Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62769430
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1067035 characters in sequence are not A, C, G, or T
File 157 of 206
Found at i:47523409 original size:11 final size:11
Alignment explanation
Indices: 47523369--47523402 Score: 68
Period size: 11 Copynumber: 3.1 Consensus size: 11
47523359 AAAAAAAATT
47523369 AGAAGAAGAGA
1 AGAAGAAGAGA
47523380 AGAAGAAGAGA
1 AGAAGAAGAGA
47523391 AGAAGAAGAGA
1 AGAAGAAGAGA
47523402 A
1 A
47523403 CAGGAAGGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (11 bp):
AGAAGAAGAGA
Found at i:47523409 original size:22 final size:22
Alignment explanation
Indices: 47523369--47523414 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
47523359 AAAAAAAATT
*
47523369 AGAAGAAGAGAAGAAGAAGAGA
1 AGAAGAAGAGAACAAGAAGAGA
* *
47523391 AGAAGAAGAGAACAGGAAGGGA
1 AGAAGAAGAGAACAAGAAGAGA
47523413 AG
1 AG
47523415 GAAGGGGAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.59, C:0.02, G:0.39, T:0.00
Consensus pattern (22 bp):
AGAAGAAGAGAACAAGAAGAGA
Found at i:47524914 original size:82 final size:81
Alignment explanation
Indices: 47524761--47524979 Score: 241
Period size: 82 Copynumber: 2.7 Consensus size: 81
47524751 CTTTCGGGGA
* * * * *
47524761 TTTAGTGGCGTATTTTAGGAAGCACCGCTAATGCTCAGGGATTTAGCGGCGTTTTCGAGAAAGTG
1 TTTAGCGGCGTTTTTTAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTCGAGAAAGTG
*
47524826 CTGCTAAAGATTA-GGC
66 CTGCTAAAG-CTAGGGC
* *
47524842 TTTTAGCGGCGTTTTTTAGAAAGCGCCACTAATGCTCAGGGCTTTAGCGGCGTTTTTGAGGAAAC
1 -TTTAGCGGCGTTTTTTAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTCGA-GAAA-
*
47524907 GT-C-GCTAATGCTAGGGC
63 GTGCTGCTAAAGCTAGGGC
* * *
47524924 TTTAGCGGCG-TTTTTAGGAAAGCGCCGCTAAAGATCA-GACTTTTAGCGGCGTTTTC
1 TTTAGCGGCGTTTTTTA-GAAAGCGCCGCTAATGCTCAGGGC-TTTAGCGGCGTTTTC
47524980 TAAAATGCGC
Statistics
Matches: 118, Mismatches: 14, Indels: 11
0.83 0.10 0.08
Matches are distributed among these distances:
80 8 0.07
81 43 0.36
82 60 0.51
83 5 0.04
84 2 0.02
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (81 bp):
TTTAGCGGCGTTTTTTAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTCGAGAAAGTG
CTGCTAAAGCTAGGGC
Found at i:47524923 original size:40 final size:41
Alignment explanation
Indices: 47524761--47524994 Score: 205
Period size: 41 Copynumber: 5.7 Consensus size: 41
47524751 CTTTCGGGGA
* * * *
47524761 TTTAGTGGCGTATTTT-AGGAAGCACCGCTAATGCTCAGGGA
1 TTTAGCGGCGT-TTTTGAGAAAGCGCCGCTAATGCTCAGGGC
* * * * * *
47524802 TTTAGCGGCGTTTTCGAGAAAGTGCTGCTAAAGATTA-GGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
* *
47524842 TTTTAGCGGCGTTTTTTAGAAAGCGCCACTAATGCTCAGGGC
1 -TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
*
47524884 TTTAGCGGCGTTTTTGAGGAAA-CGTCGCTAATGCT-AGGGC
1 TTTAGCGGCGTTTTTGA-GAAAGCGCCGCTAATGCTCAGGGC
* * *
47524924 TTTAGCGGCGTTTTT-AGGAAAGCGCCGCTAAAGATCA-GAC
1 TTTAGCGGCGTTTTTGA-GAAAGCGCCGCTAATGCTCAGGGC
47524964 TTTTAGCGGCGTTTTCT-A-AAATGCGCCGCTA
1 -TTTAGCGGCGTTTT-TGAGAAA-GCGCCGCTA
47524995 GTACTCAGAG
Statistics
Matches: 159, Mismatches: 25, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
39 6 0.04
40 40 0.25
41 104 0.65
42 9 0.06
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGC
Found at i:47525202 original size:14 final size:14
Alignment explanation
Indices: 47525183--47525231 Score: 62
Period size: 14 Copynumber: 3.5 Consensus size: 14
47525173 TATTACTATA
*
47525183 GTTTAGGGTTTTTG
1 GTTTAGGGTTTATG
*
47525197 GTTTAGGGTATATG
1 GTTTAGGGTTTATG
* *
47525211 GTTTAGAGTTTAAG
1 GTTTAGGGTTTATG
47525225 GTTTAGG
1 GTTTAGG
47525232 TGTTACCATC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 29 1.00
ACGTcount: A:0.18, C:0.00, G:0.35, T:0.47
Consensus pattern (14 bp):
GTTTAGGGTTTATG
Found at i:47529929 original size:43 final size:43
Alignment explanation
Indices: 47529861--47530143 Score: 322
Period size: 43 Copynumber: 6.6 Consensus size: 43
47529851 AAATATTTTT
* * * *
47529861 TAAAGGTCATGTT-TTTAGTGGCGTTTGTAGAAAAAGCGCCTC
1 TAAAGGTCTTGTTCTTTAGCGGCGTTTGTGGAAAAAGCGCCGC
* * * *
47529903 TAAAGGTCTTGTTCTTTAGCGTCGTTTATGGAAAAAGCGTCGT
1 TAAAGGTCTTGTTCTTTAGCGGCGTTTGTGGAAAAAGCGCCGC
* * * *
47529946 TAAAGGTCATGTTCTATAGAGGCGTTTGTGGGAAAAA-TGCCGC
1 TAAAGGTCTTGTTCTTTAGCGGCGTTTGT-GGAAAAAGCGCCGC
* * *
47529989 TAAAGGTCTT-TATCTTTAGCGGCGTTTGTAGAAGAAGCGCCGT
1 TAAAGGTCTTGT-TCTTTAGCGGCGTTTGTGGAAAAAGCGCCGC
* * *
47530032 TAAAGGTCTTGTTCTTTAGCGGTGTTT-TTGAGAAAGCGCCGC
1 TAAAGGTCTTGTTCTTTAGCGGCGTTTGTGGAAAAAGCGCCGC
* * *
47530074 GAAAGGTCTTGTTCTATAGCGGCGTTTGTGGGAAAAGCGCCGC
1 TAAAGGTCTTGTTCTTTAGCGGCGTTTGTGGAAAAAGCGCCGC
*
47530117 TAAAGGTCTTGTTCTTTAGTGGCGTTT
1 TAAAGGTCTTGTTCTTTAGCGGCGTTT
47530144 ATTTCTAAAA
Statistics
Matches: 198, Mismatches: 37, Indels: 11
0.80 0.15 0.04
Matches are distributed among these distances:
42 53 0.27
43 137 0.69
44 8 0.04
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.34
Consensus pattern (43 bp):
TAAAGGTCTTGTTCTTTAGCGGCGTTTGTGGAAAAAGCGCCGC
Found at i:47530101 original size:85 final size:84
Alignment explanation
Indices: 47529860--47530143 Score: 311
Period size: 85 Copynumber: 3.3 Consensus size: 84
47529850 AAAATATTTT
* * * *
47529860 TTAAAGGTCATGTT-TTTAGTGGCGTTTGTAGAAAAAGCGCCTCTAAAGGTCTTGTTCTTTAGCG
1 TTAAAGGTCATGTTCTTTAGAGGCGTTT-TTGAGAAAGCGCCGCTAAAGGTCTTGTTCTTTAGCG
* * *
47529924 TCGTTTATGGAAAAAGCGTCG
65 GCGTTTGTGG-AAAAGCGCCG
* * * **
47529945 TTAAAGGTCATGTTCTATAGAGGCGTTTGTGGGAAAAATGCCGCTAAAGGTCTT-TATCTTTAGC
1 TTAAAGGTCATGTTCTTTAGAGGCGTTTTTGAG-AAAGCGCCGCTAAAGGTCTTGT-TCTTTAGC
*
47530009 GGCGTTTGTAGAAGAAGCGCCG
64 GGCGTTTGTGGAA-AAGCGCCG
* * * * *
47530031 TTAAAGGTCTTGTTCTTTAGCGGTGTTTTTGAGAAAGCGCCGCGAAAGGTCTTGTTCTATAGCGG
1 TTAAAGGTCATGTTCTTTAGAGGCGTTTTTGAGAAAGCGCCGCTAAAGGTCTTGTTCTTTAGCGG
47530096 CGTTTGTGGGAAAAGCGCCG
66 CGTTTGT-GGAAAAGCGCCG
* * *
47530116 CTAAAGGTCTTGTTCTTTAGTGGCGTTT
1 TTAAAGGTCATGTTCTTTAGAGGCGTTT
47530144 ATTTCTAAAA
Statistics
Matches: 166, Mismatches: 27, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
85 84 0.51
86 82 0.49
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.34
Consensus pattern (84 bp):
TTAAAGGTCATGTTCTTTAGAGGCGTTTTTGAGAAAGCGCCGCTAAAGGTCTTGTTCTTTAGCGG
CGTTTGTGGAAAAGCGCCG
Found at i:47530116 original size:128 final size:129
Alignment explanation
Indices: 47529861--47530143 Score: 396
Period size: 128 Copynumber: 2.2 Consensus size: 129
47529851 AAATATTTTT
*
47529861 TAAAGGTCATGTT-TTTAGTGGCGTTTGTAGAAAAAGCGCCTCTAAAGGTCTTGTTCTTTAGCGT
1 TAAAGGTCTTGTTCTTTAGTGGCGTTTGTAGAAAAAGCGCCTCTAAAGGTCTTGTTCTTTAGCGT
* ** *
47529925 CGTTTATGGAAAAAGCGTCGTTAAAGGTCATGTTCTATAGAGGCGTTTGTGGGAAAAATGCCGC
66 CGTTTATGGAAAAAGCGCCGCGAAAGGTCATGTTCTATAGAGGCGTTTGTGGGAAAAACGCCGC
* *
47529989 TAAAGGTCTT-TATCTTTAGCGGCGTTTGTAGAAGAAGCGCCGT-TAAAGGTCTTGTTCTTTAGC
1 TAAAGGTCTTGT-TCTTTAGTGGCGTTTGTAGAAAAAGCGCC-TCTAAAGGTCTTGTTCTTTAGC
* * * * *
47530052 GGT-GTTT-TTGAGAAAGCGCCGCGAAAGGTCTTGTTCTATAGCGGCGTTTGTGGGAAAAGCGCC
64 -GTCGTTTATGGAAAAAGCGCCGCGAAAGGTCATGTTCTATAGAGGCGTTTGTGGGAAAAACGCC
47530115 GC
128 GC
47530117 TAAAGGTCTTGTTCTTTAGTGGCGTTT
1 TAAAGGTCTTGTTCTTTAGTGGCGTTT
47530144 ATTTCTAAAA
Statistics
Matches: 137, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
127 1 0.01
128 83 0.61
129 50 0.36
130 3 0.02
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.34
Consensus pattern (129 bp):
TAAAGGTCTTGTTCTTTAGTGGCGTTTGTAGAAAAAGCGCCTCTAAAGGTCTTGTTCTTTAGCGT
CGTTTATGGAAAAAGCGCCGCGAAAGGTCATGTTCTATAGAGGCGTTTGTGGGAAAAACGCCGC
Found at i:47530874 original size:14 final size:14
Alignment explanation
Indices: 47530855--47530890 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
47530845 ATATTTTTTT
*
47530855 TTCTAATAATACTA
1 TTCTAACAATACTA
*
47530869 TTCTAACGATACTA
1 TTCTAACAATACTA
47530883 TTCTAACA
1 TTCTAACA
47530891 TGTAATTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.39, C:0.19, G:0.03, T:0.39
Consensus pattern (14 bp):
TTCTAACAATACTA
Found at i:47531769 original size:31 final size:33
Alignment explanation
Indices: 47531688--47531796 Score: 87
Period size: 33 Copynumber: 3.4 Consensus size: 33
47531678 CGCAGTATAG
* * * * * *
47531688 CACTCCTCTCGGCTCGTATGCACTGCATTATTC
1 CACTCCTCCCGGATCGTATCCACCGCAATACTC
*** * *
47531721 CACTCCTCTTTGCTCGTATCTACCGCAATACT-
1 CACTCCTCCCGGATCGTATCCACCGCAATACTC
* *
47531753 C-CTCCTCCCGGATCGTATCCACCGTAGTACTC
1 CACTCCTCCCGGATCGTATCCACCGCAATACTC
47531785 CACTCCTCCCGG
1 CACTCCTCCCGG
47531797 CTCAAGTTCA
Statistics
Matches: 60, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
31 23 0.38
32 2 0.03
33 35 0.58
ACGTcount: A:0.16, C:0.41, G:0.14, T:0.29
Consensus pattern (33 bp):
CACTCCTCCCGGATCGTATCCACCGCAATACTC
Found at i:47532169 original size:48 final size:48
Alignment explanation
Indices: 47532098--47532412 Score: 463
Period size: 48 Copynumber: 6.6 Consensus size: 48
47532088 ACTCTGTAAT
* * * *
47532098 ATGAATAAACTTTGTAATATAAATTAAATACATTACAATATTAAAATG
1 ATGAACAAACTTTGTAATATAAATTAGATACATTACAACATTAAAACG
* * * *
47532146 ATGAACAAACTTTGCAATATAAATTAGATACATTATAATATTAAAATG
1 ATGAACAAACTTTGTAATATAAATTAGATACATTACAACATTAAAACG
* *
47532194 ATGAACAAAATTTGTAATATAAATTAGATACATTACAGCATTAAAACG
1 ATGAACAAACTTTGTAATATAAATTAGATACATTACAACATTAAAACG
*
47532242 AGGAACAAACTTTGTAATATAAATTAGATACATTACAACATTAAAACG
1 ATGAACAAACTTTGTAATATAAATTAGATACATTACAACATTAAAACG
*
47532290 A-GAAACAAACTTTGTAATATAAATTAGATATATTACAACATTAAAACG
1 ATG-AACAAACTTTGTAATATAAATTAGATACATTACAACATTAAAACG
* * *
47532338 AGGAACAAACTTTGTAATATAAATTAGATGCATTACAACATTAAAATG
1 ATGAACAAACTTTGTAATATAAATTAGATACATTACAACATTAAAACG
47532386 AAT-AACAAACTTTGTAATATAAATTAG
1 -ATGAACAAACTTTGTAATATAAATTAG
47532413 GTACCTTAGC
Statistics
Matches: 246, Mismatches: 18, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
47 1 0.00
48 243 0.99
49 2 0.01
ACGTcount: A:0.50, C:0.10, G:0.09, T:0.31
Consensus pattern (48 bp):
ATGAACAAACTTTGTAATATAAATTAGATACATTACAACATTAAAACG
Found at i:47536210 original size:5 final size:6
Alignment explanation
Indices: 47536194--47536219 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
47536184 CCATTCTCTT
47536194 TAAAAA TAAAAA TAAAAA TAAAAA TA
1 TAAAAA TAAAAA TAAAAA TAAAAA TA
47536220 CATTTTCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
TAAAAA
Found at i:47536386 original size:27 final size:27
Alignment explanation
Indices: 47536356--47536422 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 27
47536346 TAATACACTG
* * *
47536356 GTGCCGCCTATCAAATAGGGGTCACCA
1 GTGCCGCCTACCAAATAAGGGCCACCA
* *
47536383 GTGCCGCCTACCAGATAAGGGCCACTA
1 GTGCCGCCTACCAAATAAGGGCCACCA
47536410 GTGCCGCCTACCA
1 GTGCCGCCTACCA
47536423 CACCCCTGCA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.24, C:0.34, G:0.25, T:0.16
Consensus pattern (27 bp):
GTGCCGCCTACCAAATAAGGGCCACCA
