Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62769430
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1067035 characters in sequence are not A, C, G, or T
File 161 of 206
Found at i:48774889 original size:113 final size:113
Alignment explanation
Indices: 48774691--48775029 Score: 660
Period size: 113 Copynumber: 3.0 Consensus size: 113
48774681 ATGATTTCAA
48774691 CATAGTACTAAGCTTGTTTGGAACTGAAACAATGTGGTAATGCACTTATATCATTCTAATGCATT
1 CATAGTACTAAGCTTGTTTGGAACTGAAACAATGTGGTAATGCACTTATATCATTCTAATGCATT
48774756 TAGAACCTACTAATGTCACGGGGCTAGAACTTTAGTCTGGCAAATCGT
66 TAGAACCTACTAATGTCACGGGGCTAGAACTTTAGTCTGGCAAATCGT
48774804 CATAGTACTAAGCTTGTTTGGAACTGAAACAATGTGGTAATGCACTTATATCATTCTAATGCATT
1 CATAGTACTAAGCTTGTTTGGAACTGAAACAATGTGGTAATGCACTTATATCATTCTAATGCATT
48774869 TAGAACCTACTAATGTCACGGGGCTAGAACTTTAGTCTGGCAAATCGT
66 TAGAACCTACTAATGTCACGGGGCTAGAACTTTAGTCTGGCAAATCGT
48774917 CATAGTACTAAGCTTGTTTGGAACTGAAACAATGTGGTAATGCACTTATATCATTCTAATGCATT
1 CATAGTACTAAGCTTGTTTGGAACTGAAACAATGTGGTAATGCACTTATATCATTCTAATGCATT
* *
48774982 TAGAACCTACTAATGTCACGGGGCTAAAACTTTATTCTGGCAAATCGT
66 TAGAACCTACTAATGTCACGGGGCTAGAACTTTAGTCTGGCAAATCGT
48775030 GTGACTTAGG
Statistics
Matches: 224, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
113 224 1.00
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (113 bp):
CATAGTACTAAGCTTGTTTGGAACTGAAACAATGTGGTAATGCACTTATATCATTCTAATGCATT
TAGAACCTACTAATGTCACGGGGCTAGAACTTTAGTCTGGCAAATCGT
Found at i:48777698 original size:53 final size:53
Alignment explanation
Indices: 48777635--48777743 Score: 173
Period size: 53 Copynumber: 2.1 Consensus size: 53
48777625 CATTCGAATG
* * *
48777635 TTTGTGAATTAAATGGAACACTAACAAGAGGTGGAAAACGATATTTTATCAAT
1 TTTGTGAATTAAATAGAAAACTAACAAAAGGTGGAAAACGATATTTTATCAAT
* *
48777688 TTTGTGAATTAAATAGAAAACTAACAAAAGGTGGAAAATGATATTTTATCACT
1 TTTGTGAATTAAATAGAAAACTAACAAAAGGTGGAAAACGATATTTTATCAAT
48777741 TTT
1 TTT
48777744 ATAGACGACT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.42, C:0.08, G:0.17, T:0.33
Consensus pattern (53 bp):
TTTGTGAATTAAATAGAAAACTAACAAAAGGTGGAAAACGATATTTTATCAAT
Found at i:48779653 original size:11 final size:11
Alignment explanation
Indices: 48779639--48779663 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
48779629 AGGTTACTCA
48779639 GATGCAAGTTG
1 GATGCAAGTTG
48779650 GATGCAAGTTG
1 GATGCAAGTTG
48779661 GAT
1 GAT
48779664 TACAAGTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.08, G:0.36, T:0.28
Consensus pattern (11 bp):
GATGCAAGTTG
Found at i:48783270 original size:18 final size:18
Alignment explanation
Indices: 48783244--48783278 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
48783234 TAACCTTTAA
*
48783244 CCTTTAACATTTCATCTT
1 CCTTAAACATTTCATCTT
48783262 CCTTAAACATTTCATCT
1 CCTTAAACATTTCATCT
48783279 CTTTGTAACC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.46
Consensus pattern (18 bp):
CCTTAAACATTTCATCTT
Found at i:48785733 original size:737 final size:733
Alignment explanation
Indices: 48784143--48786339 Score: 3338
Period size: 737 Copynumber: 3.0 Consensus size: 733
48784133 TAACTCGACT
* *
48784143 ATATTTAGACTCACTTCCCAATTGAAATTATGTCGAGAGAACATAACTGATGAAGATATGTTAGA
1 ATATTTAGAATCACTTCCCAATTGAAATTATGTGGAGAGAACATAACTGATGAAGATATGTTAG-
48784208 AAAAAACATACTCCACATTTCACGTAAATAATGTTGTCCTGTAGACACAATATCGTGAAAAGGTT
65 AAAAAACATACTCCACATTTCACGTAAATAATGTTGTCCTGTAGACACAATATCGTGAAAAGGTT
* * *
48784273 TTAAGAAATATTTTGAATTAATATATTGTCTTCTTCTGGATGAGCTAAATAATGAACTGTTAATG
130 TTAAGAAATATTCTGAATTAATATATTGTCTTCTTCTGGCTGAGCAAAATAATGAACTGTTAATG
* *
48784338 AAAAATCATGAGTCATGTTCAACTGACTCTACTCCAATCTCTGAAGCGAATGTGACATCATATAC
195 AAAAATCATGAGTCATGTCCAACTGACTCTACTCCAATCTCTGAAGCGAATGTGACATCATATAG
* *
48784403 TGAAACAGATAAACGCCACACTAGTAGTCGTGGTTGAGGACATGGTCGTGGTCGTGGTCACAGTC
260 TGAAACAGATAAAGGCCACACTAGTAGTTGTGGTTGAGGACATGGTCGTGGTCGTGGTCACAGTC
*
48784468 AAGGTCGAGGACGTGGACGTAAGCGAGGTGGTCATTTCAAGAATACCCACTAGAACTGGGATCAT
325 AAGGTCGAGGACGTAGACGTAAGCGAGGTGGTCATTTCAAGAATACCCACTAGAACTGGGATCAT
* *
48784533 AAGGATGGAAAGAATGATAAAAAATACAACTAGAAAAGTGAAAAGTTTGTGTTATCGTTGTGAAG
390 AAGGATGGAAAGAATGAT-AAAAATACAACTAGGAAAGTGGAAAGTTTGTGTTATCGTTGTGAAG
** * * * *
48784598 GTAAAAACCATT-AGTCCCACACTTGTCATACATCAAAGCATCTTGTATAGCTATATCAACAATG
454 GTAAAAACCATTGA-TCCCGTACTTGTCGTACACCAAAGCATCTTGTATAACTATATCAACAATC
* * ** *
48784662 ATTGAAGGATAAAAAGAAGAAAATAGAGACAAATTTTGTTTGGGAGAATGACAAAGATGACTATG
518 ATTGAAGGAT-TAAAGAAGAAAATAAAGAC-AATTTT-TTTATGAGAATGA-AAAGATGATTATG
48784727 GCATTGTTGGTACAACTCATTTGGAAGCTGTTAATTTCTTCACCACCCCTAAAGGGAATAATTGA
579 GCA-TGTTGGTACAACTCATTTGGAAGCTGTTAATTTCTTCACCACCCCTAAAGGGAATAATTGA
* * * *
48784792 TATTTTAATTTTATTATTATAGTTTTAAAGAGTAAATTTTATGCAATTTTGTTATATTTTTAACA
643 TCTTTTAATTTTATTATTATAGTTTTAAAGAATAAATTTTATGCAAGTTTGTTATGTTTTTAACA
48784857 ACATGATTATTATATTATGTTTTAAA
708 ACATGATTATTATATTATGTTTTAAA
* *
48784883 ATATTTAAAATCACTTCCCAATTGAAATTATGTGGAGAGAACATAACTGATGAGGATATGTTAGA
1 ATATTTAGAATCACTTCCCAATTGAAATTATGTGGAGAGAACATAACTGATGAAGATATGTTAGA
* **
48784948 AAAAACATACTCCACATTTCACGTAAATAATGTTGTCTTACAGACACAATATCGTGACAAAGGTT
66 AAAAACATACTCCACATTTCACGTAAATAATGTTGTCCTGTAGACACAATATCGTGA-AAAGGTT
* * * *
48785013 TTAAGAAATATTCTGAATTAATATATTGTCTTCTTTTGGCCGAGCAAAATAATGAGCTATTAATG
130 TTAAGAAATATTCTGAATTAATATATTGTCTTCTTCTGGCTGAGCAAAATAATGAACTGTTAATG
*
48785078 AAAAATCATGAGTCATGTCCAACTGACTCTACTCCAATCTCTGAAGCGAATGTGACA-CAATGTA
195 AAAAATCATGAGTCATGTCCAACTGACTCTACTCCAATCTCTGAAGCGAATGTGACATC-ATATA
* *
48785142 GTGAAACAGATAAAGGCCACACTAGTAGTTGTGGTTGAGGACATGGTCGTGGTCATGGTCACGGT
259 GTGAAACAGATAAAGGCCACACTAGTAGTTGTGGTTGAGGACATGGTCGTGGTCGTGGTCACAGT
* * *
48785207 CAAGGTTGAGGACGTAGACGTAAGCGAGGTGGTCATTTCAAGAATACACACTAGTACTGGGATCA
324 CAAGGTCGAGGACGTAGACGTAAGCGAGGTGGTCATTTCAAGAATACCCACTAGAACTGGGATCA
48785272 TAAGGATGGAAAGAATGAT-AAAATACAACTAGGAAAGTGGAAAGTTTGTGTTATCGTTGTGAAG
389 TAAGGATGGAAAGAATGATAAAAATACAACTAGGAAAGTGGAAAGTTTGTGTTATCGTTGTGAAG
*
48785336 GTAAAAACCATTGATCCCGTAGTTGTCGTACACCAAAGCATCTTGTATAACTATATCAACAATCA
454 GTAAAAACCATTGATCCCGTACTTGTCGTACACCAAAGCATCTTGTATAACTATATCAACAATCA
* *
48785401 TTGAAGTATTTAAAGAAGAAAATAAAGACAATTTTTTTTTTGAGAATGATAAAGATGATTATGGC
519 TTGAAGGA-TTAAAGAAGAAAATAAAGACAA-TTTTTTTATGAGAATGA-AAAGATGATTATGGC
* * *
48785466 ATCGTTGGTACAACTCATTTGAAAGTTGTCAATTTCTTCACCACCCCTAAAGGGAATAATTGATC
581 AT-GTTGGTACAACTCATTTGGAAGCTGTTAATTTCTTCACCACCCCTAAAGGGAATAATTGATC
*
48785531 TTTTAATTTTATTATTATAGTTTTAAAGAATAAATGTTATGCAAGTTTGTTATGTTTTTAACAAC
645 TTTTAATTTTATTATTATAGTTTTAAAGAATAAATTTTATGCAAGTTTGTTATGTTTTTAACAAC
48785596 ATGATTATTATATTATGTTTTAAA
710 ATGATTATTATATTATGTTTTAAA
*
48785620 ATATTTAGAATCACTTCCCAATTGAAATTATGTGGAGAGAACATAACAGATGAAGATATGTTAGA
1 ATATTTAGAATCACTTCCCAATTGAAATTATGTGGAGAGAACATAACTGATGAAGATATGTTAGA
*
48785685 AAAAACATACTCCATATTTCACGTAAATAATGTTGTCCTGTAGACACAATATCGTGAAAAAGGTT
66 AAAAACATACTCCACATTTCACGTAAATAATGTTGTCCTGTAGACACAATATCGTG-AAAAGGTT
* * * *
48785750 TTAAGAAATATTCTGAATTAATATCTTGCCTTCTTCTGGCTAAGCAAAATAATAAACTGTTAATG
130 TTAAGAAATATTCTGAATTAATATATTGTCTTCTTCTGGCTGAGCAAAATAATGAACTGTTAATG
* * *
48785815 AAAAATCTTGAGTCATGTCCAACTGACTCTACTCCAATCTCTAAAGCAAATGTGACATCATATAG
195 AAAAATCATGAGTCATGTCCAACTGACTCTACTCCAATCTCTGAAGCGAATGTGACATCATATAG
*
48785880 TGAAACAGATAAAGGCCACACTAGTAGTTGTGGTTGAGGACATGATCGTGGTCGTGGTCACAGTC
260 TGAAACAGATAAAGGCCACACTAGTAGTTGTGGTTGAGGACATGGTCGTGGTCGTGGTCACAGTC
* *
48785945 AAGGTCGAGGACGTGGACGTGGACGTCAGCGAGGTGGTCATTTCAAGAATACCCACTAGAACTAG
325 AAGGTCGAGGACGT--A----GACGTAAGCGAGGTGGTCATTTCAAGAATACCCACTAGAACTGG
*
48786010 GATCATAAGGATGGAAAGAATGATAAAAATACAACTGGGAAAGTGGAAAGTTTGTGTTATCGTTG
384 GATCATAAGGATGGAAAGAATGATAAAAATACAACTAGGAAAGTGGAAAGTTTGTGTTATCGTTG
* *
48786075 TGAAGGTAAAAACCATTGGTCCCGTACTTGTCGTACACTAAAGCATCTTGTATAACTATATCAAC
449 TGAAGGTAAAAACCATTGATCCCGTACTTGTCGTACACCAAAGCATCTTGTATAACTATATCAAC
* *
48786140 AATCATTGAAGGA-T-----A-ACAAT-AAGA-AA-------AT-AG-A-GACAA-AT--TT-T-
514 AATCATTGAAGGATTAAAGAAGAAAATAAAGACAATTTTTTTATGAGAATGAAAAGATGATTATG
* * * **
48786181 G--T-TTGTTACAACTCATTTGGATGCTATTAATTTCTTCACCACCCCTAAAGGGAATAAACGAT
579 GCATGTTGGTACAACTCATTTGGAAGCTGTTAATTTCTTCACCACCCCTAAAGGGAATAATTGAT
*
48786243 CTTTTAATTTTATTATTATAGTTTTAAAGAATAAATTTTATGCAAGTTTGTTATGCTTTTAACAA
644 CTTTTAATTTTATTATTATAGTTTTAAAGAATAAATTTTATGCAAGTTTGTTATGTTTTTAACAA
*
48786308 CTTGATTATTATATTATGTTTTAAA
709 CATGATTATTATATTATGTTTTAAA
48786333 ATATTTA
1 ATATTTA
48786340 TAAAAATTTA
Statistics
Matches: 1347, Mismatches: 95, Indels: 57
0.90 0.06 0.04
Matches are distributed among these distances:
713 146 0.11
715 1 0.00
717 1 0.00
718 1 0.00
719 2 0.00
721 2 0.00
722 2 0.00
723 2 0.00
724 1 0.00
725 2 0.00
726 1 0.00
734 2 0.00
735 4 0.00
736 5 0.00
737 484 0.36
738 129 0.10
739 59 0.04
740 325 0.24
742 1 0.00
743 64 0.05
744 113 0.08
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (733 bp):
ATATTTAGAATCACTTCCCAATTGAAATTATGTGGAGAGAACATAACTGATGAAGATATGTTAGA
AAAAACATACTCCACATTTCACGTAAATAATGTTGTCCTGTAGACACAATATCGTGAAAAGGTTT
TAAGAAATATTCTGAATTAATATATTGTCTTCTTCTGGCTGAGCAAAATAATGAACTGTTAATGA
AAAATCATGAGTCATGTCCAACTGACTCTACTCCAATCTCTGAAGCGAATGTGACATCATATAGT
GAAACAGATAAAGGCCACACTAGTAGTTGTGGTTGAGGACATGGTCGTGGTCGTGGTCACAGTCA
AGGTCGAGGACGTAGACGTAAGCGAGGTGGTCATTTCAAGAATACCCACTAGAACTGGGATCATA
AGGATGGAAAGAATGATAAAAATACAACTAGGAAAGTGGAAAGTTTGTGTTATCGTTGTGAAGGT
AAAAACCATTGATCCCGTACTTGTCGTACACCAAAGCATCTTGTATAACTATATCAACAATCATT
GAAGGATTAAAGAAGAAAATAAAGACAATTTTTTTATGAGAATGAAAAGATGATTATGGCATGTT
GGTACAACTCATTTGGAAGCTGTTAATTTCTTCACCACCCCTAAAGGGAATAATTGATCTTTTAA
TTTTATTATTATAGTTTTAAAGAATAAATTTTATGCAAGTTTGTTATGTTTTTAACAACATGATT
ATTATATTATGTTTTAAA
Found at i:48791383 original size:45 final size:45
Alignment explanation
Indices: 48791327--48791558 Score: 249
Period size: 45 Copynumber: 5.2 Consensus size: 45
48791317 AACACACAAC
* * *
48791327 ACCACCCTTATAGTCAATAGTACTCGGTGAAATCAGCACATAGCA
1 ACCACCTTTATACTCAATGGTACTCGGTGAAATCAGCACATAGCA
* *
48791372 ACCACCTTTATACTCAATGGTAC-CGGGTGAAATTAGCACATAGAA
1 ACCACCTTTATACTCAATGGTACTC-GGTGAAATCAGCACATAGCA
48791417 ACCACCTTTATACTCAATGGTAC-CGGGTGAAATCAGCACATAGCA
1 ACCACCTTTATACTCAATGGTACTC-GGTGAAATCAGCACATAGCA
* *
48791462 ACCACCTATATAAC-CATTGGTA-TCCGGTGAAATCAGCACATAGCA
1 ACCACCTTTAT-ACTCAATGGTACT-CGGTGAAATCAGCACATAGCA
* ** * ** *
48791507 ACCACATTTATTTTCATTAATA-TCGAGTGGAATCAGCACATAGCA
1 ACCACCTTTATACTCAATGGTACTCG-GTGAAATCAGCACATAGCA
*
48791552 TCCACCT
1 ACCACCT
48791559 ATATTTCCAA
Statistics
Matches: 163, Mismatches: 18, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
44 3 0.02
45 157 0.96
46 3 0.02
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (45 bp):
ACCACCTTTATACTCAATGGTACTCGGTGAAATCAGCACATAGCA
Found at i:48791483 original size:90 final size:90
Alignment explanation
