Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62769430
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1067035 characters in sequence are not A, C, G, or T
File 168 of 206
Found at i:51153709 original size:18 final size:18
Alignment explanation
Indices: 51153688--51153722 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51153678 TTTTGTTTTT
*
51153688 TATTTTTATTTTTTTATA
1 TATTTTTATTTATTTATA
*
51153706 TATTTTTGTTTATTTAT
1 TATTTTTATTTATTTAT
51153723 TTGATTTGGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (18 bp):
TATTTTTATTTATTTATA
Found at i:51157934 original size:12 final size:12
Alignment explanation
Indices: 51157919--51157958 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
51157909 AAAAAAGACG
51157919 AAAAATAAATGA
1 AAAAATAAATGA
51157931 AAAAATAAGAATGA
1 AAAAAT-A-AATGA
*
51157945 AAAAATAAAAGA
1 AAAAATAAATGA
51157957 AA
1 AA
51157959 TTGAAAGGGC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
12 12 0.48
13 2 0.08
14 11 0.44
ACGTcount: A:0.78, C:0.00, G:0.10, T:0.12
Consensus pattern (12 bp):
AAAAATAAATGA
Found at i:51157957 original size:16 final size:14
Alignment explanation
Indices: 51157926--51157952 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
51157916 ACGAAAAATA
51157926 AATGAAAAAATAAG
1 AATGAAAAAATAAG
51157940 AATGAAAAAATAA
1 AATGAAAAAATAA
51157953 AAGAAATTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.15
Consensus pattern (14 bp):
AATGAAAAAATAAG
Found at i:51158015 original size:13 final size:13
Alignment explanation
Indices: 51157999--51158030 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
51157989 ATAAGAGAGA
51157999 AATATAAATAAAG
1 AATATAAATAAAG
51158012 AATATAAATAAAG
1 AATATAAATAAAG
51158025 AA-ATAA
1 AATATAA
51158031 GCAAGGGGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (13 bp):
AATATAAATAAAG
Found at i:51165008 original size:18 final size:19
Alignment explanation
Indices: 51164978--51165016 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
51164968 GTAATAAAAT
*
51164978 ATGCATAATAAATATTGAA
1 ATGCATAATAAATATTAAA
51164997 ATGCATAA-AAATATTAAA
1 ATGCATAATAAATATTAAA
51165015 AT
1 AT
51165017 AAAGTTTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.56, C:0.05, G:0.08, T:0.31
Consensus pattern (19 bp):
ATGCATAATAAATATTAAA
Found at i:51165623 original size:12 final size:12
Alignment explanation
Indices: 51165588--51165626 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
51165578 TTCTTATTGC
**
51165588 AAATAATATTCA
1 AAATAATATTTT
51165600 AAATAAATATTTT
1 AAAT-AATATTTT
51165613 AAATAATATTTT
1 AAATAATATTTT
51165625 AA
1 AA
51165627 TACATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 14 0.58
13 10 0.42
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (12 bp):
AAATAATATTTT
Found at i:51167505 original size:16 final size:16
Alignment explanation
Indices: 51167484--51167533 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
51167474 ATTTTATTTA
51167484 TTTTTCAAAAATTATT
1 TTTTTCAAAAATTATT
51167500 TTTTTCAAATAA--ATT
1 TTTTTCAAA-AATTATT
**
51167515 TTTTTGTAAAATTATT
1 TTTTTCAAAAATTATT
51167531 TTT
1 TTT
51167534 CGAAAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
14 2 0.07
15 10 0.34
16 15 0.52
17 2 0.07
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (16 bp):
TTTTTCAAAAATTATT
Found at i:51167540 original size:15 final size:15
Alignment explanation
Indices: 51167481--51167545 Score: 55
