTTACA-TTACTAAGGAAGAAATCTATT
390 TTCGAGGAGAAGCCAGTGCAG-ATTTTGGACCGTGAGGTGA-AGTTACTGAGGAAGAAATCTATT
* * *
40979711 CCATTAATAAAAGTGCTTTGGCATAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGC
453 CCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGC
** * * *
40979776 GATGCGGTAGCAATACCCTCATCTTTTTTGACTAGGTAAATTTCGACGCTGAAATTTTGTTAAAA
518 GATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTT-AAA
* *
40979841 GGGGTAGAGTTGTAACGCCCTAAAATTTAAGTGTCT
582 GGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* * * *
40979877 AATTTTTGCAT-TTTTGACACAAATTGCTTGTTTTTCTTTAGTGGCTAAGAGATTTTGGTGTGTA
1 AATTTTTGCATGTTTTGACACAAATTGCTTG-TTTGCTTTAATGGCTAAGTGATTTGGGTGTGTA
* * * *
40979941 TGTGAGTGTGTGAGAAGCCTGGGTTCAAGTCATGGCCTTGGC-CTAATTTTTTACTTTTTCTCTT
65 TGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCAC-AA-TTTTTAGTTTTTCTCTT
* * * * *
40980005 AAATGAATTTGGACAGTGGCACTTAGGCCTTTTATATGTGAATACTTGATTTATGACACAAAGAG
128 AAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAG
*
40980070 CCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCAATCG-T
193 CCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCT
* * ** * * *
40980134 ATATAACCTTGAGTTGACGCAT-AAATTAGACCAGATTAATGATGTGTTTCACGTGTCCATGCTA
258 -TATAAACTAGAGTTTCCTC-TGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTA
** * * *
40980198 AGTTGTTATCGCTCTGATCCCACTCACATGGTACCAGTTGAAGAGATTAAGGTTAGGCCAGATCT
321 AGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCT
* * ** * *
40980263 GACCTTCGAGGAGAAGCCAGTGCAGGTTTTGTACTATGAGGCGAAGTTATTG-GGAAAGAAATCT
386 GACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGAAGTTACTGAGG-AAGAAATCT
* * *
40980327 ATTCCATTACTCAAAGTGCTTTGGCATAATCACAGTTCAGAAGAAGCCACGTGGGACCCCGAAGA
450 ATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGA
* * *
40980392 GGCGATGCAACAGCAATACCCTCATCTTTTTTGACCAGATAAATTTCGAGGCTGAAATTTTGTTA
515 GGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTA
* *
40980457 AAGGGGGTAGAGTTGTAATGCCCCAAAATTT--GTCTCA
580 AA-GGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
** * * * * * *
40980494 AATTTTTGCATGTTTTGACTGAAATTGCTTATTTGCTTCAATGCCTAAGTGATTTAGGTGTCTGT
1 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
* * * *
40980559 GGGAGTGTTTGACAAACATGGGTTCAATTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAA
66 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAA
* * *
40980624 TGAATCTAGG-CACTGTCACTTAGGCCTTTTATATATTAATATTTGTTTTATGACACAGAGAGCC
131 TGAATCT-GGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
* * *
40980688 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTTTGGGACTGATCGCATA
195 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTA
* * * *
40980753 TAAACTTGAGTTGCCTCTGAAATTAGACTAGATTAATGATGTGTTTCACGTCTCCATGCTAAGGC
260 TAAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGC
* * * **
40980818 GTTATTGCTCTGATCCCACTCACATAGTACTAGTTGAAGAGATTGAGGTTATTCCAGATCTGACC
325 GTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACC
* * * **
40980883 TTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGAGGCGAAGTTATTGAAAAAGAAATCTATTCC
390 TTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCC
* * *
40980948 ATTAGTCAAAGTGCTTTGGCATAATCACAGTTCAGAAGAAACCACGTGGGAACCCGAAGAGGCAA
455 ATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGA
* *
40981013 TGCGACAGCAATACCTTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTCTTAAAGGG
520 TGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTAAAGGG
* *
40981078 GTAGAGTTGTAACGCCCTAAAATTTAAGTTTC-
585 GTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* * * *
40981110 AATTTTTTGCATGTTTTGACACAAATTGCTTGTTTGCATTAATGGCTAAGTGATTTAGGTGTCTG
1 AA-TTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTA
* *
40981175 TGGGAGTGTTTGACAAACCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAA
65 TGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAA
* *
40981240 ATGAATCTAGG-CACTGGCACTTAGGCCTTTTATATATTAATATTTGTTTTCTGACACAAAGAGC
130 ATGAATCT-GGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGC
* * * * *
40981304 CTATTGGTCCAGTGGTTGGTTCATTGAGCCTTACCGTGTACTACAACGTGTGGGACTGATCGCAT
194 CTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTT
* * * * * * *
40981369 ATAAACTTGAGTTGCCTCTGAAATTAAACTAGATTAATGATGTGTTTCAGGTCTCCATGCTTAGG
259 ATAAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGG
* * * **
40981434 CATTATCGCTCTGATCCCACTCACATAGTACCAGTTGAAGAGATTTAGGTTATTCCAGATCTGAC
324 CGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGAC
* * * *
40981499 CTTCGACGAGAAGCCAGTGCAGATTTTGTACCGTGAGGTGAAGTTATTGAGAAAGAAATCTATTC
389 CTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTC
* * *
40981564 CATTAGTCAAAGTGCTTTGGCATAATCACAGTTCAGAAGAAACCACGTGGGAACCCGAAGAGGCA
454 CATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCG
* * *
40981629 ATGCGACAACAATACCCTCATCTTTTCTGGCCAGG-AAATTTTGAGGCTGAAATTTTGTTAAAGG
519 ATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTAAAGG
* ** *
40981693 GGTAGAGTTGTAACGCCCTAAAATTCGAGTTTCT
584 GGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* * * **
40981727 AATTTTTGCATTTTTTGACACAAATTGCTTGTTTGCTTTAATCGCTAAGAGATTTTCGTGTGTAT
1 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
* * * * * *
40981792 GTGAGTGTTTGAGAAGCCTGGGTTCAAGCCATGGCCTTGCCCCGATTTTTTAGTTTTTCTCTTAA
66 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCAC-AATTTTTAGTTTTTCTCTTAA
* *
40981857 ATGAATCT-GACACTAGCACTTAGGCCTATTATATATTAATACTTGTTTTATGACACAAAGAGCC
130 ATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
* * * *
40981921 TATTGGTCCAGTGGCAGGTTCATTGGGCATTACCGTGTACTGAAACGTGTGGGCCCGATCGCTTA
195 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTA
* * * * *
40981986 TAAA-TAAGAGTTTCCTCTAAAATTAGACCA-AGGTCAAGATTTGTTTCACGTCTCTATGCTAAG
260 TAAACT-AGAGTTTCCTCTGAAATTAGACCAGA-TTCATGATGTGTTTCACGTCTCCATGCTAAG
* * * *
40982049 GCGTTATCGCTCTGATCCCACTCGCATAGTACCATTTGAAGAGATTGAGGTTAGGCCATATCTGA
323 GCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGA
* * * * * *
40982114 CCATCGAGGAGAAGCCAGTGTAGA-TTTAGACCGTGAGGTTACGTTACTGAGGAAGAAACCTATT
388 CCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATT
* * *
40982178 CCATTCGTCAAAGTGCTTTCGCATAATCACAG-TCTAGAAGAAGCCACGTGGGAACCCGAAGAGG
453 CCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTC-AGAAGAAGCCACGTGGGAACCCGAAGAGG
* * *
40982242 CGATGCGACAGCAATACCTTCATCTTTTCTTACCAGGTAAATTTCGAGGCT-AAAATTTGTTAAA
517 CGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTAAA
* * *
40982306 CGGGTTAGAGTTGTAACGCCCTAAAATTTAAGTTTCT
582 -GGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* * * * *
40982343 AACTTTTGCATTTTTTGACACAAATTGCTTGTTTGCTTTAATCGCTAAGAGATTTTGGTGTGTAT
1 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
* * * *
40982408 GTGAGTGTTTGAGAAGCCTAGGTTCAAGTCATGGCCTTGGCCCAATTTTTTAGTTTTTCTCTTAA
66 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTTAGTTTTTCTCTTAA
* *
40982473 ATGAATCTGGTCACTGGCACTTAGGCCTTTTATATATTAATACTTTTTTTATGACACAAAGAGCC
130 ATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
* *
40982538 TATTGGTCCAGTGGTAGGTTCATTGGGCATTACCGTGTACTGAAACGTGTGGGACCGATCGCTTA
195 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTA
* * ** * *
40982603 TAAACAAGAGTTTCCTCTAAAATTAGACCAGGGTCATGATTTGTTTCACGTCTCCATTCTAAGGC
260 TAAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGC
*
40982668 GTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTAACC
325 GTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACC
* * * * *
40982733 ATCGAGGAGAAGCCAGTGCAGCTTTTGGACCGTGAGGTTACGTTACTGAGGAAGAACTCTATTCC
390 TTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCC
* * * * * * * * *
40982798 ATTAGTCAAAGGGCTTTTGCATAATCACAGTCCAAAAAAAGCCACGTAGGAACCCGAACAGGCAA
455 ATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGA
* *
40982863 TGCGACAGCAATACCTTCATCTTTTCTGACCAGGTAAATTTTGAGGCTGAAATTTTGTTAAACGG
520 TGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTAAA-GG
* * *
40982928 GGTTGAGTTGTAACGCCCTAAAATTTAAGTTTCT
584 GGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* * ** * * * *
40982962 AAATTTTGCATTTTTTGACACAAATTGCTTGTTTGCTTTAATCACTAAGAGATTTTGTTCTGTAT
1 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
* * * * *
40983027 GTGAGTGTTTGAGAATCCTGGGTTCAAGTCATGGCCTTGGCCCATTTTTTAGTTTTTCTCTTAAA
66 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAA
* * *
40983092 TGAATCTGGACTCTGGCACTTAGTCCTTTTATATATTAATACTTGTTTTATGACACAAAAAGCCT
131 TGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
* *
40983157 ATTGGTCCA-TGGTAGGTTCATTGGGCATTACCGTGTACTGAAACGTGTGGGACCGATCGCTTAT
196 ATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTAT
* ** ** * *
40983221 AAACAAGAGTTTCCTCTGAAATTAGACCAGGGTCGCGATTTGTTTCACGTCTCCATTCTAAGGCG
261 AAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCG
* *
40983286 TTATCGCTCTGATCCCACTCACATAGTACCGGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCA
326 TTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCT
* * *
40983351 TCGAGGAGAAGCCAGTGCAGCTTTTGGACCGTGAGGTTACA-TTACTGAGGAAGAACTCTATTCC
391 TCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGA-AGTTACTGAGGAAGAAATCTATTCC
* * * * * * * * *
40983415 ATTAGTCAAAGTGCTTTTGTGTAATTACAGTCCAGAAAAAGCCACGTAGGAACTCGAACAGGCAA
455 ATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGA
* * *
40983480 TACGACAGCAATACCTTCATCTTTTCTGACCAGGTAAATTTTGAGGCTGAAATTTTGTTAAACGG
520 TGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTAAA-GG
* * *
40983545 GGTAGATTTGTAACGCCCTAAAATTTAAGTTTCT
584 GGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* * ** * * *
40983579 AACTTTTGCATTTTTTGACACAAATTGCTTGTTTGCTTTAATCACTAAGAGATTTTGGTCTGTAT
1 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
* * * *
40983644 GTGAGTGTTTGAGAATCCTGGGTTCAAGTCATGGCCTTGGCCCAATTTTTTAGTTTTTCTCTTAA
66 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTTAGTTTTTCTCTTAA
* *
40983709 ATGAATCTGGACTCTGGCACTTAGTCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
130 ATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
* *
40983774 TATTGGTCCA-TGGTAGGTTCATTGGGCATTACCGTGTACTGAAACGTGTGGGACCGATCGCTTA
195 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTA
* * ** * * * * *
40983838 TAAACAAGAGTTTCCTCTGAAATTAGACAAGGGTCGTGATTTGTTTCACTTCTCCATTCTAAGGT
260 TAAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGC
*
40983903 GTTATCGCTCTGATCCCACTCATATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACC
325 GTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACC
* * * *
40983968 ATCGAGGAGAAGCCAGTGCAGCTTTTGGACCGTGAGGTTACGTTACTGAGGAAGAAATCTATTCC
390 TTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCC
* * * *
40984033 ATTAGTCAAAGTGCTTTCGCGTAATCACAGTTCAGAAAAAGCCACGTGGGAACCCGAACAGGCAA
455 ATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGA
* *
40984098 TGCGACAGCAACACCTTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTAAACGG
520 TGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTAAA-GG
* * * **
40984163 GGTAGATTTATATCGCTTCAAAATTTAAGTCTCT
584 GGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* * * *
40984197 AATTTTTGCATGTTTAGGCACAAACTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTGT
1 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
* * * *
40984262 GGCAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGGACAATTTTTTGTTTTTCTCTAAAA
66 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAA
* ** * * *
40984327 TGGATCCAGACACTGGCACTTAGGCCTTTTATTTATTAATACTAGTTTTATGAGACAAAGAGCCT
131 TGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
* * *** * * *
40984392 ATTGGTCCAGTGGTAGGTTTAGTGGATGTTATCGTGTACCGCAACGTGTGGTACCGATCGCTTAT
196 ATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTAT
* * *
40984457 AAAATTA-AGTTACCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGACTCCATGCTAAGGC
261 -AAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGC
* * * * * *
40984521 GTTATCGCTCTGATCCCACTCACATAGTACTAGTTGAAGAAATTGAGGTTAGGCAAGATTTCACC
325 GTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACC
* * ** * ** * *
40984586 TTTGAGGAGATGCCAAAGAAGATTTCAGACCGTGAGTTTGAAG-TACTGAGGAAGGAATCTATTC
390 TTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAG-GTGAAGTTACTGAGGAAGAAATCTATTC
* * * * * * * *
40984650 CATTAGTCAAAGTGCTTTGGCGTAATCACAATACAAAAGAAGCCACGCGAGAAACCGAAGTGGTG
454 CATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCG
* * * *
40984715 AT-CTGACTA-CAATAACCTCATTTTTTCTGGCCAGGTAAATTTCAAGGCTGAAATTTTGTTAAA
519 ATGC-GAC-AGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTAAA
40984778 TGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
582 -GGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* * *
40984815 AATTTTGGCATGTTTTGAAACAAATTGCTTGTTTTCTTTAATGGCTAAGTGATTTGGGTGTGTAT
1 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
*
40984880 AGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTTAGTTTTTCTCTTAA
66 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTTAGTTTTTCTCTTAA
* *
40984945 ATAAATCTGGACACTCGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
130 ATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
* * * * * *
40985010 TACTGGTCTAGTGGTAGGTTCATTGGGCCTTACCGTGTAGTGCAACGTGTGGGACTGATAGCATA
195 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTA
* * * * * * *
40985075 TAAACTTGAGTTGCCTCTAAAATTAGACCAAATTAATGATGTGTTTCACATCTCCATGCTAAGGT
260 TAAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGC
* * **
40985140 GTTATCGCTCTGATGCCACTCACATAGTACCAGTTGATGAGATTGAGGTTATTCCAGATCTGACC
325 GTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACC
* * * * * * *
40985205 TTCGAGGAGAAGCTAGTGTAGGTTTTGTACCGTGAGGCGAAGTTATTGAGAAAGAAATCTATTCC
390 TTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCC
* * **
40985270 ATTAGTCAAAGTGCTTTGGCATAATCACAGTTCAGAAGAAACCACGTGGGAACCCGAAGAGGTAA
455 ATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGA
* *
40985335 TGCGACAACAATACCCTCATCTTTTCTGGCCAGG-AAATTTCGAGGCTGAAATTTTGTTAAAGGG
520 TGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTAAAGGG
* * *
40985399 GTAGAGTTGTAACGCCCTAAAATTTGAGTTTCT
585 GTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* * ** * **
40985432 AATTTTTGCATTTTTTGACACAAATTGCTTCTTTGCTTTAATCACTAAGAGATTTTCGTGTGTAT
1 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
* * * *
40985497 GTGAGTGTTTGAGAAGCCTGGGTTCAAGTCATGGCCTTGCCCCAATTTTTTAGTTTTTCTCTTAA
66 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTTAGTTTTTCTCTTAA
* * * *
40985562 ATGAATCT-AACACTAGCACTTAGGCCTATTATATATTAATACTTATTTTATGACACAAAGAGCC
130 ATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
* * * * * *
40985626 TATTGGTCCAGTGGCAGGTTCATTGGGCATTGCCGTGTACTGAAACATGTGGGACCGATCACTTA
195 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTA
* * ** * * *
40985691 TAAACAAGAGTTTCCTCTAAAATTAGACCAGGGTCATGATTTGTTTCACGTCTCTATGCTAAGGT
260 TAAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGC
* * * *
40985756 GTTATCGCTCTGATCCCACTCATATAGTACCAATTGAAGAGATTGAGGTTAGGCCACATCTGACC
325 GTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACC
** * * * * *
40985821 AACGAGGAGAGGCCAGTACAGATTTTAGACCGTGAGGTTACGTTACTGAGGAAGAAATCTATTCC
390 TTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCC
* *
40985886 ATTCGTCAAAGTGCTTTCGCGTAATCACAGCTT-AGAAGAAGCCACGTGGGAACCCGAAGAGGCG
455 ATTAGTCAAAGTGCTTTGGCGTAATCACAG-TTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCG
* ** *
40985950 ATGCGACAGCAATACCTTCATCTTTTCTGATAAGGTAAATTTCGAGGCTAAAATTTTGTTAAACG
519 ATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTAAA-G
* * *
40986015 GGTTAGAGTTGTAACGCCCTAAAATTTAAGTTTCT
583 GGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* * * * * *
40986050 AACTTTTGCAT-TCTTTGACACAAATTCCTTGTTTGCTTTAATCGCTAAGAGATTTTGGTGTGTG
1 AATTTTTGCATGT-TTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTA
* * *
40986114 TGTGAGTGTTTGAGAAGCCTGGGTTCAAGTCATGGCCTTGGCCCAATTTTTTAGTTTTTCTCTTA
65 TGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTTAGTTTTTCTCTTA
* * * * *
40986179 AATGAATCTGGACACTGGCACATAGTCCTTTTATAAATTAACACTTTTTTTATGACACAAAGAGC
129 AATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGC
* * * * *
40986244 CTATTGGTCCAGTGGTAGGTTCATTGGGCATTACCGTGTATTGAAATGTGTGGGATCGATCGCTT
194 CTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTT
* ** * *
40986309 ATAAACAAGAGTTTCCTCTGAAATTAGACCAGGGTCATGATTTGTTTCACGTCTCCATTCTAAGG
259 ATAAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGG
* *
40986374 CGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGTTTGAGGTTAGGCCACATCTGAC
324 CGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGAC
* * * *
40986439 CATCGAGGAGAAGCCAGCGCAGCTTTTGGACCGTGAGGTTG-CGTTACTGAGGAAGAAATCTATT
389 CTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGG-TGAAGTTACTGAGGAAGAAATCTATT
* *
40986503 CCATTAGTCAAAGTGCTTTCGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAACAGGC
453 CCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGC
* * * *
40986568 GATGCGACAGCAATACCTTCATCTTTTCTGACCAGGTAAATTTTGAGGCTAAAATTTTGCTAAAC
518 GATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTAAA-
* * *
40986633 GGGGTAGAGTTGTAACGCCCTAAACTTTAAGTTTCT
582 GGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* * * ** * *
40986669 AACTTTTGCATTTTTTGACACTAATTGCTTGTTTGCTTTAATCACTAAGAGATTTTGGTGTGTAT
1 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
* * * * * *
40986734 GTGAGTGTTTGAGAATCTTGGGTTCAAGTCATGGCCTTGGCCCAATTTTTTAATTTTTCTCTTAA
66 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTTAGTTTTTCTCTTAA
* * *
40986799 ATAAATCTGGACTCTGGCACTTAGTCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
130 ATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
* *
40986864 TATTGGTCCAGTGGTAGGTTCATTGGGCATTACCGTGTACTGAAACGTGTGGGACCGATCGCTTA
195 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTA
* * ** * * * *
40986929 TAAACAAGAGTTTCCTCTGAAATTAAACCAGGGTCGTGATTTGTTTCACGTCTCCATTCTAACGC
260 TAAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGC
* *
40986994 GTTATCGCTCTGATCCCACTCAGATAGTACCAGTTGAGGAGTTTGAGGTTAGGCCAGATCTGACC
325 GTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACC
* * * * *
40987059 ATCGAGGAGAAGCCAGTGCA-ACTTTTGGACCGTGAAGTTACGTTACTAAGGAAGAAATCTATTC
390 TTCGAGGAGAAGCCAGTGCAGA-TTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTC
* * * *
40987123 CATTAGTCAATGTGCTTTCGCGTAATCACAGTTCAAAAGAAGGCACGTGGGAACCCGAAGAGGCG
454 CATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCG
* * * * ** * * * * *
40987188 ATGCGACAGTAATACCTTAATATTTTCAAATCTGGTAAATTTCGGGGCTAAAATTTTCTTAAAGT
519 ATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTAAAG-
* * * ***
40987253 GGGTAGATTTATATCGCTTAAAAATTTAAGTCTCT
583 GGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* * * *
40987288 AATTTTTGCATGTTTAGGCACAAACTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTGT
1 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
* * *
40987353 GGCAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGGACAATTTTTTGTTTTTCTCTTAAA
66 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAA
* * * *
40987418 TGGATCT-GACACTGGCATTTAGGCCTTTTATATATTAATACTAGTTTTATGAGACAAAGAGCCT
131 TGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
* * * *
40987482 ATTGGTCCAGTGGTAGGTTTATTGGACGTTACCGTGTACCGCAACGTGTGGGACCGATCGCTTAT
196 ATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTAT
* * * *
40987547 AAACTTGAGTTACCTCTGAAATTAGACCAGAGTCATGATGTGTTTCACGTGTCCATGCTAAGGCG
261 AAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCG
* * * * * *
40987612 TTATCGCTCTGATCCCACTCACATAGTACTAGTTGAAGAAATTGAGGTTAGGCAAGATTTCACCT
326 TTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCT
* * ** * ** * *
40987677 TTGAGGAGATGCCAAAGAAGATTTCAGACCGTGAGTTTGAAG-TACTGAGGAAGGAATCTATTCC
391 TCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAG-GTGAAGTTACTGAGGAAGAAATCTATTCC
* * * * * *
40987741 ATTAGTCAAAGTGCTTTGGTGTAATCACAGTACAAAAGAAGCCACGCGGGAAACCGAAGTGGCGA
455 ATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGA
* * * * * *
40987806 TGTGACTA-CAATACCCTCATTTTTTTTGGCCAGGTACATTTCGAGG-TCAAAATTTTGTTAAAT
520 TGCGAC-AGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCT-GAAATTTTGTTAAA-
* * *
40987869 GGGGTAGAGTTATAACGCGCCAAAATTTAAGTCTTT
582 GGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* *
40987905 AATTTTTGAATGTTTTGACACAAATTGCTTGTTTTCTTTAATGGCTAAGTGATTTGGGTGTGTAT
1 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
* *
40987970 AGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTTGTTTTTCTCTTAAA
66 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAA
* * * * *
40988035 TGGATCTGGACACTGGCATTTAGGCCTTTTATATATTAATACTAGTTTTATGAGATAAAGAGCCT
131 TGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
* * * *
40988100 ATTGGTCCAGTGGTAGGTTTATTGGACGTTACCGTGTACCGCAACGTGTGGGACCGATCGCTTAT
196 ATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTAT
* *
40988165 AAACTTGAGTTACCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCG
261 AAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCG
* * * * * *
40988230 TTATCGCTCTGATCCCACTCACATAGTACTAGTTGAAGAAATTGAGGTTAGGCAAGATTTCACCT
326 TTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCT
* * * ** * ** * *
40988295 TTGAAGAGATGCCAAAGAAGATTTCAGACCGTGAGTTTGAAG-TACTGAGGAAGGAATCTATTCC
391 TCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAG-GTGAAGTTACTGAGGAAGAAATCTATTCC
* * ** * *
40988359 ATTAGTCAAAGTGCTTTGGCGTAATCACAGTACAAAAGAAGCCACGCAGGAAACCGAAGTGGCGA
455 ATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGA
* * * *
40988424 TGTGACTA-CAATACCCTCATTTTTTCTGGCCAGGTAAATTTCGAGG-TCAAAATTTTGTTAAAT
520 TGCGAC-AGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCT-GAAATTTTGTTAAA-
* * *
40988487 GGGGTAGAGTTATAACGCACCAAAATTTAAGTCTTT
582 GGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* *
40988523 AATTTTTGAATGTTTTGACACAAATTGCTTGTTTTCTTTAATGGCTAAGTGATTTGGGTGTGTAT
1 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
*
40988588 AGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTTAGTTTTTCTCTTAA
66 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTTAGTTTTTCTCTTAA
* * *
40988653 ATGAATCTGGACATTGGAACTTAGGCCTTTTATATATTAATACTTTTTTTATGACACAAAGAGCC
130 ATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
40988718 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTA
195 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTA
* *
40988783 TAAACTTA-AGTTGCCTCTAAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGG
260 TAAAC-TAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGG
* *
40988847 CGTTATTGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGTTTGAGGTTAGGCCAGATCTGA-
324 CGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGAC
* * * * * * * *
40988911 CTATCTAGGAGAAGCCAGTACAGCTTTGGGACCGTGAAGTTACGTTACTGAGAAAGAAATCTATT
389 CT-TCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATT
* * ** *
40988976 CCATTAGTCAAAGTGCTTTCGCGTAATCACAGTTCAGACGAAGCCACACGGGAACCCGAATAGGC
453 CCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGC
* * * **
40989041 AATGCGACAGCAATACCTTAATCTTTTCAAACCAGGTAAATTTCGAGGCTGAAATTTTGTTAAAG
518 GATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTAAA-
* * * ** *
40989106 GGGGTAGATTTATATCGCTTCAAAATTTAAGTCCCT
582 GGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* * * * *
40989142 AATTTTTGCATGTTTAGGCACAAACTGCTTGTTTGCTTTATTGGCTAAGTG-TTTGGGTGTGTGT
1 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
** * * * *
40989206 GACATTGTTTGAGAAGCCTGGGCTCAAGTCTTGTCCTTGGGACAATTTTTTA-TTTTTCTCTTAA
66 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTTAGTTTTTCTCTTAA
* * * *
40989270 ATGGATCTGGACACTGGCACTTAGGCCTTTTATATATTCATACTAGTTTTATGAGACAAAGAGCC
130 ATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
* * * *
40989335 TATTGGTCTAGTGGTAGGTTTATTGGGCGTTACCGTGTACCGCAACGTGTGGGACCGATCGCTTA
195 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTA
* * * * *
40989400 TAAACTTGAGTTGCCTTTAAAATTAGACCAAATTCATGATGTGTTTCACGTCTCCATGCTAAGGC
260 TAAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGC
* * * * * *
40989465 GTTATCGCTCTGATCCCACTCACATAGTA-CTGTTGAAGAAATTGAGGTTAGGCAAGATTTCACC
325 GTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACC
* * ** * * * * * *
40989529 TTTGAGGAGATGCCAAAGAAGATTTCGGACCGTGAGTTTAAAG-TACTGGGGAAGGAATCTATTC
390 TTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAG-GTGAAGTTACTGAGGAAGAAATCTATTC
* * * * * *
40989593 CATTAGTCAAAGTGCTTTCGCGTAATCACAGTACAAAAGAAGCCACGCGGGAAACCGAAGGGGCG
454 CATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCG
* ** * *
40989658 ATGTGACTA-CAATACTGTCATCTTTTCTGGCCAGGTAAATTTCGAGG-TCAAAATTTTGTTAAA
519 ATGCGAC-AGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCT-GAAATTTTGTTAAA
* *
40989721 TGGGGTAGAGTTGTAACGCACCAAAATTTAAGTCTTT
582 -GGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
** *
40989758 AATTTTTTAATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCAAAGTGATTTGGGTGTGTAT
1 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
* * *
40989823 AGTAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTTTGTTTTTCTCTTAA
66 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTTAGTTTTTCTCTTAA
*
40989888 ATGAATCTGGACACTGGAACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
130 ATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
* ** *
40989953 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGAGTACTAAAACGTGTGGGACCGATTGCTTA
195 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTA
* * *
40990018 TAAACTAGAGTTTCCTCTAAAATTAGACTAGAGTCATGA----TTT---GT-T---T-C--A--C
260 TAAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGC
* * ** *
40990067 ---A---CTCAGATCCCACTCACATAGTACCAGTTGAAGAGATTGAGGTTATTCTAGATCTGACC
325 GTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACC
* * * *
40990126 TTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGAGGTGAAGTTATTAAGAAAGAAATCTATTCC
390 TTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCC
* * * *
40990191 ATTAGTCAAAGTGCTTTGCCATAATCATAGTTCAAAAGAAGCCACGTGGGAACCCGAAGAGGCGA
455 ATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGA
* * * * *
40990256 TACGACAGTAATACCCTCATCTTTTTTGACCAGGTAAATTTCGAGGCAGAAATTTTGTTAAGTGG
520 TGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTAA-AGG
* * * * *
40990321 GGAAGATTTGTAACGCCTCAAAAGTTAAGTCTAT
584 GGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* **
40990355 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGTTAAGTGATTTGGGTGTGTGG
1 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
*
40990420 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAT
66 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAA
* *
40990485 TGAATCTGAACACTGGCATTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
131 TGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
* *
40990550 ATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGAGTACTGCAACGTGTGGGACCGATCACTTAT
196 ATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTAT
* * * * *
40990615 AAAATTGAGTTGCCTTTGAAATTAGACCAGATTCATGTTGTGTTTCACGTCTCCATGCTAAGGCG
261 AAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCG
* *
40990680 TTATCGCTCTGATCCCACTCACATAGTACTAGTTGAGGATATTGAGGTTAGGCCAGATCTGACCT
326 TTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCT
* *
40990745 TCGAGGAGAAGCCAGTGC-GAATTTTGCACCGTGAGGTTAAGTTACTGAGGAAGAAATCTATTCC
391 TCGAGGAGAAGCCAGTGCAG-ATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCC
* * *
40990809 ATTAGTCAAAGGTGCTTTGGCGTAATCACAATTCAAAAGAAGCCACGTGGGAACCTGAAGAGGCG
455 ATTAGTCAAA-GTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCG
* * *
40990874 ATGCGACAGCAATACCCTCGTCTTTTCTAACCAGGTAAATTTCAAGGCTGAAATTTTGTTAAATG
519 ATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTAAA-G
*
40990939 GGGTAGAGTTGTAACGCCCTAAAATTTAAGTCTCT
583 GGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* * * **
40990974 AATTTTGGCATGTTTTGAAACAAATTGCGTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTGG
1 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
*
40991039 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAT
66 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAA
* *
40991104 TGAATCTGAACACTGGCATTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
131 TGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
*
40991169 ATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTATGGGACCGATCGCTTAT
196 ATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTAT
* * * *
40991234 AAAATTGAGTTGCCTTTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCG
261 AAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCG
* * * * *
40991299 TTATCGCTCTGATCCCACTCGCATAATTCTAGTTGAGGAGATTAAGGTTAGGCCAGATCTGACCT
326 TTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCT
* * * ** * * * *
40991364 TCTCAAGAGAAGCTAGTGTGGATTTTGGACCGTGAGGTTAAATTAGTGAGGAAGAAATCTATTTC
391 TC-GAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCC
* * * * *
40991429 ATTAGTCAAAGTACTTTGGCATGATCACAGTTCAAAAGAAGCCACGTGGGAACCCGAAGCGGCGA
455 ATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGA
* * * * ** *
40991494 TGCGAGAACAACAACCTCAGATTTTCTGACCAGGTAAATTTCAAGGCTGAAATTTTGTTAAATGG
520 TGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTAAA-GG
* * *
40991559 GGTAGATTTGTAAGGCCCCAAAATTTAAGTCTTT
584 GGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* * *
40991593 AATTTTTGCATGTTTAGACACAAACTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAC
1 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
* * * * *
40991658 GGGAGTGTTTGAGAAGCTTGGCTTCAAGTCTTAGCCTTTGG-AGATTTTTTTA-TTTTTCTCTTA
66 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCC-TTGGCACA-ATTTTTAGTTTTTCTCTTA
40991721 AATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGC
129 AATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGC
* * * *
40991786 CTATTGGTCCAGTGGCAGGTTCGTTGGGCCTTACCGTGTACTGCAACGTATGGGACCGATCACTT
194 CTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTT
* * * * *
40991851 ATAAACTTGAGTTGCCTCTAAAATTAGACCAGATTCATGATGTATTTCACGTCCCCATGCTAAGG
259 ATAAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGG
* * * * * *
40991916 TGTTATCGCTCTGATCCCACTCACATAGCACCAGTTGAAGAAATTAAGGTTAGGCAAGATCTGAC
324 CGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGAC
* * * * * *
40991981 CTTCGAGGAGACGCCAATGAAGATATTGGACCGTGAGTTTGAAGTTATTGAAGGAAGGAAAATCT
389 CTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAG-GTGAAGTTACTG-AGGAA-G-AAATCT
* * * * *
40992046 GTTTCCACTTACTCAAAAGTGGCTTTGGCGCTAATCACAGTACCAAAAGAAAGGCCACGCGGGAA
450 -ATTCCA-TTAGTC-AAAGT-GCTTTGGCG-TAATCACAGT-TCAGAAG-AA-GCCACGTGGG-A
* *
40992111 ACCCGAAGGAGGGCGATGCGGACAGCCAATACCCCTCATCTTTTTTTTGTGCCAGGTAAAATTTC
506 ACCCGAA-GA-GGCGATGC-GACAG-CAATA-CCCTCATC--TTTTCTG-ACCAGGT-AAATTTC
*
40992176 GAGGGTCGAAAATTTTGTTAAATGGGGGTAGGAGTTGTAACGCCCCCCAAAATTTAAGTTCTTCT
562 GAGGCT-G-AAATTTTGTTAAA--GGGGTA-GAGTTGTAACG--CCCCAAAATTTAAG-TC-TCT
* * *
40992241 AATTTTTTGAATGTTTTAGACCACAAATTGCCTTGTTTACTTTAGTGGCTTAAGTGATTTGGGTG
1 AA-TTTTTGCATGTTTT-GA-CACAAATTG-CTTGTTTGCTTTAATGGC-TAAGTGATTTGGGT-
* *
40992306 GTGTGTGGGGAGTGTTTGAGGAAGCCTTGGGTTTCAAAGTCTTTGGCCTTTGGCATAATTTTTTT
60 GTGTAT-GGGAGTGTTTGA-GAAGCC-TGGG-TTC-AAGTC-TTGGCC-TTGGCACAA--TTTTT
**
40992371 CTTTTTTCTCCTTAAAATGAATCTCGGATCACCTGGCACTTAGGCCTTTTATATATTAATACTTG
116 AGTTTTTCT-CTT-AAATGAATCT-GGA-CA-CTGGCACTTAGGCCTTTTATATATTAATACTTG
40992436 TTTTATGACCACAAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCA
176 TTTTATGA-CAC-AAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCA
* * * * * *
40992501 ACGTATGGGACCGATCACTTATAAACTTGAGTTGCCTCTAAAATTAGACCAGATTCATGATGTAT
239 ACGTGTGGGACCGATCGCTTATAAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGT
* * * * *
40992566 TTCACGTCCCCATGCTAAGGTGTTATCGCTCTGATCCCACTCACATAGCACCAGTTGAAGAAATT
304 TTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATT
* * * * * * * *
40992631 AAGGTTAGGCAAGATCTGACCTTCGAGGAGACGCCAATGAAGATATTGGACCGTGAGTTTG-AGG
369 GAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAG-GTGAAGT
* * * * * *
40992695 TATTGAGGAAGGAATCTGTTCCATTACTCAAAGTGCTTTGGCGTAATCACAGTACAAAAGAAGCC
433 TACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCC
* * * * *
40992760 ACGCGGGAAACCGAAGAGCCGATGCGACAGCAATACCCTCATCTTTTTTGGCCAGGTAAATTTCG
498 ACGTGGGAACCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCG
*
40992825 AGG-TCAAAATTTTGTTAAATGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
563 AGGCT-GAAATTTTGTTAAA-GGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
* * * *
40992881 AATTTTTGAATGTTTTGACACAAATTGCTTGTTTACTTTAGTGGCTAAGTGATTTGGGTGTGTGT
1 AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
* **
40992946 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCATAATTTTTTTCTTTTTCTCTTAA
66 GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTTAGTTTTTCTCTTAA
* * **
40993011 ATGAATCTGGATACTAGCACTTAGGCCTTCCATATATTAATACTTGTTTTATGACACAAAGAGCC
130 ATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
** * * * * *
40993076 TATTGGTCTTGTGGTAGGTTCATTGGGCCTTACCATCTATTGAAACGTGTGGGATCGATCG
195 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCG
40993137 TGTTTTCGCT
Statistics
Matches: 14069, Mismatches: 1425, Indels: 410
0.88 0.09 0.03
Matches are distributed among these distances:
586 1 0.00
587 235 0.02
588 52 0.00
589 113 0.01
590 107 0.01
591 4 0.00
592 3 0.00
593 1 0.00
596 198 0.01
597 315 0.02
598 1 0.00
599 1 0.00
600 3 0.00
602 3 0.00
603 2 0.00
604 3 0.00
606 1 0.00
607 2 0.00
608 2 0.00
609 3 0.00
610 3 0.00
611 2 0.00
612 1 0.00
613 1 0.00
614 8 0.00
615 364 0.03
616 1675 0.12
617 3348 0.24
618 3163 0.22
619 3441 0.24
620 87 0.01
621 40 0.00
622 7 0.00
623 7 0.00