Indices: 48791327--48791562 Score: 280
Period size: 90 Copynumber: 2.6 Consensus size: 90
48791317 AACACACAAC
* * *
48791327 ACCACCCTTATAGTCAATAGTACTC-GGTGAAATCAGCACATAGCAACCACCTTTATACTCAATG
1 ACCACCTTTATACTCAATAGTAC-CGGGTGAAATCAGCACATAGCAACCACCTATATACTCAATG
*
48791391 GTA-CCGGGTGAAATTAGCACATAGAA
65 GTATCC-GGTGAAATCAGCACATAGAA
* *
48791417 ACCACCTTTATACTCAATGGTACCGGGTGAAATCAGCACATAGCAACCACCTATATAAC-CATTG
1 ACCACCTTTATACTCAATAGTACCGGGTGAAATCAGCACATAGCAACCACCTATAT-ACTCAATG
*
48791481 GTATCCGGTGAAATCAGCACATAGCA
65 GTATCCGGTGAAATCAGCACATAGAA
* ** * * * * * *
48791507 ACCACATTTATTTTCATTAATATCGAGTGGAATCAGCACATAGCATCCACCTATAT
1 ACCACCTTTATACTCAATAGTACCGGGTGAAATCAGCACATAGCAACCACCTATAT
48791563 TTCCAACGAT
Statistics
Matches: 126, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
89 1 0.01
90 121 0.96
91 4 0.03
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (90 bp):
ACCACCTTTATACTCAATAGTACCGGGTGAAATCAGCACATAGCAACCACCTATATACTCAATGG
TATCCGGTGAAATCAGCACATAGAA
Found at i:48792347 original size:17 final size:18
Alignment explanation
Indices: 48792321--48792361 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
48792311 TTTCATCTTT
48792321 CATCTCCCTT-AACCTTC
1 CATCTCCCTTAAACCTTC
* *
48792338 CATCTTCCTTAAACCTTT
1 CATCTCCCTTAAACCTTC
48792356 CATCTC
1 CATCTC
48792362 ATTGTAACCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.20, C:0.41, G:0.00, T:0.39
Consensus pattern (18 bp):
CATCTCCCTTAAACCTTC
Found at i:48793316 original size:16 final size:16
Alignment explanation
Indices: 48793295--48793332 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
48793285 TAATTTATTA
48793295 AATAAAA-ATTATATTC
1 AATAAAATATTA-ATTC
*
48793311 ATTAAAATATTAATTC
1 AATAAAATATTAATTC
48793327 AATAAA
1 AATAAA
48793333 GGGTGAGTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (16 bp):
AATAAAATATTAATTC
Found at i:48797251 original size:19 final size:19
Alignment explanation
Indices: 48797227--48797266 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
48797217 TATGTCTTTT
48797227 TTAATAGTTTAATGTTAAA
1 TTAATAGTTTAATGTTAAA
* * *
48797246 TTAATATTTTTATTTTAAA
1 TTAATAGTTTAATGTTAAA
48797265 TT
1 TT
48797267 TCAGAATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (19 bp):
TTAATAGTTTAATGTTAAA
Found at i:48799806 original size:21 final size:22
Alignment explanation
Indices: 48799776--48799818 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
48799766 GTGCTTGTTA
* *
48799776 GTTATGTTTTA-ATTTTTAATG
1 GTTATATTTTACAATTTTAATG
48799797 GTTATATTTTACAATTTTAATG
1 GTTATATTTTACAATTTTAATG
48799819 AATTAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.28, C:0.02, G:0.12, T:0.58
Consensus pattern (22 bp):
GTTATATTTTACAATTTTAATG
Found at i:48800105 original size:2 final size:2
Alignment explanation
Indices: 48800098--48800144 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
48800088 CAATTTTCTT
48800098 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
48800140 TA TA T
1 TA TA T
48800145 GTGTTTTAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:48800449 original size:12 final size:12
Alignment explanation
Indices: 48800420--48800459 Score: 53
Period size: 13 Copynumber: 3.2 Consensus size: 12
48800410 AAACAATCAA
*
48800420 AAAATTTATTACT
1 AAAATTTACTA-T
48800433 AAAATTTACTAT
1 AAAATTTACTAT
48800445 AAAATATTACTAT
1 AAAAT-TTACTAT
48800458 AA
1 AA
48800460 CATTAAAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 6 0.24
13 19 0.76
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (12 bp):
AAAATTTACTAT
Found at i:48808755 original size:50 final size:50
Alignment explanation
Indices: 48808655--48808842 Score: 157
Period size: 50 Copynumber: 3.6 Consensus size: 50
48808645 TTTCTTGTAC
* *
48808655 TGCCAATGCCATATCCCAGATATGGTCTTACACAGGAGTTCTCATATCGG
1 TGCCAATGCCATATCCCAGACATGGTCTTACACAGGACTTCTCATATCGG
* *
48808705 TGCTC-ATGCCATATCCCAGACATGGTCTTAC-GAGAGACCTT-TCATCTCGG
1 TGC-CAATGCCATATCCCAGACATGGTCTTACACAG-GA-CTTCTCATATCGG
* * * * ** * *
48808755 TGCCAACGCCATGTCCCAAACATGGACTTACATGGGACCTCTCATAACCTCAATGA
1 TGCCAATGCCATATCCCAGACATGGTCTTACACAGGACTTCTCAT-A--TC---GG
*
48808811 TGCCAATGCCATGTCCCAGACATGGTCTTACA
1 TGCCAATGCCATATCCCAGACATGGTCTTACA
48808843 TGGGATCTAT
Statistics
Matches: 110, Mismatches: 16, Indels: 18
0.76 0.11 0.12
Matches are distributed among these distances:
49 5 0.05
50 69 0.63
51 4 0.04
53 2 0.02
56 30 0.27
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATATCCCAGACATGGTCTTACACAGGACTTCTCATATCGG
Found at i:48814104 original size:49 final size:49
Alignment explanation
Indices: 48814050--48814149 Score: 173
Period size: 49 Copynumber: 2.0 Consensus size: 49
48814040 AGTTAAGTTA
* *
48814050 GTTATCACTGTAGCTTAGATTTATTTGCACTTTTAGTCCCATTACTTTT
1 GTTATCACTGTAACTTAGATTTATCTGCACTTTTAGTCCCATTACTTTT
*
48814099 GTTATCACTGTAACTTAGATTTATCTGCATTTTTAGTCCCATTACTTTT
1 GTTATCACTGTAACTTAGATTTATCTGCACTTTTAGTCCCATTACTTTT
48814148 GT
1 GT
48814150 AGTAAGATAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.21, C:0.18, G:0.12, T:0.49
Consensus pattern (49 bp):
GTTATCACTGTAACTTAGATTTATCTGCACTTTTAGTCCCATTACTTTT
Found at i:48823350 original size:62 final size:59
Alignment explanation
Indices: 48823277--48823393 Score: 162
Period size: 62 Copynumber: 1.9 Consensus size: 59
48823267 AGTAATTATC
* * * *
48823277 TTAATATTAAATTTAATTTAATGTTTATCTACAAGATAAATATTCTATTATTTTAATAAGAT
1 TTAATATTAAATTTAATCTAATATTTATCT---AGATAAATATTATATTAATTTAATAAGAT
*
48823339 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
1 TTAATATTAAATTTAATCTAATATTTATCTAGATAAATATTATATTAATTTAATA
48823394 TTAAAGTGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 22 0.44
62 28 0.56
ACGTcount: A:0.43, C:0.04, G:0.03, T:0.50
Consensus pattern (59 bp):
TTAATATTAAATTTAATCTAATATTTATCTAGATAAATATTATATTAATTTAATAAGAT
Found at i:48824864 original size:10 final size:10
Alignment explanation
Indices: 48824849--48824873 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
48824839 GCTCCTATGG
48824849 GTGAACCTAT
1 GTGAACCTAT
48824859 GTGAACCTAT
1 GTGAACCTAT
48824869 GTGAA
1 GTGAA
48824874 AAGGATGTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (10 bp):
GTGAACCTAT
Found at i:48829993 original size:30 final size:30
Alignment explanation
Indices: 48829959--48830016 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
48829949 TAAGACTATC
* *
48829959 GTGAAAGGGTTTGTCAAGAGTAAGTCAGAT
1 GTGAAAGAGTCTGTCAAGAGTAAGTCAGAT
* *
48829989 GTGAATGAGTCTGTCAAGTGTAAGTCAG
1 GTGAAAGAGTCTGTCAAGAGTAAGTCAG
48830017 CATATGTCTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.09, G:0.33, T:0.28
Consensus pattern (30 bp):
GTGAAAGAGTCTGTCAAGAGTAAGTCAGAT
Found at i:48830469 original size:30 final size:30
Alignment explanation
Indices: 48830435--48830726 Score: 269
Period size: 30 Copynumber: 9.7 Consensus size: 30
48830425 ATCTTTGTTG
* * **
48830435 AATGGAAACCTTTTTGGCTATTCTCCGTTA
1 AATGGAAGCCTTTCTGGCTATTCTCTATTA
* *
48830465 AATGGAAGCCTTTCTGGTTGTTCTCTATTA
1 AATGGAAGCCTTTCTGGCTATTCTCTATTA
* * *
48830495 AATGGAAGCCTTCCTGGTTGTTCTCTATTA
1 AATGGAAGCCTTTCTGGCTATTCTCTATTA
* * * * * *
48830525 GATGGAAGTCTTTGTGTCTATTCTTTGTTA
1 AATGGAAGCCTTTCTGGCTATTCTCTATTA
* *
48830555 GATGGAAGCCTTTTTGGCTATTCTCTATTA
1 AATGGAAGCCTTTCTGGCTATTCTCTATTA
* *
48830585 AATGGAAGCCTTTCTGGTTGTTCTCTATTA
1 AATGGAAGCCTTTCTGGCTATTCTCTATTA
* * *
48830615 AATGGAAGCCTTCCTGGTTGTTCTCTATTA
1 AATGGAAGCCTTTCTGGCTATTCTCTATTA
* * ** * * *
48830645 GATGGAAGTCTTTGAGTCTATTCTTTGTTA
1 AATGGAAGCCTTTCTGGCTATTCTCTATTA
* * * *
48830675 GATGGAAGCCTTTGTGGCTATTCTTTGTTA
1 AATGGAAGCCTTTCTGGCTATTCTCTATTA
* *
48830705 AATGGAAGCCTTTGTGGATATT
1 AATGGAAGCCTTTCTGGCTATT
48830727 TTTGTAGAAG
Statistics
Matches: 221, Mismatches: 41, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 221 1.00
ACGTcount: A:0.20, C:0.15, G:0.22, T:0.43
Consensus pattern (30 bp):
AATGGAAGCCTTTCTGGCTATTCTCTATTA
Found at i:48830576 original size:120 final size:120
Alignment explanation
Indices: 48830426--48830717 Score: 514
Period size: 120 Copynumber: 2.4 Consensus size: 120
48830416 TTTTTGGCTA
* *
48830426 TCTTTGTT-GAATGGAAACCTTTTTGGCTATTCTCCGTTAAATGGAAGCCTTTCTGGTTGTTCTC
1 TCTTTGTTAG-ATGGAAGCCTTTTTGGCTATTCTCTGTTAAATGGAAGCCTTTCTGGTTGTTCTC
*
48830490 TATTAAATGGAAGCCTTCCTGGTTGTTCTCTATTAGATGGAAGTCTTTGTGTCTAT
65 TATTAAATGGAAGCCTTCCTGGTTGTTCTCTATTAGATGGAAGTCTTTGAGTCTAT
*
48830546 TCTTTGTTAGATGGAAGCCTTTTTGGCTATTCTCTATTAAATGGAAGCCTTTCTGGTTGTTCTCT
1 TCTTTGTTAGATGGAAGCCTTTTTGGCTATTCTCTGTTAAATGGAAGCCTTTCTGGTTGTTCTCT
48830611 ATTAAATGGAAGCCTTCCTGGTTGTTCTCTATTAGATGGAAGTCTTTGAGTCTAT
66 ATTAAATGGAAGCCTTCCTGGTTGTTCTCTATTAGATGGAAGTCTTTGAGTCTAT
* *
48830666 TCTTTGTTAGATGGAAGCCTTTGTGGCTATTCTTTGTTAAATGGAAGCCTTT
1 TCTTTGTTAGATGGAAGCCTTTTTGGCTATTCTCTGTTAAATGGAAGCCTTT
48830718 GTGGATATTT
Statistics
Matches: 164, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
120 163 0.99
121 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.21, T:0.43
Consensus pattern (120 bp):
TCTTTGTTAGATGGAAGCCTTTTTGGCTATTCTCTGTTAAATGGAAGCCTTTCTGGTTGTTCTCT
ATTAAATGGAAGCCTTCCTGGTTGTTCTCTATTAGATGGAAGTCTTTGAGTCTAT
Found at i:48830646 original size:90 final size:90
Alignment explanation
Indices: 48830435--48830720 Score: 297
Period size: 90 Copynumber: 3.2 Consensus size: 90
48830425 ATCTTTGTTG
* * * ** * * *
48830435 AATGGAAACCTTTTTGGCTATTCTCCGTTAAATGGAAGCCTTTCTGGTTGTTCTCTATTAAATGG
1 AATGGAAGCCTTTGTGTCTATTCTCTATTAGATGGAAGCCTTTCTGGCTATTCTCTATTAAATGG
*
48830500 AAGCCTTCCTGGTTGTTCTCTATTA
66 AAGCCTTTCTGGTTGTTCTCTATTA
* * * * *
48830525 GATGGAAGTCTTTGTGTCTATTCTTTGTTAGATGGAAGCCTTTTTGGCTATTCTCTATTAAATGG
1 AATGGAAGCCTTTGTGTCTATTCTCTATTAGATGGAAGCCTTTCTGGCTATTCTCTATTAAATGG
48830590 AAGCCTTTCTGGTTGTTCTCTATTA
66 AAGCCTTTCTGGTTGTTCTCTATTA
* * ** * * * *
48830615 AATGGAAGCCTTCCTG-GT-TGTTCTCTATTAGATGGAAGTCTTTGAGTCTATTCTTTGTTAGAT
1 AATGGAAGCCTT--TGTGTCTATTCTCTATTAGATGGAAGCCTTTCTGGCTATTCTCTATTAAAT
* * * * *
48830678 GGAAGCCTTTGTGGCTATTCTTTGTTA
64 GGAAGCCTTTCTGGTTGTTCTCTATTA
48830705 AATGGAAGCCTTTGTG
1 AATGGAAGCCTTTGTG
48830721 GATATTTTTG
Statistics
Matches: 164, Mismatches: 29, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
88 2 0.01
89 1 0.01
90 157 0.96
91 2 0.01
92 2 0.01
ACGTcount: A:0.20, C:0.16, G:0.22, T:0.43
Consensus pattern (90 bp):
AATGGAAGCCTTTGTGTCTATTCTCTATTAGATGGAAGCCTTTCTGGCTATTCTCTATTAAATGG
AAGCCTTTCTGGTTGTTCTCTATTA
Found at i:48832842 original size:29 final size:30
Alignment explanation
Indices: 48832805--48833060 Score: 247
Period size: 29 Copynumber: 8.7 Consensus size: 30
48832795 TTCACAAAGG
* *
48832805 TAGCCACAAGGGCATCC-TTTTATAGAGAA
1 TAGCCACAAGGGCATCCATTTAACAGAGAA
*
48832834 TAGCTACAAGGGCATCCATTTAACAGAGAA
1 TAGCCACAAGGGCATCCATTTAACAGAGAA
* * * * *
48832864 TAGTCATAAAGGCTTCCATTTAACAAAG-A