Found at i:47547522 original size:8 final size:8
Alignment explanation
Indices: 47547496--47547528 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
47547486 CACTTTATCT
47547496 ATTTTT-A
1 ATTTTTAA
47547503 ATTTTTAGA
1 ATTTTTA-A
47547512 ATTTTTAA
1 ATTTTTAA
47547520 ATTTTTAA
1 ATTTTTAA
47547528 A
1 A
47547529 AAGAATTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 6 0.25
8 10 0.42
9 8 0.33
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (8 bp):
ATTTTTAA
Found at i:47552073 original size:55 final size:55
Alignment explanation
Indices: 47551949--47552113 Score: 206
Period size: 55 Copynumber: 3.0 Consensus size: 55
47551939 TTCTAATTGT
* * * *
47551949 TGGGACATTGATGGTCGACATCCTTGTACTAGATTCGAGAAAAAAAAATTGGGTGC
1 TGGGACACTGATGGTCGACACCCTTGTACTAGATTTGAG-AAAAAAATTTGGGTGC
* *
47552005 TAGCACACTGATGGTCGACACCCTTGTACTAGATTTGAGAAAAAAATTTGGGTGC
1 TGGGACACTGATGGTCGACACCCTTGTACTAGATTTGAGAAAAAAATTTGGGTGC
** * *
47552060 TGGGACACTGATGGTTAACACCCTTGTGCTAGAATTTTA-AAAAAAATTTTGGGT
1 TGGGACACTGATGGTCGACACCCTTGTACTAG-ATTTGAGAAAAAAA-TTTGGGT
47552114 CAAGTGAAGT
Statistics
Matches: 95, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
55 49 0.52
56 46 0.48
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (55 bp):
TGGGACACTGATGGTCGACACCCTTGTACTAGATTTGAGAAAAAAATTTGGGTGC
Found at i:47555274 original size:47 final size:47
Alignment explanation
Indices: 47555214--47555453 Score: 328
Period size: 47 Copynumber: 5.1 Consensus size: 47
47555204 TTATCCAATT
* **
47555214 ATTAAATAAATAAAATT-TTTAATTATTATATAGTGTAAAATAAATGT
1 ATTAAATAAAT-AAATTATTCAATTATTATATAGTGTAAAATAAATAA
* *
47555261 TTTAAATAAATAAATTATT-AAGTTATTATATAGTGTTAAAGTAAATAA
1 ATTAAATAAATAAATTATTCAA-TTATTATATAGTG-TAAAATAAATAA
**
47555309 ATTAAATAAATAAATTATTCAATTA-T-TATAGTGTAAAATAAATGT
1 ATTAAATAAATAAATTATTCAATTATTATATAGTGTAAAATAAATAA
* *
47555354 CTTAAATAAATAAATTATTCAATTATTATATAGTGTAAAGTAAATAA
1 ATTAAATAAATAAATTATTCAATTATTATATAGTGTAAAATAAATAA
*
47555401 ATTAAATAAACAAATTATTCAATTATTATATAGTGTAAAATAAATAA
1 ATTAAATAAATAAATTATTCAATTATTATATAGTGTAAAATAAATAA
47555448 A-TAAAT
1 ATTAAAT
47555454 TATTCAACAA
Statistics
Matches: 172, Mismatches: 15, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
45 33 0.19
46 20 0.12
47 87 0.51
48 30 0.17
49 2 0.01
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.40
Consensus pattern (47 bp):
ATTAAATAAATAAATTATTCAATTATTATATAGTGTAAAATAAATAA
Found at i:47555320 original size:13 final size:14
Alignment explanation
Indices: 47555296--47555325 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
47555286 TTATATAGTG
47555296 TTAAAGTAAATAAA
1 TTAAAGTAAATAAA
47555310 TTAAA-TAAATAAA
1 TTAAAGTAAATAAA
47555323 TTA
1 TTA
47555326 TTCAATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (14 bp):
TTAAAGTAAATAAA
Found at i:47555364 original size:93 final size:94
Alignment explanation
Indices: 47555214--47555445 Score: 382
Period size: 93 Copynumber: 2.5 Consensus size: 94
47555204 TTATCCAATT
* *
47555214 ATTAAATAAATAAAATT-TTTAATTATTATATAGTGTAAAATAAATGTTTTAAATAAATAAATTA
1 ATTAAATAAAT-AAATTATTCAATTATTATATAGTGTAAAATAAATGTCTTAAATAAATAAATTA
47555278 TT-AAGTTATTATATAGTGTTAAAGTAAATAA
65 TTCAA-TTATTATATAGTG-TAAAGTAAATAA
47555309 ATTAAATAAATAAATTATTCAATTA-T-TATAGTGTAAAATAAATGTCTTAAATAAATAAATTAT
1 ATTAAATAAATAAATTATTCAATTATTATATAGTGTAAAATAAATGTCTTAAATAAATAAATTAT
47555372 TCAATTATTATATAGTGTAAAGTAAATAA
66 TCAATTATTATATAGTGTAAAGTAAATAA
*
47555401 ATTAAATAAACAAATTATTCAATTATTATATAGTGTAAAATAAAT
1 ATTAAATAAATAAATTATTCAATTATTATATAGTGTAAAATAAAT
47555446 AAATAAATTA
Statistics
Matches: 130, Mismatches: 3, Indels: 9
0.92 0.02 0.06
Matches are distributed among these distances:
92 36 0.28
93 51 0.39
94 25 0.19
95 18 0.14
ACGTcount: A:0.51, C:0.02, G:0.06, T:0.40
Consensus pattern (94 bp):
ATTAAATAAATAAATTATTCAATTATTATATAGTGTAAAATAAATGTCTTAAATAAATAAATTAT
TCAATTATTATATAGTGTAAAGTAAATAA
Found at i:47559247 original size:21 final size:22
Alignment explanation
Indices: 47559218--47559260 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
47559208 ATGCAAATGA
47559218 AATAGAAATAGATAAATAAATT
1 AATAGAAATAGATAAATAAATT
* *
47559240 AATA-AAATATATAAATCAATT
1 AATAGAAATAGATAAATAAATT
47559261 CTAATACAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (22 bp):
AATAGAAATAGATAAATAAATT
Found at i:47559885 original size:109 final size:107
Alignment explanation
Indices: 47559709--47559938 Score: 370
Period size: 109 Copynumber: 2.1 Consensus size: 107
47559699 TGGATTAAGA
* * * *
47559709 TTTAAGAGGATATTTGGCTATTTGGTCGAACGAGAAGTCGAAACCCAGCACATTAGGGCACGTTT
1 TTTAAAAGGATATTTGGCTATTTGGTCGAACGAAAAATCGAAACCCAGCACATTAGGGCACGCTT
*
47559774 TCTCGAATTTCCAAACGTAAAATATTACCTTATTTTGAAATT
66 TCTCGAATTTCCAAACGCAAAATATTACCTTATTTTGAAATT
*
47559816 TTTAAAAGGATATTTGGCTATTTGGTCGAACAAGAAAAATCGAAACCTAGCACATTAGGGCACGC
1 TTTAAAAGGATATTTGGCTATTTGGTCGAAC--GAAAAATCGAAACCCAGCACATTAGGGCACGC
* *
47559881 TTTCTTGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAATT
64 TTTCTCGAATTTCCAAACGCAAAATATTACCTTATTTTGAAATT
47559925 TTTAAAAGGATATT
1 TTTAAAAGGATATT
47559939 AGTATGCGTA
Statistics
Matches: 113, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
107 30 0.27
109 83 0.73
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (107 bp):
TTTAAAAGGATATTTGGCTATTTGGTCGAACGAAAAATCGAAACCCAGCACATTAGGGCACGCTT
TCTCGAATTTCCAAACGCAAAATATTACCTTATTTTGAAATT
Found at i:47560459 original size:40 final size:40
Alignment explanation
Indices: 47560409--47560531 Score: 160
Period size: 40 Copynumber: 3.1 Consensus size: 40
47560399 CGTTTGGACA
*
47560409 AAAAACGCCACTAAAAATCAAGCATTAGCGGTGCTTTTTG
1 AAAAACGCCACTAAAAATCAAGCATTAGCGGCGCTTTTTG
** *
47560449 AAAAACGCCACTAAAGGTCTAGCATTAGCGGCGCTTTTTG
1 AAAAACGCCACTAAAAATCAAGCATTAGCGGCGCTTTTTG
* * * *
47560489 GAAAATGCCACTAAAAAT-AAGTATTAGCGGCG-TTTTTC
1 AAAAACGCCACTAAAAATCAAGCATTAGCGGCGCTTTTTG
47560527 AAAAA
1 AAAAA
47560532 GCGGCGCAAA
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
38 9 0.13
39 12 0.17
40 50 0.70
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (40 bp):
AAAAACGCCACTAAAAATCAAGCATTAGCGGCGCTTTTTG
Found at i:47560678 original size:56 final size:55
Alignment explanation
Indices: 47560585--47560696 Score: 161
Period size: 56 Copynumber: 2.0 Consensus size: 55
47560575 TTGGGGGGCA
* * * * *
47560585 TTTAGCGGCGTTTTTGAAAAATCGCCGCTAATGCTCGGGCCTTTAGCGGCGCTTTT
1 TTTAGCGGCATTTTTAAAAAAGCGCCGCCAATACTCGGGCCTTTAGCGGCG-TTTT
*
47560641 TTTAGCGGCATTTTTAAAAAAGCGCCGCCAATACTCGGGCCTTTGGCGGCGTTTT
1 TTTAGCGGCATTTTTAAAAAAGCGCCGCCAATACTCGGGCCTTTAGCGGCGTTTT
47560696 T
1 T
47560697 AAAGAAGCGC
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
55 5 0.10
56 45 0.90
ACGTcount: A:0.18, C:0.23, G:0.26, T:0.33
Consensus pattern (55 bp):
TTTAGCGGCATTTTTAAAAAAGCGCCGCCAATACTCGGGCCTTTAGCGGCGTTTT
Found at i:47560705 original size:41 final size:41
Alignment explanation
Indices: 47560641--47560796 Score: 188
Period size: 41 Copynumber: 3.8 Consensus size: 41
47560631 CGGCGCTTTT
* * *
47560641 TTTAGCGGCATTTTTAAAAAAGCGCCGCCAATACTCGGGCC
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATACTCGGGCC
* * * *
47560682 TTTGGCGGCG-TTTTTAAAGAAGCGCCGCTAATGCTCAGGAC
1 TTTAGCGGCGTTTTTTAAA-AAGCGCCGCTAATACTCGGGCC
* **
47560723 TTTAGCGGCGTTTTTTGAAAAGCGCCGCTAATGTTCGGGCC
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATACTCGGGCC
* *
47560764 TTTAGCGGTGTTTTTTGAAAAGCGCCGCTAATA
1 TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATA
47560797 ATAATAAAAT
Statistics
Matches: 99, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
40 7 0.07
41 85 0.86
42 7 0.07
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.29
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATACTCGGGCC
Found at i:47560778 original size:82 final size:82
Alignment explanation
Indices: 47560641--47560795 Score: 213
Period size: 82 Copynumber: 1.9 Consensus size: 82
47560631 CGGCGCTTTT
*
47560641 TTTAGCGGCATTTTTAAAAAAGCGCCGCCAATACTCGGGCCTTTGGCGGCG-TTTTTAAAGAAGC
1 TTTAGCGGCATTTTTAAAAAAGCGCCGCCAATACTCGGGCCTTTAGCGGCGTTTTTTAAA-AAGC
47560705 GCCGCTAATGCTCAGGAC
65 GCCGCTAATGCTCAGGAC
* ** * ** * *
47560723 TTTAGCGGCGTTTTTTGAAAAGCGCCGCTAATGTTCGGGCCTTTAGCGGTGTTTTTTGAAAAGCG
1 TTTAGCGGCATTTTTAAAAAAGCGCCGCCAATACTCGGGCCTTTAGCGGCGTTTTTTAAAAAGCG
47560788 CCGCTAAT
66 CCGCTAAT
47560796 AATAATAAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
82 56 0.89
83 7 0.11
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (82 bp):
TTTAGCGGCATTTTTAAAAAAGCGCCGCCAATACTCGGGCCTTTAGCGGCGTTTTTTAAAAAGCG
CCGCTAATGCTCAGGAC
Found at i:47561328 original size:15 final size:15
Alignment explanation
Indices: 47561308--47561344 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
47561298 CCATGAACTT
47561308 GGATTTTCATTCTTG
1 GGATTTTCATTCTTG
47561323 GGATTTTCATTCTTG
1 GGATTTTCATTCTTG
*
47561338 GAATTTT
1 GGATTTT
47561345 TGTGAGTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.16, C:0.11, G:0.19, T:0.54
Consensus pattern (15 bp):
GGATTTTCATTCTTG
Found at i:47563448 original size:43 final size:43
Alignment explanation
Indices: 47563350--47563555 Score: 218
Period size: 43 Copynumber: 4.8 Consensus size: 43
47563340 AGTTTATGTT
* ** * * * *
47563350 TTTAGCGGCGTTTTTGCTAGAAGCACCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCTTGGTC
* * ** * *
47563393 TATATCGGCGTTTGTGATAAAAGCACCGCTAAAGATCTTGGTA
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCTTGGTC
* *
47563436 TTTAGCGACGTTTGTGGGAAAAGCGCCGCTAAA-ATATGTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCT-TGGTC
* * *
47563479 TTTAGCGGCGTTTGTGGGGAAAGCGCCACTAAATG-TCGTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAA-GATCTTGGTC
47563522 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
47563556 TTAGCGACGC
Statistics
Matches: 137, Mismatches: 23, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
42 4 0.03
43 132 0.96
44 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGATCTTGGTC
Found at i:47566614 original size:19 final size:19
Alignment explanation
Indices: 47566592--47566628 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
47566582 TATCAAAATT
*
47566592 ATATATAAATTTTGATTTA
1 ATATATAAATTTTAATTTA
*
47566611 ATATATAATTTTTAATTT
1 ATATATAAATTTTAATTT
47566629 TCGTAATTGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (19 bp):
ATATATAAATTTTAATTTA
Found at i:47566847 original size:2 final size:2
Alignment explanation
Indices: 47566840--47566868 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
47566830 AAATAAAAAT
47566840 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
47566869 TTCTCAACCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:47567484 original size:21 final size:21
Alignment explanation
Indices: 47567460--47567503 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