624 15 0.00
625 8 0.00
626 20 0.00
627 18 0.00
628 12 0.00
629 7 0.00
630 12 0.00
631 12 0.00
632 7 0.00
633 20 0.00
634 9 0.00
635 18 0.00
636 23 0.00
637 9 0.00
638 8 0.00
639 20 0.00
640 16 0.00
641 3 0.00
642 27 0.00
643 6 0.00
644 20 0.00
645 6 0.00
646 27 0.00
647 4 0.00
648 15 0.00
649 19 0.00
650 9 0.00
651 8 0.00
652 24 0.00
653 19 0.00
654 9 0.00
655 19 0.00
656 7 0.00
657 10 0.00
658 13 0.00
659 7 0.00
660 16 0.00
661 12 0.00
662 14 0.00
663 12 0.00
664 9 0.00
665 15 0.00
666 8 0.00
667 3 0.00
668 46 0.00
669 10 0.00
670 241 0.02
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.33
Consensus pattern (617 bp):
AATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTAT
GGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAAA
TGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCCT
ATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTAT
AAACTAGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCG
TTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCT
TCGAGGAGAAGCCAGTGCAGATTTTGGACCGTGAGGTGAAGTTACTGAGGAAGAAATCTATTCCA
TTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGAT
GCGACAGCAATACCCTCATCTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTAAAGGGG
TAGAGTTGTAACGCCCCAAAATTTAAGTCTCT
Found at i:40979516 original size:22 final size:22
Alignment explanation
Indices: 40979491--40979534 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
40979481 CTATTGGTCC
40979491 AGTGGTAGGTTGATTTGGCCTT
1 AGTGGTAGGTTGATTTGGCCTT
40979513 AGTGGTAGGTTGATTTGGCCTT
1 AGTGGTAGGTTGATTTGGCCTT
40979535 TGAAATTAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.14, C:0.09, G:0.36, T:0.41
Consensus pattern (22 bp):
AGTGGTAGGTTGATTTGGCCTT
Found at i:40997745 original size:616 final size:617
Alignment explanation
Indices: 40996422--40997757 Score: 1984
Period size: 616 Copynumber: 2.2 Consensus size: 617
40996412 TTGACACAAA
* * *
40996422 TTGTAACGCCCTAAAATTTAAGGT-TCAAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCT
1 TTGTAACGCCCTAAAATTTAA-GTCTCTAATTTTGGCATGTTTTGAAACAAATTGCTTGTTTGCT
* * * *
40996486 TTATTGGCTAAGAGATTTTGGTGTGTGTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCATGGCCT
65 TTAATGGCTAAGTGA-TTTGGTGTGTGTGGGAGTGTTTCAGAAGCCTAGGTTCAAGTCATGGCCT
40996551 TGGCACAATTTTTTAGTTTTTCTCTTAAATGAATCTAGACACTGGCACTTAGGCCTTTTATATAG
129 TGGCACAATTTTTTAGTTTTTCTCTTAAATGAATCTAGACACTGGCACTTAGGCCTTTTATATAG
*
40996616 CCATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTG
194 CAATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTG
* * * * * *
40996681 TACTGCAATGTGTGGGACCAATCGCTTATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCAT
259 TACTGCAACGTGTCGGACCAATCGCTCATAAACTAGAGTTGCCTCTAAAATTAGACCAGACTCAT
* * * * *
40996746 TATGTGTTTATCGTCTCCATGCTAAGGCGTTAACGCTCTGATCCCACTCACATAGTACTAGTTGA
324 GATGTGTTTATCGTCTCCATGCTAAGGCATTAACACTCTCATCCCACTCACATAGTACCAGTTGA
* * * **
40996811 GGAGATTGAGGTTAGGCCAGATCTGACCTTCGAGTAGAAGCCAGTGCGGATTTTGGACCGTGAGG
389 GGAGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCGAATTTTGCACCGCAAGG
** *
40996876 TTAAGTTACTGAGGAAGAAAACTATTCCATTAGTCAAAGTGTTTTGGCGTAATCACAGTGCAGAA
454 TTAAGTTACTGAGGAAGAAAACTATTCCATTAGTCAAAGTGCCTTGGCATAATCACAGTGCAGAA
* * * * * * *
40996941 GAAGCCACGTGGGAACCCGAAGAGGCGATGCGACATAATACCCTCGTCTTTTCTGACCAGGTAAA
519 GAAGCCACGTAGGAACCCGAAGAGGCGAGGCGACACAATACCCTCATATTTTCCGACCAAGTAAA
*
40997006 TTTCAAGGCTGAAATTTTATTAATTGGGGTAGAG
584 TTTCAAGGCTGAAATTTTATTAATAGGGGTAGAG
*
40997040 TTGTAACGCCCTAAAATTTAAGACTCTAATTTTGGCATGTTTTGAAACAAATTGCTTGTTTGCTT
1 TTGTAACGCCCTAAAATTTAAGTCTCTAATTTTGGCATGTTTTGAAACAAATTGCTTGTTTGCTT
* * *
40997105 TAATGGCCAAGTGATTCGGGTGTGTGTGGGAGTGTTTCAGAAGCCTAGGTTCAAGTCTTGGCCTT
66 TAATGGCTAAGTGATT-TGGTGTGTGTGGGAGTGTTTCAGAAGCCTAGGTTCAAGTCATGGCCTT
* * * * **
40997170 GGCGCAA-TTTTTATTTTTTCTCTTAAATGAATCTGGACACTGTCACTTA-GCCTTTTATATATT
130 GGCACAATTTTTTAGTTTTTCTCTTAAATGAATCTAGACACTGGCACTTAGGCCTTTTATATAGC
* * *
40997233 AATACTTGTTTTATGACGCAAAGAGCCTATTGGTCTAGTGGTAGGTTCATTGGGCGTTACCGTGT
195 AATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGT
* * * *
40997298 ATTGCAACGTGTCGGACCGATCGCTCATAAACTAGAGTTTCCTCTAAAATTAGACTAGAGCT-AT
260 ACTGCAACGTGTCGGACCAATCGCTCATAAACTAGAGTTGCCTCTAAAATTAGACCAGA-CTCAT
* *
40997362 GATTTGTTTCA-CGTCTCCATGCTAAGGCATTATCACTCTCATCCCACTCACATAGTACCAGTTG
324 GATGTGTTT-ATCGTCTCCATGCTAAGGCATTAACACTCTCATCCCACTCACATAGTACCAGTTG
*
40997426 AGGAGATTGAGGTTCGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCGAATTTTGCACCGCAAG
388 AGGAGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCGAATTTTGCACCGCAAG
* * *
40997491 GTTAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGCCTTGGCATAATCATAGTTCAGA
453 GTTAAGTTACTGAGGAAGAAAACTATTCCATTAGTCAAAGTGCCTTGGCATAATCACAGTGCAGA
* * *
40997556 AGAAGCCACGTAGGAACCTGATGAGGCTAGGCGACAGCAATACCCTCATATTTTCCGACCAAGTA
518 AGAAGCCACGTAGGAACCCGAAGAGGCGAGGCGACA-CAATACCCTCATATTTTCCGACCAAGTA
*
40997621 AATTT-AGAGGCTGAAATTTTGTTAA-AGAGGGTAGAG
582 AATTTCA-AGGCTGAAATTTTATTAATAG-GGGTAGAG
40997657 TTGTAACGCCCTAAAATTTAAGTCTCTAATTTTGGCATGTTTTGAAACAAATTGCTTGTTTGCTT
1 TTGTAACGCCCTAAAATTTAAGTCTCTAATTTTGGCATGTTTTGAAACAAATTGCTTGTTTGCTT
*
40997722 TAATGGCTAAGTGATTTGGTGTGTGTGAGAGTGTTT
66 TAATGGCTAAGTGATTTGGTGTGTGTGGGAGTGTTT
40997758 GANNNNNNNN
Statistics
Matches: 645, Mismatches: 66, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
616 349 0.54
617 176 0.27
618 120 0.19
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (617 bp):
TTGTAACGCCCTAAAATTTAAGTCTCTAATTTTGGCATGTTTTGAAACAAATTGCTTGTTTGCTT
TAATGGCTAAGTGATTTGGTGTGTGTGGGAGTGTTTCAGAAGCCTAGGTTCAAGTCATGGCCTTG
GCACAATTTTTTAGTTTTTCTCTTAAATGAATCTAGACACTGGCACTTAGGCCTTTTATATAGCA
ATACTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTA
CTGCAACGTGTCGGACCAATCGCTCATAAACTAGAGTTGCCTCTAAAATTAGACCAGACTCATGA
TGTGTTTATCGTCTCCATGCTAAGGCATTAACACTCTCATCCCACTCACATAGTACCAGTTGAGG
AGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAGTGCGAATTTTGCACCGCAAGGTT
AAGTTACTGAGGAAGAAAACTATTCCATTAGTCAAAGTGCCTTGGCATAATCACAGTGCAGAAGA
AGCCACGTAGGAACCCGAAGAGGCGAGGCGACACAATACCCTCATATTTTCCGACCAAGTAAATT
TCAAGGCTGAAATTTTATTAATAGGGGTAGAG
Found at i:41000072 original size:618 final size:618
Alignment explanation
Indices: 40998869--41002342 Score: 3776
Period size: 619 Copynumber: 5.5 Consensus size: 618
40998859 NNNNNNTTGT
* * * *
40998869 CTCTAAAATTAAACCAGATTCATGATGTGTTTCACGTCTCCATGCTAA-AGTGTTATCACTCTGA
1 CTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGA-CGTTATCGCTCTGA
* * * * * *
40998933 TCCCATTCACACAGTACCAATTGAAGAGATTAAGGTTAGGCCAGGTCTGACCTTCGAGGAGAAGT
65 TCCCACTCACATAGTACCAGTTGAAGAGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGC
* * * *
40998998 CAGTGATGA-TTTGTACTGT-ACGGTGAAGTTATTGAGAAAGAAATCTATTCCAGTAGTCAAATT
130 CAGTGATGATTTTGTACCGTGA-GGTGAAGTTACTGAGAAAGAAATCTATTCCATTAGTCAAAGT
*
40999061 GCTTTGGCGTAATCACAGTTCAGAAGAAGCAACGTGGGAACCCGAAGAGGCGATGCGACAGCAAT
194 GCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAAT
* *
40999126 ACCCTCATGTTTTCTGACCAGGTAAATTTCGAGGCTGAAATTTTGTTAAAGGGGTAGAGTTGTAA
259 ACCCTCATCTTTTCTGACCAGGTAAATTTCAAGGCTGAAATTTTGTTAAAGGGGTAGAGTTGTAA
* ** * * * * *
40999191 TGCCCTGAAATTTAAGTTTCAAACATTT-GCATGTTTTGACACAAATTGCTTGTTTGCTTTATTG
324 CGCCCCAAAATTTAAGTCTCTAA-TTTTGGCATGTTTTGAAACAAATTGCTTGTTTGCTTTAATG
* * * * *
40999255 GCAAAGAGATTTTGGTGTGTGTGGGAGTATTTGAGAAACCCTGGGTTCAAGTCATGGCCTTGGCA
388 GCTAAGTGATTTGGGTGTGTGTGGGAGTGTTTGAG-AAGCCTGGGTTCAAGTCATGGCCTTGGCA
*
40999320 CAATTTTTTAGTTTTTCTCTTAAATGAATCTAGACACTGGCACTTAGGCCTTTTATATAGTAATA
452 CAATTTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATAGTAATA
* *
40999385 CTTGTATTATGACACAAAGAGCCTATTGGTCCAGCGGTAGGTTCATTGGGCCTTACCGTGTACTG
517 CTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTG
40999450 CAACGTGTGGGACCGATCGCCTATAAACTTGAGTTGC
582 CAACGTGTGGGACCGATCGCCTATAAACTTGAGTTGC
* * * *
40999487 CTCTGAAATTAGACAAAATTCATTATCTGTTTCACGTCTCCATGCTAAGACGTTATCGCTCTGAT
1 CTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGACGTTATCGCTCTGAT
* *
40999552 CCCACTCACATAGTACTAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCC
66 CCCACTCACATAGTACCAGTTGAAGAGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCC
* * * * * * * *
40999617 AGTGCTGATTTTGGACCGTGAGGTTAAGTTACTAAGGAAGAAACCTATTCCATTTGTCAAAGTGT
131 AGTGATGATTTTGTACCGTGAGGTGAAGTTACTGAGAAAGAAATCTATTCCATTAGTCAAAGTGC
* * * * *
40999682 TTTGGCGTAATGACAGTTCAGAAGAAACCACATGGGAACCTGAAGAGGCGATGTGACAGCAATAC
196 TTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATAC
* * *
40999747 CCTCGTCTTTTCTGACTAGGTAAATTTCAAGGCTGAAATTTTGTTAAATGGGGCAGAGTTGTAAC
261 CCTCATCTTTTCTGACCAGGTAAATTTCAAGGCTGAAATTTTGTTAAA-GGGGTAGAGTTGTAAC
*
40999812 GCCCCAAAATTTAAGTCTCTAATTTTGGCATGTTTTGAAACAAATTGCGTGTTTGCTTTAATGGC
325 GCCCCAAAATTTAAGTCTCTAATTTTGGCATGTTTTGAAACAAATTGCTTGTTTGCTTTAATGGC
* * * * * * *
40999877 TAAGTGATTTAGGTGTGTTTGGGAGTGTTTGAGAAGCTTGGGCTCAAGTCTTGGCCTTTGAACAA
390 TAAGTGATTTGGGTGTGTGTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCATGGCCTTGGCACAA
* *
40999942 TTTTTTA-TTTTTCTCTTAAATAAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTT
455 TTTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATAGTAATACTT
*
41000006 GTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGATTCATTGGGCCTTACCGTGTACTGCAA
520 GTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAA
*
41000071 CGTGTGGGACCGATCGCATATAAACTTGAGTTGC
585 CGTGTGGGACCGATCGCCTATAAACTTGAGTTGC
* *
41000105 CTCTGAAATTAAACCAGATTCATGATGTGTTTCACGTCTCCATGCTAA-AGTGTTATCGCTCTGA
1 CTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGA-CGTTATCGCTCTGA
* * * *
41000169 TCCCACTCACACAGTACCAATTGAAGAGATTGAGGTTAGGCCAGATCTAACCTTCGAGGAGAAGT
65 TCCCACTCACATAGTACCAGTTGAAGAGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGC
* * ** * * * * * * *
41000234 CAGCGATAATTTTGTACTATGCGGTGAAGTTATTGAGAAACAAATCTATTCTATTACTCAAATTA
130 CAGTGATGATTTTGTACCGTGAGGTGAAGTTACTGAGAAAGAAATCTATTCCATTAGTCAAAGTG
* *
41000299 CATTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCAATGCGACAGCAATA
195 CTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATA
*** *** * *
41000364 CCCTCATCTTTTGCATGTTTTGACACAAATTGT-AACGCCCTAAAATTTNNNNNNNNNNNNNNNN
260 CCCTCATCTTTT-C-TG--ACCAGGTAAATT-TCAA-G-GCTGAAATTT----------------
*********************************************
41000428 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
302 --------------------TGTTAAAGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTCTAA
********************* * * *
41000493 NNNNNNNNNNNNNNNNNNNGCA-TGTTTTGACACAAATTGCTTGTTTGCTTTATTGGCTAAGAGA
347 TTTTGGCATGTTTTGAAACAAATTG-CT--------------TGTTTGCTTTAATGGCTAAGTGA
*
41000557 TTTTGGTGTGTGTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCATGGCCTTGGCACAATTTTTTA
397 TTTGGGTGTGTGTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCATGGCCTTGGCACAATTTTTTA
* **
41000622 GTTTTTCTCTTAAATGAATCTAGACACTGGCACTTAGGCCTTTTATATAGCCATACTTGTTTTAT
462 GTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATAGTAATACTTGTTTTAT
*
41000687 GACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAATGTGTGG
527 GACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGG
* *
41000752 GACCAATCGCTTATAAACTTGAGTTGC
592 GACCGATCGCCTATAAACTTGAGTTGC
* * *
41000779 CTCTGAAATTAGACCAGATTCATTATGTGTTT-ATCGTCTCCATGCTAAGGCGTTAACGCTCTGA
1 CTCTGAAATTAGACCAGATTCATGATGTGTTTCA-CGTCTCCATGCTAAGACGTTATCGCTCTGA
* * *
41000843 TCCCACTCACATAGTACTAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTTCGAGTAGAAGC
65 TCCCACTCACATAGTACCAGTTGAAGAGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGC
** * * * *
41000908 CAGTGCGGATTTTGGACCGTGAGGTTAAGTTACTGAGGAAGAAAACTATTCCATTAGTCAAAGTG
130 CAGTGATGATTTTGTACCGTGAGGTGAAGTTACTGAGAAAGAAATCTATTCCATTAGTCAAAGTG
* * *
41000973 TTTTGGCGTAATCACAGTGCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAACAATA
195 CTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATA
* * *
41001038 CCCTCGTCTTTTCTGACCAGGTAAATTTCAAGGCTGAAATTTTATTAATTGGGGTAGAGTTGTAA
260 CCCTCATCTTTTCTGACCAGGTAAATTTCAAGGCTGAAATTTTGTTAA-AGGGGTAGAGTTGTAA
*
41001103 CGCCCCAAAATTTAAGACTCTAATTTTGGCATGTTTTGAAACAAATTGCTTGTTTGCTTTAATGG
324 CGCCCCAAAATTTAAGTCTCTAATTTTGGCATGTTTTGAAACAAATTGCTTGTTTGCTTTAATGG
* * * * * *
41001168 CCAAGTGATTCGGGTGTGTGTGGGAGTGTTTCAGAAGCCTAGGTTCAAGTCTTGGCCTTGGCGCA
389 CTAAGTGATTTGGGTGTGTGTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCATGGCCTTGGCACA
* * *
41001233 A-TTTTTATTTTTTCTCTTAAATGAATCTGGACACTGTCACTTA-GCCTTTTATATATTAATACT
454 ATTTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATAGTAATACT
* * * *
41001296 TGTTTTATGACGCAAAGAGCCTATTGGTCTAGTGGTAGGTTCATTGGGCGTTACCGTGTATTGCA
519 TGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCA
* * *
41001361 ACGTGTCGGACCGATCG-CTCATAAACTAGAGTTTC
584 ACGTGTGGGACCGATCGCCT-ATAAACTTGAGTTGC
* * * * * * * *
41001396 CTCTAAAATTAGACTAGA-GCTATGATTTGTTTCACGTCTCCATGCTAAGGCATTATCACTCTCA
1 CTCTGAAATTAGACCAGATTC-ATGATGTGTTTCACGTCTCCATGCTAAGACGTTATCGCTCTGA
* *
41001460 TCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTCGGCCAGATCTGACCTTCGAGGAGAAGC
65 TCCCACTCACATAGTACCAGTTGAAGAGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGC
* * ** * *
41001525 CAGTG-CGAATTTTGCACCGCAAGGTTAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGT
130 CAGTGATG-ATTTTGTACCGTGAGGTGAAGTTACTGAGAAAGAAATCTATTCCATTAGTCAAAGT
* * * * * * * *
41001589 GCCTTGGCATAATCATAGTTCAGAAGAAGCCACGTAGGAACCTGATGAGGCTAGGCGACAGCAAT
194 GCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAAT
* * *
41001654 ACCCTCATATTTTCCGACCAAGTAAATTT-AGAGGCTGAAATTTTGTTAAAGAGGGTAGAGTTGT
259 ACCCTCATCTTTTCTGACCAGGTAAATTTCA-AGGCTGAAATTTTGTTAAAG-GGGTAGAGTTGT
41001718 AACGCCCCAAAATTTAAGTCTCTAATTTTGGCATGTTTTGAAACAAATTGCTTGTTTGCTTTAAT
322 AACGCCCCAAAATTTAAGTCTCTAATTTTGGCATGTTTTGAAACAAATTGCTTGTTTGCTTTAAT
*
41001783 GGCTAAGTGATTTGGGTGTGTGTGAGAGTGTTTGAGAAGCCTGGGTTCAAGTCATGGCCTTGGCA
387 GGCTAAGTGATTTGGGTGTGTGTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCATGGCCTTGGCA
* *
41001848 TAATTTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATACTAATA
452 CAATTTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATAGTAATA
* * * *
41001913 CTTGTTTTTTGACACAAAGAGCCTATTGGTCTAGTGGTAGGTTTATTGGGCCTTACCGTGTATTG
517 CTTGTTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTG
* * * * ** *** *
41001978 CAACGTGTCGAATCGGTCGGTTATAAACGAAAGTTTC
582 CAACGTGTGGGACCGATCGCCTATAAACTTGAGTTGC
* * * * * * *
41002015 CTCTGAAATTAGACTAGA-GCTATGATTTTTTTCATGTCTCAATGCTAAGGCGTTATCGCTCTGA
1 CTCTGAAATTAGACCAGATTC-ATGATGTGTTTCACGTCTCCATGCTAAGACGTTATCGCTCTGA
* * *
41002079 TCCCACTCACATAGTACCAGTTGAAAAGATTGAGGTTCGGCCAGATCTGACCTTCGAGGAGAAGT
65 TCCCACTCACATAGTACCAGTTGAAGAGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGC
* * * * * *
41002144 CAGTGATGATTTTGTACTGTGCGGTGAAGTTATTGAAAAAGAAATCTATTCCAGTAGTCAAATTG
130 CAGTGATGATTTTGTACCGTGAGGTGAAGTTACTGAGAAAGAAATCTATTCCATTAGTCAAAGTG
*
41002209 CTTTGGCATAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATA
195 CTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATA
* *
41002274 CCCTCATCTTTTCTGACAAGGTAAATTTCGAGGCTGAAATTTTGTTAAAGGGGTAGAGTTGTAAC
260 CCCTCATCTTTTCTGACCAGGTAAATTTCAAGGCTGAAATTTTGTTAAAGGGGTAGAGTTGTAAC
41002339 GCCC
325 GCCC
41002343 TGAAATTTGA
Statistics
Matches: 2351, Mismatches: 424, Indels: 162
0.80 0.14 0.06
Matches are distributed among these distances:
616 5 0.00
617 508 0.22
618 597 0.25
619 635 0.27
620 100 0.04
622 8 0.00
623 2 0.00
624 8 0.00
633 2 0.00
634 2 0.00
658 2 0.00
659 1 0.00
668 8 0.00
669 2 0.00
670 8 0.00
672 2 0.00
673 81 0.03
674 380 0.16
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.31
Consensus pattern (618 bp):
CTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGACGTTATCGCTCTGAT
CCCACTCACATAGTACCAGTTGAAGAGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCC
AGTGATGATTTTGTACCGTGAGGTGAAGTTACTGAGAAAGAAATCTATTCCATTAGTCAAAGTGC
TTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATAC
CCTCATCTTTTCTGACCAGGTAAATTTCAAGGCTGAAATTTTGTTAAAGGGGTAGAGTTGTAACG
CCCCAAAATTTAAGTCTCTAATTTTGGCATGTTTTGAAACAAATTGCTTGTTTGCTTTAATGGCT
AAGTGATTTGGGTGTGTGTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCATGGCCTTGGCACAAT
TTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATAGTAATACTTG
TTTTATGACACAAAGAGCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAAC
GTGTGGGACCGATCGCCTATAAACTTGAGTTGC
Found at i:41002191 original size:619 final size:617
Alignment explanation
Indices: 41000512--41002342 Score: 2749
Period size: 617 Copynumber: 3.0 Consensus size: 617
41000502 NNNNNNNNNN
* * * *
41000512 GCATGTTTTGACACAAATTGCTTGTTTGCTTTATTGGCTAAGAGATTTTGGTGTGTGTGGGAGTG
1 GCATGTTTTGAAACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTGTGGGAGTG
41000577 TTTGAGAAGCCTGGGTTCAAGTCATGGCCTTGGCACAATTTTTTAGTTTTTCTCTTAAATGAATC
66 TTTGAGAAGCCTGGGTTCAAGTCATGGCCTTGGCACAATTTTTTAGTTTTTCTCTTAAATGAATC