1 TAGCCACAAGGGCATCCATTTAACAGAGAA
* * * *
48832893 TAGCCCCAAAGGTATCCATTTAACATAGAA
1 TAGCCACAAGGGCATCCATTTAACAGAGAA
* * * *
48832923 TAGCCTCAA-AGCGTCCATTTAATAGAGAA
1 TAGCCACAAGGGCATCCATTTAACAGAGAA
* *
48832952 TAGCCACTA-GGCATCCATTTAACAAAGAA
1 TAGCCACAAGGGCATCCATTTAACAGAGAA
* *
48832981 TAGCCAAAAAGGCATCCATTTAACAGAG-A
1 TAGCCACAAGGGCATCCATTTAACAGAGAA
* *
48833010 TAGCCACAAAGGCATCCATTTAACAGAG-G
1 TAGCCACAAGGGCATCCATTTAACAGAGAA
*
48833039 TAGCCATGAA-GGCATCCATTTA
1 TAGCCA-CAAGGGCATCCATTTA
48833061 CACATACAAC
Statistics
Matches: 190, Mismatches: 33, Indels: 8
0.82 0.14 0.03
Matches are distributed among these distances:
29 130 0.68
30 60 0.32
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.22
Consensus pattern (30 bp):
TAGCCACAAGGGCATCCATTTAACAGAGAA
Found at i:48832940 original size:88 final size:88
Alignment explanation
Indices: 48832786--48833060 Score: 294
Period size: 88 Copynumber: 3.1 Consensus size: 88
48832776 CCTTTTACAC
* * * * * * * *
48832786 AGGCATCCA-TTCACAAAG-GTAGCCACAAGGGCATCC-TTTTATAGAGAATAGCTACAAGGGCA
1 AGGCATCCATTTAACAAAGAATAGCCAAAAAGGCATCCATTTAACAGAG-ATAGCCACAAAGGCA
*
48832848 TCCATTTAACAGAGAATAGTCATAA
65 TCCATTTAACAGAGAATAGCCAT-A
* ** * * * *
48832873 AGGCTTCCATTTAACAAAG-ATAGCCCCAAAGGTATCCATTTAACATAGAATAGCCTCAAA-GCG
1 AGGCATCCATTTAACAAAGAATAGCCAAAAAGGCATCCATTTAACAGAG-ATAGCCACAAAGGCA
*
48832936 TCCATTTAATAGAGAATAGCCACT-
65 TCCATTTAACAGAGAATAGCCA-TA
48832960 AGGCATCCATTTAACAAAGAATAGCCAAAAAGGCATCCATTTAACAGAGATAGCCACAAAGGCAT
1 AGGCATCCATTTAACAAAGAATAGCCAAAAAGGCATCCATTTAACAGAGATAGCCACAAAGGCAT
*
48833025 CCATTTAACAGAG-GTAGCCATGA
66 CCATTTAACAGAGAATAGCCAT-A
48833048 AGGCATCCATTTA
1 AGGCATCCATTTA
48833061 CACATACAAC
Statistics
Matches: 157, Mismatches: 24, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
86 1 0.01
87 42 0.27
88 97 0.62
89 17 0.11
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.22
Consensus pattern (88 bp):
AGGCATCCATTTAACAAAGAATAGCCAAAAAGGCATCCATTTAACAGAGATAGCCACAAAGGCAT
CCATTTAACAGAGAATAGCCATA
Found at i:48833057 original size:117 final size:118
Alignment explanation
Indices: 48832786--48833060 Score: 344
Period size: 117 Copynumber: 2.4 Consensus size: 118
48832776 CCTTTTACAC
* * *
48832786 AGGCATCCA-TTCACAAAGGTAGCCA-CAAGGGCATCC-TTTTATAGAGAATAGCTACAAGGGCA
1 AGGCATCCATTTAACAAAGGTAGCCATCAA-GGCATCCATTTAATAGAGAATAGCCACAAGGGCA
* * * * *
48832848 TCCATTTAACAGAGAATAGTCATAAAGGCTTCCATTTAACAAAGATAGCCCCAA
65 TCCATTTAACAAAGAATAGCCAAAAAGGCATCCATTTAACAAAGATAGCCACAA
* * * * * *
48832902 AGGTATCCATTTAACATAGAATAGCC-TCAAAGCGTCCATTTAATAGAGAATAGCCACTA-GGCA
1 AGGCATCCATTTAACAAAG-GTAGCCATCAAGGCATCCATTTAATAGAGAATAGCCACAAGGGCA
*
48832965 TCCATTTAACAAAGAATAGCCAAAAAGGCATCCATTTAACAGAGATAGCCACAA
65 TCCATTTAACAAAGAATAGCCAAAAAGGCATCCATTTAACAAAGATAGCCACAA
* *
48833019 AGGCATCCATTTAACAGAGGTAGCCATGAAGGCATCCATTTA
1 AGGCATCCATTTAACAAAGGTAGCCATCAAGGCATCCATTTA
48833061 CACATACAAC
Statistics
Matches: 133, Mismatches: 21, Indels: 9
0.82 0.13 0.06
Matches are distributed among these distances:
116 13 0.10
117 94 0.71
118 26 0.20
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.22
Consensus pattern (118 bp):
AGGCATCCATTTAACAAAGGTAGCCATCAAGGCATCCATTTAATAGAGAATAGCCACAAGGGCAT
CCATTTAACAAAGAATAGCCAAAAAGGCATCCATTTAACAAAGATAGCCACAA
Found at i:48833440 original size:15 final size:15
Alignment explanation
Indices: 48833422--48833451 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
48833412 TTTCTCTTTA
*
48833422 CAGACTTTTTCACAC
1 CAGACTTGTTCACAC
48833437 CAGACTTGTTCACAC
1 CAGACTTGTTCACAC
48833452 ACTTTACTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.33, G:0.10, T:0.30
Consensus pattern (15 bp):
CAGACTTGTTCACAC
Found at i:48840571 original size:14 final size:15
Alignment explanation
Indices: 48840540--48840572 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
48840530 CCTTAATTAA
*
48840540 AATTTATTTGAGCTT
1 AATTTATTTCAGCTT
48840555 AATTTATTTCA-CTT
1 AATTTATTTCAGCTT
48840569 AATT
1 AATT
48840573 AATACTAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.30, C:0.09, G:0.06, T:0.55
Consensus pattern (15 bp):
AATTTATTTCAGCTT
Found at i:48842282 original size:45 final size:45
Alignment explanation
Indices: 48842231--48842319 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
48842221 TGTGAATCGA
* * *
48842231 ACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCCACCGG
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTAAATCCACCGG
48842276 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTAAATCCACCG
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTAAATCCACCG
48842320 AGTATCTGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.33
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGTGGTTGCTATGTGCTAAATCCACCGG
Found at i:48846707 original size:21 final size:21
Alignment explanation
Indices: 48846669--48846709 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
48846659 ATATGTGAAA
*
48846669 AATTTACATACGCTATGAATG
1 AATTTACATACGCCATGAATG
* *
48846690 AATTTACCTATGCCATGAAT
1 AATTTACATACGCCATGAAT
48846710 AAATACACTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (21 bp):
AATTTACATACGCCATGAATG
Found at i:48847901 original size:19 final size:19
Alignment explanation
Indices: 48847873--48847911 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
48847863 CCCCTGCAGT
*
48847873 TTAATTTTTCCAAAT-TTTC
1 TTAATGTTT-CAAATGTTTC
48847892 TTAATGTTTCAAATGTTTC
1 TTAATGTTTCAAATGTTTC
48847911 T
1 T
48847912 GATTTAGTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.26, C:0.13, G:0.05, T:0.56
Consensus pattern (19 bp):
TTAATGTTTCAAATGTTTC
Found at i:48850420 original size:16 final size:17
Alignment explanation
Indices: 48850383--48850419 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
48850373 AAACTGAATC
* *
48850383 TTTTCGATTTATTTAAT
1 TTTTCGATTTAATCAAT
48850400 TTTTCGATTTAATCAAT
1 TTTTCGATTTAATCAAT
48850417 TTT
1 TTT
48850420 CATATTCAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.24, C:0.08, G:0.05, T:0.62
Consensus pattern (17 bp):
TTTTCGATTTAATCAAT
Found at i:48850621 original size:24 final size:23
Alignment explanation
Indices: 48850581--48850636 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
48850571 AAAACTTAAT
*
48850581 AAATCTAAACCCATTAA-AGTTTA
1 AAATCCAAACCCATTAATA-TTTA
48850604 AAATCCAATACCCATTAATATTTA
1 AAATCCAA-ACCCATTAATATTTA
*
48850628 AAACCCAAA
1 AAATCCAAA
48850637 TTGATCATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 8 0.28
24 20 0.69
25 1 0.03
ACGTcount: A:0.50, C:0.21, G:0.02, T:0.27
Consensus pattern (23 bp):
AAATCCAAACCCATTAATATTTA
Found at i:48853428 original size:14 final size:14
Alignment explanation
Indices: 48853411--48853439 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
48853401 AACACAAAGC
48853411 AAACACTACAAACT
1 AAACACTACAAACT
48853425 AAACACTACAAACT
1 AAACACTACAAACT
48853439 A
1 A
48853440 GAGAAAGTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.28, G:0.00, T:0.14
Consensus pattern (14 bp):
AAACACTACAAACT
Found at i:48857330 original size:23 final size:22
Alignment explanation
Indices: 48857287--48857330 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
48857277 TTCTAAGCCG
48857287 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
48857310 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
48857331 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:48861780 original size:13 final size:13
Alignment explanation
Indices: 48861764--48861788 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48861754 TTTTAAAAAG
48861764 TGCTGTGGGAAAC
1 TGCTGTGGGAAAC
48861777 TGCTGTGGGAAA
1 TGCTGTGGGAAA
48861789 GTGTTTTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.40, T:0.24
Consensus pattern (13 bp):
TGCTGTGGGAAAC
Found at i:48873106 original size:16 final size:16
Alignment explanation
Indices: 48873085--48873119 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
48873075 GCTTCTGTCA
48873085 CGTAGACTTATCGTTT
1 CGTAGACTTATCGTTT
* *
48873101 CGTAGACTTCTTGTTT
1 CGTAGACTTATCGTTT
48873117 CGT
1 CGT
48873120 TGAACCACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.14, C:0.20, G:0.20, T:0.46
Consensus pattern (16 bp):
CGTAGACTTATCGTTT
Found at i:48876150 original size:20 final size:19
Alignment explanation
Indices: 48876103--48876190 Score: 62
Period size: 17 Copynumber: 4.8 Consensus size: 19
48876093 CAAGATAAAC
48876103 ATTAAATTAA--ATTTAAT
1 ATTAAATTAATTATTTAAT
48876120 ATTAAGA-TAATTACTTTAAT
1 ATTAA-ATTAATTA-TTTAAT
** *
48876140 ATTAAATTAATTAAATACT
1 ATTAAATTAATTATTTAAT
*
48876159 ATTAAGA-TAAATA-TTAA-
1 ATTAA-ATTAATTATTTAAT
*
48876176 ATTAAATTAAATATT
1 ATTAAATTAATTATT
48876191 AAATCTATTA
Statistics
Matches: 57, Mismatches: 6, Indels: 15
0.73 0.08 0.19
Matches are distributed among these distances:
16 1 0.02
17 19 0.33
18 4 0.07
19 15 0.26
20 18 0.32
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (19 bp):
ATTAAATTAATTATTTAAT
Found at i:48876167 original size:39 final size:37
Alignment explanation
Indices: 48876103--48876211 Score: 104
Period size: 39 Copynumber: 3.0 Consensus size: 37
48876093 CAAGATAAAC
*
48876103 ATTAAATTAA-ATTTAA--TATTAAGATAATTACTTTAA
1 ATTAAATTAATATTAAATCTATTAAGATAATTA--TTAA
*
48876139 TATTAAATT-A-ATTAAATACTATTAAGATAAATATTAA
1 -ATTAAATTAATATTAAAT-CTATTAAGATAATTATTAA
*
48876176 ATTAAATTAAATATTAAATCTATTAAAATAA-TATTA
1 ATTAAATT-AATATTAAATCTATTAAGATAATTATTA
48876212 TTTTTAAAAT
Statistics
Matches: 63, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
36 14 0.22
37 17 0.27
38 12 0.19
39 20 0.32
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (37 bp):
ATTAAATTAATATTAAATCTATTAAGATAATTATTAA
Found at i:48876205 original size:17 final size:16
Alignment explanation
Indices: 48876137--48876194 Score: 66
Period size: 17 Copynumber: 3.6 Consensus size: 16
48876127 TAATTACTTT
48876137 AATATTAAATTAATTA
1 AATATTAAATTAATTA
* *
48876153 AATACT--ATTAAGATA
1 AATATTAAATTAA-TTA
48876168 AATATTAAATTAAATTA
1 AATATTAAATT-AATTA
48876185 AATATTAAAT
1 AATATTAAAT
48876195 CTATTAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
14 5 0.15
15 7 0.21
16 5 0.15
17 15 0.44
18 2 0.06
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (16 bp):
AATATTAAATTAATTA
Found at i:48876219 original size:38 final size:41
Alignment explanation
Indices: 48876129--48876211 Score: 102
Period size: 38 Copynumber: 2.1 Consensus size: 41
48876119 TATTAAGATA
* *
48876129 ATTACTTTAATATTAAATTAATTAAATACTATTAAGATAAAT
1 ATTAATTTAA-ATTAAATTAATTAAATACTATTAAAATAAAT
*
48876171 ATTAAATTAAATTAAA-T-ATTAAAT-CTATTAAAAT-AAT
1 ATTAATTTAAATTAAATTAATTAAATACTATTAAAATAAAT
48876208 ATTA
1 ATTA
48876212 TTTTTAAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
37 7 0.18
38 9 0.24
39 7 0.18
40 1 0.03
41 6 0.16
42 8 0.21