47567450 AATTTTAGTA
*
47567460 AAAAGTTGTAAAAAAATTATT
1 AAAAGTTGTAAAAAAAATATT
*
47567481 AAAATTTGTAAAAAAAATATT
1 AAAAGTTGTAAAAAAAATATT
47567502 AA
1 AA
47567504 TTTTTTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (21 bp):
AAAAGTTGTAAAAAAAATATT
Found at i:47568378 original size:19 final size:18
Alignment explanation
Indices: 47568351--47568402 Score: 50
Period size: 19 Copynumber: 2.8 Consensus size: 18
47568341 TATATAATAT
*
47568351 AAATTTATAAAAATATAAA
1 AAATATATAAAAATA-AAA
* *
47568370 AAATATATACAACTAAAA
1 AAATATATAAAAATAAAA
*
47568388 ATATATATTAAAAAT
1 AAATATA-TAAAAAT
47568403 CTTATAGTAT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
18 9 0.35
19 17 0.65
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (18 bp):
AAATATATAAAAATAAAA
Found at i:47568447 original size:19 final size:20
Alignment explanation
Indices: 47568420--47568469 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
47568410 TATTTTGAAA
*
47568420 AATATAAAATATAT-AAATT
1 AATAAAAAATATATGAAATT
47568439 AATAAAAAAT-TATGAAATT
1 AATAAAAAATATATGAAATT
*
47568458 -ATAACAAATATA
1 AATAAAAAATATA
47568470 AATATATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 11 0.41
19 16 0.59
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (20 bp):
AATAAAAAATATATGAAATT
Found at i:47586545 original size:98 final size:98
Alignment explanation
Indices: 47586371--47586565 Score: 327
Period size: 98 Copynumber: 2.0 Consensus size: 98
47586361 ACAATAAAAT
* * *
47586371 TTTAGAAGAACATCCACTTATCCAAGATTTAAGAAATCACACTCAATACGTTAGGGCACGATTCC
1 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
* *
47586436 TCTAGAATCCCAAACTCGGAGTATTTCCTTTAC
66 TCTAAAATCCCAAACTCGGAATATTTCCTTTAC
47586469 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
1 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
* *
47586534 TTTAAAATCCCAAATTCGGAATATTTCCTTTA
66 TCTAAAATCCCAAACTCGGAATATTTCCTTTA
47586566 TTATTTTTAA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.29
Consensus pattern (98 bp):
TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
TCTAAAATCCCAAACTCGGAATATTTCCTTTAC
Found at i:47589226 original size:19 final size:19
Alignment explanation
Indices: 47589179--47589311 Score: 212
Period size: 19 Copynumber: 6.8 Consensus size: 19
47589169 AATCATATAT
47589179 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
47589198 TCTAAAGATTATATATCATA
1 TCT-AAGATTGCATATCATA
47589218 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
47589237 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
47589258 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
47589277 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
47589296 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
47589312 CTCAAAAATT
Statistics
Matches: 105, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
19 69 0.66
20 17 0.16
21 19 0.18
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:47589263 original size:40 final size:40
Alignment explanation
Indices: 47589179--47589311 Score: 220
Period size: 40 Copynumber: 3.4 Consensus size: 40
47589169 AATCATATAT
47589179 TCTAAGATTGCATATCATATCTAAAGATT--ATATATCATA
1 TCTAAGATTGCATATCATATCT-AAGATTGCATATATCATA
47589218 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
*
47589258 TCTAAGATTGCATATCATATCTAGGATTGC--ATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
47589296 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
47589312 CTCAAAAATT
Statistics
Matches: 91, Mismatches: 1, Indels: 5
0.94 0.01 0.05
Matches are distributed among these distances:
38 30 0.33
39 22 0.24
40 39 0.43
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.38
Consensus pattern (40 bp):
TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
Found at i:47589277 original size:59 final size:60
Alignment explanation
Indices: 47589172--47589310 Score: 216
Period size: 59 Copynumber: 2.4 Consensus size: 60
47589162 ATTACAAAAT
*
47589172 CATAT-AT-TCTAAGATTGC--ATATCATATCTAAAGATTATATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAAGATTACATATCATATCTAAGATTG
* *
47589228 CATATCATATCTAAGATTGCATATATCATATCT-AAGATTGCATATCATATCTAGGATTG
1 CATATCATATCTAAGATTGCATATATCATATCTAAAGATTACATATCATATCTAAGATTG
47589287 CATATCATATCTAAGATTGCATAT
1 CATATCATATCTAAGATTGCATAT
47589311 CCTCAAAAAT
Statistics
Matches: 76, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
56 5 0.07
57 2 0.03
58 11 0.14
59 47 0.62
60 11 0.14
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.38
Consensus pattern (60 bp):
CATATCATATCTAAGATTGCATATATCATATCTAAAGATTACATATCATATCTAAGATTG
Found at i:47589738 original size:7 final size:7
Alignment explanation
Indices: 47589728--47589752 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
47589718 AATAAAAAAT
47589728 ATATTTA
1 ATATTTA
47589735 ATATTTA
1 ATATTTA
47589742 ATATTTA
1 ATATTTA
47589749 ATAT
1 ATAT
47589753 ATTACCGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
ATATTTA
Found at i:47591348 original size:23 final size:23
Alignment explanation
Indices: 47591322--47591381 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
47591312 CCACAAAGGT
47591322 AATTGCACCGAAGTGCCA-ATACA
1 AATTGCACCGAAGTGCCAGA-ACA
* *
47591345 AATTGCATCGAATTGCCAGAACA
1 AATTGCACCGAAGTGCCAGAACA
* *
47591368 AATCGCACCAAAGT
1 AATTGCACCGAAGT
47591382 TCTAGAATAA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
23 29 0.97
24 1 0.03
ACGTcount: A:0.40, C:0.25, G:0.17, T:0.18
Consensus pattern (23 bp):
AATTGCACCGAAGTGCCAGAACA
Found at i:47593089 original size:16 final size:17
Alignment explanation
Indices: 47593070--47593103 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
47593060 CAAATCCGAG
47593070 AAAATTC-AAGCTAAAA
1 AAAATTCGAAGCTAAAA
*
47593086 AAAATTCGAATCTAAAA
1 AAAATTCGAAGCTAAAA
47593103 A
1 A
47593104 GGATCGGGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.21
Consensus pattern (17 bp):
AAAATTCGAAGCTAAAA
Found at i:47603641 original size:33 final size:33
Alignment explanation
Indices: 47603604--47603670 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
47603594 CAATGAAAGC
*
47603604 AGCACTCATGCTTAGTTTAAACAAATACACAGT
1 AGCACTCATGCATAGTTTAAACAAATACACAGT
*
47603637 AGCACTTATGCATAGTTTAAACAAATACACAGT
1 AGCACTCATGCATAGTTTAAACAAATACACAGT
47603670 A
1 A
47603671 CATTTCCATC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.27
Consensus pattern (33 bp):
AGCACTCATGCATAGTTTAAACAAATACACAGT
Found at i:47608132 original size:3 final size:3
Alignment explanation
Indices: 47608124--47608162 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
47608114 ATAGGCGTAT
*
47608124 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA TTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
47608163 TCAATAAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:47610557 original size:11 final size:12
Alignment explanation
Indices: 47610543--47610571 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
47610533 AAAATATATT
47610543 AAAAAACA-AAA
1 AAAAAACAGAAA
47610554 AAAAAACAGAAA
1 AAAAAACAGAAA
47610566 AAAAAA
1 AAAAAA
47610572 ACCTGAACTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 8 0.47
12 9 0.53
ACGTcount: A:0.90, C:0.07, G:0.03, T:0.00
Consensus pattern (12 bp):
AAAAAACAGAAA
Found at i:47610722 original size:18 final size:17
Alignment explanation
Indices: 47610699--47610806 Score: 80
Period size: 18 Copynumber: 6.1 Consensus size: 17
47610689 GAAGGAGAGG
47610699 GGAAG-AAGAAGAAAGAAA
1 GGAAGAAAGAA-AAAG-AA
47610717 GGAAGAAAGAAAAAGAA
1 GGAAGAAAGAAAAAGAA
* *
47610734 GG-A-AAAGGAAATGAGA
1 GGAAGAAAGAAAAAGA-A
47610750 GGAAAGAAAG-AAAAGAA
1 GG-AAGAAAGAAAAAGAA
* *
47610767 GGAAAGAAAAGGAAAGAGGA
1 GG-AAG-AAA-GAAAAAGAA
47610787 GGAAAGAAAGAAAAAGAA
1 GG-AAGAAAGAAAAAGAA
47610805 GG
1 GG
47610807 CGTTTGGAAT
Statistics
Matches: 75, Mismatches: 7, Indels: 16
0.77 0.07 0.16
Matches are distributed among these distances:
15 9 0.12
16 4 0.05
17 11 0.15
18 27 0.36
19 13 0.17
20 11 0.15
ACGTcount: A:0.65, C:0.00, G:0.34, T:0.01
Consensus pattern (17 bp):
GGAAGAAAGAAAAAGAA
Found at i:47610732 original size:10 final size:10
Alignment explanation
Indices: 47610701--47610804 Score: 55
Period size: 10 Copynumber: 9.1 Consensus size: 10
47610691 AGGAGAGGGG
*
47610701 AAGAAGAAGA
1 AAGAAAAAGA
47610711 AAGAAAGGAAGA
1 AAGAAA--AAGA
47610723 AAGAAAAAGA
1 AAGAAAAAGA
* *
47610733 AGGAAAAGGA
1 AAGAAAAAGA
47610743 AATGAGAGGAAAGA
1 AA-GA-A--AAAGA
47610757 AAGAAAAGAAGGA
1 AAG-AAA-AA-GA
*
47610770 AAGAAAAGGA
1 AAGAAAAAGA
47610780 AAGAGGAGGAAAGA
1 AAGA--A--AAAGA
47610794 AAGAAAAAGA
1 AAGAAAAAGA
47610804 A
1 A
47610805 GGCGTTTGGA
Statistics
Matches: 74, Mismatches: 7, Indels: 26
0.69 0.07 0.24
Matches are distributed among these distances:
10 30 0.41
11 4 0.05
12 18 0.24
13 7 0.09
14 15 0.20
ACGTcount: A:0.67, C:0.00, G:0.32, T:0.01
Consensus pattern (10 bp):
AAGAAAAAGA
Found at i:47610789 original size:37 final size:37
Alignment explanation
Indices: 47610719--47610806 Score: 121
Period size: 37 Copynumber: 2.4 Consensus size: 37
47610709 GAAAGAAAGG
*
47610719 AAGAAAG-AAA-AA-GAAGGAAAAGGAAATGAGAGGA
1 AAGAAAGAAAAGAAGGAAAGAAAAGGAAATGAGAGGA
47610753 AAGAAAGAAAAGAAGGAAAGAAAAGGAAA-GAGGAGGA
1 AAGAAAGAAAAGAAGGAAAGAAAAGGAAATGA-GAGGA
47610790 AAGAAAGAAAAAGAAGG
1 AAGAAAG-AAAAGAAGG
47610807 CGTTTGGAAT
Statistics
Matches: 48, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
34 7 0.15
35 3 0.06
36 4 0.08
37 25 0.52
38 9 0.19
ACGTcount: A:0.66, C:0.00, G:0.33, T:0.01
Consensus pattern (37 bp):
AAGAAAGAAAAGAAGGAAAGAAAAGGAAATGAGAGGA
Found at i:47610947 original size:15 final size:15
Alignment explanation
Indices: 47610923--47610961 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
47610913 CAATAAGCAC
*
47610923 AATAACTAAAACTAG
1 AATAATTAAAACTAG
*
47610938 AATAATT-AAATTAG
1 AATAATTAAAACTAG
47610952 AATAATTAAA
1 AATAATTAAA
47610962 TTGATACAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (15 bp):
AATAATTAAAACTAG
Found at i:47610954 original size:14 final size:14
Alignment explanation
Indices: 47610935--47610963 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
47610925 TAACTAAAAC
47610935 TAGAATAATTAAAT
1 TAGAATAATTAAAT
47610949 TAGAATAATTAAAT
1 TAGAATAATTAAAT
47610963 T
1 T
47610964 GATACAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (14 bp):
TAGAATAATTAAAT
Found at i:47611951 original size:17 final size:17
Alignment explanation
Indices: 47611929--47611965 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
47611919 AGTAAGATGT
47611929 CATGAATATTAGAATAG
1 CATGAATATTAGAATAG
47611946 CATGAATATTAGAATAG
1 CATGAATATTAGAATAG
47611963 CAT
1 CAT
47611966 CTTACCCCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.46, C:0.08, G:0.16, T:0.30