Period size: 15 Copynumber: 4.3 Consensus size: 15
51167471 TAAATTTTAT
51167481 TTATTTTTC-AAAAA
1 TTATTTTTCGAAAAA
*
51167495 TTATTTTTTTCAAATAAA
1 TTA--TTTTTCGAA-AAA
*
51167513 TT-TTTTT-GTAAAA
1 TTATTTTTCGAAAAA
51167526 TTATTTTTCGAAAAA
1 TTATTTTTCGAAAAA
*
51167541 ATATT
1 TTATT
51167546 CAATAAAATA
Statistics
Matches: 41, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
13 5 0.12
14 9 0.22
15 14 0.34
16 6 0.15
17 2 0.05
18 5 0.12
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (15 bp):
TTATTTTTCGAAAAA
Found at i:51167594 original size:25 final size:25
Alignment explanation
Indices: 51167544--51167596 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
51167534 CGAAAAAATA
*
51167544 TTCAATAAAATAATTTGAATTTTTT
1 TTCAATAAAATAATATGAATTTTTT
*
51167569 TTCAA-AAAATAA-ATGAAATTTATT
1 TTCAATAAAATAATATG-AATTTTTT
51167593 TTCA
1 TTCA
51167597 GTTGAAATCG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 2 0.08
24 18 0.72
25 5 0.20
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (25 bp):
TTCAATAAAATAATATGAATTTTTT
Found at i:51174264 original size:69 final size:69
Alignment explanation
Indices: 51174173--51174605 Score: 731
Period size: 69 Copynumber: 6.3 Consensus size: 69
51174163 CAGCGCCTCT
* * * *
51174173 TATATACAACAAATGGGTAGCATATACATGCCAAATTTAACAGCACTTTTACACCAAAATTTAAC
1 TATATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
51174238 AGCA
66 AGCA
* **
51174242 TATATACAGTAAATAGGCAGCATATACATATAAAATTTAACAGCACTTTTACACCAAAATTTAAC
1 TATATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
51174307 AGCA
66 AGCA
*
51174311 TATATACAGCAAATAGGCAGCATATACATACCAAATTTAATAGCACTTTTACACCAAAATTTTAA
1 TATATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAA-TTTAA
51174376 CAGCA
65 CAGCA
* * * *
51174381 TACATACAGTAAATAGGCAGCATATACATACCAAATTTAACAGTACTTTTATACCAAAATTTAAC
1 TATATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
51174446 AGCA
66 AGCA
*
51174450 TATATACAACAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
1 TATATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
51174515 AGCA
66 AGCA
*
51174519 TATATACAACAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
1 TATATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
51174584 AGCA
66 AGCA
51174588 TATATACAGCAAATAGGC
1 TATATACAGCAAATAGGC
51174606 TTAAATATAA
Statistics
Matches: 341, Mismatches: 22, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
69 277 0.81
70 64 0.19
ACGTcount: A:0.45, C:0.20, G:0.09, T:0.26
Consensus pattern (69 bp):
TATATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAAC
AGCA
Found at i:51174549 original size:208 final size:207
Alignment explanation
Indices: 51174176--51174605 Score: 725
Period size: 208 Copynumber: 2.1 Consensus size: 207
51174166 CGCCTCTTAT
* * * *
51174176 ATACAACAAATGGGTAGCATATACATGCCAAATTTAACAGCACTTTTACACCAAAATTTAACAGC
1 ATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAACAGC
** *
51174241 ATATATACAGTAAATAGGCAGCATATACATATAAAATTTAACAGCACTTTTACACCAAAATTTAA
66 ATATATACAACAAATAGGCAGCATATACATACAAAATTTAACAGCACTTTTACACCAAAATTTAA
* *
51174306 CAGCATATATACAGCAAATAGGCAGCATATACATACCAAATTTAATAGCACTTTTACACCAAAAT
131 CAGCATATATACAACAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAA-
51174371 TTTAACAGCATAC
195 TTTAACAGCATAC
* * *
51174384 ATACAGTAAATAGGCAGCATATACATACCAAATTTAACAGTACTTTTATACCAAAATTTAACAGC
1 ATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAACAGC
*
51174449 ATATATACAACAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAA
66 ATATATACAACAAATAGGCAGCATATACATACAAAATTTAACAGCACTTTTACACCAAAATTTAA
51174514 CAGCATATATACAACAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAAT
131 CAGCATATATACAACAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAAT
*
51174579 TTAACAGCATAT
196 TTAACAGCATAC
51174591 ATACAGCAAATAGGC
1 ATACAGCAAATAGGC
51174606 TTAAATATAA
Statistics
Matches: 207, Mismatches: 15, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
207 26 0.13
208 181 0.87
ACGTcount: A:0.45, C:0.20, G:0.09, T:0.26
Consensus pattern (207 bp):
ATACAGCAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAATTTAACAGC
ATATATACAACAAATAGGCAGCATATACATACAAAATTTAACAGCACTTTTACACCAAAATTTAA
CAGCATATATACAACAAATAGGCAGCATATACATACCAAATTTAACAGCACTTTTACACCAAAAT
TTAACAGCATAC
Found at i:51175411 original size:41 final size:41
Alignment explanation
Indices: 51175366--51175522 Score: 215
Period size: 41 Copynumber: 3.8 Consensus size: 41
51175356 TTGTATAAAA
* * * * *
51175366 CACCGGCATAAAGCCTACTAGGCACAAAGCCCGATACATTT
1 CACCGGCATAAAGCCTGCTAGGCATAAAGCCTGATATAATT
* * * *
51175407 CACCGGTACAAAGCCTGCTAGACATAAAGTCTGATATAATT
1 CACCGGCATAAAGCCTGCTAGGCATAAAGCCTGATATAATT
* *
51175448 CACCGGCATAGAGCCTGCTAGGCTTAAAGCCTGATATAATT
1 CACCGGCATAAAGCCTGCTAGGCATAAAGCCTGATATAATT
51175489 CACCGGCATAAAGCCTGCTAGGCATAAAGCCTGA
1 CACCGGCATAAAGCCTGCTAGGCATAAAGCCTGA
51175523 ACTTACAAAA
Statistics
Matches: 99, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 99 1.00
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (41 bp):
CACCGGCATAAAGCCTGCTAGGCATAAAGCCTGATATAATT
Found at i:51176519 original size:5 final size:5
Alignment explanation
Indices: 51176389--51176509 Score: 242
Period size: 5 Copynumber: 24.2 Consensus size: 5
51176379 ATAATAACTT
51176389 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
51176439 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
51176489 TATAA TATAA TATAA TATAA T
1 TATAA TATAA TATAA TATAA T
51176510 TTATATTATA
Statistics
Matches: 116, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 116 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAA
Found at i:51186667 original size:51 final size:51
Alignment explanation
Indices: 51186591--51186785 Score: 209
Period size: 51 Copynumber: 3.8 Consensus size: 51
51186581 TATGAGAACT
* * ***
51186591 CATGTGTAGTACTATGTGTAGGCTACTATGAGTATAAGATAGTTATGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGAGTACCGGATAGTTATGGTCA
* *
51186642 CATGTGTAGTACTAAGTGCATGCTACTATGTGTACCGGATAGCTT-TGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGAGTACCGGATAG-TTATGGTCA
* * *
51186693 CGTGTGTAGTACTATGTGCAGGCTACTA-CATGTACCGGATAG-TATTGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGA-GTACCGGATAGTTA-TGGTCA
* * *
51186744 CATGTGTAGTACTAAGTGTAGGATACTAT-ATGAACCGGATAG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGA-GTACCGGATAG
51186786 CATTGATTAT
Statistics
Matches: 122, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
49 1 0.01
51 119 0.98
52 2 0.02
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.32
Consensus pattern (51 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGAGTACCGGATAGTTATGGTCA
Found at i:51186771 original size:102 final size:102
Alignment explanation
Indices: 51186593--51186786 Score: 266
Period size: 102 Copynumber: 1.9 Consensus size: 102
51186583 TGAGAACTCA