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (41 bp):
ATTAATTTAAATTAAATTAATTAAATACTATTAAAATAAAT
Found at i:48876523 original size:13 final size:13
Alignment explanation
Indices: 48876505--48876529 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48876495 ATTTATGATC
48876505 TCAAGTTCAATTT
1 TCAAGTTCAATTT
48876518 TCAAGTTCAATT
1 TCAAGTTCAATT
48876530 ACCCATTGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.44
Consensus pattern (13 bp):
TCAAGTTCAATTT
Found at i:48878099 original size:25 final size:25
Alignment explanation
Indices: 48878065--48878114 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
48878055 TTTCTCATTC
* *
48878065 CAATTTTACCCTGGTAAAATTTTGA
1 CAATTTTACCCCGATAAAATTTTGA
48878090 CAATTTTACCCCGATAAAATTTTGA
1 CAATTTTACCCCGATAAAATTTTGA
48878115 GAAAATTCGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (25 bp):
CAATTTTACCCCGATAAAATTTTGA
Found at i:48879116 original size:2 final size:2
Alignment explanation
Indices: 48879098--48879137 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
48879088 TATCATAGAC
* *
48879098 AT AT AC AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
48879138 TCAATTTACC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:48893558 original size:23 final size:23
Alignment explanation
Indices: 48893528--48893574 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
48893518 TTTGGCTATA
*
48893528 TTTTGAACATGTCTATCTGACGC
1 TTTTGAACACGTCTATCTGACGC
*
48893551 TTTTGAACACGTTTATCTGACGC
1 TTTTGAACACGTCTATCTGACGC
48893574 T
1 T
48893575 CTGTCCTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.40
Consensus pattern (23 bp):
TTTTGAACACGTCTATCTGACGC
Found at i:48895987 original size:13 final size:13
Alignment explanation
Indices: 48895969--48896022 Score: 51
Period size: 13 Copynumber: 4.2 Consensus size: 13
48895959 AGATTAGCTA
48895969 TTCAATATGGATC
1 TTCAATATGGATC
*
48895982 TTCAATATGGATT
1 TTCAATATGGATC
48895995 TTGCAAGTA---ATC
1 TT-CAA-TATGGATC
*
48896007 ATCAATATGGATC
1 TTCAATATGGATC
48896020 TTC
1 TTC
48896023 CATCAGCATC
Statistics
Matches: 32, Mismatches: 4, Indels: 10
0.70 0.09 0.22
Matches are distributed among these distances:
10 2 0.06
11 3 0.09
12 3 0.09
13 19 0.59
14 3 0.09
15 2 0.06
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39
Consensus pattern (13 bp):
TTCAATATGGATC
Found at i:48897811 original size:6 final size:6
Alignment explanation
Indices: 48897800--48897829 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
48897790 TTCTACCCCA
*
48897800 AAACAT AAACAT AAAAAT AAACAT AAACAT
1 AAACAT AAACAT AAACAT AAACAT AAACAT
48897830 GGTTATAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.70, C:0.13, G:0.00, T:0.17
Consensus pattern (6 bp):
AAACAT
Found at i:48900201 original size:18 final size:18
Alignment explanation
Indices: 48900178--48900229 Score: 86
Period size: 18 Copynumber: 2.9 Consensus size: 18
48900168 ATACTTGATA
48900178 CTAAACACCCATTTTTAG
1 CTAAACACCCATTTTTAG
*
48900196 CTAAACACCCATTTTCAG
1 CTAAACACCCATTTTTAG
*
48900214 CTAAACACCTATTTTT
1 CTAAACACCCATTTTT
48900230 TTTCCCCTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.33, C:0.29, G:0.04, T:0.35
Consensus pattern (18 bp):
CTAAACACCCATTTTTAG
Found at i:48920408 original size:31 final size:31
Alignment explanation
Indices: 48920373--48920438 Score: 132
Period size: 31 Copynumber: 2.1 Consensus size: 31
48920363 CGTTTGATGA
48920373 ATGTTGAGCATGTTTTAATGATGACTGGACT
1 ATGTTGAGCATGTTTTAATGATGACTGGACT
48920404 ATGTTGAGCATGTTTTAATGATGACTGGACT
1 ATGTTGAGCATGTTTTAATGATGACTGGACT
48920435 ATGT
1 ATGT
48920439 GTGATTTGTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.26, C:0.09, G:0.26, T:0.39
Consensus pattern (31 bp):
ATGTTGAGCATGTTTTAATGATGACTGGACT
Found at i:48925666 original size:27 final size:30
Alignment explanation
Indices: 48925617--48925678 Score: 76
Period size: 27 Copynumber: 2.2 Consensus size: 30
48925607 GGCAACCCTA
* *
48925617 TTATTATTATTATTATTATTTTTACTTTAT
1 TTATTACTATTATTATTATTTTTACTTTAC
*
48925647 TTATTACT-TTATT-TTA-TTTTATTTTAC
1 TTATTACTATTATTATTATTTTTACTTTAC
48925674 TTATT
1 TTATT
48925679 TGGATATTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
27 14 0.48
28 3 0.10
29 5 0.17
30 7 0.24
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (30 bp):
TTATTACTATTATTATTATTTTTACTTTAC
Found at i:48928614 original size:6 final size:6
Alignment explanation
Indices: 48928603--48928627 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
48928593 CAGAGAGTTA
48928603 CACGGG CACGGG CACGGG CACGGG C
1 CACGGG CACGGG CACGGG CACGGG C
48928628 TAGAACACGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.36, G:0.48, T:0.00
Consensus pattern (6 bp):
CACGGG
Found at i:48940928 original size:51 final size:51
Alignment explanation
Indices: 48940851--48941048 Score: 251
Period size: 51 Copynumber: 3.9 Consensus size: 51
48940841 TAATTAATGA
* *
48940851 TATC-GGTTCACATAGTAGCCTACACATAGTACTACACATGTGACCATCA-C
1 TATCTGGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCAT-AGC
* * * *
48940901 TATCTGATACACGTAGTAGTCTGCACATAGTACTACACATGTGATCGA-AGC
1 TATCTGGTACACATAGTAGCCTGCACATAGTACTACACATGTGA-CCATAGC
* * *
48940952 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACC-TATC
1 TATCTGGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCATAGC
* *
48941002 TTTCTGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCA
1 TATCTGGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCA
48941049 CCACTTTCAC
Statistics
Matches: 126, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
50 50 0.40
51 74 0.59
52 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (51 bp):
TATCTGGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCATAGC
Found at i:48941039 original size:101 final size:101
Alignment explanation
Indices: 48940861--48941045 Score: 282
Period size: 101 Copynumber: 1.8 Consensus size: 101
48940851 TATCGGTTCA
* * *
48940861 CATAGTAGCCTACACATAGTACTACACATGTGACCATCACTATCTGATACACGTAGTAGTCTGCA
1 CATAGTAGCCTACACATAGTACTACACATGCGACCAT-ACTATCTGATACACATAGTAGCCTGCA
*
48940926 CATAGTACTACACATGTGATCGAAGCTATCTGGTACG
65 CATAGTACTACACACGTGATCGAAGCTATCTGGTACG
* * *
48940963 CATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCTTTCTGGTACACATAGTAGCCTGCA
1 CATAGTAGCCTACACATAGTACTACACATGCGACCATA-CTATCTGATACACATAGTAGCCTGCA
48941027 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
48941046 CCACCACTTT
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
100 1 0.01
101 41 0.55
102 33 0.44
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (101 bp):
CATAGTAGCCTACACATAGTACTACACATGCGACCATACTATCTGATACACATAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAGCTATCTGGTACG
Found at i:48941068 original size:101 final size:101
Alignment explanation
Indices: 48940856--48941079 Score: 249
Period size: 101 Copynumber: 2.2 Consensus size: 101
48940846 AATGATATCG
* * *
48940856 GTTCACATAGTAGCCTACACATAGTACTACACATGTGACCATCACTATCTGATACACGTAGTAGT
1 GTTCACATAGTAGCCTACACATAGTACTACACATGCGACCAT-ACTATCTGATACACATAGTAGC
* * **
48940921 CTGCACATAGTACTACACATGTGATCGAAGCTATCTG
65 CTGCACATAGTACTACACACGTGATCCAAGCTATCAC
* * * * *
48940958 GTACGCATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCTTTCTGGTACACATAGTAGC
1 GTTCACATAGTAGCCTACACATAGTACTACACATGCGACCATA-CTATCTGATACACATAGTAGC
*
48941022 CTGCACATAGTACTACACACGTGA-CCACCA-CTTTCAC
65 CTGCACATAGTACTACACACGTGATCCA--AGCTATCAC
*
48941059 TTTCACATAGT-GCCCTACACA
1 GTTCACATAGTAG-CCTACACA
48941080 CAGTCCGTGC
Statistics
Matches: 101, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
100 4 0.04
101 60 0.59
102 37 0.37
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (101 bp):
GTTCACATAGTAGCCTACACATAGTACTACACATGCGACCATACTATCTGATACACATAGTAGCC
TGCACATAGTACTACACACGTGATCCAAGCTATCAC
Found at i:48941188 original size:9 final size:10
Alignment explanation
Indices: 48941155--48941186 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
48941145 CAACTGGGAA
48941155 TTTCTCACTT
1 TTTCTCACTT
48941165 TTTCTCACTT
1 TTTCTCACTT
48941175 TTTCTCACTT
1 TTTCTCACTT
48941185 TT
1 TT
48941187 CTTTTTCACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.09, C:0.28, G:0.00, T:0.62
Consensus pattern (10 bp):
TTTCTCACTT
Found at i:48944365 original size:16 final size:16
Alignment explanation
Indices: 48944344--48944377 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
48944334 GCTTAGTGGT
48944344 GTTAGGTAACCATTAG
1 GTTAGGTAACCATTAG
48944360 GTTAGGTAACCATTAG
1 GTTAGGTAACCATTAG
48944376 GT
1 GT
48944378 AAACATTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.32
Consensus pattern (16 bp):
GTTAGGTAACCATTAG
Found at i:48951034 original size:19 final size:19
Alignment explanation
Indices: 48951010--48951049 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
48951000 TACCCCTTTG
48951010 CCGCCTTTCTCAAGGCTGC
1 CCGCCTTTCTCAAGGCTGC
*
48951029 CCGCCTTTCTCAGGGCTGC
1 CCGCCTTTCTCAAGGCTGC
48951048 CC
1 CC
48951050 TCCGGTAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.07, C:0.45, G:0.23, T:0.25
Consensus pattern (19 bp):
CCGCCTTTCTCAAGGCTGC
Found at i:48952504 original size:54 final size:55
Alignment explanation
Indices: 48952443--48952553 Score: 206
Period size: 55 Copynumber: 2.0 Consensus size: 55
48952433 AAATGTTTTT
48952443 TTAGTCACTTAAGTATGAGTTTTTC-TTTTTTTAACTCATCACCCAACTATTATA
1 TTAGTCACTTAAGTATGAGTTTTTCTTTTTTTTAACTCATCACCCAACTATTATA
*
48952497 TTAGTCACTTAAGTATGCGTTTTTCTTTTTTTTAACTCATCACCCAACTATTATA
1 TTAGTCACTTAAGTATGAGTTTTTCTTTTTTTTAACTCATCACCCAACTATTATA
48952552 TT
1 TT
48952554 GATACAATTA
Statistics
Matches: 55, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
54 24 0.44
55 31 0.56
ACGTcount: A:0.26, C:0.19, G:0.07, T:0.48
Consensus pattern (55 bp):
TTAGTCACTTAAGTATGAGTTTTTCTTTTTTTTAACTCATCACCCAACTATTATA
Found at i:48959958 original size:29 final size:29
Alignment explanation
Indices: 48959916--48959974 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
48959906 TTATGGAAGA
* * * *
48959916 GATGGAGAACTTGTTCGTTGAGAGTTCGT
1 GATGAAGAACTTGTTCATTAAGAATTCGT
48959945 GATGAAGAACTTGTTCATTAAGAATTCGT
1 GATGAAGAACTTGTTCATTAAGAATTCGT
48959974 G
1 G
48959975 TCAAGGTGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.27, C:0.10, G:0.29, T:0.34
Consensus pattern (29 bp):
GATGAAGAACTTGTTCATTAAGAATTCGT
Found at i:48962418 original size:20 final size:20
Alignment explanation
Indices: 48962384--48962425 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
48962374 AACTATTTAA
** *
48962384 ATAATATTATTTGAATAGTT
1 ATAATATTAACTGAATAATT
48962404 ATAATATTAACTGAATAATT
1 ATAATATTAACTGAATAATT
48962424 AT
1 AT
48962426 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.02, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAACTGAATAATT
Found at i:48963894 original size:41 final size:41
Alignment explanation
Indices: 48963837--48963920 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
48963827 AAAATTGCTT
48963837 TATTTGATACATAGTGATTTATGTGACATGCATAATACTCC
1 TATTTGATACATAGTGATTTATGTGACATGCATAATACTCC
48963878 TATTTGATACATAGTGATTTATGTGACATGCATAATACTCC
1 TATTTGATACATAGTGATTTATGTGACATGCATAATACTCC
48963919 TA
1 TA
48963921 CATTAGGTGG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (41 bp):
TATTTGATACATAGTGATTTATGTGACATGCATAATACTCC
Found at i:48964722 original size:12 final size:12
Alignment explanation
Indices: 48964705--48964734 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
48964695 AAAATGTCAA
48964705 AGATTTTAGACC
1 AGATTTTAGACC
*
48964717 AGATTTTGGACC
1 AGATTTTAGACC
48964729 AGATTT
1 AGATTT
48964735 CATTATGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (12 bp):
AGATTTTAGACC
Found at i:48967838 original size:104 final size:103
Alignment explanation
Indices: 48967647--48968017 Score: 600
Period size: 104 Copynumber: 3.6 Consensus size: 103
48967637 TGTATATAAA
** * *
48967647 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
*
48967711 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCCG
48967751 AGGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCATATCT
* *
48967816 TTGAAATGAAAAGGGGGTTGCTATGTTCTTATTCCCCCG
65 TTGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
48967855 AGGGGTTGCTAAGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCATATCT
48967920 TTGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* * **
48967959 AGGGGTTGCTATGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGGGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
48968018 ATAACGGTTA
Statistics
Matches: 252, Mismatches: 13, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
103 29 0.12
104 181 0.72
105 41 0.16
106 1 0.00
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.31
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:48969350 original size:20 final size:20
Alignment explanation
Indices: 48969316--48969357 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
48969306 AACTATTTAA
** *
48969316 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
48969336 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
48969356 AT
1 AT
48969358 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:48977071 original size:2 final size:2
Alignment explanation
Indices: 48977066--48977092 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
48977056 TTTTTCGAAT
48977066 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
48977093 TTTCCATTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:48982068 original size:30 final size:31
Alignment explanation
Indices: 48982003--48982068 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 31
48981993 TTAGACTCTT
*
48982003 AACTTGGCAATTGTTCCCACATTGGGACCTA
1 AACTTGGCAATTGTTCCCACATTGGGACATA
* * *
48982034 AACTT-GCAATTGTTCCCTCATTGGGGCATG
1 AACTTGGCAATTGTTCCCACATTGGGACATA
48982064 AACTT
1 AACTT
48982069 TAGGATTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 26 0.84
31 5 0.16
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (31 bp):
AACTTGGCAATTGTTCCCACATTGGGACATA
Found at i:48982173 original size:60 final size:60
Alignment explanation
Indices: 48982079--48982238 Score: 203
Period size: 60 Copynumber: 2.6 Consensus size: 60
48982069 TAGGATTTTA
* * * *
48982079 CTAACTTGGACAAAAAAAAAAGTTCAAGCCCCAATGTGGGAATAATTGCCAAGTTCAGGGC
1 CTAACTTGG-CCAAAAAAAAAGTTCAAACCCCAATGTGGGAACAATTGCCAAGTTCAAGGC
* *
48982140 CTAACTTGGCCAAAAAAGAAGTTTAAACCCCAATGTGGGAACAATTGCCAAGTTCAAGGC
1 CTAACTTGGCCAAAAAAAAAGTTCAAACCCCAATGTGGGAACAATTGCCAAGTTCAAGGC
* * * **
48982200 ATAACTTGAACAAAAAAAAAAGTTCAGGCCCCAATGTGG
1 CTAACTTG-GCCAAAAAAAAAGTTCAAACCCCAATGTGG
48982239 AAAAAGTTGC
Statistics
Matches: 85, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
60 52 0.61
61 33 0.39
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.19
Consensus pattern (60 bp):
CTAACTTGGCCAAAAAAAAAGTTCAAACCCCAATGTGGGAACAATTGCCAAGTTCAAGGC
Found at i:48983321 original size:29 final size:30
Alignment explanation
Indices: 48983288--48983360 Score: 103
Period size: 30 Copynumber: 2.5 Consensus size: 30
48983278 AACCTGGAAG
48983288 TTTTGAGGTTTAATT-AAACCTTTCAAAAA
1 TTTTGAGGTTTAATTAAAACCTTTCAAAAA
* **
48983317 TTTTGGGGTTTAATTAAAAGTTTTCAAAAA
1 TTTTGAGGTTTAATTAAAACCTTTCAAAAA
*
48983347 TTTTAAGGTTTAAT
1 TTTTGAGGTTTAAT
48983361 GATTTTTTCA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
29 14 0.37
30 24 0.63
ACGTcount: A:0.36, C:0.05, G:0.14, T:0.45
Consensus pattern (30 bp):
TTTTGAGGTTTAATTAAAACCTTTCAAAAA
Found at i:48987655 original size:30 final size:31
Alignment explanation
Indices: 48987621--48987679 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
48987611 TAAAGCTAAA
48987621 AATTTGAAAAGTA-AAGGACTAAAATTGACC
1 AATTTGAAAAGTATAAGGACTAAAATTGACC
*
48987651 AATTTGAAAAGTATAAGGACTGAAATTGA
1 AATTTGAAAAGTATAAGGACTAAAATTGA
48987680 ACAAATAGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 13 0.48
31 14 0.52
ACGTcount: A:0.49, C:0.07, G:0.19, T:0.25
Consensus pattern (31 bp):
AATTTGAAAAGTATAAGGACTAAAATTGACC
Found at i:48988455 original size:27 final size:27
Alignment explanation
Indices: 48988417--48988482 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 27
48988407 AATATATACA
* *
48988417 TAAATTTA-AAAACTATTCAAAAAATTT
1 TAAATATATAAAACT-TACAAAAAATTT
* * *
48988444 TAAA-ATATAAAAGTTAGAATAAATTT
1 TAAATATATAAAACTTACAAAAAATTT
48988470 TAAATATATAAAA
1 TAAATATATAAAA
48988483 TTTATTTTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
26 15 0.47
27 17 0.53
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (27 bp):
TAAATATATAAAACTTACAAAAAATTT
Found at i:48991170 original size:46 final size:46
Alignment explanation
Indices: 48991103--48991205 Score: 161
Period size: 46 Copynumber: 2.2 Consensus size: 46
48991093 GGTTATCTAT
* *
48991103 TAGGATATTATTATGGGATATTTTATTTTAGCAATTTGATTCTTAA
1 TAGGATATTATTATGGGATATTATATCTTAGCAATTTGATTCTTAA
*
48991149 TAGGATATTATTATGGGATATTATCTCTTAGCAATTTGATTCTTAA
1 TAGGATATTATTATGGGATATTATATCTTAGCAATTTGATTCTTAA
* *
48991195 TGGGACATTAT
1 TAGGATATTAT
48991206 AGGATATTAT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 52 1.00
ACGTcount: A:0.30, C:0.07, G:0.17, T:0.47
Consensus pattern (46 bp):
TAGGATATTATTATGGGATATTATATCTTAGCAATTTGATTCTTAA
Found at i:48991217 original size:46 final size:44
Alignment explanation
Indices: 48991112--48991218 Score: 128
Period size: 46 Copynumber: 2.4 Consensus size: 44
48991102 TTAGGATATT
* *
48991112 ATTATGGGATATT-TTATTTTAGCAATTTGATTCTTAATAGGAT
1 ATTATAGGATATTATTATTTTAGCAATTTGATTCTTAATAGGAC
* * *
48991155 ATTATTATGGGATATTA-TCTCTTAGCAATTTGATTCTTAATGGGAC
1 ATTA-TA--GGATATTATTATTTTAGCAATTTGATTCTTAATAGGAC
48991201 ATTATAGGATATTATTAT
1 ATTATAGGATATTATTAT
48991219 GAGATATTAT
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
43 12 0.23
44 3 0.06
45 2 0.04
46 36 0.68
ACGTcount: A:0.31, C:0.07, G:0.16, T:0.47
Consensus pattern (44 bp):
ATTATAGGATATTATTATTTTAGCAATTTGATTCTTAATAGGAC
Found at i:48993336 original size:21 final size:21
Alignment explanation
Indices: 48993281--48993362 Score: 74
Period size: 21 Copynumber: 3.9 Consensus size: 21
48993271 GGTGGATCAA
*
48993281 CTCTTTTGAGCTTCTGTTCAG
1 CTCTTTTGAGCTTCTGTTAAG
* * *
48993302 CTCTTATGAACTTCTGTTAAT
1 CTCTTTTGAGCTTCTGTTAAG
* *
48993323 CTCTTTTTAGCTTCCGTTAAAG
1 CTCTTTTGAGCTTCTGTT-AAG
* * *
48993345 GTCTTATGAGCTTATGTT
1 CTCTTTTGAGCTTCTGTT
48993363 GGCGTGATTC
Statistics
Matches: 46, Mismatches: 14, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
21 31 0.67
22 15 0.33
ACGTcount: A:0.17, C:0.20, G:0.16, T:0.48
Consensus pattern (21 bp):
CTCTTTTGAGCTTCTGTTAAG
Found at i:48995003 original size:24 final size:24
Alignment explanation
Indices: 48994971--48995022 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
48994961 CAATGACCTC
* * *
48994971 TACCCCCTGTTGGACTCCCTATTG
1 TACCACCTGCTGGACTCCCGATTG
* *
48994995 TACCACCTGCTGTACTTCCGATTG
1 TACCACCTGCTGGACTCCCGATTG
48995019 TACC
1 TACC
48995023 TCTGGTTGCA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.15, C:0.37, G:0.15, T:0.33
Consensus pattern (24 bp):
TACCACCTGCTGGACTCCCGATTG
Found at i:48996548 original size:21 final size:21
Alignment explanation
Indices: 48996519--48996698 Score: 110
Period size: 21 Copynumber: 8.6 Consensus size: 21
48996509 AAAGCTCGAA
* *
48996519 AGCTGAACAGAAGCTAATGAG
1 AGCTAAACAGAAGCTAATAAG
*
48996540 AGCTAAACAGAAGCTCATAAG
1 AGCTAAACAGAAGCTAATAAG
* **
48996561 AGCTAAACAGAAACCCATAAG
1 AGCTAAACAGAAGCTAATAAG
* * * **
48996582 GGTTTAACAGAAGCTCGTAAG
1 AGCTAAACAGAAGCTAATAAG
* * *
48996603 AGCTAAATAGAAACTCATAAG
1 AGCTAAACAGAAGCTAATAAG
* * * *
48996624 AGTTGAACAAAAGTTTAA-AAG
1 AGCTAAACAGAAG-CTAATAAG
* * * * *
48996645 AGTTGAACAGAAACTCATATG
1 AGCTAAACAGAAGCTAATAAG
* **
48996666 AGTTAAACAGAAGCTCGTAAG
1 AGCTAAACAGAAGCTAATAAG
48996687 AGCTAAACAGAA
1 AGCTAAACAGAA
48996699 AGTAAAACAC
Statistics
Matches: 123, Mismatches: 34, Indels: 4
0.76 0.21 0.02
Matches are distributed among these distances:
20 2 0.02
21 119 0.97
22 2 0.02
ACGTcount: A:0.47, C:0.15, G:0.21, T:0.18
Consensus pattern (21 bp):
AGCTAAACAGAAGCTAATAAG
Found at i:48996571 original size:42 final size:42
Alignment explanation
Indices: 48996519--48996699 Score: 191
Period size: 42 Copynumber: 4.3 Consensus size: 42
48996509 AAAGCTCGAA
* * * * *
48996519 AGCTGAACAGAAGCTAATGAGAGCTAAACAGAAGCTCATAAG
1 AGCTAAACAGAAACTCATAAGAGTTAAACAGAAGCTCATAAG
* * * *
48996561 AGCTAAACAGAAACCCATAAGGGTTTAACAGAAGCTCGTAAG
1 AGCTAAACAGAAACTCATAAGAGTTAAACAGAAGCTCATAAG
* * * * * *
48996603 AGCTAAATAGAAACTCATAAGAGTTGAACAAAAGTTTAAAAG
1 AGCTAAACAGAAACTCATAAGAGTTAAACAGAAGCTCATAAG
* * * *
48996645 AGTTGAACAGAAACTCATATGAGTTAAACAGAAGCTCGTAAG
1 AGCTAAACAGAAACTCATAAGAGTTAAACAGAAGCTCATAAG
48996687 AGCTAAACAGAAA
1 AGCTAAACAGAAA
48996700 GTAAAACACG
Statistics
Matches: 109, Mismatches: 30, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
42 109 1.00
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.18
Consensus pattern (42 bp):
AGCTAAACAGAAACTCATAAGAGTTAAACAGAAGCTCATAAG
Found at i:48996605 original size:63 final size:64
Alignment explanation
Indices: 48996522--48996700 Score: 191
Period size: 63 Copynumber: 2.8 Consensus size: 64
48996512 GCTCGAAAGC
* * * *
48996522 TGAACAGAAGCTAATGAGAGCTAAACAGAAGCTCATAAGAGCTAAACAGAAA-CCCATAAGGGT
1 TGAACAGAAGCTCATAAGAGCTAAACAGAAGCTCATAAGAGCTAAACAGAAAGCCCAAAAGAGT
* * * * * * ***
48996585 TTAACAGAAGCTCGTAAGAGCTAAATAGAAACTCATAAGAGTTGAACA-AAAGTTTAAAAGAGT
1 TGAACAGAAGCTCATAAGAGCTAAACAGAAGCTCATAAGAGCTAAACAGAAAGCCCAAAAGAGT
* * * *
48996648 TGAACAGAAACTCATATGAGTTAAACAGAAGCTCGTAAGAGCTAAACAGAAAG