Consensus pattern (17 bp):
CATGAATATTAGAATAG
Found at i:47614991 original size:32 final size:33
Alignment explanation
Indices: 47614940--47615084 Score: 87
Period size: 38 Copynumber: 4.1 Consensus size: 33
47614930 CCTTATTTTC
47614940 TTTTTTTTCCTTCCTTCCTTCCCTCTTCTTCTT
1 TTTTTTTTCCTTCCTTCCTTCCCTCTTCTTCTT
* *
47614973 TTTTTTTTCTCTT-C-TCCTTTCCTTTTCTTTCCTT
1 TTTTTTTTC-CTTCCTTCCTTCCCTCTTC-TT-CTT
* * * *
47615007 ATTTTTCTTTCTTTCCTCCCCTTTCCTTTTCTTTCCTT
1 -TTTTT-TTTCCTTCCT-TCCTTCCCTCTTC-TT-CTT
* * *
47615045 CTTTTTCTTTCTTTCCTCTCCTTTCCTTTTCCTTCTT
1 -TTTTT-TTTCCTTCCT-TCCTTCCCTCTT-CTTCTT
47615082 TTT
1 TTT
47615085 CTGTCTTCCT
Statistics
Matches: 97, Mismatches: 6, Indels: 15
0.82 0.05 0.13
Matches are distributed among these distances:
32 11 0.11
33 12 0.12
34 6 0.06
35 7 0.07
36 8 0.08
37 3 0.03
38 49 0.51
39 1 0.01
ACGTcount: A:0.01, C:0.33, G:0.00, T:0.66
Consensus pattern (33 bp):
TTTTTTTTCCTTCCTTCCTTCCCTCTTCTTCTT
Found at i:47615004 original size:10 final size:10
Alignment explanation
Indices: 47614989--47615086 Score: 73
Period size: 10 Copynumber: 10.2 Consensus size: 10
47614979 TTCTCTTCTC
47614989 CTTTCCTTTT
1 CTTTCCTTTT
47614999 CTTTCCTTATT
1 CTTTCCTT-TT
47615010 -TTT-C-TTT
1 CTTTCCTTTT
***
47615017 CTTTCCTCCC
1 CTTTCCTTTT
47615027 CTTTCCTTTT
1 CTTTCCTTTT
47615037 CTTTCCTTCTT
1 CTTTCCTT-TT
47615048 -TTT-C-TTT
1 CTTTCCTTTT
* *
47615055 CTTTCCTCTC
1 CTTTCCTTTT
47615065 CTTTCCTTTT
1 CTTTCCTTTT
* *
47615075 CCTTCTTTTT
1 CTTTCCTTTT
47615085 CT
1 CT
47615087 GTCTTCCTTT
Statistics
Matches: 67, Mismatches: 13, Indels: 16
0.70 0.14 0.17
Matches are distributed among these distances:
7 4 0.06
8 8 0.12
9 4 0.06
10 47 0.70
11 4 0.06
ACGTcount: A:0.01, C:0.34, G:0.00, T:0.65
Consensus pattern (10 bp):
CTTTCCTTTT
Found at i:47615017 original size:18 final size:18
Alignment explanation
Indices: 47614996--47615106 Score: 86
Period size: 18 Copynumber: 6.1 Consensus size: 18
47614986 CTCCTTTCCT
*
47614996 TTTCTTTCCTTATTTTTC
1 TTTCTTTCCTTCTTTTTC
* * *
47615014 TTTCTTTCCTCCCCTTTCC
1 TTTCTTTCCT-TCTTTTTC
47615033 TTTTCTTTCCTTCTTTTTC
1 -TTTCTTTCCTTCTTTTTC
*
47615052 TTTCTTTCC-TCTCCTTTC
1 TTTCTTTCCTTCT-TTTTC
*
47615070 -CT-TTTCCTTCTTTTTC
1 TTTCTTTCCTTCTTTTTC
*
47615086 TGTC-TTCCTTTCTTTCTTC
1 TTTCTTTCC-TTCTTT-TTC
47615105 TT
1 TT
47615107 CTTCCCCTCT
Statistics
Matches: 73, Mismatches: 12, Indels: 15
0.73 0.12 0.15
Matches are distributed among these distances:
16 9 0.12
17 12 0.16
18 29 0.40
19 13 0.18
20 10 0.14
ACGTcount: A:0.01, C:0.32, G:0.01, T:0.66
Consensus pattern (18 bp):
TTTCTTTCCTTCTTTTTC
Found at i:47615058 original size:28 final size:28
Alignment explanation
Indices: 47615027--47615106 Score: 76
Period size: 34 Copynumber: 2.8 Consensus size: 28
47615017 CTTTCCTCCC
*
47615027 CTTTCCTTTTCTTTCCTTCTTTTTCTTT
1 CTTTCCTTTTCTTTCCTTCTTTTTCTGT
47615055 CTTTCCTCTCCTTTCCTTTTCCTTCTTTTTCTGT
1 CTTT-C-CT--TTT-C-TTTCCTTCTTTTTCTGT
47615089 C-TTCC-TTTCTTT-CTTCTT
1 CTTTCCTTTTCTTTCCTTCTT
47615107 CTTCCCCTCT
Statistics
Matches: 45, Mismatches: 1, Indels: 15
0.74 0.02 0.25
Matches are distributed among these distances:
25 6 0.13
26 3 0.07
27 1 0.02
28 7 0.16
29 1 0.02
30 2 0.04
31 1 0.02
32 4 0.09
33 3 0.07
34 17 0.38
ACGTcount: A:0.00, C:0.33, G:0.01, T:0.66
Consensus pattern (28 bp):
CTTTCCTTTTCTTTCCTTCTTTTTCTGT
Found at i:47615097 original size:38 final size:38
Alignment explanation
Indices: 47614985--47615075 Score: 164
Period size: 38 Copynumber: 2.4 Consensus size: 38
47614975 TTTTTTCTCT
47614985 TCTCCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCC
1 TCTCCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCC
* *
47615023 TCCCCTTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCC
1 TCTCCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCC
47615061 TCTCCTTTCCTTTTC
1 TCTCCTTTCCTTTTC
47615076 CTTCTTTTTC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.01, C:0.35, G:0.00, T:0.64
Consensus pattern (38 bp):
TCTCCTTTCCTTTTCTTTCCTTATTTTTCTTTCTTTCC
Found at i:47615107 original size:28 final size:30
Alignment explanation
Indices: 47615029--47615110 Score: 80
Period size: 28 Copynumber: 2.7 Consensus size: 30
47615019 TTCCTCCCCT
* *
47615029 TTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCC
1 TTCC-TTTCTTT-CTTCTTCTTCTTTCTGTCC
*
47615061 TCTCCTTTCCTTT-TCCTTCTT-TTTCTGT-C
1 T-TCCTTT-CTTTCTTCTTCTTCTTTCTGTCC
47615090 TTCCTTTCTTTCTTCTTCTTC
1 TTCCTTTCTTTCTTCTTCTTC
47615111 CCCTCTCCTT
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
27 4 0.10
28 13 0.31
29 2 0.05
30 6 0.14
31 6 0.14
32 4 0.10
33 7 0.17
ACGTcount: A:0.00, C:0.33, G:0.01, T:0.66
Consensus pattern (30 bp):
TTCCTTTCTTTCTTCTTCTTCTTTCTGTCC
Found at i:47615188 original size:27 final size:27
Alignment explanation
Indices: 47615158--47615238 Score: 117
Period size: 27 Copynumber: 3.0 Consensus size: 27
47615148 AATTCAAGGG
*
47615158 TGGTGCCGCCAACCTGGTTCCCTCCAC
1 TGGTGCCGCCAACCTGCTTCCCTCCAC
****
47615185 TGGTGCCGCCAACCTGCTTCCCTTGTT
1 TGGTGCCGCCAACCTGCTTCCCTCCAC
47615212 TGGTGCCGCCAACCTGCTTCCCTCCAC
1 TGGTGCCGCCAACCTGCTTCCCTCCAC
47615239 CCAGGGAGTT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.10, C:0.43, G:0.21, T:0.26
Consensus pattern (27 bp):
TGGTGCCGCCAACCTGCTTCCCTCCAC
Found at i:47615340 original size:28 final size:29
Alignment explanation
Indices: 47615306--47615375 Score: 117
Period size: 28 Copynumber: 2.5 Consensus size: 29
47615296 TTTGTTTTTG
47615306 ATATATTTTGGTAAATAAAAAAAA-TTAT
1 ATATATTTTGGTAAATAAAAAAAAGTTAT
47615334 ATATATTTTGGTAAATAAAAAAAAGTTAT
1 ATATATTTTGGTAAATAAAAAAAAGTTAT
*
47615363 A-ACATTTTGGTAA
1 ATATATTTTGGTAA
47615376 TTTTTTATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
28 35 0.88
29 5 0.12
ACGTcount: A:0.50, C:0.01, G:0.10, T:0.39
Consensus pattern (29 bp):
ATATATTTTGGTAAATAAAAAAAAGTTAT
Found at i:47616143 original size:3 final size:3
Alignment explanation
Indices: 47616137--47616166 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
47616127 ATAGTATAGG
47616137 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
47616167 GAAATCCTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:47617855 original size:22 final size:22
Alignment explanation
Indices: 47617830--47617879 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
47617820 CCGTTTTTTA
* *
47617830 AAAATT-AAATTATATTTTTATT
1 AAAATTAAAACTA-ATTGTTATT
47617852 AAAATTAAAACTAATTGTTATT
1 AAAATTAAAACTAATTGTTATT
47617874 AAAATT
1 AAAATT
47617880 TTATCAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 20 0.80
23 5 0.20
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (22 bp):
AAAATTAAAACTAATTGTTATT
Found at i:47620159 original size:20 final size:20
Alignment explanation
Indices: 47620134--47620171 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
47620124 TGCACGGGGA
47620134 AAGGGGAAACGGGAAATGGG
1 AAGGGGAAACGGGAAATGGG
*
47620154 AAGGGGAAATGGGAAATG
1 AAGGGGAAACGGGAAATG
47620172 TAATAATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.03, G:0.47, T:0.08
Consensus pattern (20 bp):
AAGGGGAAACGGGAAATGGG
Found at i:47620162 original size:13 final size:13
Alignment explanation
Indices: 47620129--47620168 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
47620119 TCAGATGCAC
*
47620129 GGGGAAAGGGGAAA
1 GGGGAAATGGG-AA
*
47620143 CGGGAAATGGGAA
1 GGGGAAATGGGAA
47620156 GGGGAAATGGGAA
1 GGGGAAATGGGAA
47620169 ATGTAATAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
13 14 0.61
14 9 0.39
ACGTcount: A:0.40, C:0.03, G:0.53, T:0.05
Consensus pattern (13 bp):
GGGGAAATGGGAA
Found at i:47620170 original size:7 final size:7
Alignment explanation
Indices: 47620130--47620171 Score: 50
Period size: 7 Copynumber: 6.1 Consensus size: 7
47620120 CAGATGCACG
*
47620130 GGGAAAG
1 GGGAAAT
*
47620137 GGGAAAC
1 GGGAAAT
47620144 GGGAAAT
1 GGGAAAT
*
47620151 GGG-AAG
1 GGGAAAT
47620157 GGGAAAT
1 GGGAAAT
47620164 GGGAAAT
1 GGGAAAT
47620171 G
1 G
47620172 TAATAATATA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
6 5 0.17
7 25 0.83
ACGTcount: A:0.40, C:0.02, G:0.50, T:0.07
Consensus pattern (7 bp):
GGGAAAT
Found at i:47621803 original size:11 final size:13
Alignment explanation
Indices: 47621787--47621820 Score: 54
Period size: 11 Copynumber: 2.8 Consensus size: 13
47621777 AATTTTACGA
47621787 AAAAATTTCG-T-
1 AAAAATTTCGTTC
47621798 AAAAATTTCGTTC
1 AAAAATTTCGTTC
47621811 AAAAATTTCG
1 AAAAATTTCG
47621821 ACGTTTGGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 10 0.48
12 1 0.05
13 10 0.48
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.35
Consensus pattern (13 bp):
AAAAATTTCGTTC
Found at i:47625341 original size:6 final size:6
Alignment explanation
Indices: 47625330--47625355 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
47625320 AGCTTTCTAA
47625330 TATAAT TATAAT TATAAT TATAAT TA
1 TATAAT TATAAT TATAAT TATAAT TA
47625356 ATATAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
TATAAT
Found at i:47628478 original size:3 final size:3
Alignment explanation
Indices: 47628472--47628500 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
47628462 TTTTTTTTTC
47628472 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
47628501 TAACTAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:47628638 original size:16 final size:15
Alignment explanation
Indices: 47628617--47628646 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
47628607 TTTTGAAGCT
47628617 AAAAAAAACAGCAAAC
1 AAAAAAAA-AGCAAAC
47628633 AAAAAAAAAGCAAA
1 AAAAAAAAAGCAAA
47628647 AAGCACAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.80, C:0.13, G:0.07, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAGCAAAC
Found at i:47629459 original size:76 final size:76
Alignment explanation
Indices: 47629370--47629734 Score: 361
Period size: 76 Copynumber: 4.9 Consensus size: 76
47629360 GAGTACATTG
* *
47629370 AATATGAA-GGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCGGATTCCA
1 AATATAAAGGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCA
47629434 CCGTATCTTTA
66 CCGTATCTTTA
* *
47629445 AATATAAAGGGGGTTGCTAAGTGCTGATT-CCC--C-CA-AGG-GGTTGCTAAGTGTTGATTCC-
1 AATATAAAGGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCA
47629503 CCG-A---TT-
66 CCGTATCTTTA
* *
47629509 CAT-T---GGTGGTTGCTAAGTGCTGATTCCACCGTATCTTTAAATTCATTGGTGGTTGCTAAGT
1 AATATAAAGGGGGTTGCTAAGTGCTGATTCC-CCG-A-C-------TCATTGGTGGTTGCTAAGT
47629570 GCTGATTCCACCGTATCTTTA
56 GCTGATTCCACCGTATCTTTA
* * * *
47629591 AATGTGAAGGGGGTTGCTAAGTGCTGATTCCCCGAATAATTGGTGGTTGCTAAGTGCTGATTCCA
1 AATATAAAGGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCA
* *
47629656 CCATATCTTTG
66 CCGTATCTTTA
* * * *
47629667 AATGTGAAA-GGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGAATCC
1 AATAT-AAAGGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCC
47629731 ACCG
65 ACCG
47629735 ATAACGGTTA
Statistics
Matches: 243, Mismatches: 19, Indels: 55
0.77 0.06 0.17
Matches are distributed among these distances:
60 20 0.08
61 1 0.00
62 2 0.01
63 1 0.00
64 2 0.01
65 2 0.01
66 1 0.00
68 1 0.00
69 3 0.01
70 18 0.07
71 2 0.01
72 2 0.01
73 1 0.00
74 2 0.01
75 12 0.05
76 136 0.56
77 5 0.02
78 1 0.00
81 2 0.01
82 2 0.01
83 1 0.00
84 1 0.00
85 3 0.01
86 22 0.09
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (76 bp):
AATATAAAGGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCA
CCGTATCTTTA
Found at i:47629563 original size:103 final size:103
Alignment explanation
Indices: 47629376--47629578 Score: 336
Period size: 103 Copynumber: 2.0 Consensus size: 103
47629366 ATTGAATATG
47629376 AAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCGGATTCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCGGATTCCACCGTATC
47629441 TTTAAATATAAAGGGGGTTGCTAAGTGCTGATTCCCCC
66 TTTAAATATAAAGGGGGTTGCTAAGTGCTGATTCCCCC
* * *
47629479 AAGGGGTTGCTAAGTGTTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCGGATTCCACCGTATC
** *
47629544 TTTAAAT-TCATTGGTGGTTGCTAAGTGCTGATTCC
66 TTTAAATAT-AAAGGGGGTTGCTAAGTGCTGATTCC
47629579 ACCGTATCTT
Statistics
Matches: 93, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
102 1 0.01
103 92 0.99
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.33
Consensus pattern (103 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCGGATTCCACCGTATC
TTTAAATATAAAGGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:47629567 original size:43 final size:43
Alignment explanation
Indices: 47629506--47629697 Score: 201
Period size: 43 Copynumber: 4.7 Consensus size: 43
47629496 TGATTCCCCG
47629506 ATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTTTAA
1 ATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTTTAA
47629549 ATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTTTAA
1 ATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTTTAA
* * *
47629592 ATGTGA-AGGGGGTTGCTAAGTGCTGATTCC-CCG--------A
1 AT-TCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTTTAA
* * *
47629626 A-TAATTGGTGGTTGCTAAGTGCTGATTCCACCATATCTTTGA
1 ATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTTTAA
* **
47629668 ATGTGAAAGG-GGTTGCTAAGTGCTGATTCC
1 AT-TCATTGGTGGTTGCTAAGTGCTGATTCC
47629698 CCGAATCACT
Statistics
Matches: 126, Mismatches: 10, Indels: 26
0.78 0.06 0.16
Matches are distributed among these distances:
32 2 0.02
33 22 0.17
34 4 0.03
42 5 0.04
43 87 0.69
44 6 0.05
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (43 bp):
ATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTTTAA
Found at i:47629692 original size:119 final size:119
Alignment explanation
Indices: 47629481--47629697 Score: 346
Period size: 119 Copynumber: 1.8 Consensus size: 119
47629471 ATTCCCCCAA
* * * *
47629481 GGGGTTGCTAAGTGTTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATAATTGGTGGTTGCTAAGTGCTGATTCCACCATATCTT
**
47629546 TAAATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTTTAAATGTGAAG
66 TAAATTCAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCTTTAAATGTGAAG
47629600 GGGGTTGCTAAGTGCTGATTCCCCGAATAATTGGTGGTTGCTAAGTGCTGATTCCACCATATCTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATAATTGGTGGTTGCTAAGTGCTGATTCCACCATATCTT
* *
47629665 TGAATGTGAAAGG-GGTTGCTAAGTGCTGATTCC
66 TAAAT-TCAAAGGTGGTTGCTAAGTGCTGATTCC
47629698 CCGAATCACT
Statistics
Matches: 89, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
119 85 0.96
120 4 0.04
ACGTcount: A:0.21, C:0.18, G:0.27, T:0.35
Consensus pattern (119 bp):
GGGGTTGCTAAGTGCTGATTCCCCGAATAATTGGTGGTTGCTAAGTGCTGATTCCACCATATCTT
TAAATTCAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCTTTAAATGTGAAG
Found at i:47637755 original size:12 final size:13
Alignment explanation
Indices: 47637700--47637757 Score: 50
Period size: 12 Copynumber: 4.4 Consensus size: 13
47637690 ATAGTGAGTT
47637700 ACACGGCCTGA-C
1 ACACGGCCTGACC
*
47637712 ACACGACCGTGTGACTC
1 ACACGGCC---TGAC-C
47637729 ACACGGCCT-ACC
1 ACACGGCCTGACC
47637741 ACACGGCCTGA-C
1 ACACGGCCTGACC
47637753 ACACG
1 ACACG
47637758 ATCGTGTGAC
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
12 23 0.61
13 3 0.08
14 1 0.03
15 3 0.08
17 8 0.21
ACGTcount: A:0.26, C:0.41, G:0.22, T:0.10
Consensus pattern (13 bp):
ACACGGCCTGACC
Found at i:47640955 original size:24 final size:25
Alignment explanation
Indices: 47640903--47640949 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
47640893 TGACCCTCTT
* *
47640903 GAGCTTCCCGTTATATGGTTCTTGC
1 GAGCTTCCCGTTATATAGCTCTTGC
47640928 GAGCTTCCCGTTA-ATAGCTCTT
1 GAGCTTCCCGTTATATAGCTCTT
47640950 TGGAGCATCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.15, C:0.26, G:0.21, T:0.38
Consensus pattern (25 bp):
GAGCTTCCCGTTATATAGCTCTTGC
Found at i:47648003 original size:10 final size:10
Alignment explanation
Indices: 47647984--47648053 Score: 61
Period size: 10 Copynumber: 6.6 Consensus size: 10
47647974 AAATCTATCG
*
47647984 AAAA-TAATC
1 AAAATTAATT
*
47647993 AAAATTAATC
1 AAAATTAATT
47648003 AAAATTAATTAT
1 AAAATTAA-T-T
47648015 AAAATTAATT
1 AAAATTAATT
*
47648025 AAAATTCAACATG
1 AAAATT--A-ATT
47648038 AAAATTAATT
1 AAAATTAATT
47648048 AAAATT
1 AAAATT
47648054 CAACATGCTA
Statistics
Matches: 52, Mismatches: 3, Indels: 11
0.79 0.05 0.17
Matches are distributed among these distances:
9 4 0.08
10 28 0.54
11 3 0.06
12 9 0.17
13 8 0.15
ACGTcount: A:0.60, C:0.06, G:0.01, T:0.33
Consensus pattern (10 bp):
AAAATTAATT
Found at i:47648072 original size:23 final size:23
Alignment explanation
Indices: 47647993--47648060 Score: 95
Period size: 23 Copynumber: 3.0 Consensus size: 23
47647983 GAAAATAATC
* *
47647993 AAAATTAATCAAAATT-AATTAT-
1 AAAATTAATTAAAATTCAA-CATG
47648015 AAAATTAATTAAAATTCAACATG
1 AAAATTAATTAAAATTCAACATG
47648038 AAAATTAATTAAAATTCAACATG
1 AAAATTAATTAAAATTCAACATG
47648061 CTAATAATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
22 17 0.40
23 25 0.60
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.32
Consensus pattern (23 bp):
AAAATTAATTAAAATTCAACATG
Found at i:47652237 original size:20 final size:20
Alignment explanation
Indices: 47652212--47652251 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
47652202 CGTAAAATGA
*
47652212 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
47652232 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
47652252 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:47652328 original size:32 final size:32
Alignment explanation
Indices: 47652242--47652329 Score: 90
Period size: 33 Copynumber: 2.7 Consensus size: 32
47652232 TTTCTGTAAA
* *
47652242 ATGATTTACTGGAAAATATTTTCTGGTGTTTGG
1 ATGATTTCCT-GAAAATATTTTCTGCTGTTTGG
* *
47652275 ATGA-ATCTGTGTAAAATATTTTCTGCTGTTTGG
1 ATGATTTC-CTG-AAAATATTTTCTGCTGTTTGG
47652308 CA-GATTTCCTGAAAATATTTTC
1 -ATGATTTCCTGAAAATATTTTC
47652330 CGGAAAAGTT
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
32 13 0.29
33 29 0.64
34 3 0.07
ACGTcount: A:0.26, C:0.10, G:0.19, T:0.44
Consensus pattern (32 bp):
ATGATTTCCTGAAAATATTTTCTGCTGTTTGG
Found at i:47656702 original size:62 final size:63
Alignment explanation
Indices: 47656635--47656775 Score: 169
Period size: 62 Copynumber: 2.3 Consensus size: 63
47656625 ATAATTTTTA
* * * * *
47656635 ATTTTTAGAGTTAGGACT-AAATAGACAGATTTTATAAATATTGAGGGCTAAAATTATTGATTT
1 ATTTTTATAATTAGGACTAAAAT-GAAAAATTTTATAAACATTGAGGGCTAAAATTATTGATTT
* * * *
47656698 -TTTTTATAATTAGAACTAAAATGAAAAATTTTGTAAACATTGAGGGCTAAATTTATTTATTT
1 ATTTTTATAATTAGGACTAAAATGAAAAATTTTATAAACATTGAGGGCTAAAATTATTGATTT
*
47656760 ATTTTTATATTTAGGA
1 ATTTTTATAATTAGGA
47656776 TCCAATTAAT
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
62 48 0.74
63 17 0.26
ACGTcount: A:0.38, C:0.04, G:0.14, T:0.43
Consensus pattern (63 bp):
ATTTTTATAATTAGGACTAAAATGAAAAATTTTATAAACATTGAGGGCTAAAATTATTGATTT
Found at i:47658040 original size:14 final size:15
Alignment explanation
Indices: 47658009--47658041 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
47657999 GTTGAGATAT
*
47658009 TAGTTTTTAAAAATA
1 TAGTTTATAAAAATA
47658024 TAGTTTATAAAAA-A
1 TAGTTTATAAAAATA
47658038 TAGT
1 TAGT
47658042 CCCTAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (15 bp):
TAGTTTATAAAAATA
Found at i:47662700 original size:55 final size:55
Alignment explanation
Indices: 47662539--47662754 Score: 226
Period size: 55 Copynumber: 3.9 Consensus size: 55
47662529 TCGTGTCCCC
* * *
47662539 TATTTTC-AGATTTTATAAATTTT-CCCTCATTTTTTAAATTTTACAATTTTTCCCT-
1 TATTTTCTAGATTTTA-AAGTTTTACCCT-ATTTTTTAGATTTTACAA-TTTTGCCTA
* *
47662594 TATTTT-TCAAATTTTATAA-TTTTACCTCTATTTTCTAGATTTTACAATTTTGCCTA
1 TATTTTCT-AGATTTTA-AAGTTTTACC-CTATTTTTTAGATTTTACAATTTTGCCTA
* * * * * *
47662650 TGTTTTGTAGATTTTAAAGTTTTGCCCTATTTTTTAGATTTTGCAGTTTTGCCTC
1 TATTTTCTAGATTTTAAAGTTTTACCCTATTTTTTAGATTTTACAATTTTGCCTA
*
47662705 TATTTTCTAGATTTTATAGTTTTACCCTTATTTTTTAGATTTTACAATTT
1 TATTTTCTAGATTTTAAAGTTTTACCC-TATTTTTTAGATTTTACAATTT
47662755 CCCCCTACTT
Statistics
Matches: 136, Mismatches: 17, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
55 67 0.49
56 66 0.49
57 3 0.02
ACGTcount: A:0.23, C:0.13, G:0.07, T:0.56
Consensus pattern (55 bp):
TATTTTCTAGATTTTAAAGTTTTACCCTATTTTTTAGATTTTACAATTTTGCCTA
Found at i:47662760 original size:28 final size:27
Alignment explanation
Indices: 47662541--47662754 Score: 182
Period size: 28 Copynumber: 7.7 Consensus size: 27
47662531 GTGTCCCCTA
* * *
47662541 TTTTCAGATTTTATAAATTTTCCCTCAT
1 TTTTTAGATTTTA-CAATTTTCCCTTAT
*
47662569 TTTTTAAATTTTACAATTTTTCCCTTAT
1 TTTTTAGATTTTACAA-TTTTCCCTTAT
* * * *
47662597 TTTTCAAATTTTATAATTTTACCTCTAT
1 TTTTTAGATTTTACAATTTTCCCT-TAT
* *
47662625 TTTCTAGATTTTACAATTTTGCC-TAT
1 TTTTTAGATTTTACAATTTTCCCTTAT
47662651 GTTTTGTAGATTTTA-AAGTTTTGCCC-TAT
1 -TTTT-TAGATTTTACAA-TTTT-CCCTTAT
* * *
47662680 TTTTTAGATTTTGCAGTTTTGCCTCTAT
1 TTTTTAGATTTTACAATTTTCCCT-TAT
* * *
47662708 TTTCTAGATTTTATAGTTTTACCCTTAT
1 TTTTTAGATTTTACAATTTT-CCCTTAT
47662736 TTTTTAGATTTTACAATTT
1 TTTTTAGATTTTACAATTT
47662755 CCCCCTACTT
Statistics
Matches: 152, Mismatches: 24, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
26 5 0.03
27 26 0.17
28 113 0.74
29 8 0.05
ACGTcount: A:0.23, C:0.14, G:0.07, T:0.57
Consensus pattern (27 bp):
TTTTTAGATTTTACAATTTTCCCTTAT
Found at i:47662761 original size:83 final size:83
Alignment explanation
Indices: 47662538--47662772 Score: 253
Period size: 83 Copynumber: 2.8 Consensus size: 83
47662528 GTCGTGTCCC
* * * *
47662538 CTATTTTC-AGATTTTATAAATTTTCCCTCATTTTTTAAATTTTACAATTTTTCCCTTATTTTTC
1 CTATTTTCTAGATTTTAT-AATTTTCCCTTATTTTTTAGATTTTACAAGTTTTCCCCTATTTTTC
*
47662602 AAATTTTATAATTTTACCT
65 AAATTTTACAATTTTACCT
* * *