* *
41000642 TAGACACTGGCACTTAGGCCTTTTATATAGC-CATACTTGTTTTATGACACAAAGAGCCTATTGG
131 TGGACACTGGCACTTAGGCCTTTTATATA-CTAATACTTGTTTTATGACACAAAGAGCCTATTGG
* * * * *
41000706 TCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAATGTGTGGGACCAATCGCTTATAAACT
195 TCTAGTGGTAGGTTCATTGGGCCTTACCGTGTATTGCAACGTGTCGGACCGATCGCTTATAAACT
* * * * * *
41000771 TGAGTTGCCTCTGAAATTAGACCAGA-TTCATTATGTGTTT-ATCGTCTCCATGCTAAGGCGTTA
260 AGAGTTTCCTCTGAAATTAGACTAGAGCT-ATGATTTGTTTCAT-GTCTCCATGCTAAGGCGTTA
* * *
41000834 ACGCTCTGATCCCACTCACATAGTACTAGTTGAGGAGATTGAGGTTAGGCCAGATCTGACCTTCG
323 TCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTCGGCCAGATCTGACCTTCG
* * *
41000899 AGTAGAAGCCAGTGCGGATTTTGGACCGTGAGGTTAAGTTACTGAGGAAGAAAACTATTCCATTA
388 AGGAGAAGCCAGTGC-GATTTTGCACCGTGAGGTTAAGTTACTGAGGAAGAAATCTATTCCATTA
* * *
41000964 GTCAAAGTGTTTTGGCGTAATCACAGTGCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCG
452 GTCAAAGTGCTTTGGCATAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCG
* * * * *
41001029 ACAACAATACCCTCGTCTTTTCTGACCAGGTAAATTTCA-AGGCTGAAATTTTATTAATTGGGGT
517 ACAGCAATACCCTCATCTTTTCTGACCAAGTAAATTT-AGAGGCTGAAATTTTGTTAA-AGGGGT
41001093 AGAGTTGTAACGCCCCAAAATTTAAGACTCTAATTTTG
580 AGAGTTGTAACGCCCCAAAATTTAAGACTCTAATTTTG
* *
41001131 GCATGTTTTGAAACAAATTGCTTGTTTGCTTTAATGGCCAAGTGATTCGGGTGTGTGTGGGAGTG
1 GCATGTTTTGAAACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTGTGGGAGTG
* * * * *
41001196 TTTCAGAAGCCTAGGTTCAAGTCTTGGCCTTGGCGCAA-TTTTTATTTTTTCTCTTAAATGAATC
66 TTTGAGAAGCCTGGGTTCAAGTCATGGCCTTGGCACAATTTTTTAGTTTTTCTCTTAAATGAATC
* * *
41001260 TGGACACTGTCACTTA-GCCTTTTATATATTAATACTTGTTTTATGACGCAAAGAGCCTATTGGT
131 TGGACACTGGCACTTAGGCCTTTTATATACTAATACTTGTTTTATGACACAAAGAGCCTATTGGT
* *
41001324 CTAGTGGTAGGTTCATTGGGCGTTACCGTGTATTGCAACGTGTCGGACCGATCGCTCATAAACTA
196 CTAGTGGTAGGTTCATTGGGCCTTACCGTGTATTGCAACGTGTCGGACCGATCGCTTATAAACTA
* * * *
41001389 GAGTTTCCTCTAAAATTAGACTAGAGCTATGATTTGTTTCACGTCTCCATGCTAAGGCATTATCA
261 GAGTTTCCTCTGAAATTAGACTAGAGCTATGATTTGTTTCATGTCTCCATGCTAAGGCGTTATCG
*
41001454 CTCTCATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTCGGCCAGATCTGACCTTCGAGG
326 CTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTCGGCCAGATCTGACCTTCGAGG
**
41001519 AGAAGCCAGTGCGAATTTTGCACCGCAAGGTTAAGTTACTGAGGAAGAAATCTATTCCATTAGTC
391 AGAAGCCAGTGCG-ATTTTGCACCGTGAGGTTAAGTTACTGAGGAAGAAATCTATTCCATTAGTC
* * * * * * *
41001584 AAAGTGCCTTGGCATAATCATAGTTCAGAAGAAGCCACGTAGGAACCTGATGAGGCTAGGCGACA
455 AAAGTGCTTTGGCATAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACA
* *
41001649 GCAATACCCTCATATTTTCCGACCAAGTAAATTTAGAGGCTGAAATTTTGTTAAAGAGGGTAGAG
520 GCAATACCCTCATCTTTTCTGACCAAGTAAATTTAGAGGCTGAAATTTTGTTAAAG-GGGTAGAG
*
41001714 TTGTAACGCCCCAAAATTTAAGTCTCTAATTTTG
584 TTGTAACGCCCCAAAATTTAAGACTCTAATTTTG
*
41001748 GCATGTTTTGAAACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTGTGAGAGTG
1 GCATGTTTTGAAACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTGTGGGAGTG
*
41001813 TTTGAGAAGCCTGGGTTCAAGTCATGGCCTTGGCATAATTTTTTAGTTTTTCTCTTAAATGAATC
66 TTTGAGAAGCCTGGGTTCAAGTCATGGCCTTGGCACAATTTTTTAGTTTTTCTCTTAAATGAATC
*
41001878 TGGACACTGGCACTTAGGCCTTTTATATACTAATACTTGTTTTTTGACACAAAGAGCCTATTGGT
131 TGGACACTGGCACTTAGGCCTTTTATATACTAATACTTGTTTTATGACACAAAGAGCCTATTGGT
* * * * * *
41001943 CTAGTGGTAGGTTTATTGGGCCTTACCGTGTATTGCAACGTGTCGAATCGGTCGGTTATAAACGA
196 CTAGTGGTAGGTTCATTGGGCCTTACCGTGTATTGCAACGTGTCGGACCGATCGCTTATAAACTA
* * *
41002008 AAGTTTCCTCTGAAATTAGACTAGAGCTATGATTTTTTTCATGTCTCAATGCTAAGGCGTTATCG
261 GAGTTTCCTCTGAAATTAGACTAGAGCTATGATTTGTTTCATGTCTCCATGCTAAGGCGTTATCG
**
41002073 CTCTGATCCCACTCACATAGTACCAGTTGAAAAGATTGAGGTTCGGCCAGATCTGACCTTCGAGG
326 CTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTCGGCCAGATCTGACCTTCGAGG
* * * * * * * ** *
41002138 AGAAGTCAGTGATGATTTTGTACTGTGCGGTGAAGTTATTGAAAAAGAAATCTATTCCAGTAGTC
391 AGAAGCCAGTG-CGATTTTGCACCGTGAGGTTAAGTTACTGAGGAAGAAATCTATTCCATTAGTC
*
41002203 AAATTGCTTTGGCATAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACA
455 AAAGTGCTTTGGCATAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACA
*
41002268 GCAATACCCTCATCTTTTCTGA-CAAGGTAAATTTCGAGGCTGAAATTTTGTTAAAGGGGTAGAG
520 GCAATACCCTCATCTTTTCTGACCAA-GTAAATTTAGAGGCTGAAATTTTGTTAAAGGGGTAGAG
41002332 TTGTAACGCCC
584 TTGTAACGCCC
41002343 TGAAATTTGA
Statistics
Matches: 1088, Mismatches: 114, Indels: 21
0.89 0.09 0.02
Matches are distributed among these distances:
616 3 0.00
617 509 0.47
618 103 0.09
619 472 0.43
620 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (617 bp):
GCATGTTTTGAAACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTGTGGGAGTG
TTTGAGAAGCCTGGGTTCAAGTCATGGCCTTGGCACAATTTTTTAGTTTTTCTCTTAAATGAATC
TGGACACTGGCACTTAGGCCTTTTATATACTAATACTTGTTTTATGACACAAAGAGCCTATTGGT
CTAGTGGTAGGTTCATTGGGCCTTACCGTGTATTGCAACGTGTCGGACCGATCGCTTATAAACTA
GAGTTTCCTCTGAAATTAGACTAGAGCTATGATTTGTTTCATGTCTCCATGCTAAGGCGTTATCG
CTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTCGGCCAGATCTGACCTTCGAGG
AGAAGCCAGTGCGATTTTGCACCGTGAGGTTAAGTTACTGAGGAAGAAATCTATTCCATTAGTCA
AAGTGCTTTGGCATAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAG
CAATACCCTCATCTTTTCTGACCAAGTAAATTTAGAGGCTGAAATTTTGTTAAAGGGGTAGAGTT
GTAACGCCCCAAAATTTAAGACTCTAATTTTG
Found at i:41002540 original size:230 final size:231
Alignment explanation
Indices: 41002131--41002569 Score: 673
Period size: 230 Copynumber: 1.9 Consensus size: 231
41002121 AGATCTGACC
* * * * * *
41002131 TTCGAGGAGAAGTCAGTGATGATTTTGTACTGTGCGGTGAAGTTATTGAAAAAGAAATCTATTCC
1 TTCGAGGAGAAGCCAGTGAGGATTTTGGACCGTGAGGTGAAGTTACTGAAAAAGAAATCTATTCC
* *
41002196 AGTAGTCAAATTGCTTTGGCATAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGA
66 AGTAGTCAAAGTGCTTTGGCATAATCACAGTCCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGA
* *
41002261 TGCGACAGCAATACCCTCATCTTTTCTGACAAGGTAAATTTCGAGGCTGAAATTTTGTTAAA-GG
131 TGCGACAGCAATACCCTCATCTTTTCTGACAAGGAAAATTTCAAGGCTGAAATTTTGTTAAATGG
41002325 GGTAGAGTTGTAACGCCCTGAAATTTGAGTTTCAAA
196 GGTAGAGTTGTAACGCCCTGAAATTTGAGTTTCAAA
* * **
41002361 TTCGAGGAGAAGCCAGTGCGGATTTTGGACCGTGAGGTTAAGTTACTGAGGAAGAAATCTATTCC
1 TTCGAGGAGAAGCCAGTGAGGATTTTGGACCGTGAGGTGAAGTTACTGAAAAAGAAATCTATTCC
* * * *
41002426 ATTAGTCAAAGTGCTTTGGCGTAATCATAGTCCAGAAGAAGCCACGTGGGAACCCGAAGAGGTGA
66 AGTAGTCAAAGTGCTTTGGCATAATCACAGTCCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGA
* * *
41002491 TGCGACAGTAATACCCTCGTCTTTTCTGACCAGGAAAATTTCAAGGCTGAAATTTTGTTAAATGG
131 TGCGACAGCAATACCCTCATCTTTTCTGACAAGGAAAATTTCAAGGCTGAAATTTTGTTAAATGG
*
41002556 TGTAGAGTTGTAAC
196 GGTAGAGTTGTAAC
41002570 ACCCCAAAAT
Statistics
Matches: 186, Mismatches: 22, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
230 171 0.92
231 15 0.08
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (231 bp):
TTCGAGGAGAAGCCAGTGAGGATTTTGGACCGTGAGGTGAAGTTACTGAAAAAGAAATCTATTCC
AGTAGTCAAAGTGCTTTGGCATAATCACAGTCCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGA
TGCGACAGCAATACCCTCATCTTTTCTGACAAGGAAAATTTCAAGGCTGAAATTTTGTTAAATGG
GGTAGAGTTGTAACGCCCTGAAATTTGAGTTTCAAA
Found at i:41005003 original size:618 final size:618
Alignment explanation
Indices: 41004377--41015789 Score: 14548
Period size: 618 Copynumber: 18.5 Consensus size: 618
41004367 NNNNNNNNNN
* ** * *
41004377 GTAAATTTCGAGGCTGAAATTTTGTTAAA-GGGGTAGAGTTGTAAAGCCCTGAAATTTGAGTTTC
1 GTAAATTTCGAGGCTGAAATTTTGTTAAATGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTC
* * * * *
41004441 AAATTTTTGCATGTTTTGACACAAATTGCTTGTTTACTTTATTGGCTAAGAGATTTTGGTGTGTG
66 TAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTG
* * * *
41004506 TGGCAGTATTTGAGAAGCCTGGGTTCAAGTCATGGCCTTGGCACAATTTTTTAGTTTTTCCCTTA
131 TGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTTAGTTTTTCTCTTA
* * * *
41004571 AATGAGTCTAGACACTGGCACTTAGGCCTTTTATATAGTAATACTTGTTTTATGACTCAAAGAGC
195 AATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGC
* * * *
41004636 CTATTGGTTCAGCGGTAGGTTCGTTGGGCCTTACCGTATACTGCAACGTGTGGGACCGATCGCTT
260 CTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTT
* * * * * *
41004701 ATACACTTAAGTTGCCTCTGAAATTAGACGAGATTCATTATGTGTTTCACGTCTCTATGCTTAGG
325 ATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGG
* * *
41004766 CGTTATCGCTCTGATCCCACTCACATAGTACTAGTTGAAGAGATTGAGCTTAGGCAAGATCTGAC
390 CGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAAGAGATTGAGGTTAGGCCAGATCTGAC
* * *
41004831 CTTCGAGGAGAAGCCAGTGCTGATTTTGGACTGTGAGGTTAAGTTACTGAGGAAGAAATCTATTC
455 CTTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGAGGTTAAGTTACTGAGGAAGAAATCTATTC
* *
41004896 CATTAGTCAAAGTGCTTTGGCGTAATCATAGTCCAGAAGAAGCCACGTGGGAACCCGAAGAGGCG
520 CATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCG
* *
41004961 ATGCGACAGTAATACCCTCGTCTTTTCTGACCAG
585 ATGCGACAGCAATACCCTCATCTTTTCTGACCAG
* * * * *
41004995 GAAAATTTCAAGGCTGAAATTTTGTTAAATGGTGTAGAGTTGTAACACCCCAAAATTTAAGTATC
1 GTAAATTTCGAGGCTGAAATTTTGTTAAATGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTC
* * *
41005060 TAATTTTT-CTATGTTATGAAACAAATTGCTTGTTTGCTTTAATGGCTAAGGGATTTGGGTGTGT
66 TAATTTTTGC-ATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGT
* * *
41005124 GTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTATTAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
130 GTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGC---------------------------C
*****************************************************************
41005189 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
168 TTGGCACAATTTTTAGTTTTTCTCTTAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATAT
********* * ** * * * * * ** *
41005254 NNNNNNNCCTTTTAT-ATATTAATA-CTTGTTTTATGACACAAAAAGCCTATTGGTCCAGTGGTA
233 TAATACTTGTTTTATGACACAAAGAGC--CTATT-GGTC-C----AG--TGGT-A----------
* * *
41005317 GGTTCATTGGGCCTTACCGTGTACTGCAACATGTGGGGCCGATCGCATATAAACTTGAGTTGCCT
277 GGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTATAAACTTGAGTTGCCT
* * * *
41005382 CTGAAATTAAACCAGATTCATGATATGTTTCACGTCTCCATGCTAAAGTGTTATCGCTCTGATCC
342 CTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGCGTTATCGCTCTGATCC
* * * * * *
41005447 CATTCACACAGTACCAATTGAAGAGATTAAGGTTAGGCCAGGTCTGACCTTCGAGGAGAAGTCAG
407 CACTCACATAGTACCAGTTGAAGAGATTGAGGTTAGGCCAGATCTGACCTTCGAGGAGAAGCCAG
* * * * * *
41005512 TG-ATGA-TTTGTACTGT-ACGGTGAAGTTATTGAGAAAGAAATCTATTCCAGTAGTCAAATTGC
472 TGCA-GATTTTGTACCGTGA-GGTTAAGTTACTGAGGAAGAAATCTATTCCATTAGTCAAAGTGC
41005574 TTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATAC
535 TTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGATGCGACAGCAATAC
*
41005639 CCTCGTCTTTTCTGACCAG
600 CCTCATCTTTTCTGACCAG
* * * *
41005658 GAAAATTTCAAGGCTGAAATTTTGTTAAATGGGGTAGAGTTGTAACACCCCAAAATTTAAGTATC
1 GTAAATTTCGAGGCTGAAATTTTGTTAAATGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTC
* *
41005723 TAATTTTTGTATGTTTTGAAACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTG
66 TAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTG
* * * * *
41005788 TGGGAGTGTTTGAGAAGCCTGGGTTCAAGTATTAGCCTTGGCACAATTTTAATTTTTTCCCTTAA
131 TGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAA
*
41005853 ATGAATCTGGACAGTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
196 ATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
* * *
41005918 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGCGGGGCCGATCGCATA
261 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTA
* * * * *
41005983 TAAACTTGAGTTGTCTCTAAAATTAAACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAAGT
326 TAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGC
* * * * *
41006048 GTTATCACTCTGATCCCATTCACATAGTACCAATTGAAGAGATTAAGGTTAGGCCAGGTCTGACC
391 GTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAAGAGATTGAGGTTAGGCCAGATCTGACC
* * * * * * * *
41006113 TTCGAGGAGAAGTCAGTG-ATGATTTTGTACTGTGCGGTGAAGTTATTGTGAAAGAAATCAATTC
456 TTCGAGGAGAAGCCAGTGCA-GATTTTGTACCGTGAGGTTAAGTTACTGAGGAAGAAATCTATTC
** *
41006177 CAGCAGTCAAATTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCG
520 CATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCG
41006242 ATGCGACAGCAATACCCTCATCTTTTCTGACCAG
585 ATGCGACAGCAATACCCTCATCTTTTCTGACCAG
** * *
41006276 GTAAATTTCGAGGCTGAAATTTTGTTAAA-GGGGTAGAGTTGTAACGCCCTGAAATTTGAGTTTC
1 GTAAATTTCGAGGCTGAAATTTTGTTAAATGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTC
* * * *
41006340 AAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTATTGGCTAAGAGATTTTGGTGTGTG
66 TAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTG
* * *
41006405 TGGGAGTATTTGAGAAGCCTTGGTTCAAGTCATGGCCTTGGCACAATTTTTTAGTTTTTCTCTTA
131 TGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTTAGTTTTTCTCTTA
* * * *
41006470 AATGAATCTAGACACTGGCACTTAGGCCCTTTATATAGTAATACTTGTTTTATGACTCAAAGAGC
195 AATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGC
* *
41006535 CTATTGGTTCAGCGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTT
260 CTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTT
* * * *
41006600 ATAAACTTGAGTTGCCTCTGAAATTAGACGAGATTCATTATGTGTTTCACGTCTCTATGCTTAGG
325 ATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGG
* * *
41006665 CGTTATCGCTCTGATCCCACTCACATAGTACTAGTTGAAGAGATTGAGCTTAGGCAAGATCTGAC
390 CGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAAGAGATTGAGGTTAGGCCAGATCTGAC
* * *
41006730 CTTCGAGGAGAAGCCAGTGCTGATTTTGGACTGTGAGGTTAAGTTACTGAGGAAGAAATCTATTC
455 CTTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGAGGTTAAGTTACTGAGGAAGAAATCTATTC
* *
41006795 CATTAGTCAAAGTGCTTTGGCGTAATCATAGTCCAGAAGAAGCCACGTGGGAACCCGAAGAGGCG
520 CATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCG
* *
41006860 ATGCGACAGTAATACCCTCGTCTTTTCTGACCAG
585 ATGCGACAGCAATACCCTCATCTTTTCTGACCAG
* * * * *
41006894 GAAAATTTCAAGGCTGAAATTTTGTTAAATGGTGTAGAGTTGTAACACCCCAAAATTTAAGTATC
1 GTAAATTTCGAGGCTGAAATTTTGTTAAATGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTC
* * *
41006959 TAATTTTT-CTATGTTATGAAACAAATTGCTTGTTTGCTTTAATGGCTAAGGGATTTGGGTGTGT
66 TAATTTTTGC-ATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGT
* * * * *
41007023 GTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTATTAGCCTTGGCACAATTTTAATTTTTTCCCTTA
130 GTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTA
* * *
41007088 AATGAATCTAGACAGTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAAAGC
195 AATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGC
* * *
41007153 CTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACATGTGGGGCCGATCGCAT
260 CTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTT
* * *
41007218 ATAAACTTGAGTTGCCTCTGAAATTAAACCAGATTCATGATATGTTTCACGTCTCCATGCTAAAG
325 ATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGG
* * * * * *
41007283 TGTTATCGCTCTGATCCCATTCACACAGTACCAATTGAAGAGATTAAGGTTAGGCCAGGTCTGAC
390 CGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAAGAGATTGAGGTTAGGCCAGATCTGAC
* * * * *
41007348 CTTCGAGGAGAAGTCAGTG-ATGA-TTTGTACTGT-ACGGTGAAGTTATTGAGAAAGAAATCTAT
455 CTTCGAGGAGAAGCCAGTGCA-GATTTTGTACCGTGA-GGTTAAGTTACTGAGGAAGAAATCTAT
* *
41007410 TCCAGTAGTCAAATTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGG
518 TCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGG
*
41007475 CGATGCGACAGCAATACCCTCGTCTTTTCTGACCAG
583 CGATGCGACAGCAATACCCTCATCTTTTCTGACCAG
* * * *
41007511 GAAAATTTCAAGGCTGAAATTTTGTTAAATGGGGTAGAGTTGTAACACCCCAAAATTTAAGTATC
1 GTAAATTTCGAGGCTGAAATTTTGTTAAATGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTC
* *
41007576 TAATTTTTGTATGTTTTGAAACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTG
66 TAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTG
* * * *
41007641 TGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTAGCCTTGGCACAATTTTAATTTTTTCCCTTAA
131 TGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAA
* *
41007706 ATGAATCTGGATAGTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
196 ATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
* *
41007771 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGGCCGATCGCATA
261 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTA
* * * *
41007836 TAAACTTGAGTTGCCTCTGAAATTAAACCAGATTCATGATGTGTTTCACGTCTCCATACTAAAGT
326 TAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGC
* * * * * * * * *
41007901 GTTATCGCTCTAATCCCATTCATACAATACCAATTGAAGAGATTAAGGTTAGGCTAGGTCTGACC
391 GTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAAGAGATTGAGGTTAGGCCAGATCTGACC
* * * ** **
41007966 TTCGAGGAGAAGTCAGTGTAGATTTTGTACCGT-ACGGTGAAGTTTTTGAAAAAGAAATCTATTC
456 TTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGA-GGTTAAGTTACTGAGGAAGAAATCTATTC
* * **
41008030 CATTAGTCAAATTGCATTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGTA
520 CATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCG
* * *
41008095 ATGTGACAGCAATACCTTCATCTTTTTTGACCAG
585 ATGCGACAGCAATACCCTCATCTTTTCTGACCAG
* * * *
41008129 GTAAATTTTGAGGCTGAAATTTTGTTAAA-AGGGTAGAGTTGTAACGCCCTAAAATTTAAGTTTC