1 TGAACAGAAGCTCATAAGAGCTAAACAGAAGCTCATAAGAGCTAAACAGAAAG
48996701 TAAAACACGA
Statistics
Matches: 91, Mismatches: 23, Indels: 3
0.78 0.20 0.03
Matches are distributed among these distances:
62 3 0.03
63 84 0.92
64 4 0.04
ACGTcount: A:0.47, C:0.15, G:0.21, T:0.18
Consensus pattern (64 bp):
TGAACAGAAGCTCATAAGAGCTAAACAGAAGCTCATAAGAGCTAAACAGAAAGCCCAAAAGAGT
Found at i:49004289 original size:42 final size:42
Alignment explanation
Indices: 49004230--49004378 Score: 194
Period size: 42 Copynumber: 3.5 Consensus size: 42
49004220 ATGAGAGCTA
* * * **
49004230 AACAGAAACCCATAAGAGCTAAATAGAAACCCATAAGGGTTT
1 AACAGAAGCTCATAAGAGCTAAATAGAAACTCATAATAGTTT
49004272 AACAGAAGCTCATAAGAGCTAAATAGAAACTCATAATAGTTT
1 AACAGAAGCTCATAAGAGCTAAATAGAAACTCATAATAGTTT
* * *
49004314 AACAGAAGCTCGA-AAGAGCTGAATGGAAACTCATATTAG-TT
1 AACAGAAGCTC-ATAAGAGCTAAATAGAAACTCATAATAGTTT
49004355 AAGCAGAAGCTCATAAGAGCTAAA
1 AA-CAGAAGCTCATAAGAGCTAAA
49004379 CAAAAAGTAA
Statistics
Matches: 95, Mismatches: 9, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
41 5 0.05
42 89 0.94
43 1 0.01
ACGTcount: A:0.46, C:0.16, G:0.18, T:0.19
Consensus pattern (42 bp):
AACAGAAGCTCATAAGAGCTAAATAGAAACTCATAATAGTTT
Found at i:49004320 original size:21 final size:21
Alignment explanation
Indices: 49004223--49004307 Score: 98
Period size: 21 Copynumber: 4.0 Consensus size: 21
49004213 GGAGCTCATG
49004223 AGAGCTAAACAGAAACCCATA
1 AGAGCTAAACAGAAACCCATA
*
49004244 AGAGCTAAATAGAAACCCATA
1 AGAGCTAAACAGAAACCCATA
* * * * *
49004265 AGGGTTTAACAGAAGCTCATA
1 AGAGCTAAACAGAAACCCATA
* *
49004286 AGAGCTAAATAGAAACTCATA
1 AGAGCTAAACAGAAACCCATA
49004307 A
1 A
49004308 TAGTTTAACA
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 52 1.00
ACGTcount: A:0.49, C:0.18, G:0.16, T:0.16
Consensus pattern (21 bp):
AGAGCTAAACAGAAACCCATA
Found at i:49004888 original size:17 final size:18
Alignment explanation
Indices: 49004856--49004889 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
49004846 TAATCTATCA
*
49004856 AATTAACTATTTTTTCTC
1 AATTAACTAATTTTTCTC
49004874 AATTAA-TAATTTTTCT
1 AATTAACTAATTTTTCT
49004890 AAACATTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.32, C:0.12, G:0.00, T:0.56
Consensus pattern (18 bp):
AATTAACTAATTTTTCTC
Found at i:49011329 original size:21 final size:21
Alignment explanation
Indices: 49011300--49011489 Score: 213
Period size: 21 Copynumber: 9.0 Consensus size: 21
49011290 TTCGGGTGGA
49011300 TCAGCTCTTTTGAGCTTCTGT
1 TCAGCTCTTTTGAGCTTCTGT
* *
49011321 TCAGGTCTTATGAGCTTCTGT
1 TCAGCTCTTTTGAGCTTCTGT
* *
49011342 TCAGGTCTTATGAGCTTCTGT
1 TCAGCTCTTTTGAGCTTCTGT
* *
49011363 TCAGATCGTTTGAGCTTCTGT
1 TCAGCTCTTTTGAGCTTCTGT
*
49011384 TCAGATCTTTTGAGCTTCTGT
1 TCAGCTCTTTTGAGCTTCTGT
* *
49011405 TCAGCTCTTTTGAGCTTTTGC
1 TCAGCTCTTTTGAGCTTCTGT
** * *
49011426 TCAGCTCTTACGAGCTTTTGC
1 TCAGCTCTTTTGAGCTTCTGT
*
49011447 TCAACTCTTTTGAGCTT-TCGT
1 TCAGCTCTTTTGAGCTTCT-GT
*
49011468 TAAGCT-TTTATGAGCTTCTGT
1 TCAGCTCTTT-TGAGCTTCTGT
49011489 T
1 T
49011490 GACGATGTAC
Statistics
Matches: 149, Mismatches: 17, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
20 4 0.03
21 144 0.97
22 1 0.01
ACGTcount: A:0.14, C:0.21, G:0.20, T:0.45
Consensus pattern (21 bp):
TCAGCTCTTTTGAGCTTCTGT
Found at i:49015619 original size:46 final size:46
Alignment explanation
Indices: 49015552--49015697 Score: 166
Period size: 46 Copynumber: 3.0 Consensus size: 46
49015542 AGTGAGGTGT
*
49015552 TAGGATATTATTATAGGATATTATCTTTTAACAATTTGATTCCTAA
1 TAGGATATTATTATAGAATATTATCTTTTAACAATTTGATTCCTAA
* *
49015598 TAGGATATTATTATAGAATATTATCTCTTATCAATTTGATTCCTAA
1 TAGGATATTATTATAGAATATTATCTTTTAACAATTTGATTCCTAA
* *
49015644 TGGGACATTATACTATATTATATGAGATATTATCTTTTAGCAATTTGATTCCTA
1 TAGG-----ATA-T-TATTATA-GA-ATATTATCTTTTAACAATTTGATTCCTA
49015698 CGTAACTACT
Statistics
Matches: 85, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
46 46 0.54
51 3 0.04
52 1 0.01
53 7 0.08
54 2 0.02
55 26 0.31
ACGTcount: A:0.34, C:0.10, G:0.11, T:0.45
Consensus pattern (46 bp):
TAGGATATTATTATAGAATATTATCTTTTAACAATTTGATTCCTAA
Found at i:49016658 original size:14 final size:15
Alignment explanation
Indices: 49016628--49016667 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
49016618 TTTACGGTTA
*
49016628 GAGAAAAATAAGAAG
1 GAGAAAAAGAAGAAG
49016643 GAGAAAAAGAAG-AG
1 GAGAAAAAGAAGAAG
*
49016657 GAGAAGAAGAA
1 GAGAAAAAGAA
49016668 AAAGAAGAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.65, C:0.00, G:0.33, T:0.03
Consensus pattern (15 bp):
GAGAAAAAGAAGAAG
Found at i:49016667 original size:20 final size:20
Alignment explanation
Indices: 49016638--49016675 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
49016628 GAGAAAAATA
*
49016638 AGAAGGAGAAAAAGAAGAGG
1 AGAAGAAGAAAAAGAAGAGG
49016658 AGAAGAAGAAAAAGAAGA
1 AGAAGAAGAAAAAGAAGA
49016676 AGAAGGTGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (20 bp):
AGAAGAAGAAAAAGAAGAGG
Found at i:49017034 original size:36 final size:36
Alignment explanation
Indices: 49017012--49017084 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
49017002 GTAGTATTGT
49017012 TGTTGGTATATTGTTACGTATGTTGTTATACATGGC
1 TGTTGGTATATTGTTACGTATGTTGTTATACATGGC
* * *
49017048 TGTTGGTATATTGTTGCTTATGTTGTTATACGTGGC
1 TGTTGGTATATTGTTACGTATGTTGTTATACATGGC
49017084 T
1 T
49017085 AACCAGCTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.16, C:0.08, G:0.26, T:0.49
Consensus pattern (36 bp):
TGTTGGTATATTGTTACGTATGTTGTTATACATGGC
Found at i:49017174 original size:13 final size:13
Alignment explanation
Indices: 49017156--49017204 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 13
49017146 TTTCTTACAA
49017156 ATTGTTTTGTAAT
1 ATTGTTTTGTAAT
*
49017169 ATTGTTGTTGGTTACAA
1 ATTGTT-TT-G-TA-AT
49017186 ATTGTTTTGTAAT
1 ATTGTTTTGTAAT
49017199 ATTGTT
1 ATTGTT
49017205 GTTGGTTACA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
13 13 0.43
14 4 0.13
15 2 0.07
16 4 0.13
17 7 0.23
ACGTcount: A:0.22, C:0.02, G:0.18, T:0.57
Consensus pattern (13 bp):
ATTGTTTTGTAAT
Found at i:49017177 original size:30 final size:30
Alignment explanation
Indices: 49017133--49017215 Score: 121
Period size: 30 Copynumber: 2.7 Consensus size: 30
49017123 AAATGGGATA
*
49017133 TAATATGTGGTTGTTTCTTACAAATTGTTTTG
1 TAATAT-T-GTTGTTGCTTACAAATTGTTTTG
*
49017165 TAATATTGTTGTTGGTTACAAATTGTTTTG
1 TAATATTGTTGTTGCTTACAAATTGTTTTG
*
49017195 TAATATTGTTGTTGGTTACAA
1 TAATATTGTTGTTGCTTACAA
49017216 CAGTTAGAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
30 42 0.86
31 1 0.02
32 6 0.12
ACGTcount: A:0.24, C:0.05, G:0.19, T:0.52
Consensus pattern (30 bp):
TAATATTGTTGTTGCTTACAAATTGTTTTG
Found at i:49018681 original size:24 final size:23
Alignment explanation
Indices: 49018626--49018710 Score: 77
Period size: 24 Copynumber: 3.7 Consensus size: 23
49018616 ATACTCTTAT
* *
49018626 TTTAAA-TTATCATA-AATATTA
1 TTTAAATTTATCATATACTATAA
*
49018647 TTTAAATTTATCATATA-TCCTAA
1 TTTAAATTTATCATATACT-ATAA
*
49018670 TTTAAAATTTATCATGTACTATAA
1 TTT-AAATTTATCATATACTATAA
*
49018694 TTTTAAACTTATCATAT
1 -TTTAAATTTATCATAT
49018711 TATTATTTAG
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
21 6 0.12
22 9 0.17
23 6 0.12
24 27 0.52
25 4 0.08
ACGTcount: A:0.41, C:0.09, G:0.01, T:0.48
Consensus pattern (23 bp):
TTTAAATTTATCATATACTATAA
Found at i:49020365 original size:22 final size:24
Alignment explanation
Indices: 49020329--49020373 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
49020319 ATGAAAAAAA
*
49020329 ACATTTGTATTTCTCAATTCTCAC
1 ACATTTGTATTTCTCAATACTCAC
49020353 ACATTT-T-TTTCTCAATACTCA
1 ACATTTGTATTTCTCAATACTCA
49020374 TATGTTAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 13 0.65
23 1 0.05
24 6 0.30
ACGTcount: A:0.27, C:0.24, G:0.02, T:0.47
Consensus pattern (24 bp):
ACATTTGTATTTCTCAATACTCAC
Found at i:49021577 original size:26 final size:27
Alignment explanation
Indices: 49021548--49021612 Score: 89
Period size: 26 Copynumber: 2.5 Consensus size: 27
49021538 ACATGCATAT
*
49021548 TATTAAAAAAATACTC-ACCGCATGCA
1 TATTAAAAAAATACTCAACAGCATGCA
* *
49021574 TATT-AAAAAATAGTCAACAGCATGTA
1 TATTAAAAAAATACTCAACAGCATGCA
49021600 TATTAAAAAAATA
1 TATTAAAAAAATA
49021613 GTCATACACA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
25 10 0.29
26 16 0.47
27 8 0.24
ACGTcount: A:0.52, C:0.14, G:0.08, T:0.26
Consensus pattern (27 bp):
TATTAAAAAAATACTCAACAGCATGCA
Found at i:49023390 original size:15 final size:15
Alignment explanation
Indices: 49023371--49023415 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
49023361 CTTTCAAATG
*
49023371 CATCACTACCAGATA
1 CATCACTACCAGACA
*
49023386 TATCACTACCAGACA
1 CATCACTACCAGACA
*
49023401 CGTCACTACCAGACA
1 CATCACTACCAGACA
49023416 TTTCTTCTTC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.38, C:0.36, G:0.09, T:0.18
Consensus pattern (15 bp):
CATCACTACCAGACA
Found at i:49023867 original size:6 final size:6
Alignment explanation
Indices: 49023858--49023921 Score: 92
Period size: 6 Copynumber: 10.7 Consensus size: 6
49023848 AAATAACCCT
* * *
49023858 AAATCA AAATTA AAATCG AAATCA AAATCA AAATCT AAATCA AAATCA
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA
*
49023906 AAATCA AAAACA AAAT
1 AAATCA AAATCA AAAT
49023922 TGAAATCGAA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.66, C:0.14, G:0.02, T:0.19
Consensus pattern (6 bp):
AAATCA
Found at i:49023881 original size:18 final size:18
Alignment explanation
Indices: 49023858--49023933 Score: 98
Period size: 18 Copynumber: 4.2 Consensus size: 18
49023848 AAATAACCCT
*
49023858 AAATCAAAATTAAAATCG
1 AAATCAAAATCAAAATCG
*
49023876 AAATCAAAATCAAAATCT
1 AAATCAAAATCAAAATCG
*
49023894 AAATCAAAATCAAAATCA
1 AAATCAAAATCAAAATCG
* **
49023912 AAAACAAAATTGAAATCG
1 AAATCAAAATCAAAATCG
49023930 AAAT
1 AAAT
49023934 AACCCTAAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 50 1.00
ACGTcount: A:0.63, C:0.13, G:0.04, T:0.20
Consensus pattern (18 bp):
AAATCAAAATCAAAATCG
Found at i:49035526 original size:11 final size:11
Alignment explanation
Indices: 49035510--49035546 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
49035500 CAAGAAATAC
49035510 CAGCAAATCAA
1 CAGCAAATCAA
49035521 CAGCAAATCAA
1 CAGCAAATCAA
*
49035532 CAACAAATCAA
1 CAGCAAATCAA
49035543 CAGC
1 CAGC
49035547 TTCAAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.54, C:0.30, G:0.08, T:0.08
Consensus pattern (11 bp):
CAGCAAATCAA
Found at i:49043247 original size:50 final size:50
Alignment explanation
Indices: 49043126--49043652 Score: 533
Period size: 50 Copynumber: 10.7 Consensus size: 50
49043116 TAGTATATCG
* * *
49043126 GTGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCACTCATC--TC-
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACTCCTCTGTCT
* * * * * *