47662621 CTATTTTCTAGATTTTACAATTTTGCC-TATGTTTTGTAGATTTTA-AAGTTTTGCCCTATTTTT
1 CTATTTTCTAGATTTTATAATTTTCCCTTAT-TTTT-TAGATTTTACAAGTTTTCCCCTATTTTT
* * * * *
47662684 TAGATTTTGCAGTTTTGCCT
64 CAAATTTTACAATTTTACCT
* * * *
47662704 CTATTTTCTAGATTTTATAGTTTTACCCTTATTTTTTAGATTTTACAA-TTTCCCCCTACTTTAC
1 CTATTTTCTAGATTTTATAATTTT-CCCTTATTTTTTAGATTTTACAAGTTTTCCCCTATTTTTC
47662768 AAATT
65 AAATT
47662773 ACAACTTTGC
Statistics
Matches: 124, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
82 2 0.02
83 95 0.77
84 24 0.19
85 3 0.02
ACGTcount: A:0.23, C:0.16, G:0.06, T:0.54
Consensus pattern (83 bp):
CTATTTTCTAGATTTTATAATTTTCCCTTATTTTTTAGATTTTACAAGTTTTCCCCTATTTTTCA
AATTTTACAATTTTACCT
Found at i:47663359 original size:43 final size:43
Alignment explanation
Indices: 47663278--47663497 Score: 108
Period size: 43 Copynumber: 4.9 Consensus size: 43
47663268 CCTTTAACTA
* * *
47663278 CAAATATGTTGTACATCTACAACCCA-TCGACA-ACTTTTACCTG
1 CAAATATGTTGTGCATCTACAGCCCAGT-GGCAGA-TTTTACCTG
*
47663321 CAAATATGTTGTGCATCTACAGCCCAGTGGCAGATTTTATCTG
1 CAAATATGTTGTGCATCTACAGCCCAGTGGCAGATTTTACCTG
* * * * *
47663364 C-GATATTTTGCTATGCACCCACAGCCTAGTGGC-GATGTTTATCCTTTAATTG
1 CAAATATGTTG---TGCATCTACAGCCCAGTGGCAGAT-TTTA-CC------TG
* * * * * *
47663416 CAAATATGTTTTACATCCACAACCCA-TCGCCAGCTTTTACCTG
1 CAAATATGTTGTGCATCTACAGCCCAGT-GGCAGATTTTACCTG
* * **
47663459 CAAATATATTATGCATCTATTGCCCAGTGGCAGATTTTA
1 CAAATATGTTGTGCATCTACAGCCCAGTGGCAGATTTTA
47663498 TCTGTGATAT
Statistics
Matches: 132, Mismatches: 28, Indels: 34
0.68 0.14 0.18
Matches are distributed among these distances:
42 7 0.05
43 66 0.50
44 6 0.05
45 21 0.16
46 1 0.01
49 3 0.02
50 17 0.13
51 2 0.02
52 3 0.02
53 6 0.05
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (43 bp):
CAAATATGTTGTGCATCTACAGCCCAGTGGCAGATTTTACCTG
Found at i:47663487 original size:138 final size:138
Alignment explanation
Indices: 47663239--47663544 Score: 434
Period size: 138 Copynumber: 2.2 Consensus size: 138
47663229 AAATTTGTTG
* *
47663239 TGCACCCACAACCCAGTGGCAATTTTCATCCTTTAACTACAAATATGTTGTACATCTACAACCCA
1 TGCACCCACAACCTAGTGGCAATTTTCATCCTTTAACTACAAATATGTTGTACATCCACAACCCA
* *
47663304 TCGACAACTTTTACCTGCAAATATGTTGTGCATCTACAGCCCAGTGGCAGATTTTATCTGCGATA
66 TCGACAACTTTTACCTGCAAATATATTATGCATCTACAGCCCAGTGGCAGATTTTATCTGCGATA
47663369 TTTTGCTA
131 TTTTGCTA
* * * * *
47663377 TGCACCCACAGCCTAGTGGCGATGTTT-ATCCTTTAATTGCAAATATGTTTTACATCCACAACCC
1 TGCACCCACAACCTAGTGGCAAT-TTTCATCCTTTAACTACAAATATGTTGTACATCCACAACCC
* * ** *
47663441 ATCGCCAGCTTTTACCTGCAAATATATTATGCATCTATTGCCCAGTGGCAGATTTTATCTGTGAT
65 ATCGACAACTTTTACCTGCAAATATATTATGCATCTACAGCCCAGTGGCAGATTTTATCTGCGAT
*
47663506 ATTTTGCTG
130 ATTTTGCTA
* **
47663515 TGTACCCACAACCTAGTGGCAGGTTTCATC
1 TGCACCCACAACCTAGTGGCAATTTTCATC
47663545 TATGAATTTT
Statistics
Matches: 146, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
137 3 0.02
138 140 0.96
139 3 0.02
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.33
Consensus pattern (138 bp):
TGCACCCACAACCTAGTGGCAATTTTCATCCTTTAACTACAAATATGTTGTACATCCACAACCCA
TCGACAACTTTTACCTGCAAATATATTATGCATCTACAGCCCAGTGGCAGATTTTATCTGCGATA
TTTTGCTA
Found at i:47663535 original size:45 final size:45
Alignment explanation
Indices: 47663481--47663588 Score: 119
Period size: 45 Copynumber: 2.4 Consensus size: 45
47663471 GCATCTATTG
* *
47663481 CCCAGTGGCAGATTTTATCTGTG-ATATTTTGCTGTGTACCCACAA
1 CCCAGTGGCAGATTTTATCTATGAAT-TTTTACTGTGTACCCACAA
* * * * * *
47663526 CCTAGTGGCAGGTTTCATCTATGAATTTTTACTTTGTATCCACAG
1 CCCAGTGGCAGATTTTATCTATGAATTTTTACTGTGTACCCACAA
*
47663571 CCCAGTGGAAGATTTTAT
1 CCCAGTGGCAGATTTTAT
47663589 TTGCAAAACT
Statistics
Matches: 50, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
45 48 0.96
46 2 0.04
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.37
Consensus pattern (45 bp):
CCCAGTGGCAGATTTTATCTATGAATTTTTACTGTGTACCCACAA
Found at i:47665818 original size:18 final size:20
Alignment explanation
Indices: 47665776--47665823 Score: 64
Period size: 18 Copynumber: 2.5 Consensus size: 20
47665766 TTTATGAAGT
*
47665776 TTTTAAAATTATTTTTAATA
1 TTTTAAAATTATTTTTAAGA
47665796 TTTTAAAATTA-TTTT-AGA
1 TTTTAAAATTATTTTTAAGA
*
47665814 TTTTAGAATT
1 TTTTAAAATT
47665824 TTACTTAAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 11 0.42
19 4 0.15
20 11 0.42
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (20 bp):
TTTTAAAATTATTTTTAAGA
Found at i:47668101 original size:25 final size:23
Alignment explanation
Indices: 47668073--47668146 Score: 60
Period size: 25 Copynumber: 3.0 Consensus size: 23
47668063 CTTGTTTGGT
47668073 CTTACCGTTACTCAGCTCGCATGAG
1 CTTACCGTTA-TCAGCTCG-ATGAG
** * *
47668098 CTTATCATTTTTCAGCTCGAAGAAG
1 CTTA-CCGTTATCAGCTCGATG-AG
47668123 CTTACCGTTA-CAGCTCGTATGAG
1 CTTACCGTTATCAGCTCG-ATGAG
47668146 C
1 C
47668147 ATACATGTAC
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
23 10 0.26
24 7 0.18
25 18 0.47
26 3 0.08
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (23 bp):
CTTACCGTTATCAGCTCGATGAG
Found at i:47671039 original size:36 final size:38
Alignment explanation
Indices: 47670966--47671058 Score: 106
Period size: 36 Copynumber: 2.6 Consensus size: 38
47670956 TAGATCTTCC
* * *
47670966 CAAG-CTCCTGAAAGAGATAT-TAGGTATTCTTAGTCT
1 CAAGACTCCTGAATGAGATATCTAGGTATTCTCAATCT
*
47671002 CAA-ACTCCTGAATGAGATATCTA-GTCTTCTCAATCT
1 CAAGACTCCTGAATGAGATATCTAGGTATTCTCAATCT
*
47671038 CAAGA-TCCTGAATAAGATATC
1 CAAGACTCCTGAATGAGATATC
47671059 GAGTTTTCCC
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
36 46 0.94
37 3 0.06
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.31
Consensus pattern (38 bp):
CAAGACTCCTGAATGAGATATCTAGGTATTCTCAATCT
Found at i:47676342 original size:20 final size:20
Alignment explanation
Indices: 47676317--47676355 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
47676307 TAAATATATT
*
47676317 AATATATTATTTTATTATAA
1 AATATATTATATTATTATAA
47676337 AATATATTATATTATTATA
1 AATATATTATATTATTATA
47676356 TTTTAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
AATATATTATATTATTATAA
Found at i:47676569 original size:16 final size:17
Alignment explanation
Indices: 47676548--47676580 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
47676538 AGACGAAAAA
47676548 GAAAG-AAAGGAAAGGG
1 GAAAGAAAAGGAAAGGG
47676564 GAAAGAAAAGGAAAGGG
1 GAAAGAAAAGGAAAGGG
47676581 AAAAACTAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (17 bp):
GAAAGAAAAGGAAAGGG
Found at i:47677008 original size:3 final size:3
Alignment explanation
Indices: 47677000--47677035 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
47676990 ATAGAAATTC
47677000 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
47677036 AAATTAATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:47677743 original size:21 final size:21
Alignment explanation
Indices: 47677695--47677781 Score: 95
Period size: 21 Copynumber: 4.1 Consensus size: 21
47677685 GGTTTTGCCG
* *
47677695 ATCAGGCACTTTATGTGTCGT
1 ATCAGGCACCTTGTGTGTCGT
*
47677716 ATTTCAGGCACCTCGTGTGTCGT
1 A--TCAGGCACCTTGTGTGTCGT
*
47677739 ATCAGGCACCTTGTGTGTTGT
1 ATCAGGCACCTTGTGTGTCGT
* *
47677760 TTCAGGCA-CTTATGTGTCGT
1 ATCAGGCACCTTGTGTGTCGT
47677780 AT
1 AT
47677782 ACTGATTAGG
Statistics
Matches: 55, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
20 11 0.20
21 26 0.47
23 18 0.33
ACGTcount: A:0.16, C:0.21, G:0.25, T:0.38
Consensus pattern (21 bp):
ATCAGGCACCTTGTGTGTCGT
Found at i:47678101 original size:18 final size:18
Alignment explanation
Indices: 47678078--47678115 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
47678068 TGTTATTGTT
47678078 AATTAA-TGAAAGTTTAAG
1 AATTAATTGAAA-TTTAAG
*
47678096 AATTAATTGATATTTAAG
1 AATTAATTGAAATTTAAG
47678114 AA
1 AA
47678116 ATTGGATAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (18 bp):
AATTAATTGAAATTTAAG
Found at i:47686238 original size:29 final size:26
Alignment explanation
Indices: 47686186--47686239 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
47686176 TTTAAAATAC
*
47686186 TTTTAAAATATTTTTATTTTTATTAT
1 TTTTAAAATATTTTTATGTTTATTAT
47686212 TTTTAAAATAATTTTTTAATGTTTATTA
1 TTTTAAAAT-A-TTTTT-ATGTTTATTA
47686240 AAAAATGGGC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 9 0.38
27 1 0.04
28 5 0.21
29 9 0.38
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (26 bp):
TTTTAAAATATTTTTATGTTTATTAT
Found at i:47686794 original size:31 final size:32
Alignment explanation
Indices: 47686725--47686794 Score: 81
Period size: 33 Copynumber: 2.2 Consensus size: 32
47686715 ATTTTAAAAT
*
47686725 AAAATAACACAAATGTGTTAAAATCATTAATTA
1 AAAATAACACAAATGCGTT-AAATCATTAATTA
*
47686758 AAAATAATACAAATGCGTT-AAT-ATGTAATTA
1 AAAATAACACAAATGCGTTAAATCAT-TAATTA
*
47686789 CAAATA
1 AAAATA
47686795 TTTAATGGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 2 0.06
31 14 0.42
33 17 0.52
ACGTcount: A:0.54, C:0.09, G:0.07, T:0.30
Consensus pattern (32 bp):
AAAATAACACAAATGCGTTAAATCATTAATTA
Found at i:47699358 original size:18 final size:18
Alignment explanation
Indices: 47699337--47699371 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
47699327 CTGGGTTAGG
47699337 TTTGGG-TTTAAGTTTGGT
1 TTTGGGCTTT-AGTTTGGT
47699355 TTTGGGCTTTAGTTTGG
1 TTTGGGCTTTAGTTTGG
47699372 GTACTAGGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.09, C:0.03, G:0.34, T:0.54
Consensus pattern (18 bp):
TTTGGGCTTTAGTTTGGT
Found at i:47700043 original size:21 final size:20
Alignment explanation
Indices: 47700019--47700057 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
47700009 AGGTCGTGAC
*
47700019 ATTCACTTGCTGAAGTCGCAA
1 ATTC-CTTGCTAAAGTCGCAA
*
47700040 ATTCCTTGGTAAAGTCGC
1 ATTCCTTGCTAAAGTCGC
47700058 GACACCAGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.31
Consensus pattern (20 bp):
ATTCCTTGCTAAAGTCGCAA
Found at i:47700590 original size:27 final size:27
Alignment explanation
Indices: 47700547--47700617 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
47700537 CAAGATGGTA
*
47700547 TATGCCAGCAGGCCTGGCAAAATAGTG
1 TATGCCAGCAGGTCTGGCAAAATAGTG
* ** *
47700574 TATGCCAGCAAGTCTGGTGAGATAGTG
1 TATGCCAGCAGGTCTGGCAAAATAGTG
* *
47700601 CATGCCAGTAGGTCTGG
1 TATGCCAGCAGGTCTGG
47700618 TGAGCTAGTG
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.23
Consensus pattern (27 bp):
TATGCCAGCAGGTCTGGCAAAATAGTG
Found at i:47700618 original size:27 final size:27
Alignment explanation
Indices: 47700568--47700627 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
47700558 GCCTGGCAAA
*
47700568 ATAGTGTATGCCAGCAAGTCTGGTGAG
1 ATAGTGCATGCCAGCAAGTCTGGTGAG
* *
47700595 ATAGTGCATGCCAGTAGGTCTGGTGAG
1 ATAGTGCATGCCAGCAAGTCTGGTGAG
*
47700622 CTAGTG
1 ATAGTG
47700628 TTTGATCTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.23, C:0.15, G:0.35, T:0.27
Consensus pattern (27 bp):
ATAGTGCATGCCAGCAAGTCTGGTGAG