* * *
51186593 TGTGTAGTACTATGTGTAGGCTACTATGAGTATAAGATAGTTATGGTCACATGTGTAGTACTAAG
1 TGTGTAGTACTATGTGCAGGCTACTATCAGTACAAGATAGTTATGGTCACATGTGTAGTACTAAG
* * * *
51186658 TGCATGCTACTATGTGTACCGGATAGCTTTGGTCACG
66 TGCAGGATACTATATGAACCGGATAGCTTTGGTCACG
**
51186695 TGTGTAGTACTATGTGCAGGCTACTA-CATGTACCGGATAG-TATTGGTCACATGTGTAGTACTA
1 TGTGTAGTACTATGTGCAGGCTACTATCA-GTACAAGATAGTTA-TGGTCACATGTGTAGTACTA
*
51186758 AGTGTAGGATACTATATGAACCGGATAGC
64 AGTGCAGGATACTATATGAACCGGATAGC
51186787 ATTGATTATG
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
101 3 0.04
102 77 0.96
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.32
Consensus pattern (102 bp):
TGTGTAGTACTATGTGCAGGCTACTATCAGTACAAGATAGTTATGGTCACATGTGTAGTACTAAG
TGCAGGATACTATATGAACCGGATAGCTTTGGTCACG
Found at i:51188203 original size:6 final size:6
Alignment explanation
Indices: 51188190--51188243 Score: 90
Period size: 6 Copynumber: 9.0 Consensus size: 6
51188180 TTACATTTCC
* *
51188190 GAAAAT GGAAAT GGAAAT GAAAAT GAAAAT GAAAAT GAAAAT GAAAAT
1 GAAAAT GAAAAT GAAAAT GAAAAT GAAAAT GAAAAT GAAAAT GAAAAT
51188238 GAAAAT
1 GAAAAT
51188244 TTGCAATCTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.63, C:0.00, G:0.20, T:0.17
Consensus pattern (6 bp):
GAAAAT
Found at i:51188383 original size:26 final size:26
Alignment explanation
Indices: 51188351--51188425 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 26
51188341 CATAATTTTC
**
51188351 TCAAAATTTTACTGGGGGTAAAATCA
1 TCAAAATTTTACTAAGGGTAAAATCA
* *
51188377 TCAAAATTTTACCAAGGGTAAAATTA
1 TCAAAATTTTACTAAGGGTAAAATCA
* *
51188403 TAAAAAATTTACTAA-GGTAAAAT
1 TCAAAATTTTACTAAGGGTAAAAT
51188426 TTGGATGATA
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
25 8 0.19
26 34 0.81
ACGTcount: A:0.47, C:0.09, G:0.13, T:0.31
Consensus pattern (26 bp):
TCAAAATTTTACTAAGGGTAAAATCA
Found at i:51193106 original size:35 final size:36
Alignment explanation
Indices: 51193016--51193106 Score: 112
Period size: 36 Copynumber: 2.6 Consensus size: 36
51193006 ACATTGTCAA
* * * *
51193016 TCCAAAACACACTAGAAGCTCACACGAGCCAATCCC
1 TCCAAAACACGCCAGATGCTTACACGAGCCAATCCC
* *
51193052 TCCAAAACACGCCATATGCTTACACGAGCCAATCCT
1 TCCAAAACACGCCAGATGCTTACACGAGCCAATCCC
*
51193088 TCC-AAACATGCCAGATGCT
1 TCCAAAACACGCCAGATGCT
51193107 CATAAGAGCT
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
35 14 0.30
36 33 0.70
ACGTcount: A:0.35, C:0.36, G:0.12, T:0.16
Consensus pattern (36 bp):
TCCAAAACACGCCAGATGCTTACACGAGCCAATCCC
Found at i:51196898 original size:16 final size:15
Alignment explanation
Indices: 51196875--51196920 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
51196865 AGATATATAT
51196875 TTTAATATTCATGCA
1 TTTAATATTCATGCA
*
51196890 TTTAGATA-T-ATG-T
1 TTTA-ATATTCATGCA
51196903 TTTAATATTCATGCA
1 TTTAATATTCATGCA
51196918 TTT
1 TTT
51196921 TGTCATTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 8
0.71 0.06 0.23
Matches are distributed among these distances:
12 3 0.12
13 5 0.20
14 6 0.24
15 8 0.32
16 3 0.12
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.52
Consensus pattern (15 bp):
TTTAATATTCATGCA
Found at i:51196933 original size:28 final size:28
Alignment explanation
Indices: 51196864--51196920 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
51196854 TTGTATGCAG
*
51196864 TAGATATATATTTTAATATTCATGCATT
1 TAGATATATGTTTTAATATTCATGCATT
51196892 TAGATATATGTTTTAATATTCATGCATT
1 TAGATATATGTTTTAATATTCATGCATT