1 GTAAATTTCGAGGCTGAAATTTTGTTAAATGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTC
* * * * * *
41008193 AAATTTTTACATGTTTTGACACAAATTTCTTGTTTGCTTTATTAGG-TAAGAGATTTTGGTGTGT
66 TAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAAT-GGCTAAGTGATTTGGGTGTGT
*
41008257 GTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCAT-GCCTTTGGCACAATTTTTTAGTTTTTCTCT
130 GTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCC-TTGGCACAA-TTTTTAGTTTTTCTCT
* * *
41008321 TTAATGAATCTAGACACTGGCACTTAGGCCTTTTATATAGTAATACTTGTTTTATGACACAAAGA
193 TAAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGA
* *
41008386 GCCTATTGGTCCTGTGGTAGGTTCATTGGGCCTTACCGTCTACTGCAACGTGTGGGACCGATCGC
258 GCCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGC
* *
41008451 TTATAAACTTGAGTTGCCTCTGAAATTAGACTAGATTCATTATGTGTTT-ATCGTCTCCATGCTA
323 TTATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCA-CGTCTCCATGCTA
*
41008515 AGGCGTTATCGCTCTGATCCCACTCACATAGTACTAGTTG-AGAAGATTGAGGTTAGGCCAGATC
387 AGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAAG-AGATTGAGGTTAGGCCAGATC
*
41008579 TGACCTTCGAGGAGAAGCCAGTGC-GAATTTTGCACCGTGAGGTTAAGTTACTGAGGAAGAAATC
451 TGACCTTCGAGGAGAAGCCAGTGCAG-ATTTTGTACCGTGAGGTTAAGTTACTGAGGAAGAAATC
* *
41008643 TATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAATTCAGAAGAAGCCATGTGGGAACCCGAAG
515 TATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAG
* *
41008708 AGGCGATGCAACAGCAATACCCTCATCTTTTCTGATCAG
580 AGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAG
* * *
41008747 GTAAATTTTGAGGTTGAAATTTTGTTAAATGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCAC
1 GTAAATTTCGAGGCTGAAATTTTGTTAAATGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTC
* ** *
41008812 TAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAACGGCTAAGTGAGCTGGGTGTGTA
66 TAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTG
* * **
41008877 TGGGAGTGTTTGAGAAGCTTGGGTTCAAGTGTTTTCCTTGGCACAATTTTTAGTTTTTCTCTTAA
131 TGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAA
* * *
41008942 ATGAATCTGGACACTGGCACTTAGGTCTTTTATATATTAAAACCTGTTTTATGACACAAAGAGCC
196 ATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
* * * * * * *
41009007 TATTGGTCAAGTGGTAGGTTGATTGGGTCTTACCGTGTATTGCAACATATGGGACCGATCGCATA
261 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTA
* * * * *
41009072 TAAACTAGAGTTTCCTCTAAAATTAGACCAGATTCATGATGTCTTCCACGTCTCCATGCTAAGGC
326 TAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGC
* *
41009137 GTTATTGCTCTGATCCCACTCACATAGTACCAGTT-AAGAGGATTAAGGTTAGGCCAGATCTGAC
391 GTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAAGA-GATTGAGGTTAGGCCAGATCTGAC
* * * * * *
41009201 CTTCGACGAGAAGCCAGTGCAGATTTTGGATCATGAGGTTAAGTTAGTAAGGAAGAAATCTATTC
455 CTTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGAGGTTAAGTTACTGAGGAAGAAATCTATTC
*
41009266 CATTACTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCC-CTGTGGGAACCCGAAGAGGC
520 CATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCAC-GTGGGAACCCGAAGAGGC
* * *
41009330 GACAG-GACAGCAATACCCTCTTCCTTTCTGACCAG
584 GA-TGCGACAGCAATACCCTCATCTTTTCTGACCAG
* * * * *
41009365 GTAAATTTCGAGGTTG-AATTTTGTTAAAAGGGGTATAGTTGTAACACCCTAAAATTTAAGTCTC
1 GTAAATTTCGAGGCTGAAATTTTGTTAAATGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTC
* * * * ** * *
41009429 TAATTTTTGCATGTTTAGACTCAAATTGCTTGTTTGTTTTAATGTCTATTTGATTTGGGCGTGTA
66 TAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTG
* *
41009494 TGGGAGTGTTTGAAAAGCCTGGGTTCAAGTCTTGGCCTTGACACAATTTTTAGTTTTTCTCTTAA
131 TGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAA
* * *
41009559 ATGAATCTGGACACTGACACTTAGG-TTTTTATATATTAATACTTGTTTAATGACACAAAGAGCC
196 ATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
*** * *
41009623 TATTGGTCCAGTGGTAGGTTCATTGCATCTTACCGTGTACTGAAATGTGTGGGACCGATCGCTTA
261 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTA
*
41009688 TAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGATAAGGC
326 TAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGC
* * * * * * * * *
41009753 ATTATCACTCTGATCCCACTCACATAATACCAGTTGAGGAGATTGATGTTCGACCAAATCTGGCC
391 GTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAAGAGATTGAGGTTAGGCCAGATCTGACC
* * * *
41009818 TTCAAGGATAAGCCAGTGCAGATTTTGGACCGTGAGGTTAAGTTATTGAGGAAGAAATCTATTCC
456 TTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGAGGTTAAGTTACTGAGGAAGAAATCTATTCC
* * *
41009883 ATTACTCAAAGTGCCTTGGCGTAATCACAGTTTAGAAGAAGCCACGTGGGAACCCGAAGAGGCGA
521 ATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGA
*
41009948 TGCGGCAGCAATACCCTCATCTTTTCTGACCAG
586 TGCGACAGCAATACCCTCATCTTTTCTGACCAG
* * * *
41009981 GTAAATTTCGAGG-TCAAAATTTTGTTAAA-GCGGGTAGAGTTGTAATGCCCTAAAATTTAACTC
1 GTAAATTTCGAGGCT-GAAATTTTGTTAAATG-GGGTAGAGTTGTAACGCCCCAAAATTTAAGTC
* * *
41010044 TCCAATTTTTGCATGTTTTGACACAAATTGCTTGTTTTCTCTAATGGCTAAGTGA--------T-
64 TCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTG
* * *
41010100 T-T--GATTGTTTGAGAAGCCTGGGTTAAAGTCTTGGCCTTGGCATAATTTTTAGTTTTTCTCTT
129 TGTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTT
* *
41010162 AAATGAATCTGGACACTGGCACTTAGACCTTTTATATATTAATACTTGTTTTATGACACAAATAG
194 AAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAG
* * * **
41010227 CCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACTGTGTTCTGCAAATGTGTGGGACTAATCGC
259 CCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGC-AACGTGTGGGACCGATCGC
* * * * *
41010292 TTATAAGCTTGAGTTGCCTCTTAAATTAGACCAGATTCATGATGTGCTTCATGTCTCCATGCCAA
323 TTATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAA
* *
41010357 GGCGTTATCGCTCTGATCCCACTTACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTG
388 GGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAAGAGATTGAGGTTAGGCCAGATCTG
* * * * *
41010422 ACCTTCGAGGAGATGCCAG-GACAGAATTT-CACCCGTGAGGTTAAGGTCCTGAGGAAGAAATCT
453 ACCTTCGAGGAGAAGCCAGTG-CAGATTTTGTA-CCGTGAGGTTAAGTTACTGAGGAAGAAATCT
* * * *
41010485 ATTCCATTAGTCAAAATGCTTTGGCGTACTCACAGTTCAGAAGAAGCCATGTGGGAACCCAAAGA
516 ATTCCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGA
*
41010550 GGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAA
581 GGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAG
* * * *
41010588 GTAAATTTCGAGG-TCAAAATTTTGTTAAAAGGGATAGAGTTGTAACGCCTCAAAATTTAAGTCT
1 GTAAATTTCGAGGCT-GAAATTTTGTTAAATGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCT
* * * * * * *
41010652 CTAATTTTTGCTTGTTTTGAGACAAATTGCTTGTTTGTTTTACTAGCTAAGTGATTTTGGTGTGC
65 CTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGT
* * * *
41010717 ATGAGAGTGTTTGAGAAGCCTGAGTTCAAGTCTTGGCCTTGGCACAATTTTTAATTTTTCTCTTA
130 GTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTA
* *
41010782 AATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAGTACTTTTTTTATGACACAAAGAGC
195 AATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGC
*
41010847 CTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGAAACGTGTGGGACCGATCGCTT
260 CTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTT
*
41010912 ATAAACTTGAGTTAG-CTCTGAAATTAGACCAGATTCATGATGTGTTTCATGTCTCCATGCTAAG
325 ATAAACTTGAGTT-GCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAG
* * * *
41010976 GCATTATCGCTCTGATCCCACTCACATAGTACCAATTGAGGAGAATGAGGTTAGGCCAGATCTGA
389 GCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAAGAGATTGAGGTTAGGCCAGATCTGA
* *
41011041 CCATCGAGGAGAAGCTAGTGCAGATTTT-TGACCGTGAGGTTAAGTTACTGAGGAAGAAATCTAT
454 CCTTCGAGGAGAAGCCAGTGCAGATTTTGT-ACCGTGAGGTTAAGTTACTGAGGAAGAAATCTAT
* *
41011105 TCCATTAGTGGAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTAGGAACCCGAAGAG
518 TCCATTAGT-CAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAG
*
41011170 GCGTTGCGACAGCAATACCCTCATCTTTTCTGACCAG
582 GCGATGCGACAGCAATACCCTCATCTTTTCTGACCAG
* * * * *
41011207 GTAAATTTCAAGGTTAAAATTTTGTTAAAGGGGGTAGGGTTGTAACGCCCCAAAATTTAAGTCTC
1 GTAAATTTCGAGGCTGAAATTTTGTTAAATGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTC
* * * * * *
41011272 TATTTTTTGCACG-TTCGACACAAATTACTTATTTGCTTTAATGGCTAAGTGATTTGGGTGTGTA
66 TAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTG
* * *
41011336 TGGGAGTGTCTGTGAAGCCTAGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAA
131 TGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAA
* * *
41011401 AGGAATCTAGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTGTATGACACAAAGAGCC
196 ATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
* * * * * * *
41011466 TATTAGTCTAGTGGCAGCTTCATTGGGCCTTACCGTGTACTGAAACGTGTGGGACCGATCTCTTC
261 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTA
* * * * * *
41011531 TAAACTAGAGTTTCCTTTGATATTGGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAAGC
326 TAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGC
* * *
41011596 GTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGACAGATCTAACC
391 GTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAAGAGATTGAGGTTAGGCCAGATCTGACC
* * * * *
41011661 TTCGAGGAGAAGCTAGTGCAGATTTTCG-ACCGTGAGGTTTAGTTACCGAGGGAGAAACCTATTC
456 TTCGAGGAGAAGCCAGTGCAGATTTT-GTACCGTGAGGTTAAGTTACTGAGGAAGAAATCTATTC
* * *
41011725 CATTAGTCAAAGTGCTTTGGCGTAATCATAGTTGAGAAGAAGTCACGTGGGAACCCGAAGAGGCG
520 CATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCG
* * * *
41011790 ATGCGACAGTAATACTCTCATCTTTTCTAACCAA
585 ATGCGACAGCAATACCCTCATCTTTTCTGACCAG
* * * * * * *
41011824 GTAAATTTTGGGGTTGAAATTTTGTTAAATGGGGTAGAGTTGTAACTCCTCAAAATTTATGTGTC
1 GTAAATTTCGAGGCTGAAATTTTGTTAAATGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTC
* * * ** *
41011889 TACTTTTTGCATGTTTTGACACAAATTGCTTGATTGTTTTAATATCTATGTGATTTGGGTGTGTG
66 TAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTG
*
41011954 TGGGAGTGTTTAAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAA
131 TGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAA
* * * *
41012019 ATGAATCTGGACCCTGGTACTTAGGCCTTTTATATATTAATA-TTTTTTTATGACTCAAAGAGCC
196 ATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
* * * * *
41012083 TATTGGTCCAATGGTAGGTTCATTGGGCCTTACCGTGTACTG-AATGGTGTCGAACCGATCACTT
261 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAA-CGTGTGGGACCGATCGCTT
* *
41012147 ATAAACTTGAGTTGCCTCCGAAATTAGACCAGATTCATGATGTGTTTCAGGTCTCCATGCTAAGG
325 ATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGG
* * * * * * * *
41012212 CGTTATTGCTCTAATCCCACTCATATTGTACCAGTTGAGGAAATTAAGGTTAGGCCAGATTTGAC
390 CGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAAGAGATTGAGGTTAGGCCAGATCTGAC
* * *
41012277 CTTCGAGGAGAAGCCAGTGCAGAATTTGCACCGTGAGGTTAAGGTACTGAGGAAGAAATCTATTC
455 CTTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGAGGTTAAGTTACTGAGGAAGAAATCTATTC
*
41012342 CATTAGTCAAAGTGCTTTGGCATAATCACAG-T----AG-AG----GT------------A----
520 CATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCG
* *
41012381 ATGCGACAGCAATACCCTCATATTTTCTGACCAA
585 ATGCGACAGCAATACCCTCATCTTTTCTGACCAG
* *
41012415 GTAAATATCGAGG-TCAAAATTTTGTTAAA-GGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCT
1 GTAAATTTCGAGGCT-GAAATTTTGTTAAATGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCT
* * * *
41012478 CTAATTTTTGCATGTTTAGAAACAAATTGCTTGTTTGCTTTAATGGCTACGTGATTTGGGTATGT
65 CTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGT
* * * *
41012543 ATGGGAGTGTTTGACAAGCCTGGGTTAAAGTCTTGGCCTTGGCATAATTTTTAGTTTTTCTCTTA
130 GTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTA
* *
41012608 AATGAATCTGGACAGTGGCACTTAGACCTTTTATATATTAATACTTGTTTTATGAC-CAAAGAGC
195 AATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGC
* * * * **
41012672 CTATTGGTCTAGTGGTAGGTTCATTGGGCCTTACTGTGTTCTGCAATGTGTGGGACTAATCGCTT
260 CTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTT
* *
41012737 ATAAACTTGAGTTGCCTCTTAAATTAGACCAGATTCATGATGTGTTTCATGTCTCCATGCTAAGG
325 ATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGG
*
41012802 CGTTATCGCTCTGATCCCACTTC-CATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGA
390 CGTTATCGCTCTGATCCCAC-TCACATAGTACCAGTTGAAGAGATTGAGGTTAGGCCAGATCTGA
* * * * * *
41012866 CCTTCGAGGAGAAGCCAATACAGATTTTATACCATGAGTTTAAGTTACTAAGGAAGAAATCTATT
454 CCTTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGAGGTTAAGTTACTGAGGAAGAAATCTATT
* *
41012931 CCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACCTGGGAACCCGAAGAAGC
519 CCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGC
* * * *
41012996 GATGCGACAGTAATACCCTCATCCTCTCTGACTAG
584 GATGCGACAGCAATACCCTCATCTTTTCTGACCAG
* * *
41013031 GTAAAATTT-GAGG-TCGAAATTTTTTTAAAAGGGGTAGGGTTGTAACGCCCCAAAATTTAAGTC
1 GT-AAATTTCGAGGCT-GAAATTTTGTTAAATGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTC
* *
41013094 TCTAATTTTTGCATGTTTTGAAAAAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTG
64 TCTAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTG
* * *
41013159 TATGGGAGTTTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTTGCACAATTTTTAGTTTTTCTCTT
129 TGTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTT
* * * *
41013224 AAATGAATCTGGACACTGGCACTAAGGCCTTTTATATGTTACTACTTGTTTTATGACGCAAAGAG
194 AAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAG
* ** * ** *
41013289 CCTATTGGTCCAGTGGTAGGTTCATTGGGGCTTACCGTGTACTAAAACATGTGGGACTAATCGCA
259 CCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCT
* * *
41013354 TATAAACTTGAGTTTCCTCTGAAATTAGACCAAAGTCATGATGTGTTTCACGTCTCCATGCTAAG
324 TATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAG
* * * * * * *
41013419 GCGTTATCGCTTTGATCACGCTCATATAGTACCTGTTGAAGAGATTGAGGTTAGACCAAATCTGA
389 GCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAAGAGATTGAGGTTAGGCCAGATCTGA
* * *
41013484 CCTTCGAGGAGAAGCCAGTGCAGATTTTGTACCATGAGGTTGAGGTACTGAGGAAGAAATCTATT
454 CCTTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGAGGTTAAGTTACTGAGGAAGAAATCTATT
* * * * * ** *
41013549 CCATTAGTCAAAGTGCTTTGGCGTAATAATAGTTGAGAAGAAGCCACGCGCGAACTTGATGAGGC
519 CCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGC
* *
41013614 GATGCGACAGTAATA-CCTCATCTTTTCTGACTAG
584 GATGCGACAGCAATACCCTCATCTTTTCTGACCAG
** * * *
41013648 GTAAATTTCGAGGCCAAAATTTTCTTAAAGGGGGTAGAGTTGTAACACCCCAAAATTTAAGTCTC
1 GTAAATTTCGAGGCTGAAATTTTGTTAAATGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTC
* * * * *
41013713 TAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGCCTAAGTGATTTGGGTGTATA
66 TAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTG
* *
41013778 TGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCATGGCCTTGGCACAATTTTTTAGTTTTTCTCTCA
131 TGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAA-TTTTTAGTTTTTCTCTTA
* * *
41013843 AATGAATCTGGACATTGGCACTTGGGCCTTTTATATATTACTACTTGTTTTATGACACAAAGAGC
195 AATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGC
*
41013908 CTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCAG-GCCTTACCATGTACTAAAACATGTGGG
260 CTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACC-GTG---TA-C-TG--C---AACGTGTGGG
* * *
41013972 ACTGATCGCATATAAACTTGAGTTTCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCT
314 ACCGATCGCTTATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCT
* **
41014037 CCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACTAGTTGGGGAGATTGAGGTTAGG
379 CCATGCTAAGGCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAAGAGATTGAGGTTAGG
* * * * *
41014102 TCAGATCTTACCTTCGAGGAGAAGCCAGTGTAGATTTTGTACCGTGGGGTTAAGGTACTGAGGAA
444 CCAGATCTGACCTTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGAGGTTAAGTTACTGAGGAA
*
41014167 GAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAAT-AGTAGTTCAGAAGAAGCCACGTGGGAA
509 GAAATCTATTCCATTAGTCAAAGTGCTTTGGCGTAATCA-CAGTTCAGAAGAAGCCACGTGGGAA
* * * * * *
41014231 TCTGAGGGGGCGATGCGATAACAATACCCTCATCTTTTCTGACCAG
573 CCCGAAGAGGCGATGCGACAGCAATACCCTCATCTTTTCTGACCAG
* * * **
41014277 GTAAAGTTCTAGGCCGAAATTTCCTTAAA-GGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTC
1 GTAAATTTCGAGGCTGAAATTTTGTTAAATGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTC
* * * * *
41014341 TAATGTTTGCATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTAGGTTTGTA
66 TAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTG
41014406 TGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAA
131 TGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAA
* *
41014471 ATGAATCTGGACACTGGCACATAGGCCTTTTATATATTAATACTTGTTTTATGGCACAAAGAGCC
196 ATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
41014536 -ATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTA
261 TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTA
* * * *
41014600 TATACTTGAGTTGCCTCTGAGATTAGACTAGATTCATGATGTGTTTCACATCTCCATGCTAAGGC
326 TAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGC
* * * * * *
41014665 TTTATCTCTTTGATCCCACTCACATAGTACCAGTT-AAGGAGATTAAGGTTAGGTCAGATTTGAC
391 GTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAA-GAGATTGAGGTTAGGCCAGATCTGAC
* * * *