49043173 GAGCTGATGCCATGTCCCATACATGGTCTTACACTGACTCTCCTCTATCC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACTCCTCTGTCT
* * *
49043223 ATGCCGATGACATGTCCCAGACATGGTCTTACACT-AGCACTCATC--TC-
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CACTCCTCTGTCT
* * * * *
49043270 GAGCTGATGCCATGTCCCAGACATGGTCTTACACTAACTCTCCTCGGTCT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACTCCTCTGTCT
* * *
49043320 GTGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCACTCATC--TC-
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACTCCTCTGTCT
* * * * *
49043367 GAGCCGATGCCATGTCCCAAACATGGTCTTACACTAACTCTCCTCTGTCC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACTCCTCTGTCT
* * * *
49043417 GTACCGATGCCATGTTCCAGACATGGTCTTACACT-AGCACTCTTCGGTCT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CACTCCTCTGTCT
*
49043467 GTGCCGATGCCATATCCCAGACATGGTCTTACACT-AGCACTCCT-TGATCT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CACTCCTCTG-TCT
** * * * *
49043517 GTGCTAATGCCATGTCCCAGATATGGTCTTACATTGACTCTCCTCTGTCC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACTCCTCTGTCT
* * *
49043567 GTGCCGATGCCATGTTCTAGACATGGTCTTACACT-AGCACTCCTCGGTCT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CACTCCTCTGTCT
* * *
49043617 GTGCCAATGTCATGTCCCTGACATGGTCTTACACTG
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTG
49043653 GCACATTCAC
Statistics
Matches: 395, Mismatches: 68, Indels: 30
0.80 0.14 0.06
Matches are distributed among these distances:
47 113 0.29
48 5 0.01
49 10 0.03
50 264 0.67
51 3 0.01
ACGTcount: A:0.20, C:0.32, G:0.19, T:0.29
Consensus pattern (50 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACACTCCTCTGTCT
Found at i:49043248 original size:97 final size:96
Alignment explanation
Indices: 49043126--49043656 Score: 632
Period size: 97 Copynumber: 5.4 Consensus size: 96
49043116 TAGTATATCG
* *
49043126 GTGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCACTCATCTCGAGCTGATGCCATGTCCC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATCTCGAGCCGATGCCATGTCCC
* * *
49043191 ATACATGGTCTTACACTGACTCTCCTCTATCC
66 AGACATGGTCTTACACT-ACTCTCCTCTGTCT
* * * *
49043223 ATGCCGATGACATGTCCCAGACATGGTCTTACACTAGCACTCATCTCGAGCTGATGCCATGTCCC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATCTCGAGCCGATGCCATGTCCC
*
49043288 AGACATGGTCTTACACTAACTCTCCTCGGTCT
66 AGACATGGTCTTACACT-ACTCTCCTCTGTCT
*
49043320 GTGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCACTCATCTCGAGCCGATGCCATGTCCC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATCTCGAGCCGATGCCATGTCCC
* *
49043385 AAACATGGTCTTACACTAACTCTCCTCTGTCC
66 AGACATGGTCTTACACT-ACTCTCCTCTGTCT
* * * * * *
49043417 GTACCGATGCCATGTTCCAGACATGGTCTTACACTAGCACTCTTCGGTCTGTGCCGATGCCATAT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATC--TC-GAGCCGATGCCATGT
*
49043482 CCCAGACATGGTCTTACACTAGCACTCCT-TGATCT
63 CCCAGACATGGTCTTACACTA-CTCTCCTCTG-TCT
** * * * * * *
49043517 GTGCTAATGCCATGTCCCAGATATGGTCTTACATTGACTCTCCTCTGTCCGTGCCGATGCCATGT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATC--T-CGAGCCGATGCCATGT
* * * *
49043582 TCTAGACATGGTCTTACACTAGCACTCCTCGGTCT
63 CCCAGACATGGTCTTACACTA-CTCTCCTCTGTCT
* * *
49043617 GTGCCAATGTCATGTCCCTGACATGGTCTTACACTGGCAC
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAC
49043657 ATTCACTGCC
Statistics
Matches: 378, Mismatches: 49, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
97 217 0.57
99 5 0.01
100 154 0.41
101 2 0.01
ACGTcount: A:0.20, C:0.32, G:0.19, T:0.29
Consensus pattern (96 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATCTCGAGCCGATGCCATGTCCC
AGACATGGTCTTACACTACTCTCCTCTGTCT
Found at i:49047143 original size:41 final size:41
Alignment explanation
Indices: 49047094--49047218 Score: 162
Period size: 41 Copynumber: 3.0 Consensus size: 41
49047084 CACAAATCTA
**
49047094 GATATGATACACCGGCACGAAGCCTGCTAGGCATAAAGCCT
1 GATATGATACACCGGCATAAAGCCTGCTAGGCATAAAGCCT
* * *
49047135 GATCTGATACACCAGCATAAAGCCTGCTAGGAATAAAGCCT
1 GATATGATACACCGGCATAAAGCCTGCTAGGCATAAAGCCT
** *
49047176 GATAAAACT-CACCGGCATAAAGCCTGCTAGGCACAAAGCCT
1 GATATGA-TACACCGGCATAAAGCCTGCTAGGCATAAAGCCT
49047217 GA
1 GA
49047219 ATATCACTAA
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
41 71 0.99
42 1 0.01
ACGTcount: A:0.35, C:0.26, G:0.22, T:0.17
Consensus pattern (41 bp):
GATATGATACACCGGCATAAAGCCTGCTAGGCATAAAGCCT
Found at i:49051010 original size:50 final size:50
Alignment explanation
Indices: 49050935--49051127 Score: 269
Period size: 50 Copynumber: 3.8 Consensus size: 50
49050925 ATTTGGGTAA
49050935 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* *
49050985 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * * *
49051035 AGAAGTCCCCCGTAAGACCATGTCTGGGATATGGCATGGGCACCGATATG
1 AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * *
49051085 AGAACATCCTATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA
49051128 TGTTATTATC
Statistics
Matches: 125, Mismatches: 17, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 93 0.74
51 32 0.26
ACGTcount: A:0.26, C:0.23, G:0.31, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:49051070 original size:100 final size:101
Alignment explanation
Indices: 49050939--49051127 Score: 299
Period size: 100 Copynumber: 1.9 Consensus size: 101
49050929 GGGTAAAGAG
* **
49050939 GTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAG-AGGTCCCATGTAAGAC
1 GTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACATCCCATGTAAGAC
49051003 CATGTCTGGGACATGGCGTTGGCACCGAGATGAGAA
66 CATGTCTGGGACATGGCGTTGGCACCGAGATGAGAA
* * * *
49051039 GTCCCCCGTAAGACCATGTCTGGGATATGGCATGGGCACCGATATGAGAACATCCTATGTAAGAC
1 GTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACATCCCATGTAAGAC
*
49051104 CATGTCTGGGACATGGCTTTGGCA
66 CATGTCTGGGACATGGCGTTGGCA
49051128 TGTTATTATC
Statistics
Matches: 80, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
100 44 0.55
101 36 0.45
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.21
Consensus pattern (101 bp):
GTCCCACGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACATCCCATGTAAGAC
CATGTCTGGGACATGGCGTTGGCACCGAGATGAGAA
Found at i:49051684 original size:31 final size:31
Alignment explanation
Indices: 49051649--49051707 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
49051639 GATATGTAAG
49051649 TATCTGATGATGAATGGTTGTTAAAATGGCA
1 TATCTGATGATGAATGGTTGTTAAAATGGCA
49051680 TATCTGATGATGAATGGTTGTTAAAATG
1 TATCTGATGATGAATGGTTGTTAAAATG
49051708 ACTAAGTATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.32, C:0.05, G:0.25, T:0.37
Consensus pattern (31 bp):
TATCTGATGATGAATGGTTGTTAAAATGGCA
Found at i:49052793 original size:40 final size:40
Alignment explanation
Indices: 49052749--49052890 Score: 137
Period size: 40 Copynumber: 3.6 Consensus size: 40
49052739 AAAACACACC
* *
49052749 AGTTTGGCACCCAGTGTCTCATCGGATAATTCGAAGTAAT
1 AGTTTGACACCCAGTGTCTCATCGGATAATCCGAAGTAAT
* * *
49052789 AGTTTGACACCTAGTGTCTCATCGGCTAAACCGAAGTAA-
1 AGTTTGACACCCAGTGTCTCATCGGATAATCCGAAGTAAT
* * * * * *
49052828 A--TTGGCACCCAATGCCTCATCGAATTAATCCAAAGTAGT
1 AGTTTGACACCCAGTGTCTCATCGGA-TAATCCGAAGTAAT
**
49052867 AAATTGACACCCAGTGTCTCATCG
1 AGTTTGACACCCAGTGTCTCATCG
49052891 ACTCGAAGTC
Statistics
Matches: 81, Mismatches: 17, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
37 17 0.21
38 10 0.12
39 2 0.02
40 34 0.42
41 18 0.22
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (40 bp):
AGTTTGACACCCAGTGTCTCATCGGATAATCCGAAGTAAT
Found at i:49053846 original size:5 final size:5
Alignment explanation
Indices: 49053838--49053911 Score: 148
Period size: 5 Copynumber: 14.8 Consensus size: 5
49053828 ATTTTATTAT
49053838 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
49053888 TATAA TATAA TATAA TATAA TATA
1 TATAA TATAA TATAA TATAA TATA
49053912 TACTTATGTA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 69 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:49058546 original size:2 final size:2
Alignment explanation
Indices: 49058539--49058567 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
49058529 TAATAACTCT
49058539 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
49058568 TGAAAAGTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:49065866 original size:124 final size:118
Alignment explanation
Indices: 49065646--49065893 Score: 329
Period size: 124 Copynumber: 2.1 Consensus size: 118
49065636 TGCAATAGCA
* * * *
49065646 AATTAAATAATCAAATTAATGTATTTACTTAGCATTTCACAAAGAGGTTCATTTGAATAATATTG
1 AATTAAATAATCAAATTAATGTATTTACTTAGCATTTCACAAACAGGTTCATCTGAAGAACATTG
* * *
49065711 TGATGCCATCCAATTAAAATAAGATGGATTACCATATTATATT-TCAACCGTTT
66 TGATACCATCCAATTAAAATAAGATGAATTACCATATTAT-TTGTCAACAGTTT
*
49065764 AATTAAATAATCAAATTAATGTATTTAGCTTCTATTGACATTTCACCAACAGGTTCATCTGAAGA
1 AATTAAATAATCAAATTAATGTATTTA-C-T-TA--G-CATTTCACAAACAGGTTCATCTGAAGA
*
49065829 ACATTGTGATACCATCCAATTAAAATAA-ATTGAATTACCATATTATTTGTCAATAGTTT
60 ACATTGTGATACCATCCAATTAAAATAAGA-TGAATTACCATATTATTTGTCAACAGTTT
49065888 AATTAA
1 AATTAA
49065894 TTTCAAATTA
Statistics
Matches: 113, Mismatches: 9, Indels: 10
0.86 0.07 0.08
Matches are distributed among these distances:
118 27 0.24
119 1 0.01
120 1 0.01
121 2 0.02
123 4 0.04
124 78 0.69
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.37
Consensus pattern (118 bp):
AATTAAATAATCAAATTAATGTATTTACTTAGCATTTCACAAACAGGTTCATCTGAAGAACATTG
TGATACCATCCAATTAAAATAAGATGAATTACCATATTATTTGTCAACAGTTT
Found at i:49072641 original size:34 final size:34
Alignment explanation
Indices: 49072603--49072671 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
49072593 AATGAGATTC
49072603 TATTGGAACAAGTTGATAATAATGATGAATTTTA
1 TATTGGAACAAGTTGATAATAATGATGAATTTTA
*
49072637 TATTGGAACAAGTTGGTAATAATGATGAATTTTA
1 TATTGGAACAAGTTGATAATAATGATGAATTTTA
49072671 T
1 T
49072672 CAAGAATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.39, C:0.03, G:0.19, T:0.39
Consensus pattern (34 bp):
TATTGGAACAAGTTGATAATAATGATGAATTTTA
Found at i:49076688 original size:43 final size:43
Alignment explanation
Indices: 49076612--49076754 Score: 112
Period size: 43 Copynumber: 3.2 Consensus size: 43
49076602 TTTAAAAACC
*
49076612 ATAAAAATAAAATAAAAACAAAAATCATA-ATAATTATAAAATAATT
1 ATAAAAAT--AATAAAAATAAAAAT-ATATATAATTATAAAA-AATT
* * *
49076658 ATAAAAAT-ATAAAAATGAAAATATATATAATTACAAAAAGTT
1 ATAAAAATAATAAAAATAAAAATATATATAATTATAAAAAATT
** * *
49076700 CA-AAAAATAATAAAAAATTTTAAATATATATAATATTTAAAAAAAT
1 -ATAAAAATAAT-AAAAA-TAAAAATATATATAAT-TATAAAAAATT
*
49076746 ATATAAATA
1 ATAAAAATA
49076755 TCTACAATTT
Statistics
Matches: 79, Mismatches: 11, Indels: 14
0.76 0.11 0.13
Matches are distributed among these distances:
42 12 0.15
43 26 0.33
44 5 0.06
45 15 0.19
46 21 0.27
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.29
Consensus pattern (43 bp):