51196920 T
1 T
51196921 TGTCATTCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.33, C:0.07, G:0.09, T:0.51
Consensus pattern (28 bp):
TAGATATATGTTTTAATATTCATGCATT
Found at i:51202795 original size:43 final size:43
Alignment explanation
Indices: 51202747--51202833 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
51202737 TTCAAGAGAT
51202747 AATTTAGTAGGGTTTTAATTTTTAGGAACAATAGACTTTAGGA
1 AATTTAGTAGGGTTTTAATTTTTAGGAACAATAGACTTTAGGA
51202790 AATTTAGTAGGGTTTTAATTTTTAGGAACAATAGACTTTAGGA
1 AATTTAGTAGGGTTTTAATTTTTAGGAACAATAGACTTTAGGA
51202833 A
1 A
51202834 CATGGATTTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.39
Consensus pattern (43 bp):
AATTTAGTAGGGTTTTAATTTTTAGGAACAATAGACTTTAGGA
Found at i:51203110 original size:21 final size:22
Alignment explanation
Indices: 51203072--51203112 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
51203062 AACAAAGAAA
*
51203072 ATTTTTTTATTTAATTTTCTAT
1 ATTTTTTTATTGAATTTTCTAT
*
51203094 ATTTTTTT-TTGATTTTTCT
1 ATTTTTTTATTGAATTTTCT
51203113 TTTATGTGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.17, C:0.05, G:0.02, T:0.76
Consensus pattern (22 bp):
ATTTTTTTATTGAATTTTCTAT
Found at i:51228737 original size:9 final size:9
Alignment explanation
Indices: 51228725--51228749 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
51228715 CTCCCAAACA
51228725 CACCAAGGG
1 CACCAAGGG
51228734 CACCAAGGG
1 CACCAAGGG
51228743 CACCAAG
1 CACCAAG
51228750 TCTCAATCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.36, C:0.36, G:0.28, T:0.00
Consensus pattern (9 bp):
CACCAAGGG
Found at i:51251930 original size:39 final size:39
Alignment explanation
Indices: 51251886--51252017 Score: 167
Period size: 39 Copynumber: 3.4 Consensus size: 39
51251876 TGATTGTGTA
* *
51251886 TATTGTGGTATATGCTTGAATGTTATGTGATTATATGAG
1 TATTGTGATATATGCTTAAATGTTATGTGATTATATGAG
* * *
51251925 TATTGTGATGTACGCTTAAAAT-TTATCTGATTATATGAG
1 TATTGTGATATATGCTT-AAATGTTATGTGATTATATGAG
* * *
51251964 TATTGTGATATATGCTTCAATGTTACGTGATTATATGTG
1 TATTGTGATATATGCTTAAATGTTATGTGATTATATGAG
*
51252003 TAATGTGATATATGC
1 TATTGTGATATATGC
51252018 GTACAAGTAA
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
38 3 0.04
39 73 0.92
40 3 0.04
ACGTcount: A:0.28, C:0.06, G:0.21, T:0.45
Consensus pattern (39 bp):
TATTGTGATATATGCTTAAATGTTATGTGATTATATGAG
Found at i:51254606 original size:42 final size:42
Alignment explanation
Indices: 51254559--51254741 Score: 204
Period size: 42 Copynumber: 4.4 Consensus size: 42
51254549 GCTTGTATGT
* * *
51254559 GGAGCTTCGTTGATACACAAATTGTCATTTAAACTCATGTGG
1 GGAGCTTCGCTGATACACAAATTGTCACTTAAGCTCATGTGG
* * * * *
51254601 GGAGCTTCACTAATACATAACTTGTCACTTCAGCTCATGTGG
1 GGAGCTTCGCTGATACACAAATTGTCACTTAAGCTCATGTGG
** * * *
51254643 GGAGCTTCGCTGATACACAGCTTATCACTTAAGCTCATTTAG
1 GGAGCTTCGCTGATACACAAATTGTCACTTAAGCTCATGTGG
* * * * *
51254685 GGAGCTTCGTTGATACATAGATTGTCATTTAAGCTCACGTGG
1 GGAGCTTCGCTGATACACAAATTGTCACTTAAGCTCATGTGG
51254727 GGAGCTTCGCTGATA
1 GGAGCTTCGCTGATA
51254742 AATAGCTTGT
Statistics
Matches: 116, Mismatches: 25, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 116 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (42 bp):
GGAGCTTCGCTGATACACAAATTGTCACTTAAGCTCATGTGG
Found at i:51261583 original size:15 final size:15
Alignment explanation
Indices: 51261560--51261598 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
51261550 AATGGATAAA
* *