41014729 CTTCGAGGAGAAGCCAGTACAGAGTTTGGACCGTGAGGTTAAGGTACTGAGGAAGAAATCTATTC
455 CTTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGAGGTTAAGTTACTGAGGAAGAAATCTATTC
*
41014794 CATTAGTCAAACTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCG
520 CATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCG
* * *
41014859 ATGCGCCAGCAATACCCTCAGCTTTTCTTACCAG
585 ATGCGACAGCAATACCCTCATCTTTTCTGACCAG
* * * * * *
41014893 GTAAATTTCGAGG-TCAAAATTTTGTTAAAGGGGGTAGAGTTGTAACACCACAAAATTGAAGACT
1 GTAAATTTCGAGGCT-GAAATTTTGTTAAATGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCT
* *
41014957 CTAATTTTTGCATGTTTTG-CTAAAAATTGCTTGTTTGTTTTAATGGCTAAGTGATTTGGGTGTG
65 CTAATTTTTGCATGTTTTGAC-ACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTG
** * * *
41015021 CATGGGAGTGTTTGAGAAGCTTGGGTTCAAGTCTTAGCCTTGACACAATTTTTAGTTTTTCTCTT
129 TGTGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTT
* * * *
41015086 AAACGAATCTGAACACTGGCACTTAGGCCTTTTATATATTAATACTTGGTTTACGACACAAAGAG
194 AAATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAG
* * * * * * **
41015151 CCTATTGGTCCAGTGGTACGTTCATTCGGCCTTACCGTGTACTGAAACTTGTGCGACTGATAACT
259 CCTATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCT
* * * *
41015216 TATAAACTTGATTTGCCTCTAAAATTAGACCAGATTCATGATGTGTTGCACGTCTCTATGCTAAG
324 TATAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAG
* *
41015281 GCGTTATCACTCTGATCCCACTCACATAGTACCAGTTGAGGAGATTGAGGTTAGGCCAGATCTGA
389 GCGTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAAGAGATTGAGGTTAGGCCAGATCTGA
* * * * * * * * *
41015346 CCATCGAGGAAAAGCCAGCGCGGATTTTATACCGTGAGGTTATGGTACTGAGGAAGAAACCAATT
454 CCTTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGAGGTTAAGTTACTGAGGAAGAAATCTATT
* * * *
41015411 CCATTAGTCAAAGTGGTTTGGCGTAATGACAGTTGAGAAGAAGCCACGTGGGAACCCGAAAAGGC
519 CCATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGC
* *
41015476 GATGCGATAGCAATACCCTCATCTTTTCGGACCAG
584 GATGCGACAGCAATACCCTCATCTTTTCTGACCAG
* * ** *
41015511 GTAAATTTTGAGGCCGAAATTTCCTTAAAGGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTC
1 GTAAATTTCGAGGCTGAAATTTTGTTAAATGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTC
* * * * *
41015576 TAATGTTTACATGTTTAGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGATGTGTA
66 TAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTG
* *
41015641 TGTGG-GTGTTTGAGGAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTTTTA
131 TG-GGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTA
* * * *
41015705 AATGAATCTAGACATTGGCAGTTAGG-CTTTTGATGTATTAATACTTGTTTTATGACACAAAGAG
195 AATGAATCTGGACACTGGCACTTAGGCCTTTT-ATATATTAATACTTGTTTTATGACACAAAGAG
41015769 CCTATTGGT-CATGTGGTAGGT
259 CCTATTGGTCCA-GTGGTAGGT
41015790 GGCGTGTGAG
Statistics
Matches: 9458, Mismatches: 1158, Indels: 358
0.86 0.11 0.03
Matches are distributed among these distances:
590 449 0.05
591 69 0.01
595 3 0.00
596 2 0.00
600 1 0.00
605 80 0.01
606 75 0.01
607 383 0.04
608 2 0.00
609 1 0.00
611 2 0.00
612 3 0.00
615 3 0.00
616 723 0.08
617 2329 0.25
618 3566 0.38
619 687 0.07
620 3 0.00
621 4 0.00
622 2 0.00
623 3 0.00
625 1 0.00
626 34 0.00
627 79 0.01
628 406 0.04
629 43 0.00
630 2 0.00
634 1 0.00
635 2 0.00
636 9 0.00
637 5 0.00
638 1 0.00
643 1 0.00
644 4 0.00
645 9 0.00
646 1 0.00
647 1 0.00
651 2 0.00
653 1 0.00
662 1 0.00
663 290 0.03
664 175 0.02
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.32
Consensus pattern (618 bp):
GTAAATTTCGAGGCTGAAATTTTGTTAAATGGGGTAGAGTTGTAACGCCCCAAAATTTAAGTCTC
TAATTTTTGCATGTTTTGACACAAATTGCTTGTTTGCTTTAATGGCTAAGTGATTTGGGTGTGTG
TGGGAGTGTTTGAGAAGCCTGGGTTCAAGTCTTGGCCTTGGCACAATTTTTAGTTTTTCTCTTAA
ATGAATCTGGACACTGGCACTTAGGCCTTTTATATATTAATACTTGTTTTATGACACAAAGAGCC
TATTGGTCCAGTGGTAGGTTCATTGGGCCTTACCGTGTACTGCAACGTGTGGGACCGATCGCTTA
TAAACTTGAGTTGCCTCTGAAATTAGACCAGATTCATGATGTGTTTCACGTCTCCATGCTAAGGC
GTTATCGCTCTGATCCCACTCACATAGTACCAGTTGAAGAGATTGAGGTTAGGCCAGATCTGACC
TTCGAGGAGAAGCCAGTGCAGATTTTGTACCGTGAGGTTAAGTTACTGAGGAAGAAATCTATTCC
ATTAGTCAAAGTGCTTTGGCGTAATCACAGTTCAGAAGAAGCCACGTGGGAACCCGAAGAGGCGA
TGCGACAGCAATACCCTCATCTTTTCTGACCAG
Found at i:41016972 original size:28 final size:27
Alignment explanation
Indices: 41016932--41017003 Score: 92
Period size: 27 Copynumber: 2.6 Consensus size: 27
41016922 AATCATGGGC
* *
41016932 AAATGACTGAATTACCGCT-AGAGTGGTA
1 AAATGACCGAATTACCCCTGA-AG-GGTA
*
41016960 AAATGACCAAATTACCCCTGAAGGGTA
1 AAATGACCGAATTACCCCTGAAGGGTA
41016987 AAATGACCGAATTACCC
1 AAATGACCGAATTACCC
41017004 TGTTATACCC
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
27 20 0.51
28 18 0.46
29 1 0.03
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.21
Consensus pattern (27 bp):
AAATGACCGAATTACCCCTGAAGGGTA
Found at i:41017219 original size:26 final size:26
Alignment explanation
Indices: 41017166--41017252 Score: 102
Period size: 26 Copynumber: 3.3 Consensus size: 26
41017156 TGTACTAGTG
* *
41017166 GCTTTGCCACATATACTATTACTGGCA
1 GCTTTGCTACAT-TACTATTACTAGCA
* *
41017193 GCTTTGCTGCATTACTGTTACTAGCA
1 GCTTTGCTACATTACTATTACTAGCA
* * *
41017219 GCTTTGCTACATCACTATTATTGGCA
1 GCTTTGCTACATTACTATTACTAGCA
41017245 GCTTTGCT
1 GCTTTGCT
41017253 GCGATATTGG
Statistics
Matches: 51, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
26 41 0.80
27 10 0.20
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.38
Consensus pattern (26 bp):
GCTTTGCTACATTACTATTACTAGCA
Found at i:41017238 original size:52 final size:52
Alignment explanation
Indices: 41017153--41017254 Score: 143
Period size: 52 Copynumber: 2.0 Consensus size: 52
41017143 AGGGGAAGTA
** *
41017153 TACTGTACTAGTGGCTTTGCCACATATACTATTACTGGCAGCTTTGCTGCAT
1 TACTGTACTAGCAGCTTTGCCACATACACTATTACTGGCAGCTTTGCTGCAT
* *
41017205 TACTGTTACTAGCAGCTTTGCTACAT-CACTATTATTGGCAGCTTTGCTGC
1 TACTG-TACTAGCAGCTTTGCCACATACACTATTACTGGCAGCTTTGCTGC
41017255 GATATTGGAG
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
52 27 0.61
53 17 0.39
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.37
Consensus pattern (52 bp):
TACTGTACTAGCAGCTTTGCCACATACACTATTACTGGCAGCTTTGCTGCAT
Found at i:41017406 original size:28 final size:28
Alignment explanation
Indices: 41017366--41017426 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
41017356 ATTGTATTGA
*
41017366 TTACTGTATTGGGCTAAGGCCCACACTG
1 TTACTGTAATGGGCTAAGGCCCACACTG
*
41017394 TTACTGTAATGGGCTAAGGCCTACACTG
1 TTACTGTAATGGGCTAAGGCCCACACTG
41017422 -TACTG
1 TTACTG
41017427 ATACTGTACA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 5 0.16
28 26 0.84
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.30
Consensus pattern (28 bp):
TTACTGTAATGGGCTAAGGCCCACACTG
Found at i:41020966 original size:12 final size:12
Alignment explanation
Indices: 41020949--41020978 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
41020939 AATTTCAAGC
41020949 GAACTCATTACT
1 GAACTCATTACT
41020961 GAACTCATTACT
1 GAACTCATTACT
41020973 G-ACTCA
1 GAACTCA
41020979 AGAATATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.28
12 13 0.72
ACGTcount: A:0.33, C:0.27, G:0.10, T:0.30
Consensus pattern (12 bp):
GAACTCATTACT
Found at i:41029525 original size:28 final size:28
Alignment explanation
Indices: 41029486--41029579 Score: 145
Period size: 28 Copynumber: 3.4 Consensus size: 28
41029476 TATATAGTAT
*
41029486 CAGT-ACAGTGTGGGCCTTAGCCCATTA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
41029513 CAGTAACAGTGTGGGCCTTAGCCCAATA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
* *
41029541 CAGTAGCAATGTGGGCCTTAGCCCAATA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
41029569 CAGTAATCAGT
1 CAGTAA-CAGT
41029580 ACAATGCAGT
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 4 0.07
28 53 0.88
29 3 0.05
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.23
Consensus pattern (28 bp):
CAGTAACAGTGTGGGCCTTAGCCCAATA
Found at i:41029706 original size:23 final size:25
Alignment explanation
Indices: 41029680--41029730 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
41029670 CCAACACACC
41029680 AATATCGCAGCAAAGCTGCCAGTAAT
1 AATA-CGCAGCAAAGCTGCCAGTAAT
*
41029706 AATCACGCAGCAAAGGTGCCAGTAA
1 AAT-ACGCAGCAAAGCTGCCAGTAA
41029731 CAGTATATGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.16
Consensus pattern (25 bp):
AATACGCAGCAAAGCTGCCAGTAAT
Found at i:41029959 original size:27 final size:27
Alignment explanation
Indices: 41029929--41030140 Score: 225
Period size: 27 Copynumber: 7.9 Consensus size: 27
41029919 TATAACGGTT
* *
41029929 ATTTTACCCTATAG-GGGTATTTCTAGC
1 ATTTTACCCT-TCGAGGGTATTTCTAGA
*
41029956 ATTTTACCCTTCGAAGGTATTTC-AGTA
1 ATTTTACCCTTCGAGGGTATTTCTAG-A
* * *
41029983 ATTTTACCCTTCGGGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCTAGA
* *
41030010 ATTTTACCCTTTGAGGGTATTT-TAGTC
1 ATTTTACCCTTCGAGGGTATTTCTAG-A
* *
41030037 ATTTTACCCTTAGAGGGTATTT-TAGTC
1 ATTTTACCCTTCGAGGGTATTTCTAG-A
* *
41030064 ATTTTACCCTTCGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCTAGA
* *
41030091 ATTTTACCCTTCGAGGGTATTTCAATA
1 ATTTTACCCTTCGAGGGTATTTCTAGA
*
41030118 ATTTTACCCTTTGAGGGTATTTC
1 ATTTTACCCTTCGAGGGTATTTC
41030141 GATCCCATTA
Statistics
Matches: 162, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
26 5 0.03
27 155 0.96
28 2 0.01
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.43
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCTAGA
Found at i:41030056 original size:81 final size:81
Alignment explanation
Indices: 41029929--41030140 Score: 293
Period size: 81 Copynumber: 2.6 Consensus size: 81
41029919 TATAACGGTT
* * *
41029929 ATTTTACCCTAT-AGGGGTATTTCTAG-CATTTTACCCTTCGAAGGTATTTCAGTAATTTTACCC
1 ATTTTACCCTTTGA-GGGTATTT-TAGTCATTTTACCCTTAGAGGGTATTTCAGTAATTTTACCC
*
41029992 TTCGGGGGTATTTCGATA
64 TTCGAGGGTATTTCGATA
* *
41030010 ATTTTACCCTTTGAGGGTATTTTAGTCATTTTACCCTTAGAGGGTATTTTAGTCATTTTACCCTT
1 ATTTTACCCTTTGAGGGTATTTTAGTCATTTTACCCTTAGAGGGTATTTCAGTAATTTTACCCTT
41030075 CGAGGGTATTTCGATA
66 CGAGGGTATTTCGATA
* * * * *
41030091 ATTTTACCCTTCGAGGGTATTTCAATAATTTTACCCTTTGAGGGTATTTC
1 ATTTTACCCTTTGAGGGTATTTTAGTCATTTTACCCTTAGAGGGTATTTC
41030141 GATCCCATTA
Statistics
Matches: 117, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
80 3 0.03
81 113 0.97
82 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.43
Consensus pattern (81 bp):
ATTTTACCCTTTGAGGGTATTTTAGTCATTTTACCCTTAGAGGGTATTTCAGTAATTTTACCCTT
CGAGGGTATTTCGATA
Found at i:41030143 original size:54 final size:55
Alignment explanation
Indices: 41029929--41030142 Score: 256
Period size: 54 Copynumber: 3.9 Consensus size: 55
41029919 TATAACGGTT
* ** *
41029929 ATTTTACCCTATAG-GGGTATTTCTAGCATTTTACCCTTCGAAGGTATTTC-AGTA
1 ATTTTACCCT-TAGAGGGTATTTCAATAATTTTACCCTTCGAGGGTATTTCGAGTA
* * * * * *
41029983 ATTTTACCCTTCGGGGGTATTTCGATAATTTTACCCTTTGAGGGTATTT-TAGTC
1 ATTTTACCCTTAGAGGGTATTTCAATAATTTTACCCTTCGAGGGTATTTCGAGTA
* * *
41030037 ATTTTACCCTTAGAGGGTATTTTAGTCATTTTACCCTTCGAGGGTATTTCGA-TA
1 ATTTTACCCTTAGAGGGTATTTCAATAATTTTACCCTTCGAGGGTATTTCGAGTA
* *
41030091 ATTTTACCCTTCGAGGGTATTTCAATAATTTTACCCTTTGAGGGTATTTCGA
1 ATTTTACCCTTAGAGGGTATTTCAATAATTTTACCCTTCGAGGGTATTTCGA
41030143 TCCCATTATG
Statistics
Matches: 136, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
53 2 0.01
54 133 0.98
55 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.43
Consensus pattern (55 bp):
ATTTTACCCTTAGAGGGTATTTCAATAATTTTACCCTTCGAGGGTATTTCGAGTA
Found at i:41032860 original size:27 final size:27
Alignment explanation
Indices: 41032829--41032916 Score: 124
Period size: 27 Copynumber: 3.3 Consensus size: 27
41032819 CCAATATTTA
* *
41032829 TAAAATGACCGTAATGACCCTTTAGGG
1 TAAAATGACCGTAATGCCCCTGTAGGG
* *
41032856 TAAAATAACTGTAATGCCCCTGTAGGG
1 TAAAATGACCGTAATGCCCCTGTAGGG
*
41032883 TAAAATGACCGTGATGCCCCTGTA-GG
1 TAAAATGACCGTAATGCCCCTGTAGGG
41032909 TAAAATGA
1 TAAAATGA
41032917 TTGTAATACC
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 10 0.19
27 44 0.81
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (27 bp):
TAAAATGACCGTAATGCCCCTGTAGGG
Found at i:41032946 original size:53 final size:54
Alignment explanation
Indices: 41032829--41032931 Score: 136
Period size: 53 Copynumber: 1.9 Consensus size: 54
41032819 CCAATATTTA
* *
41032829 TAAAATGACCGTAATGACCCTTTAGGGTAAAATAACTGTAATGCCCCTGTAGGG
1 TAAAATGACCGTAATGACCCTGTAGGGTAAAATAACTGTAATACCCCTGTAGGG
* * * * *
41032883 TAAAATGACCGTGATGCCCCTGTA-GGTAAAATGATTGTAATACCTCTGT
1 TAAAATGACCGTAATGACCCTGTAGGGTAAAATAACTGTAATACCCCTGT
41032932 TAGGTGAATT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 21 0.50
54 21 0.50
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.28
Consensus pattern (54 bp):
TAAAATGACCGTAATGACCCTGTAGGGTAAAATAACTGTAATACCCCTGTAGGG
Found at i:41033079 original size:24 final size:24
Alignment explanation
Indices: 41032989--41033107 Score: 114
Period size: 24 Copynumber: 5.0 Consensus size: 24
41032979 CCCCTCGAGG
* * *
41032989 TTAAATGATTGATTTATCTGTGAT
1 TTAAATGACTGATTTGTCTATGAT
* * * *
41033013 GTAAGTGATTGATTTGTCCGA-GAT
1 TTAAATGACTGATTTGT-CTATGAT
* *
41033037 GTAAATGACTAATTTGTCTATGAT
1 TTAAATGACTGATTTGTCTATGAT
41033061 TTAAATGACTGATTTGTCTATGAT
1 TTAAATGACTGATTTGTCTATGAT
***
41033085 TGGTATGACTGATTTGTCTATGA
1 TTAAATGACTGATTTGTCTATGA
41033108 AAATTATGAC
Statistics
Matches: 79, Mismatches: 14, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
23 2 0.03
24 76 0.96
25 1 0.01
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.44
Consensus pattern (24 bp):
TTAAATGACTGATTTGTCTATGAT
Found at i:41033115 original size:24 final size:24
Alignment explanation
Indices: 41033065--41033122 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
41033055 TATGATTTAA
***
41033065 ATGACTGATTTGTCTATGATTGGT
1 ATGACTGATTTGTCTATGAAAAGT
*
41033089 ATGACTGATTTGTCTATGAAAATT
1 ATGACTGATTTGTCTATGAAAAGT
41033113 ATGACTGATT
1 ATGACTGATT
41033123 CTGAGCATGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.43
Consensus pattern (24 bp):
ATGACTGATTTGTCTATGAAAAGT
Found at i:41034872 original size:32 final size:32
Alignment explanation
Indices: 41034834--41034896 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
41034824 TGCTGCGATG
*
41034834 CTACTGATGGCTTTGTGCCGATCATATTACTA
1 CTACTGATGGCTTTGTGCCAATCATATTACTA
41034866 CTACTGATGGCTTTGTGCCAATCATATTACT
1 CTACTGATGGCTTTGTGCCAATCATATTACT
41034897 GTACTTATGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.38
Consensus pattern (32 bp):
CTACTGATGGCTTTGTGCCAATCATATTACTA
Found at i:41034926 original size:22 final size:21
Alignment explanation
Indices: 41034901--41034952 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
41034891 ATTACTGTAC
*
41034901 TTATGGCTAGTAG-TCATTCTGT
1 TTATGGCTA-TAGCT-ATCCTGT
*
41034923 TTATAGCTTATAGCTATCCTGT
1 TTATGGC-TATAGCTATCCTGT
41034945 TTATGGCT
1 TTATGGCT
41034953 CTTAGCCATT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
21 1 0.04
22 21 0.84
23 3 0.12
ACGTcount: A:0.19, C:0.15, G:0.19, T:0.46
Consensus pattern (21 bp):
TTATGGCTATAGCTATCCTGT
Found at i:41040093 original size:20 final size:20
Alignment explanation
Indices: 41040070--41040123 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
41040060 AGTTTTTCCC
*
41040070 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
41040090 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
41040110 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
41040124 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:41040105 original size:30 final size:30
Alignment explanation
Indices: 41040070--41040143 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
41040060 AGTTTTTCCC
41040070 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
41040100 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
41040130 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
41040144 TGGCTTTAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:41040133 original size:20 final size:20
Alignment explanation
Indices: 41040070--41040134 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
41040060 AGTTTTTCCC
* * * *
41040070 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
41040090 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
41040109 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
41040130 AGCTC
1 AGCTC
41040135 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:41044206 original size:40 final size:40
Alignment explanation
Indices: 41044125--41044317 Score: 230
Period size: 40 Copynumber: 4.8 Consensus size: 40
41044115 GGCCCATTTT
* **
41044125 TATTTTAAAAAT-TTTAAAAAATTAAAAAAAGTATTTTAAAAA
1 TATTTTAAAAATATTT-TAAAATTAAAAAAA--ATTAAAAAAA
* *
41044167 TATTTTTAAAATGTTTTAAAATTAAAAAAAATTAAAAAAAA
1 TATTTTAAAAATATTTTAAAATTAAAAAAAATT-AAAAAAA
41044208 GTATTTT-AAAATATTTTAAAATT-AAAAAAATTAAAAAAA
1 -TATTTTAAAAATATTTTAAAATTAAAAAAAATTAAAAAAA
* *
41044247 GTATTTTAAAAATATTTTAAAATTTAAAAAAATTAAAAAAG
1 -TATTTTAAAAATATTTTAAAATTAAAAAAAATTAAAAAAA
* *
41044288 TATGTAAAAAATATTTTAAAATTAAAAAAA