ATAAAAATAATAAAAATAAAAATATATATAATTATAAAAAATT
Found at i:49077127 original size:16 final size:16
Alignment explanation
Indices: 49077110--49077142 Score: 57
Period size: 16 Copynumber: 2.0 Consensus size: 16
49077100 CTTTTTGCAA
49077110 TTTATATAATTTTTAAT
1 TTTA-ATAATTTTTAAT
49077127 TTTAATAATTTTTAAT
1 TTTAATAATTTTTAAT
49077143 ATTTTTTCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTAATAATTTTTAAT
Found at i:49084130 original size:2 final size:2
Alignment explanation
Indices: 49084123--49084164 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
49084113 TATGAAATTG
49084123 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
49084164 A
1 A
49084165 GTAGTAATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:49085889 original size:27 final size:27
Alignment explanation
Indices: 49085839--49085890 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
49085829 TGAATCAATT
49085839 TTTTTATTTTTTAATATATATTTTTTA
1 TTTTTATTTTTTAATATATATTTTTTA
49085866 TTTTTATGATTTTTAATA-AT-TTTTT
1 TTTTTAT--TTTTTAATATATATTTTT
49085891 CAATTGAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
27 12 0.52
28 2 0.09
29 9 0.39
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (27 bp):
TTTTTATTTTTTAATATATATTTTTTA
Found at i:49086649 original size:2 final size:2
Alignment explanation
Indices: 49086634--49086671 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
49086624 AAAACCATTA
*
49086634 AT AT AT AC AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
49086672 AAAGAAATGA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:49093758 original size:43 final size:43
Alignment explanation
Indices: 49093698--49093931 Score: 369
Period size: 43 Copynumber: 5.4 Consensus size: 43
49093688 TGTCCCAGAC
* * ** *
49093698 ATGGTCTTACATGGAAATATCGTATCGATGTCAATAGCCCAGCT
1 ATGGTCTTACA-CGAAATCTCAAATCGATGCCAATAGCCCAGCT
*
49093742 ATGGTCTTCCACGAAATCTCAAATCGATGCCAATAGCCCAGCT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
*
49093785 ATGGTCTTACACAAAATCTCAAATCGATGCCAATAGCCCAGCT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
*
49093828 ATGGTCTTACACAAAATCTCAAATCGATGCCAATAGCCCAGCT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
*
49093871 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAACT
1 ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
*
49093914 ATGGTCTTACACGGAATC
1 ATGGTCTTACACGAAATC
49093932 ACACCTCGGA
Statistics
Matches: 179, Mismatches: 11, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
43 169 0.94
44 10 0.06
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.25
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCT
Found at i:49094090 original size:31 final size:31
Alignment explanation
Indices: 49094049--49094163 Score: 160
Period size: 31 Copynumber: 3.7 Consensus size: 31
49094039 ATCCAATGCT
*
49094049 CAAATC-AATTCGGCAATATATATCCATATA
1 CAAATCAAATTCGGCAATGTATATCCATATA
* * *
49094079 CGAATCAAATTCGACAATGTATAACCATATA
1 CAAATCAAATTCGGCAATGTATATCCATATA
*
49094110 CAAATCAAATTCGGCAATGTATATCTATATA
1 CAAATCAAATTCGGCAATGTATATCCATATA
**
49094141 CAAATCAAATTCAACAATGTATA
1 CAAATCAAATTCGGCAATGTATA
49094164 AAACATATAC
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
30 5 0.07
31 69 0.93
ACGTcount: A:0.45, C:0.18, G:0.08, T:0.29
Consensus pattern (31 bp):
CAAATCAAATTCGGCAATGTATATCCATATA
Found at i:49094183 original size:62 final size:62
Alignment explanation
Indices: 49094049--49094174 Score: 191
Period size: 62 Copynumber: 2.0 Consensus size: 62
49094039 ATCCAATGCT
* * *
49094049 CAAATC-AATTCGGCAATATATATCCATATACGAATCAAATTCGACAATGTATAACCATATA
1 CAAATCAAATTCGGCAATATATATCCATATACAAATCAAATTCAACAATGTATAAACATATA
* *
49094110 CAAATCAAATTCGGCAATGTATATCTATATACAAATCAAATTCAACAATGTATAAAACATATA
1 CAAATCAAATTCGGCAATATATATCCATATACAAATCAAATTCAACAATGTAT-AAACATATA
49094173 CA
1 CA
49094175 TTTAAATTCA
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
61 6 0.10
62 42 0.72
63 10 0.17
ACGTcount: A:0.47, C:0.18, G:0.07, T:0.28
Consensus pattern (62 bp):
CAAATCAAATTCGGCAATATATATCCATATACAAATCAAATTCAACAATGTATAAACATATA
Found at i:49096810 original size:31 final size:33
Alignment explanation
Indices: 49096775--49096844 Score: 99
Period size: 33 Copynumber: 2.2 Consensus size: 33
49096765 TCCTTGGAAC
49096775 TCCAA-AAAGT-TAATTCTTTATGTAACACTCT
1 TCCAAGAAAGTCTAATTCTTTATGTAACACTCT
* **
49096806 TCCAAGTACTTCTAATTCTTTATGTAACACTCT
1 TCCAAGAAAGTCTAATTCTTTATGTAACACTCT
49096839 TCCAAG
1 TCCAAG
49096845 TACTTCTACC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
31 5 0.15
32 2 0.06
33 27 0.79
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (33 bp):
TCCAAGAAAGTCTAATTCTTTATGTAACACTCT
Found at i:49096822 original size:33 final size:33
Alignment explanation
Indices: 49096785--49096852 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
49096775 TCCAAAAAGT
49096785 TAATTCTTTATGTAACACTCTTCCAAGTACTTC
1 TAATTCTTTATGTAACACTCTTCCAAGTACTTC
49096818 TAATTCTTTATGTAACACTCTTCCAAGTACTTC
1 TAATTCTTTATGTAACACTCTTCCAAGTACTTC
49096851 TA
1 TA
49096853 CCTTGTCTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.28, C:0.24, G:0.06, T:0.43
Consensus pattern (33 bp):
TAATTCTTTATGTAACACTCTTCCAAGTACTTC
Found at i:49104296 original size:52 final size:52
Alignment explanation
Indices: 49104239--49104437 Score: 227
Period size: 52 Copynumber: 3.8 Consensus size: 52
49104229 TTTTATGAAC
* * *
49104239 TTTGAATCTATTGTTTATATGTTCAAATCGATTGTCATGTTGGAATACTACT
1 TTTGAATCAATTGTTTATATGTTTAAATCGATTGTCATGTTGGAATACTTCT
** * * * *
49104291 TTTGAATTGATTGTTTATATGTTTAAATCGACTGTTATGTTAGAATATTGCTTTT
1 TTTGAATCAATTGTTTATATGTTTAAATCGATTGTCATGTTGGAATA---CTTCT
* * * ** *
49104346 TTTAAATAAACTGTTTATATGTTTAAATTAATTGTTATGTTGGAATACTTCT
1 TTTGAATCAATTGTTTATATGTTTAAATCGATTGTCATGTTGGAATACTTCT
*
49104398 TTTGAATCAATTGTTTATATGTTTAAATCGATTATCATGT
1 TTTGAATCAATTGTTTATATGTTTAAATCGATTGTCATGT
49104438 AGCACATCTA
Statistics
Matches: 120, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
52 78 0.65
55 42 0.35
ACGTcount: A:0.29, C:0.08, G:0.14, T:0.50
Consensus pattern (52 bp):
TTTGAATCAATTGTTTATATGTTTAAATCGATTGTCATGTTGGAATACTTCT
Found at i:49106298 original size:43 final size:43
Alignment explanation
Indices: 49106235--49106399 Score: 176
Period size: 44 Copynumber: 3.9 Consensus size: 43
49106225 TACCGTAATA
* * *
49106235 ATGCC-ATATCCCAGATATGGTCTTACATGTAATCTCATATCG
1 ATGCCAATAGCCCAGACATGGTCTTACACGTAATCTCATATCG
* * * *
49106277 ATGCCAATAGCCCAGCCATGGTCTTACAAAGAAATCACATATCG
1 ATGCCAATAGCCCAGACATGGTCTTAC-ACGTAATCTCATATCG
*
49106321 ATGCCAAT-GTCCCAGACATGGTCTTACACG-AATTCTCATATTG
1 ATGCCAATAG-CCCAGACATGGTCTTACACGTAA-TCTCATATCG
* **
49106364 ATGCC-ATATCCCAGTTATGGTCTTACACGTAATCTC
1 ATGCCAATAGCCCAGACATGGTCTTACACGTAATCTC
49106400 GGTAACCCTA
Statistics
Matches: 104, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
42 31 0.30
43 36 0.35
44 37 0.36
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (43 bp):
ATGCCAATAGCCCAGACATGGTCTTACACGTAATCTCATATCG
Found at i:49109703 original size:46 final size:46
Alignment explanation
Indices: 49109600--49109898 Score: 507
Period size: 46 Copynumber: 6.6 Consensus size: 46
49109590 TACGTATGAT
* * *
49109600 CACTAATCAC-TTGTC-CCTGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
49109643 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
49109689 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
49109735 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* *
49109781 CACTTATCACTTTGTAACTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
49109827 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
49109873 CACTTATCACTTTGTCAC-TGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
49109899 AGTACTCAAA
Statistics
Matches: 246, Mismatches: 7, Indels: 4
0.96 0.03 0.02
Matches are distributed among these distances:
43 9 0.04
44 5 0.02
45 28 0.11
46 204 0.83
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.33
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:49114855 original size:12 final size:12
Alignment explanation
Indices: 49114838--49114871 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
49114828 GTTATTTATT
49114838 TTCTTTTGCTCG
1 TTCTTTTGCTCG
*
49114850 TTCTTTGGCTCG
1 TTCTTTTGCTCG
49114862 TTCTTTTGCT
1 TTCTTTTGCT
49114872 TAAAATGCGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.00, C:0.24, G:0.18, T:0.59
Consensus pattern (12 bp):
TTCTTTTGCTCG
Found at i:49118075 original size:49 final size:49
Alignment explanation
Indices: 49118018--49118121 Score: 145
Period size: 49 Copynumber: 2.1 Consensus size: 49
49118008 TCATGTGTTA
* * ** * *
49118018 TAATTTTATACAGTGTTGAGTTTTTTATTCATGATATTGAACTCAATTT
1 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTCAATTT
*
49118067 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
1 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTCAATTT
49118116 TAATTT
1 TAATTT
49118122 GCTTTTTTTC
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.31, C:0.09, G:0.10, T:0.51
Consensus pattern (49 bp):
TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTCAATTT
Found at i:49119619 original size:26 final size:28
Alignment explanation
Indices: 49119477--49119628 Score: 88
Period size: 28 Copynumber: 5.6 Consensus size: 28
49119467 TAATAAAGTA
49119477 TATTA-TAAATTATATTTAA-TAATAAT
1 TATTATTAAATTATATTTAATTAATAAT
* *
49119503 TA-T-TTAAATTATATTTTA-TAGT-AT
1 TATTATTAAATTATATTTAATTAATAAT
* * * * *
49119527 TATATATTATGATTTTAGTAAATTCAT-AT
1 TAT-TATTA-AATTATATTTAATTAATAAT
* ** * * * *
49119556 AAGAATAAGAATTTTATTTAATTATTTAT
1 TATTATTA-AATTATATTTAATTAATAAT
49119585 TATTATTAAATTATATTTAA-TAATAAT
1 TATTATTAAATTATATTTAATTAATAAT
49119612 TATT-TTAAATTATATTT
1 TATTATTAAATTATATTT
49119629 TAGTATTATA
Statistics
Matches: 93, Mismatches: 26, Indels: 14
0.70 0.20 0.11
Matches are distributed among these distances:
24 4 0.04
25 17 0.18
26 16 0.17
27 12 0.13
28 33 0.35
29 11 0.12
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (28 bp):
TATTATTAAATTATATTTAATTAATAAT
Found at i:49119787 original size:39 final size:41
Alignment explanation
Indices: 49119744--49119839 Score: 124
Period size: 44 Copynumber: 2.3 Consensus size: 41
49119734 TGCTATTGCA
*
49119744 CCTCTATTCCATTCAACCAAACACAAGAA-TACC-ATTACG
1 CCTCTATTCCATTCAACCAAACAAAAGAATTACCTATTACG
49119783 CCTCTATTCCATTACATTCAACCAAACAAAAGAATTACCTATTACG
1 CCTCTATT-C----CATTCAACCAAACAAAAGAATTACCTATTACG
49119829 CCTCTATTCCA
1 CCTCTATTCCA
49119840 ATACAGCGAA
Statistics
Matches: 49, Mismatches: 1, Indels: 12
0.79 0.02 0.19
Matches are distributed among these distances:
39 8 0.16
40 1 0.02
41 2 0.04
44 19 0.39
45 5 0.10
46 14 0.29
ACGTcount: A:0.36, C:0.32, G:0.04, T:0.27
Consensus pattern (41 bp):
CCTCTATTCCATTCAACCAAACAAAAGAATTACCTATTACG
Done.