Found at i:47709526 original size:15 final size:15
Alignment explanation
Indices: 47709501--47709538 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
47709491 GACGAAATGA
47709501 AAAAATGGAAAAAGT
1 AAAAATGGAAAAAGT
47709516 GAAAAAT-GAAAAAGT
1 -AAAAATGGAAAAAGT
47709531 -AAAATGGA
1 AAAAATGGA
47709539 GAGGCTAAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 5 0.24
14 2 0.10
15 8 0.38
16 6 0.29
ACGTcount: A:0.66, C:0.00, G:0.21, T:0.13
Consensus pattern (15 bp):
AAAAATGGAAAAAGT
Found at i:47710840 original size:44 final size:43
Alignment explanation
Indices: 47710785--47711293 Score: 329
Period size: 44 Copynumber: 11.7 Consensus size: 43
47710775 AGATGGCAAG
47710785 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCGACAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAA-CGACAA
* * * * *
47710829 TCCTATCTCCCTGAAATTACAGTGGAGCGGATTAAAATC-TCAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAA-CGACAA
** * * *** * * *
47710872 GTCTTATCTTTCTGAAGTTGCAG-AGAGCATATCGCATC--TAG
1 -TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACGACAA
* *
47710913 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAGTAA-G-CAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA-AAACGACAA
* * *
47710956 GTCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGATTGAAGATGGCAAA
1 -TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGATT-AAAACGAC-AA
*
47711002 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACCGACAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAA-CGACAA
* *
47711046 TCCTATCTCCCTGAAGTTGCAGTGGAG-AGGATTAAAATC-TCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCA-GATTAAAA-CGACA-A
* * * *
47711090 TCTTATCTCTCTGAAGTTGC--T-GAG-AG--CAAATCGTATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACG-A-C-AA
* *
47711130 TCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTAAGTAA-G-CAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA--AACGACAA
* * * *
47711173 GTCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAGATGGCAAA
1 -TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAAAACGAC-AA
*
47711219 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAACCGACAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAA-CGACAA
* *
47711263 TCCTATCTCTCTGAAGTTGCAGTGGAGCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
47711294 CTAATGAGGT
Statistics
Matches: 362, Mismatches: 64, Indels: 78
0.72 0.13 0.15
Matches are distributed among these distances:
37 1 0.00
38 3 0.01
40 41 0.11
41 12 0.03
42 4 0.01
43 26 0.07
44 201 0.56
45 60 0.17
46 12 0.03
47 1 0.00
48 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (43 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACGACAA
Found at i:47711134 original size:173 final size:173
Alignment explanation
Indices: 47710955--47711282 Score: 402
Period size: 173 Copynumber: 1.9 Consensus size: 173
47710945 TGAGTAAGCA
* * *
47710955 AGTCTTATC-CTCCTGAAGTTGCAGTGAGGCAGATTGAAG-ATGGCAAATCTTAT-CTCCCTAAA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGAAGCAGACT-AAGTA-AGCAAATCTTATCCT-CCTAAA
* *
47711017 GTTGCAGTG-GAGCAGA-TTAAAACCGAC-AATCCTATCTCCCTGAAGTTGCAGTGGAG-AGGAT
62 GTTGCAGTGAG-GCAGACTGAAAA-CGACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCA-AAT
* * *
47711078 TAAAATC-TCAGATCTTATCTCTCTGAAGTTGCTGAGAGCAAATCGTATCT
124 TAAAACCGACA-ATCCTATCTCTCTGAAGTTGCTGAGAGCAAATCGTATCT
* *
47711128 AGTCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTG
1 AGTCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTAAGTAAGCAAATCTTATCCTCCTAAAGTTG
* * * *
47711193 CAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAACC
66 CAGTGAGGCAGACTGAAAACGACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAACC
47711258 GACAATCCTATCTCTCTGAAGTTGC
131 GACAATCCTATCTCTCTGAAGTTGC
47711283 AGTGGAGCAG
Statistics
Matches: 133, Mismatches: 14, Indels: 16
0.82 0.09 0.10
Matches are distributed among these distances:
172 34 0.26
173 95 0.71
174 4 0.03
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (173 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTAAGTAAGCAAATCTTATCCTCCTAAAGTTG
CAGTGAGGCAGACTGAAAACGACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAACC
GACAATCCTATCTCTCTGAAGTTGCTGAGAGCAAATCGTATCT
Found at i:47711148 original size:217 final size:217
Alignment explanation
Indices: 47710766--47711289 Score: 897
Period size: 217 Copynumber: 2.4 Consensus size: 217
47710756 CGACAGCGGA
* *
47710766 GCAGATCGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCGACAATC
1 GCAGATTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCGACAATC
* * * *
47710831 CTATCTCCCTGAAATTACAGTGGAGCGGATTAAAATCTCAAGTCTTATCTTTCTGAAGTTGCAGA
66 CTATCTCCCTGAAGTTGCAGTGGAGAGGATTAAAATCTCAAGTCTTATCTCTCTGAAGTTGCAGA
* * *
47710896 GAGCATATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAGTAAGCAAGTCTT
131 GAGCAAATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTAAGTAAGCAAGTCTT
47710961 ATCCTCCTGAAGTTGCAGTGAG
196 ATCCTCCTGAAGTTGCAGTGAG
*
47710983 GCAGATTGAAGATGGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAACCGACAATC
1 GCAGATTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCGACAATC
*
47711048 CTATCTCCCTGAAGTTGCAGTGGAGAGGATTAAAATCTC-AGATCTTATCTCTCTGAAGTTGCTG
66 CTATCTCCCTGAAGTTGCAGTGGAGAGGATTAAAATCTCAAG-TCTTATCTCTCTGAAGTTGCAG
*
47711112 AGAGCAAATCGTATCTAGTCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTAAGTAAGCAAGTCT
130 AGAGCAAATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTAAGTAAGCAAGTCT
47711177 TATCCTCCTGAAGTTGCAGTGAG
195 TATCCTCCTGAAGTTGCAGTGAG
* *
47711200 GCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAACCGACAATC
1 GCAGATTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCGACAATC
*
47711265 CTATCTCTCTGAAGTTGCAGTGGAG
66 CTATCTCCCTGAAGTTGCAGTGGAG
47711290 CAGACTAATG
Statistics
Matches: 290, Mismatches: 16, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
216 2 0.01
217 288 0.99
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (217 bp):
GCAGATTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCGACAATC
CTATCTCCCTGAAGTTGCAGTGGAGAGGATTAAAATCTCAAGTCTTATCTCTCTGAAGTTGCAGA
GAGCAAATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTAAGTAAGCAAGTCTT
ATCCTCCTGAAGTTGCAGTGAG
Found at i:47726193 original size:59 final size:58
Alignment explanation
Indices: 47726097--47726234 Score: 188
Period size: 59 Copynumber: 2.4 Consensus size: 58
47726087 TTGTTCATTT
* * *
47726097 GTTTCTTTTAGTGCCCAAACAAATTCAATCCTTGACATTCTGGTTA-TTGTGACTTGTG
1 GTTTCTTTTAGTGCCAAAACAAATTCAATCCTTGACATGCTGG-TAGTTGTGACTTGCG
* * *
47726155 GTTTACTTTTAGTGCCAAAACAAATTTAATTCTTGACATGCTGGTAGTTGTGGCTTGCG
1 GTTT-CTTTTAGTGCCAAAACAAATTCAATCCTTGACATGCTGGTAGTTGTGACTTGCG
*
47726214 GTTGCTTTTAGTGCCAAAACA
1 GTTTCTTTTAGTGCCAAAACA
47726235 TAGCAACTTT
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
58 23 0.32
59 48 0.68
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (58 bp):
GTTTCTTTTAGTGCCAAAACAAATTCAATCCTTGACATGCTGGTAGTTGTGACTTGCG
Found at i:47727479 original size:16 final size:17
Alignment explanation
Indices: 47727446--47727481 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
47727436 ATATTAAGAA
47727446 TTTTATTAAATTATATAT
1 TTTTATTAAA-TATATAT
47727464 TTTTATTAAA-ATATAT
1 TTTTATTAAATATATAT
47727480 TT
1 TT
47727482 AATAGTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
18 10 0.56
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTTATTAAATATATAT
Found at i:47727498 original size:26 final size:25
Alignment explanation
Indices: 47727469--47727518 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
47727459 TATATTTTTA
47727469 TTAAAATATATTTAATAGTAATTATG
1 TTAAAATATATTTAATAGT-ATTATG
* *
47727495 TTAAATTATATTTTATAGTATTAT
1 TTAAAATATATTTAATAGTATTAT
47727519 ATATTATGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (25 bp):
TTAAAATATATTTAATAGTATTATG
Found at i:47727573 original size:120 final size:114
Alignment explanation
Indices: 47727398--47727619 Score: 345
Period size: 120 Copynumber: 1.9 Consensus size: 114
47727388 AAGTATTGTG
*
47727398 GTATTATATATTATGATTTTAGTAAATTAGAATATTTAATATTAAGAATTTTATTAAATTATATA
1 GTATTATATATTATGATTTTAATAAATTAGAATATTTAATATTAAGAATTTTATTAAATTATATA
* *
47727463 TTTTTATTAAAATATATTTAATAGTAATTATGTTAAATTATATTTTATA
66 ATTTTATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATA
*
47727512 GTATTATATATTATGATTTTAATAAATTCATATAAGAATATTTAATATTAATAATTTTATTAAAT
1 GTATTATATATTATGATTTTAAT-AA---AT-T-AGAATATTTAATATTAAGAATTTTATTAAAT
*
47727577 TATATAATTTTATTAAATTATATTTAATAATAATTATGTTAAA
60 TATATAATTTTATTAAAATATATTTAATAATAATTATGTTAAA
47727620 ATATGATTAA
Statistics
Matches: 97, Mismatches: 5, Indels: 6
0.90 0.05 0.06
Matches are distributed among these distances:
114 22 0.23
115 2 0.02
118 2 0.02
119 1 0.01
120 70 0.72
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (114 bp):
GTATTATATATTATGATTTTAATAAATTAGAATATTTAATATTAAGAATTTTATTAAATTATATA
ATTTTATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATA
Found at i:47727583 original size:18 final size:18
Alignment explanation
Indices: 47727553--47727599 Score: 78
Period size: 18 Copynumber: 2.6 Consensus size: 18
47727543 ATAAGAATAT
47727553 TTAATATTA-ATAATTTTA
1 TTAA-ATTATATAATTTTA
47727571 TTAAATTATATAATTTTA
1 TTAAATTATATAATTTTA
47727589 TTAAATTATAT
1 TTAAATTATAT
47727600 TTAATAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 4 0.14
18 24 0.86
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
TTAAATTATATAATTTTA
Found at i:47727843 original size:46 final size:44
Alignment explanation
Indices: 47727767--47727852 Score: 127
Period size: 46 Copynumber: 1.9 Consensus size: 44
47727757 TATTTCATTC
*
47727767 AACCAAACACAAGAATACTATTACGCCTCTATTCCATTACAGCG
1 AACCAAACAAAAGAATACTATTACGCCTCTATTCCATTACAGCG
* *
47727811 AACCAAACAAAAGGATTACCTATTACGTCTCTATTCCATTAC
1 AACCAAACAAAA-GAATA-CTATTACGCCTCTATTCCATTAC
47727853 GCCTCTATTC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 11 0.30
45 4 0.11
46 22 0.59
ACGTcount: A:0.38, C:0.28, G:0.08, T:0.26
Consensus pattern (44 bp):
AACCAAACAAAAGAATACTATTACGCCTCTATTCCATTACAGCG
Found at i:47727853 original size:16 final size:16
Alignment explanation
Indices: 47727840--47727900 Score: 104
Period size: 16 Copynumber: 3.8 Consensus size: 16
47727830 CTATTACGTC
*
47727840 TCTATTCCATTACGCC
1 TCTATTCCATTACGCA
*
47727856 TCTATTCCATTACGCT
1 TCTATTCCATTACGCA
47727872 TCTATTCCATTACGCA
1 TCTATTCCATTACGCA
47727888 TCTATTCCATTAC
1 TCTATTCCATTAC
47727901 AGCGAACCAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.21, C:0.33, G:0.05, T:0.41
Consensus pattern (16 bp):
TCTATTCCATTACGCA
Found at i:47727868 original size:32 final size:32
Alignment explanation
Indices: 47727832--47727900 Score: 113
Period size: 32 Copynumber: 2.2 Consensus size: 32