1 TATTTTAAAAATATTTTAAAATTAAAAAAA
41044318 TAAATATATT
Statistics
Matches: 137, Mismatches: 9, Indels: 12
0.87 0.06 0.08
Matches are distributed among these distances:
39 14 0.10
40 55 0.40
41 35 0.26
42 30 0.22
43 3 0.02
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (40 bp):
TATTTTAAAAATATTTTAAAATTAAAAAAAATTAAAAAAA
Found at i:41044309 original size:10 final size:11
Alignment explanation
Indices: 41044125--41044268 Score: 62
Period size: 11 Copynumber: 13.9 Consensus size: 11
41044115 GGCCCATTTT
41044125 TATTTT-AAAA
1 TATTTTAAAAA
41044135 -ATTTTAAAAA
1 TATTTTAAAAA
**
41044145 -ATTAAAAAAA
1 TATTTTAAAAA
41044155 GTATTTTAAAAA
1 -TATTTTAAAAA
*
41044167 TATTTTTAAAA
1 TATTTTAAAAA
*
41044178 TGTTTT--AAA
1 TATTTTAAAAA
*
41044187 -A-TTAAAAAA
1 TATTTTAAAAA
* **
41044196 AATTAAAAAAAA
1 TATT-TTAAAAA
41044208 GTATTTT-AAAA
1 -TATTTTAAAAA
41044219 TATTTT--AAA
1 TATTTTAAAAA
41044228 -A--TTAAAAA
1 TATTTTAAAAA
* **
41044236 AATTAAAAAAA
1 TATTTTAAAAA
41044247 GTATTTTAAAAA
1 -TATTTTAAAAA
41044259 TATTTTAAAA
1 TATTTTAAAA
41044269 TTTAAAAAAA
Statistics
Matches: 102, Mismatches: 17, Indels: 29
0.69 0.11 0.20
Matches are distributed among these distances:
6 2 0.02
7 2 0.02
8 4 0.04
9 15 0.15
10 19 0.19
11 35 0.34
12 22 0.22
13 3 0.03
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:41045241 original size:40 final size:39
Alignment explanation
Indices: 41045185--41045324 Score: 158
Period size: 40 Copynumber: 3.6 Consensus size: 39
41045175 TAAAGTGCAT
* *
41045185 TCAA-GGTACCGAAGTACAAACAATGGCACATATGTATAC
1 TCAAGGGTACCGAAGTACAAACAA-GGCACATATGTACAA
* * * *
41045224 TCAAGGATACCGAAGTACAATCAGGGGCACATATGTGCAA
1 TCAAGGGTACCGAAGTACAAACA-AGGCACATATGTACAA
* *
41045264 TCAGGGGTATCGAAGTACAAACAA-GCACATATGTACAA
1 TCAAGGGTACCGAAGTACAAACAAGGCACATATGTACAA
* *
41045302 TCAGGGGTACCAAAGTACAAACA
1 TCAAGGGTACCGAAGTACAAACA
41045325 GGGACATGTA
Statistics
Matches: 85, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
38 34 0.40
39 4 0.05
40 47 0.55
ACGTcount: A:0.41, C:0.20, G:0.21, T:0.18
Consensus pattern (39 bp):
TCAAGGGTACCGAAGTACAAACAAGGCACATATGTACAA
Found at i:41045318 original size:78 final size:79
Alignment explanation
Indices: 41045189--41045344 Score: 206
Period size: 78 Copynumber: 2.0 Consensus size: 79
41045179 GTGCATTCAA
* * * * *
41045189 GGTACCGAAGTACAAACAATGGCACATATGTATACTCAAGGATACCGAAGTACAATCAGGGGCAC
1 GGTACCGAAGTACAAACAA-GGCACATATGTACAATCAAGGATACCAAAGTACAAACAGGGACAC
41045254 ATATGTGCAATCAGG
65 ATATGTGCAATCAGG
* * * **
41045269 GGTATCGAAGTACAAACAA-GCACATATGTACAATCAGGGGTACCAAAGTACAAACAGGGACATG
1 GGTACCGAAGTACAAACAAGGCACATATGTACAATCAAGGATACCAAAGTACAAACAGGGACACA
41045333 TATGTGCAATCA
66 TATGTGCAATCA
41045345 TCAATAATTA
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
78 48 0.73
80 18 0.27
ACGTcount: A:0.39, C:0.19, G:0.23, T:0.19
Consensus pattern (79 bp):
GGTACCGAAGTACAAACAAGGCACATATGTACAATCAAGGATACCAAAGTACAAACAGGGACACA
TATGTGCAATCAGG
Found at i:41048575 original size:24 final size:24
Alignment explanation
Indices: 41048548--41048593 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
41048538 ACCATAACGC
41048548 TATTAAGTGACTTGGCAACAACAT
1 TATTAAGTGACTTGGCAACAACAT
* * *
41048572 TATTGAGTGGCTTGGCCACAAC
1 TATTAAGTGACTTGGCAACAAC
41048594 GTGGTGTGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (24 bp):
TATTAAGTGACTTGGCAACAACAT
Found at i:41052885 original size:50 final size:50
Alignment explanation
Indices: 41052830--41052972 Score: 187
Period size: 50 Copynumber: 2.9 Consensus size: 50
41052820 TATTAAGGTT
*
41052830 ATGAGAGCTCCCATGTAAGACCATGTCTGGGACATGTCATTGGCACCGAG
1 ATGAGAGCTCCCATGTAAGACCATGTCTGGGACATGACATTGGCACCGAG
* * * * * *
41052880 ATGAGAGGTCCCCTGTAAGACCAAGTCTGGGACATGGCATGGGCACCGAT
1 ATGAGAGCTCCCATGTAAGACCATGTCTGGGACATGACATTGGCACCGAG
* * * *
41052930 ATTAGAACTCCCATGTAAGACCATATCTGGGATATGACATTGG
1 ATGAGAGCTCCCATGTAAGACCATGTCTGGGACATGACATTGG
41052973 AAGTACAGTA
Statistics
Matches: 78, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 78 1.00
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.22
Consensus pattern (50 bp):
ATGAGAGCTCCCATGTAAGACCATGTCTGGGACATGACATTGGCACCGAG
Found at i:41053256 original size:20 final size:20
Alignment explanation
Indices: 41053231--41053269 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
41053221 TGATTTATTT
41053231 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
41053251 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
41053270 GAAGAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:41057564 original size:41 final size:41
Alignment explanation
Indices: 41057468--41057567 Score: 128
Period size: 41 Copynumber: 2.4 Consensus size: 41
41057458 TGCGGATACT
* * * *
41057468 CCACAGCTCATATAAGCAGCATTATGTAGCTACTTTCCAAC
1 CCACAGCTCATGTGAGCAGCATCATGTAGCTACATTCCAAC
* * *
41057509 CCACAGCCCGTGTGAGCAGCATCATGTGGCTACATTCCAAC
1 CCACAGCTCATGTGAGCAGCATCATGTAGCTACATTCCAAC
*
41057550 CCACAACTCATGTGAGCA
1 CCACAGCTCATGTGAGCA
41057568 TACCGATTTA
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (41 bp):
CCACAGCTCATGTGAGCAGCATCATGTAGCTACATTCCAAC
Found at i:41057607 original size:25 final size:25
Alignment explanation
Indices: 41057556--41057645 Score: 85
Period size: 25 Copynumber: 3.6 Consensus size: 25
41057546 CAACCCACAA
* * *
41057556 CTCATGTGAGCATACCGATTTATAG
1 CTCATGTGAGCATACTGATCTACAG
*
41057581 CTCATGAGAGCATACTGATCTACAG
1 CTCATGTGAGCATACTGATCTACAG
*
41057606 CTCGA-GTGAGCATACTAAT-TCACAG
1 CTC-ATGTGAGCATACTGATCT-ACAG
* *
41057631 CTCGTATGAGCATAC
1 CTCATGTGAGCATAC
41057646 ATGTACATGA
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
24 1 0.02
25 52 0.96
26 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (25 bp):
CTCATGTGAGCATACTGATCTACAG
Found at i:41068903 original size:20 final size:20
Alignment explanation
Indices: 41068880--41068939 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 20
41068870 AGTTTATCTG
41068880 CATTACTGGTGGCTTGTCCA
1 CATTACTGGTGGCTTGTCCA
*** **
41068900 CATTACTGACAGCTTGTCTG
1 CATTACTGGTGGCTTGTCCA
* *
41068920 CAATACTAGTGGCTTGTCCA
1 CATTACTGGTGGCTTGTCCA
41068940 GTTTTATGGC
Statistics
Matches: 28, Mismatches: 12, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (20 bp):
CATTACTGGTGGCTTGTCCA
Found at i:41069357 original size:21 final size:20
Alignment explanation
Indices: 41069320--41069358 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
41069310 AGCTAAATTT
*
41069320 TAATAATTTTTCTTGGACCA
1 TAATAATTTTTATTGGACCA
41069340 TAATAATTTTTATATGGAC
1 TAATAATTTTTAT-TGGAC
41069359 TGTGGCATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.46
Consensus pattern (20 bp):
TAATAATTTTTATTGGACCA
Found at i:41074571 original size:30 final size:30
Alignment explanation
Indices: 41074510--41074573 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
41074500 CACACGGTCA
41074510 TGTGAACCACCCATGTGCGACACACGACCG
1 TGTGAACCACCCATGTGCGACACACGACCG
* *
41074540 TGTGAACCACCCATGTGCGACACATGCCCG
1 TGTGAACCACCCATGTGCGACACACGACCG
41074570 TGTG
1 TGTG
41074574 GCCACCCGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.23, C:0.34, G:0.25, T:0.17
Consensus pattern (30 bp):
TGTGAACCACCCATGTGCGACACACGACCG
Found at i:41076451 original size:28 final size:26
Alignment explanation
Indices: 41076392--41076451 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 26
41076382 TTCAAGGTTC
41076392 TTTTTAAATTTTATTTTATTTTTATT
1 TTTTTAAATTTTATTTTATTTTTATT
*
41076418 TCTTTTAATTTTCTATTTTAACTTTTT-TT
1 T-TTTTAAATTT-TATTTT-A-TTTTTATT
41076447 TTTTT
1 TTTTT
41076452 CAATAGATTC
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
26 1 0.03
27 9 0.31
28 10 0.34
29 4 0.14
30 5 0.17
ACGTcount: A:0.18, C:0.05, G:0.00, T:0.77
Consensus pattern (26 bp):
TTTTTAAATTTTATTTTATTTTTATT
Found at i:41084565 original size:19 final size:19
Alignment explanation
Indices: 41084537--41084574 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
41084527 GGGATATAAT
*
41084537 TTTAGGTAGATAAATCTTA
1 TTTAGATAGATAAATCTTA
41084556 TTTAGATAGATAAATCTTA
1 TTTAGATAGATAAATCTTA
41084575 GAATAAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.05, G:0.13, T:0.42
Consensus pattern (19 bp):
TTTAGATAGATAAATCTTA
Found at i:41084644 original size:41 final size:41
Alignment explanation
Indices: 41084612--41084693 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
41084602 ATATTTTATT
*
41084612 TTATCTTTTAGTAATTTATTAGAATAAGGGAATTATTTTCC
1 TTATCGTTTAGTAATTTATTAGAATAAGGGAATTATTTTCC
* *
41084653 TTATGGTTTAGTAGTTTATTAGAATAAGGGAATTATTTTCC
1 TTATCGTTTAGTAATTTATTAGAATAAGGGAATTATTTTCC
41084694 CAATTAGGTT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.30, C:0.06, G:0.16, T:0.48
Consensus pattern (41 bp):
TTATCGTTTAGTAATTTATTAGAATAAGGGAATTATTTTCC
Found at i:41096871 original size:18 final size:20
Alignment explanation
Indices: 41096848--41096885 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
41096838 ATAAAAATAT
41096848 CAAATA-TATAT-AAATTCA
1 CAAATATTATATAAAATTCA
41096866 CAAATATTATATAAAATTCA
1 CAAATATTATATAAAATTCA
41096886 AGACATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
19 5 0.28
20 7 0.39
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (20 bp):
CAAATATTATATAAAATTCA
Found at i:41103530 original size:90 final size:89
Alignment explanation
Indices: 41103379--41103568 Score: 274
Period size: 90 Copynumber: 2.1 Consensus size: 89
41103369 CTTAAGGGTG
* *
41103379 TAAAAA-GCCCTCAAAAATTTTCAAAAAACGCAATTAAGCCCCTGCTTTTTTTTGCACTCAATTG
1 TAAAAAGGCCCTCAAAAATTTTCAAAAAAAGCAATTAAGCCCCTGCTTTTTTCTGCACTCAATTG
* *
41103443 GGTACTTGAACTTTCAAAATGCAT
66 GGTACTTGAACTATCAAAAAGCAT
* ** *
41103467 TAAAAAGGCCCTCAGACTTTTTCAAAAAAAAGCAATTAAGCCCCTGCTTTTTTCTGCATTCAATT
1 TAAAAAGGCCCTCAAAAATTTTC-AAAAAAAGCAATTAAGCCCCTGCTTTTTTCTGCACTCAATT
41103532 GGGTACTTGAACTATCAAAAAGCAT
65 GGGTACTTGAACTATCAAAAAGCAT
* *
41103557 CAAAAAGACCCT
1 TAAAAAGGCCCT
41103569 TTAACCATTA
Statistics
Matches: 90, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
88 6 0.07
89 13 0.14
90 71 0.79
ACGTcount: A:0.36, C:0.22, G:0.12, T:0.29
Consensus pattern (89 bp):
TAAAAAGGCCCTCAAAAATTTTCAAAAAAAGCAATTAAGCCCCTGCTTTTTTCTGCACTCAATTG
GGTACTTGAACTATCAAAAAGCAT
Found at i:41103686 original size:19 final size:19
Alignment explanation
Indices: 41103664--41103706 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
41103654 TTAAAATCAA
41103664 TAAAAGTT-ATAAAAATTAT
1 TAAAAGTTAATAAAAA-TAT
**
41103683 TAAATTTTAATAAAAATAT
1 TAAAAGTTAATAAAAATAT
41103702 TAAAA
1 TAAAA
41103707 ATTAGAAAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (19 bp):
TAAAAGTTAATAAAAATAT
Found at i:41111358 original size:27 final size:28
Alignment explanation
Indices: 41111328--41111386 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 28
41111318 TGGAAGTTGT
* *
41111328 GTTCTCCAGTTTGTTTGGCAAGCT-AGG
1 GTTCACCAGTTTGTATGGCAAGCTAAGG
*
41111355 GTTCACTAGTTTGTATGGCAAGCTAAGG
1 GTTCACCAGTTTGTATGGCAAGCTAAGG
41111383 GTTC
1 GTTC
41111387 GTTAATTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 21 0.75
28 7 0.25
ACGTcount: A:0.19, C:0.17, G:0.29, T:0.36
Consensus pattern (28 bp):
GTTCACCAGTTTGTATGGCAAGCTAAGG
Found at i:41115866 original size:42 final size:42
Alignment explanation
Indices: 41115778--41115913 Score: 121
Period size: 42 Copynumber: 3.2 Consensus size: 42
41115768 ATCATATACA
* * * *
41115778 GAAGCACATAAGTGCTAAACGAAAACCCATAAGGTTTGAATG
1 GAAGCTCATAAGAGCTAAACGAAAACCCATAAGGGTTAAATG
* * * *
41115820 GAAGCTTATAAGAGCTGAACGGAAACCTATAAGGGTTAAACT-
1 GAAGCTCATAAGAGCTAAACGAAAACCCATAAGGGTTAAA-TG
* * * * * *
41115862 GAAGCTCAAAAGAGCTAAACGAAAGCCCCTTATGGTTAAACG
1 GAAGCTCATAAGAGCTAAACGAAAACCCATAAGGGTTAAATG
*
41115904 GAAACTCATA
1 GAAGCTCATA
41115914 TGAGTTAATT
Statistics
Matches: 72, Mismatches: 20, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
42 71 0.99
43 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.21, T:0.19
Consensus pattern (42 bp):
GAAGCTCATAAGAGCTAAACGAAAACCCATAAGGGTTAAATG
Found at i:41122666 original size:24 final size:25
Alignment explanation
Indices: 41122631--41122681 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 25
41122621 TTCCTTTAAA
41122631 TTATCACTGCATACTTA-TCTT-AGT
1 TTATCACTGCAT-CTTATTCTTCAGT
41122655 TTATCA-TAGCATCTTATTCTTCAGT
1 TTATCACT-GCATCTTATTCTTCAGT
41122680 TT
1 TT
41122682 TGTCATTACA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
23 5 0.21
24 14 0.58
25 5 0.21
ACGTcount: A:0.24, C:0.20, G:0.08, T:0.49
Consensus pattern (25 bp):
TTATCACTGCATCTTATTCTTCAGT
Found at i:41128422 original size:6 final size:6
Alignment explanation
Indices: 41128411--41128437 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
41128401 AATGGATCAT
41128411 TTTCCA TTTCCA TTTCCA TTTCCA TTT
1 TTTCCA TTTCCA TTTCCA TTTCCA TTT
41128438 TTGGAAACCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.30, G:0.00, T:0.56
Consensus pattern (6 bp):
TTTCCA
Found at i:41131639 original size:41 final size:41
Alignment explanation
Indices: 41131594--41131677 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
41131584 AGTAAGCCAT
41131594 TTTCGCATGGCTCATATTCACATATCCCAAAATTAAACATA
1 TTTCGCATGGCTCATATTCACATATCCCAAAATTAAACATA
41131635 TTTCGCATGGCTCATATTCACATATCCCAAAATTAAACATA
1 TTTCGCATGGCTCATATTCACATATCCCAAAATTAAACATA
41131676 TT
1 TT
41131678 AACTAGACTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (41 bp):
TTTCGCATGGCTCATATTCACATATCCCAAAATTAAACATA
Found at i:41132035 original size:41 final size:41
Alignment explanation
Indices: 41131973--41132148 Score: 280
Period size: 41 Copynumber: 4.3 Consensus size: 41
41131963 AATTTAACAT
* *
41131973 ATTCAGATCACTGGCACTTAGCCTGCTAGGTTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* * *
41132014 ATTCATATCACCGGCATTTAGCCTACTAGGCTTATAACCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
*
41132055 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
* *
41132096 ATTCAAATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
1 ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
41132137 ATTCAGATCACC
1 ATTCAGATCACC
41132149 AATTCCAAAC
Statistics
Matches: 124, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 124 1.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (41 bp):
ATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTG
Found at i:41142701 original size:20 final size:19
Alignment explanation
Indices: 41142676--41142771 Score: 70
Period size: 20 Copynumber: 4.8 Consensus size: 19
41142666 AAATGAAGAA
41142676 GTGCCCCTGTTTGCACAACT
1 GTGCCCCTGTTTGCAC-ACT
* * **
41142696 GTGCCCCTGTATACACTTT
1 GTGCCCCTGTTTGCACACT
*
41142715 GGTGACCCTGTTTGCACTACT
1 -GTGCCCCTGTTTGCAC-ACT
41142736 GTGCCCCT-TTT-CACACTTT
1 GTGCCCCTGTTTGCACAC--T
*
41142755 GGTGTCCCTGTTTGCAC
1 -GTGCCCCTGTTTGCAC
41142772 GTCTATGCCT
Statistics
Matches: 58, Mismatches: 11, Indels: 12
0.72 0.14 0.15
Matches are distributed among these distances:
17 2 0.03
18 3 0.05
19 5 0.09
20 41 0.71
21 4 0.07
22 3 0.05
ACGTcount: A:0.12, C:0.32, G:0.20, T:0.35
Consensus pattern (19 bp):
GTGCCCCTGTTTGCACACT
Found at i:41142737 original size:40 final size:40
Alignment explanation
Indices: 41142680--41142771 Score: 141
Period size: 40 Copynumber: 2.3 Consensus size: 40
41142670 GAAGAAGTGC
41142680 CCCTGTTTGCACAACTGTGCCCCTGTAT-ACACTTTGGTGA
1 CCCTGTTTGCACAACTGTGCCCCT-TATCACACTTTGGTGA
* * *
41142720 CCCTGTTTGCACTACTGTGCCCCTTTTCACACTTTGGTGT
1 CCCTGTTTGCACAACTGTGCCCCTTATCACACTTTGGTGA
41142760 CCCTGTTTGCAC
1 CCCTGTTTGCAC
41142772 GTCTATGCCT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
39 2 0.04
40 46 0.96
ACGTcount: A:0.13, C:0.33, G:0.18, T:0.36
Consensus pattern (40 bp):
CCCTGTTTGCACAACTGTGCCCCTTATCACACTTTGGTGA
Found at i:41147524 original size:40 final size:40
Alignment explanation
Indices: 41147480--41147564 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
41147470 ACGACTGTGC
** * *
41147480 CCCTGTTCGCACTTCAATGCCCCTGTATACATTTCGGTGT
1 CCCTGTTCGCACGGCAATGCCCCTGTATACACTTCAGTGT
* ** *
41147520 CCCTGTTTGCACGGCTGTGCCCCTGTTTACACTTCAGTGT
1 CCCTGTTCGCACGGCAATGCCCCTGTATACACTTCAGTGT
41147560 CCCTG
1 CCCTG
41147565 GCTGCACATA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.12, C:0.34, G:0.20, T:0.34
Consensus pattern (40 bp):
CCCTGTTCGCACGGCAATGCCCCTGTATACACTTCAGTGT
Found at i:41147563 original size:20 final size:20
Alignment explanation
Indices: 41147476--41147564 Score: 70
Period size: 20 Copynumber: 4.5 Consensus size: 20
41147466 TTGCACGACT
**
41147476 GTGCCCCTGTTCGCACTTCA
1 GTGCCCCTGTTTACACTTCA
* * * *
41147496 ATGCCCCTGTATACATTTCG
1 GTGCCCCTGTTTACACTTCA
* * ** *
41147516 GTGTCCCTGTTTGCACGGCT
1 GTGCCCCTGTTTACACTTCA
41147536 GTGCCCCTGTTTACACTTCA
1 GTGCCCCTGTTTACACTTCA
*
41147556 GTGTCCCTG
1 GTGCCCCTG
41147565 GCTGCACATA
Statistics
Matches: 49, Mismatches: 20, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.11, C:0.34, G:0.21, T:0.34