47727822 AGGATTACCT
*
47727832 ATTACG-TCTCTATTCCATTACGCCTCTATTCC
1 ATTACGCT-TCTATTCCATTACGCATCTATTCC
47727864 ATTACGCTTCTATTCCATTACGCATCTATTCC
1 ATTACGCTTCTATTCCATTACGCATCTATTCC
47727896 ATTAC
1 ATTAC
47727901 AGCGAACCAA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
32 34 0.97
33 1 0.03
ACGTcount: A:0.22, C:0.32, G:0.06, T:0.41
Consensus pattern (32 bp):
ATTACGCTTCTATTCCATTACGCATCTATTCC
Found at i:47738424 original size:47 final size:47
Alignment explanation
Indices: 47738368--47738466 Score: 180
Period size: 47 Copynumber: 2.1 Consensus size: 47
47738358 AACCTAAAAC
**
47738368 CTAAGAAGAAAGAAAAGTTAAGCTGAATTTAAAAGAAAAATTCTAAA
1 CTAAGAAGAAAGAAAAGTTAAGCCAAATTTAAAAGAAAAATTCTAAA
47738415 CTAAGAAGAAAGAAAAGTTAAGCCAAATTTAAAAGAAAAATTCTAAA
1 CTAAGAAGAAAGAAAAGTTAAGCCAAATTTAAAAGAAAAATTCTAAA
47738462 CTAAG
1 CTAAG
47738467 TAATTTGTGG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 50 1.00
ACGTcount: A:0.58, C:0.08, G:0.14, T:0.20
Consensus pattern (47 bp):
CTAAGAAGAAAGAAAAGTTAAGCCAAATTTAAAAGAAAAATTCTAAA
Found at i:47742854 original size:6 final size:6
Alignment explanation
Indices: 47742843--47742873 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
47742833 AGACGGAGAA
47742843 AACCTC AACCTC AACCTC AACCTC AACCTC A
1 AACCTC AACCTC AACCTC AACCTC AACCTC A
47742874 TTCTCTATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.35, C:0.48, G:0.00, T:0.16
Consensus pattern (6 bp):
AACCTC
Found at i:47748034 original size:42 final size:42
Alignment explanation
Indices: 47747981--47748116 Score: 123
Period size: 42 Copynumber: 3.2 Consensus size: 42
47747971 AGGCTGCACA
* * * *
47747981 GAAGCACATAAGTGCTAAACGAAAACCCTTAAGGGTTAAA-T
1 GAAGCTCATAAGAGCTAAACGAAAACCCATAAAGGTTAAACT
* * *
47748022 GGAAGCTTATAAGAGCTGAACGGAAACCCATAAAGGTTAAACT
1 -GAAGCTCATAAGAGCTAAACGAAAACCCATAAAGGTTAAACT
* * * *
47748065 GAAGCTCAAAAGAGCTAAACTG-AAACCCAGAAGGGCTAAACT
1 GAAGCTCATAAGAGCTAAAC-GAAAACCCATAAAGGTTAAACT
* *
47748107 AAAACTCATA
1 GAAGCTCATA
47748117 TGAGTTAACT
Statistics
Matches: 76, Mismatches: 16, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
42 74 0.97
43 2 0.03
ACGTcount: A:0.45, C:0.18, G:0.20, T:0.17
Consensus pattern (42 bp):
GAAGCTCATAAGAGCTAAACGAAAACCCATAAAGGTTAAACT
Found at i:47748083 original size:21 final size:21
Alignment explanation
Indices: 47748030--47748147 Score: 96
Period size: 21 Copynumber: 5.7 Consensus size: 21
47748020 ATGGAAGCTT
* * *
47748030 ATAAGAGCTGAACGGAAACCC
1 ATAAGAGCTAAACTGAAACTC
* *
47748051 ATAA-AGGTTAAACTGAAGCTC
1 ATAAGA-GCTAAACTGAAACTC
* *
47748072 AAAAGAGCTAAACTGAAACCC
1 ATAAGAGCTAAACTGAAACTC
* * *
47748093 AGAAGGGCTAAACTAAAACTC
1 ATAAGAGCTAAACTGAAACTC
* * *
47748114 ATATGAG-TTAACTGAAGCTC
1 ATAAGAGCTAAACTGAAACTC
47748134 ATAAGAGCTAAACT
1 ATAAGAGCTAAACT
47748148 AAAAGCAAAC
Statistics
Matches: 73, Mismatches: 21, Indels: 6
0.73 0.21 0.06
Matches are distributed among these distances:
20 17 0.23
21 55 0.75
22 1 0.01
ACGTcount: A:0.45, C:0.19, G:0.19, T:0.18
Consensus pattern (21 bp):
ATAAGAGCTAAACTGAAACTC
Found at i:47751331 original size:98 final size:98
Alignment explanation
Indices: 47751161--47751357 Score: 376
Period size: 98 Copynumber: 2.0 Consensus size: 98
47751151 GTGCAATAAA
47751161 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
* *
47751226 CCTCTAAAATCCCAAACTTGGAATATTTCCTTT
66 CCACTAAAATCCCAAACTCGGAATATTTCCTTT
47751259 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
47751324 CCACTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCACTAAAATCCCAAACTCGGAATATTTCCTTT
47751357 A
1 A
47751358 TTATTTTTTT
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
98 97 1.00
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.27
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
CCACTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:47751734 original size:23 final size:23
Alignment explanation
Indices: 47751708--47751777 Score: 58
Period size: 23 Copynumber: 3.2 Consensus size: 23
47751698 TGGCATGCAA
47751708 AATATCAAATAAATGGGCAAGAT
1 AATATCAAATAAATGGGCAAGAT
* * * **
47751731 AATA-AAAATATAT---AAACCT
1 AATATCAAATAAATGGGCAAGAT
47751750 AAATATCAAATAAATGGGCAAGAT
1 -AATATCAAATAAATGGGCAAGAT
47751774 AATA
1 AATA
47751778 AAAATATATA
Statistics
Matches: 32, Mismatches: 10, Indels: 10
0.62 0.19 0.19
Matches are distributed among these distances:
19 3 0.09
20 4 0.12
21 7 0.22
22 7 0.22
23 8 0.25
24 3 0.09
ACGTcount: A:0.57, C:0.09, G:0.11, T:0.23
Consensus pattern (23 bp):
AATATCAAATAAATGGGCAAGAT
Found at i:47751754 original size:43 final size:43
Alignment explanation
Indices: 47751707--47751796 Score: 180
Period size: 43 Copynumber: 2.1 Consensus size: 43
47751697 ATGGCATGCA
47751707 AAATATCAAATAAATGGGCAAGATAATAAAAATATATAAACCT
1 AAATATCAAATAAATGGGCAAGATAATAAAAATATATAAACCT
47751750 AAATATCAAATAAATGGGCAAGATAATAAAAATATATAAACCT
1 AAATATCAAATAAATGGGCAAGATAATAAAAATATATAAACCT
47751793 AAAT
1 AAAT
47751797 CAATGGACAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.59, C:0.09, G:0.09, T:0.23
Consensus pattern (43 bp):
AAATATCAAATAAATGGGCAAGATAATAAAAATATATAAACCT
Found at i:47753648 original size:44 final size:44
Alignment explanation
Indices: 47753600--47753886 Score: 215
Period size: 44 Copynumber: 6.6 Consensus size: 44
47753590 CAATCTGCCT
*
47753600 CACTGCAACTTCAGGAG-GATAAGACTCGCTTATTTAGTCTGCTC
1 CACTGCAACTTCAGGAGAGATAAGACTTG-TTATTTAGTCTGCTC
* ** *
47753644 CACTGCAACTTCAGG-GAGATAAGACTAG--A-TGCGATCTG-TT
1 CACTGCAACTTCAGGAGAGATAAGACTTGTTATTTAG-TCTGCTC
* * * * *
47753684 CTCTGCAACTTCA-GAGAGATAAGATCTAAGGT-TTTAATCCGCTC
1 CACTGCAACTTCAGGAGAGATAAGA-CT-TGTTATTTAGTCTGCTC
* * * *
47753728 CACTGCAACTTTAGG-GAGATAGGA-TTGTCAGCTTTAATCTGCTC
1 CACTGCAACTTCAGGAGAGATAAGACTTGTTA--TTTAGTCTGCTC
* * **
47753772 CACTGCAACTTTA-GAGAGATAAGATTTGCCATCTTCAGTCTGC-C
1 CACTGCAACTTCAGGAGAGATAAGACTTGTTAT-TT-AGTCTGCTC
*
47753816 TCACTGCAACTTCAGGA-AGATAAGACTTGTTTACTTAGTCTGCTC
1 -CACTGCAACTTCAGGAGAGATAAGACTTG-TTATTTAGTCTGCTC
47753861 CACTGCAACTTCAGG-GAGATAAGACT
1 CACTGCAACTTCAGGAGAGATAAGACT
47753887 GGATGCGATC
Statistics
Matches: 196, Mismatches: 25, Indels: 44
0.74 0.09 0.17
Matches are distributed among these distances:
39 1 0.01
40 24 0.12
41 8 0.04
42 3 0.02
43 6 0.03
44 113 0.58
45 38 0.19
46 3 0.02
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (44 bp):
CACTGCAACTTCAGGAGAGATAAGACTTGTTATTTAGTCTGCTC
Found at i:47753820 original size:217 final size:216
Alignment explanation
Indices: 47753548--47753970 Score: 702
Period size: 217 Copynumber: 2.0 Consensus size: 216
47753538 GCCATCTTCG
** *
47753548 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTGCCTCACTGCAACTTCA
1 ATCTGCTCCACTACAACTTAGAGAGATAAGATCTGAAATCTTCAATCTGCCTCACTGCAACTTCA
* *
47753613 GGAGGATAAGACTCGCTTATTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGA
66 GGAAGATAAGACTCGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGA
* *
47753678 TCTGTTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTGCAACTTTAGG
131 TCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTACAACTTTAGG
47753743 GAGATAGGATTGTCAGCTTTA
196 GAGATAGGATTGTCAGCTTTA
* * ** *
47753764 ATCTGCTCCACTGCAACTTTAGAGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTC
1 ATCTGCTCCACTACAAC-TTAGAGAGATAAGATCTGAAATCTTCAATCTGCCTCACTGCAACTTC
* * *
47753829 AGGAAGATAAGACTTGTTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGCG
65 AGGAAGATAAGACTCGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCG
47753894 ATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTACAACTTTAG
130 ATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTACAACTTTAG
47753959 GGAGATAGGATT
195 GGAGATAGGATT
47753971 ATTGGCCACC
Statistics
Matches: 191, Mismatches: 15, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
216 14 0.07
217 177 0.93
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (216 bp):
ATCTGCTCCACTACAACTTAGAGAGATAAGATCTGAAATCTTCAATCTGCCTCACTGCAACTTCA
GGAAGATAAGACTCGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGA
TCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTCCACTACAACTTTAGG
GAGATAGGATTGTCAGCTTTA
Found at i:47753837 original size:45 final size:42
Alignment explanation
Indices: 47753600--47753925 Score: 165
Period size: 44 Copynumber: 7.6 Consensus size: 42
47753590 CAATCTGCCT
* *
47753600 CACTGCAACTTCAGGAGGATAAGACTCGCTTAT-TTAGTCTGCTC
1 CACTGCAACTTCAGGAAGATAAGA-TTGC--ATCTTAGTCTGCTC
* * * *
47753644 CACTGCAACTTCAGGGAGATAAGACTAG-ATGC-GA-TCTG-TT
1 CACTGCAACTTCAGGAAGATAAGA-TTGCAT-CTTAGTCTGCTC
* * * * *
47753684 CTCTGCAACTTCA-GAGAGATAAGATCTAAG-GTTTTAATCCGCTC
1 CACTGCAACTTCAGGA-AGATAAGAT-T--GCATCTTAGTCTGCTC
* * * * *
47753728 CACTGCAACTTTAGGGAGATAGGATTGTCAGCTTTAATCTGCTC
1 CACTGCAACTTCAGGAAGATAAGATTG-CATC-TTAGTCTGCTC
*
47753772 CACTGCAACTTTA-GAGAGATAAGATTTGCCATCTTCAGTCTGC-C
1 CACTGCAACTTCAGGA-AGATAAGA-TTG-CATCTT-AGTCTGCTC
**
47753816 TCACTGCAACTTCAGGAAGATAAGACTTGTTTACTTAGTCTGCTC
1 -CACTGCAACTTCAGGAAGATAAGA-TTGCAT-CTTAGTCTGCTC
* * * *
47753861 CACTGCAACTTCAGGGAGATAAGACTGGATGC-GA-TCTGCT-
1 CACTGCAACTTCAGGAAGATAAGATTGCAT-CTTAGTCTGCTC
*
47753901 CTCTGCAACTTCA-GAGAGATAAGAT
1 CACTGCAACTTCAGGA-AGATAAGAT
47753926 CTAAGGTTTT
Statistics
Matches: 222, Mismatches: 39, Indels: 46
0.72 0.13 0.15
Matches are distributed among these distances:
39 3 0.01
40 41 0.18
41 13 0.06
42 5 0.02
43 9 0.04
44 109 0.49
45 40 0.18
46 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (42 bp):
CACTGCAACTTCAGGAAGATAAGATTGCATCTTAGTCTGCTC
Found at i:47763003 original size:40 final size:40
Alignment explanation
Indices: 47762952--47763033 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
47762942 AACATCTATG
47762952 TCCAATCTCAAGTTCGTCTTTTTCGCCTCCATTTGCTCTA
1 TCCAATCTCAAGTTCGTCTTTTTCGCCTCCATTTGCTCTA
47762992 TCCAATCTCAAGTTCGTCTTTTTCGCCTCCATTTGCTCTA
1 TCCAATCTCAAGTTCGTCTTTTTCGCCTCCATTTGCTCTA
47763032 TC
1 TC
47763034 TTTTTCTCCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.15, C:0.33, G:0.10, T:0.43
Consensus pattern (40 bp):
TCCAATCTCAAGTTCGTCTTTTTCGCCTCCATTTGCTCTA
Found at i:47765565 original size:98 final size:98
Alignment explanation
Indices: 47765396--47765592 Score: 376
Period size: 98 Copynumber: 2.0 Consensus size: 98
47765386 GTGCAATAAA
47765396 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
*
47765461 CCTCTAAAATCCCAAACTTAGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCAGAATATTTCCTTT
47765494 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
*
47765559 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCAGAATATTTCCTTT
47765592 A
1 A
47765593 TTATTATTAT
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
98 97 1.00
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
CCTCTAAAATCCCAAACTCAGAATATTTCCTTT
Done.