Consensus pattern (20 bp):
GTGCCCCTGTTTACACTTCA
Found at i:41147564 original size:60 final size:60
Alignment explanation
Indices: 41147400--41147564 Score: 213
Period size: 60 Copynumber: 2.8 Consensus size: 60
41147390 GAAGAAGTGC
* ** * *
41147400 CCCTATTTGCACGACTGCGCCCCTGTTCGCACTTTGGTGCCCCTATATAGACTTCGATGT
1 CCCTATTTGCACGACTGTGCCCCTGTTCGCACTTCAGTGCCCCTGTATACACTTCGATGT
* * *
41147460 CCCTATTTGCACGACTGTGCCCCTGTTCGCACTTCAATGCCCCTGTATACATTTCGGTGT
1 CCCTATTTGCACGACTGTGCCCCTGTTCGCACTTCAGTGCCCCTGTATACACTTCGATGT
* * ** *
41147520 CCCTGTTTGCACGGCTGTGCCCCTGTTTACACTTCAGTGTCCCTG
1 CCCTATTTGCACGACTGTGCCCCTGTTCGCACTTCAGTGCCCCTG
41147565 GCTGCACATA
Statistics
Matches: 91, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
60 91 1.00
ACGTcount: A:0.13, C:0.34, G:0.20, T:0.33
Consensus pattern (60 bp):
CCCTATTTGCACGACTGTGCCCCTGTTCGCACTTCAGTGCCCCTGTATACACTTCGATGT
Found at i:41147571 original size:40 final size:40
Alignment explanation
Indices: 41147497--41147587 Score: 110
Period size: 40 Copynumber: 2.3 Consensus size: 40
41147487 CGCACTTCAA
* * * ** * *
41147497 TGCCCCTGTATACATTTCGGTGTCCCTGTTTGCACGGCTG
1 TGCCCCTGTTTACACTTCAGTGTCCCTGGCTGCACAGATG
*
41147537 TGCCCCTGTTTACACTTCAGTGTCCCTGGCTGCACATATG
1 TGCCCCTGTTTACACTTCAGTGTCCCTGGCTGCACAGATG
41147577 TGCCCCTGTTT
1 TGCCCCTGTTT
41147588 TGCATCTATG
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.11, C:0.32, G:0.22, T:0.35
Consensus pattern (40 bp):
TGCCCCTGTTTACACTTCAGTGTCCCTGGCTGCACAGATG
Found at i:41152856 original size:62 final size:60
Alignment explanation
Indices: 41152744--41152858 Score: 151
Period size: 62 Copynumber: 1.9 Consensus size: 60
41152734 CCAAAAATAA
* * * * *
41152744 TATTATTTTAATAATTTAGTATTAAATTTAATTTCATGTTTATCTTATAAATAAACATTC
1 TATTATTTTAATAATTTAATATTAAATTTAATATAATATTTATCTGATAAATAAACATTC
41152804 TATTATTTTAATAAGATTTAATATTAAA-TTAATATAATATTTATCCTGATAAATA
1 TATTATTTTAAT-A-ATTTAATATTAAATTTAATATAATATTTAT-CTGATAAATA
41152859 TTATATTAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
60 12 0.26
61 14 0.30
62 21 0.45
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (60 bp):
TATTATTTTAATAATTTAATATTAAATTTAATATAATATTTATCTGATAAATAAACATTC
Found at i:41155365 original size:9 final size:9
Alignment explanation
Indices: 41155343--41155392 Score: 55
Period size: 9 Copynumber: 5.6 Consensus size: 9
41155333 TTTTGGTTAA
41155343 AAATTAACC
1 AAATTAACC
* *
41155352 GAATTAGCC
1 AAATTAACC
*
41155361 AAATTAACT
1 AAATTAACC
*
41155370 GAATTAACC
1 AAATTAACC
*
41155379 GAATTAACC
1 AAATTAACC
41155388 AAATT
1 AAATT
41155393 GAATCACTAC
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.48, C:0.18, G:0.08, T:0.26
Consensus pattern (9 bp):
AAATTAACC
Found at i:41155366 original size:18 final size:18
Alignment explanation
Indices: 41155343--41155392 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
41155333 TTTTGGTTAA
*
41155343 AAATTAACCGAATTAGCC
1 AAATTAACCGAATTAACC
*
41155361 AAATTAACTGAATTAACC
1 AAATTAACCGAATTAACC
* *
41155379 GAATTAACCAAATT
1 AAATTAACCGAATT
41155393 GAATCACTAC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.48, C:0.18, G:0.08, T:0.26
Consensus pattern (18 bp):
AAATTAACCGAATTAACC
Found at i:41161154 original size:13 final size:13
Alignment explanation
Indices: 41161136--41161161 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
41161126 GCTTCTTCTC
41161136 CTTTTCTTTCTTT
1 CTTTTCTTTCTTT
41161149 CTTTTCTTTCTTT
1 CTTTTCTTTCTTT
41161162 AATGTTTGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (13 bp):
CTTTTCTTTCTTT
Found at i:41167206 original size:51 final size:51
Alignment explanation
Indices: 41167063--41167245 Score: 176
Period size: 51 Copynumber: 3.6 Consensus size: 51
41167053 ATTTGGTAGG
* *
41167063 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCA-AAATGATAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATATGATAGA
* * * * * *
41167113 TCGCATGTGTAGTACTATGTCCAGGCTACTATGCGTACCAGATA-GCTTCA-A
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATATG-AT-AGA
* * ** *
41167164 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCAGATGAAAAT-GG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAT-ATGATAGA
* *
41167215 TCACATGTATAGTACTATGTGCAGGCTACTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTA
41167246 TGTGAACCGA
Statistics
Matches: 106, Mismatches: 21, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
50 36 0.34
51 67 0.63
52 3 0.03
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (51 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATATGATAGA
Found at i:41180175 original size:68 final size:71
Alignment explanation
Indices: 41180079--41180208 Score: 185
Period size: 68 Copynumber: 1.9 Consensus size: 71
41180069 TTTTAATAAT
* *
41180079 TTAATATTAAATTTAATTTAATACTTATCT-TAATAATATTTT-ATTA-ATTTAATATTAAAGTG
1 TTAATATTAAATTAAATTTAATACTTATCTATAATAATATTTTAATAAGATTTAATATTAAAGTG
41180141 ATTATC
66 ATTATC
** * *
41180147 TTAATATTAAATTAAATTTAATGTTTATCTATTATATTATTTTAATAAGATTTAATATTAAA
1 TTAATATTAAATTAAATTTAATACTTATCTATAATAATATTTTAATAAGATTTAATATTAAA
41180209 TTTAATCCAA
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
68 27 0.51
69 10 0.19
70 3 0.06
71 13 0.25
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (71 bp):
TTAATATTAAATTAAATTTAATACTTATCTATAATAATATTTTAATAAGATTTAATATTAAAGTG
ATTATC
Found at i:41181066 original size:13 final size:13
Alignment explanation
Indices: 41181032--41181067 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
41181022 TTTGAGTCAG
41181032 AAGTGCTTTTGAA
1 AAGTGCTTTTGAA
* *
41181045 AATTACTTTTGAA
1 AAGTGCTTTTGAA
41181058 AAGTGCTTTT
1 AAGTGCTTTT
41181068 CAACCCAAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.31, C:0.08, G:0.17, T:0.44
Consensus pattern (13 bp):
AAGTGCTTTTGAA
Found at i:41181269 original size:19 final size:20
Alignment explanation
Indices: 41181247--41181296 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
41181237 TTTTTATTGG
*
41181247 ATATATTTTAT-TATTTAAA
1 ATATATTTTATATATTCAAA
*
41181266 ATATAGTTTATATATTCAAA
1 ATATATTTTATATATTCAAA
* *
41181286 TTAAATTTTAT
1 ATATATTTTAT
41181297 GAATAATTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 10 0.40
20 15 0.60
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (20 bp):
ATATATTTTATATATTCAAA
Found at i:41184185 original size:56 final size:50
Alignment explanation
Indices: 41183978--41184215 Score: 248
Period size: 50 Copynumber: 4.7 Consensus size: 50
41183968 ATGCCAAATT
* *
41183978 CATGTCCCAGACATGGTCTTACATGGGA--TGT-TTCTTGTACTGCCAATGC
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTG-A-TGCCAATGC
* * * * * * * *
41184027 CATATCCCAGATATGGTCTTACGTGGGACTTCTCATATCGGTGCCCATGC
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGATGCCAATGC
** * *
41184077 CATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAACGC
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGATGCCAATGC
41184127 CATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATGATGCCAATGC
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTCAT---CT---TGATGCCAATGC
*
41184183 CATGTCCCAGACATGGTCTTACATGGGATCTCT
1 CATGTCCCAGACATGGTCTTACATGGGACCTCT
41184216 TTACCCAAAT
Statistics
Matches: 158, Mismatches: 22, Indels: 11
0.83 0.12 0.06
Matches are distributed among these distances:
49 25 0.16
50 84 0.53
51 2 0.01
52 3 0.02
53 2 0.01
56 42 0.27
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.28
Consensus pattern (50 bp):
CATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGATGCCAATGC
Found at i:41191076 original size:50 final size:50
Alignment explanation
Indices: 41191015--41191201 Score: 212
Period size: 50 Copynumber: 3.6 Consensus size: 50
41191005 CTTGTACTGC
* * *
41191015 TGCCATATCCCAGATATGGTCTTACGTGGGACTTCTCATATCGGTGCCCA
1 TGCCATGTCCCAGACATGGTCTTACGTGGGACTTCTCATATCGGTGCCAA
* * *
41191065 TGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAA
1 TGCCATGTCCCAGACATGGTCTTACGTGGGACTTCTCATATCGGTGCCAA
* * * *
41191115 CGTCATGTCCCAGACATGGTCTTACATGGGACTTCTCATAACCTCAATGATGCCAA
1 TGCCATGTCCCAGACATGGTCTTACGTGGGACTTCTCAT-A--TC---GGTGCCAA
* *
41191171 TGCCATGTCCAAGACATGGTCTTACATGGGA
1 TGCCATGTCCCAGACATGGTCTTACGTGGGA
41191202 TCTCTTTACC
Statistics
Matches: 115, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
50 78 0.68
53 2 0.02
56 35 0.30
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCATGTCCCAGACATGGTCTTACGTGGGACTTCTCATATCGGTGCCAA
Found at i:41193208 original size:67 final size:66
Alignment explanation
Indices: 41193137--41193349 Score: 159
Period size: 67 Copynumber: 3.1 Consensus size: 66
41193127 TTGGTTCATA
41193137 CAAAATATTAATTGTATATATTTTACTGAATTTATTAATATAAACAATTATATTAATTAATTTCG
1 CAAAATATTAATTGTATATATTTTACTGAATTTATTAATATAAACAATTATATTAATTAATTTC-
41193202 GT
65 GT
** * ** * * * *
41193204 CAAAATA-TAAAAG-ACATGAAAATTAAT--ATTCTTTTGGAA-AGAATATAATTACTATATGAA
1 CAAAATATTAATTGTATAT--ATTTTACTGAATT-TATT--AATATAA-ACAATTA-TAT-T-AA
* *
41193264 TTTGA-TTCAT
57 -TTAATTTCGT
*
41193274 ACAAAATATTAATTGTATATATTTTACCGAATTTATTAATATAAACAATTATATTAATTAATTTC
1 -CAAAATATTAATTGTATATATTTTACTGAATTTATTAATATAAACAATTATATTAATTAATTTC
41193339 AGT
65 -GT
41193342 CAAAATAT
1 CAAAATAT
41193350 AAAAGATATG
Statistics
Matches: 105, Mismatches: 23, Indels: 36
0.64 0.14 0.22
Matches are distributed among these distances:
65 6 0.06
66 10 0.10
67 28 0.27
68 10 0.10
69 6 0.06
70 10 0.10
71 19 0.18
72 10 0.10
73 6 0.06
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41
Consensus pattern (66 bp):
CAAAATATTAATTGTATATATTTTACTGAATTTATTAATATAAACAATTATATTAATTAATTTCG
T
Found at i:41193355 original size:138 final size:138
Alignment explanation
Indices: 41193107--41193391 Score: 498
Period size: 138 Copynumber: 2.1 Consensus size: 138
41193097 CAAGAAGATA
* *
41193107 AATATAATTAATATATCAATTTGGTTCATACAAAATATTAATTGTATATATTTTACTGAATTTAT
1 AATATAATTAATATATCAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTAT
*
41193172 TAATATAAACAATTATATTAATTAATTTCGGTCAAAATATAAAAGACATGAAAATTAATATTCTT
66 TAATATAAACAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATGAAAATTAATATTCTT
*
41193237 TTGGAAAG
131 TCGGAAAG
* *
41193245 AATATAATTACTATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTAT
1 AATATAATTAATATATCAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTAT
* *
41193310 TAATATAAACAATTATATTAATTAATTTCAGTCAAAATATAAAAGATATGGAAATTAATATTCTT
66 TAATATAAACAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATGAAAATTAATATTCTT
41193375 TCGGAAAG
131 TCGGAAAG
41193383 AATATAATT
1 AATATAATT
41193392 CATTTTTCTA
Statistics
Matches: 139, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
138 139 1.00
ACGTcount: A:0.45, C:0.07, G:0.08, T:0.40
Consensus pattern (138 bp):
AATATAATTAATATATCAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTAT
TAATATAAACAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATGAAAATTAATATTCTT
TCGGAAAG
Found at i:41195912 original size:27 final size:27
Alignment explanation
Indices: 41195874--41195983 Score: 80
Period size: 27 Copynumber: 4.1 Consensus size: 27
41195864 TAACATTGTA
41195874 TTTAGTGTCTCGATGGACTACCCCGTG
1 TTTAGTGTCTCGATGGACTACCCCGTG
* * * *
41195901 TTTAGTGTCTCGGTGAACTACCTCATG
1 TTTAGTGTCTCGATGGACTACCCCGTG
* * ****
41195928 TTTACTAT-TCTGATGGACTATTTTGTG
1 TTTAGTGTCTC-GATGGACTACCCCGTG
* * *
41195955 TTCAGTGTCTCGATAGACTATCCC-TG
1 TTTAGTGTCTCGATGGACTACCCCGTG
41195981 TTT
1 TTT
41195984 GTTGTCCTGG
Statistics
Matches: 61, Mismatches: 20, Indels: 5
0.71 0.23 0.06
Matches are distributed among these distances:
26 6 0.10
27 53 0.87
28 2 0.03
ACGTcount: A:0.17, C:0.21, G:0.21, T:0.41
Consensus pattern (27 bp):
TTTAGTGTCTCGATGGACTACCCCGTG
Found at i:41205592 original size:17 final size:17
Alignment explanation
Indices: 41205570--41205602 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
41205560 ATTCTTTCAA
41205570 AATTGCCAC-AACATTTC
1 AATTGCC-CTAACATTTC
41205587 AATTGCCCTAACATTT
1 AATTGCCCTAACATTT
41205603 TTCATTCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 1 0.07
17 14 0.93
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.33
Consensus pattern (17 bp):
AATTGCCCTAACATTTC
Found at i:41218807 original size:20 final size:19
Alignment explanation
Indices: 41218758--41218796 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
41218748 CCTGATAATT
*
41218758 ATGAAAAAG-AAAAAAGAA
1 ATGAGAAAGTAAAAAAGAA
41218776 ATGAGAAAGTAAAATAAGAA
1 ATGAGAAAGTAAAA-AAGAA
41218796 A
1 A
41218797 GAAGAAGGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 4 0.22
20 6 0.33
ACGTcount: A:0.72, C:0.00, G:0.18, T:0.10
Consensus pattern (19 bp):
ATGAGAAAGTAAAAAAGAA
Found at i:41219599 original size:21 final size:21
Alignment explanation
Indices: 41219575--41219615 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
41219565 TAGCTTATTA
41219575 GCATGATTAAAT-TGTCTTAAC
1 GCATG-TTAAATGTGTCTTAAC
*
41219596 GCATGTTTAATGTGTCTTAA
1 GCATGTTAAATGTGTCTTAA
41219616 GGATGTTCAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.41
Consensus pattern (21 bp):
GCATGTTAAATGTGTCTTAAC
Found at i:41226011 original size:6 final size:6
Alignment explanation
Indices: 41226000--41226025 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
41225990 GCATTATAAA
41226000 CAAAAG CAAAAG CAAAAG CAAAAG CA
1 CAAAAG CAAAAG CAAAAG CAAAAG CA
41226026 TACAGACGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.65, C:0.19, G:0.15, T:0.00
Consensus pattern (6 bp):
CAAAAG
Found at i:41238018 original size:24 final size:23
Alignment explanation
Indices: 41237991--41238046 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 23
41237981 TTAATTCAAA
*
41237991 ATATTTATAAAAATTTCAAAATTT
1 ATATTTATAAAAAATT-AAAATTT
*
41238015 ATATTT-TAAAAAATTATAATTT
1 ATATTTATAAAAAATTAAAATTT
41238037 -TATTTA-AAAA
1 ATATTTATAAAA
41238047 TTCTAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
21 9 0.31
22 6 0.21
23 8 0.28
24 6 0.21
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (23 bp):
ATATTTATAAAAAATTAAAATTT
Found at i:41238024 original size:23 final size:22
Alignment explanation
Indices: 41237991--41238055 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 22
41237981 TTAATTCAAA
41237991 ATATTTATAAAAATTTCAAAATTT
1 ATATTT-TAAAAATTT-AAAATTT
* *
41238015 ATATTTTAAAAAATTATAATTT
1 ATATTTTAAAAATTTAAAATTT
41238037 -TA-TTTAAAAATTCTAAAAT
1 ATATTTTAAAAATT-TAAAAT
41238056 ATATCCAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
20 9 0.25
21 7 0.19
22 6 0.17
23 8 0.22
24 6 0.17
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (22 bp):
ATATTTTAAAAATTTAAAATTT
Found at i:41252821 original size:16 final size:16
Alignment explanation
Indices: 41252800--41252831 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
41252790 AAATATGGAA
*
41252800 GTAATCTTAGAAGATT
1 GTAATCTTAAAAGATT
41252816 GTAATCTTAAAAGATT
1 GTAATCTTAAAAGATT
41252832 TGATTTTGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.38
Consensus pattern (16 bp):
GTAATCTTAAAAGATT
Found at i:41252875 original size:16 final size:16
Alignment explanation
Indices: 41252856--41252886 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
41252846 TAAAATATCT
41252856 TAATATTAGAAGATTG
1 TAATATTAGAAGATTG
*
41252872 TAATATTATAAGATT
1 TAATATTAGAAGATT
41252887 AGATTTTCTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.13, T:0.42
Consensus pattern (16 bp):
TAATATTAGAAGATTG
Found at i:41252885 original size:55 final size:55
Alignment explanation
Indices: 41252801--41252904 Score: 163
Period size: 55 Copynumber: 1.9 Consensus size: 55
41252791 AATATGGAAG
* * * *
41252801 TAATCTTAGAAGATTGTAATCTTAAAAGATTTGATTTTGTAATCTTAAAATATCT
1 TAATATTAGAAGATTGTAATATTAAAAGATTAGATTTTCTAATCTTAAAATATCT
*
41252856 TAATATTAGAAGATTGTAATATTATAAGATTAGATTTTCTAATCTTAAA
1 TAATATTAGAAGATTGTAATATTAAAAGATTAGATTTTCTAATCTTAAA
41252905 GGATCAAGAT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 44 1.00
ACGTcount: A:0.40, C:0.06, G:0.11, T:0.43
Consensus pattern (55 bp):
TAATATTAGAAGATTGTAATATTAAAAGATTAGATTTTCTAATCTTAAAATATCT
Found at i:41256781 original size:3 final size:3
Alignment explanation
Indices: 41256775--41256807 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
41256765 AAGGGTGCTA
41256775 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
41256808 TGAACAATCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:41263864 original size:21 final size:22
Alignment explanation
Indices: 41263827--41263867 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
41263817 TAGAAGATCC
41263827 ATTTGCTGGAGCAGATGAAGAT
1 ATTTGCTGGAGCAGATGAAGAT
41263849 ATTTG-TGGAG-ACGATGAAG
1 ATTTGCTGGAGCA-GATGAAG
41263868 TGGAGTTGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.06
21 12 0.67
22 5 0.28
ACGTcount: A:0.32, C:0.07, G:0.34, T:0.27
Consensus pattern (22 bp):
ATTTGCTGGAGCAGATGAAGAT
Done.