51261560 TTATCTAATTAATTT
1 TTATTTAATTAATAT
51261575 TTATTTAATTAATAT
1 TTATTTAATTAATAT
51261590 TTATCTTAA
1 TTAT-TTAA
51261599 AAAAAAAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 17 0.81
16 4 0.19
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATTTAATTAATAT
Found at i:51262398 original size:23 final size:23
Alignment explanation
Indices: 51262338--51262383 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
51262328 AAAAAAATCG
*
51262338 TACATATT-TATTTTTATATTAT
1 TACATTTTATATTTTTATATTAT
51262360 TACATTTTATATTTTTATATTAT
1 TACATTTTATATTTTTATATTAT
51262383 T
1 T
51262384 TATTTTCAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.65
Consensus pattern (23 bp):
TACATTTTATATTTTTATATTAT
Found at i:51263010 original size:2 final size:2
Alignment explanation
Indices: 51263003--51263041 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
51262993 AGAAATTGGA
51263003 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51263042 CTTAGTTTTG
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:51271203 original size:27 final size:29
Alignment explanation
Indices: 51271172--51271241 Score: 96
Period size: 27 Copynumber: 2.6 Consensus size: 29
51271162 TTAAAAGTTG
51271172 GTAAAAAAATATTTTGGGCCCCTTAA-AA
1 GTAAAAAAATATTTTGGGCCCCTTAACAA
51271200 -TAAAAAAA-ATTTT-GGCCCCTTAACAA
1 GTAAAAAAATATTTTGGGCCCCTTAACAA
*
51271226 GT-GAAAAATATTTTGG
1 GTAAAAAAATATTTTGG
51271242 ACTCTTTTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
25 10 0.27
26 12 0.32
27 14 0.38
28 1 0.03
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.30
Consensus pattern (29 bp):
GTAAAAAAATATTTTGGGCCCCTTAACAA
Found at i:51271650 original size:68 final size:68
Alignment explanation
Indices: 51271541--51271679 Score: 269
Period size: 68 Copynumber: 2.0 Consensus size: 68
51271531 CAATTTAATA
51271541 TTTCATTTTTCTAATAAAAAATCATAAGAAATTATTAATATTGTAAAATATTAAAAATTTATATA
1 TTTCATTTTTCTAATAAAAAATCATAAGAAATTATTAATATTGTAAAATATTAAAAATTTATATA
51271606 AAC
66 AAC
*
51271609 TTTCATTTTTCTAATAAAAAATCATAAGAAATTATTAATATTGTAAAATATTAAAATTTTATATA
1 TTTCATTTTTCTAATAAAAAATCATAAGAAATTATTAATATTGTAAAATATTAAAAATTTATATA
51271674 AAC
66 AAC
51271677 TTT
1 TTT
51271680 GCTTTAAAAT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 70 1.00
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.43
Consensus pattern (68 bp):
TTTCATTTTTCTAATAAAAAATCATAAGAAATTATTAATATTGTAAAATATTAAAAATTTATATA
AAC
Found at i:51271815 original size:19 final size:20
Alignment explanation
Indices: 51271781--51271856 Score: 77
Period size: 20 Copynumber: 3.8 Consensus size: 20
51271771 TAAAATATTT
51271781 TAAAAATTTATAAAAACTTA
1 TAAAAATTTATAAAAACTTA
*
51271801 TAAATATTT-TAAAAACTTA
1 TAAAAATTTATAAAAACTTA
* *
51271820 TAAGAAATTCA-AGTAAA-TTA
1 TAA-AAATTTATA-AAAACTTA
51271840 TAAATAATTTATAAAAA
1 TAAA-AATTTATAAAAA
51271857 TAAAAAAAAG
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
19 14 0.31
20 27 0.60
21 4 0.09
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.36
Consensus pattern (20 bp):
TAAAAATTTATAAAAACTTA
Found at i:51271857 original size:20 final size:19
Alignment explanation
Indices: 51271709--51271857 Score: 74
Period size: 20 Copynumber: 7.5 Consensus size: 19
51271699 CTTAAAAAAA
*
51271709 TATAAAACTTATAAAAATT
1 TATAAAAATTATAAAAATT
*
51271728 T-TAATATATTATAAAAA-T
1 TATAA-AAATTATAAAAATT
* **
51271746 TA-AAAAATTAAAAAACCAAACA
1 TATAAAAATT--ATAA--AAATT
*
51271768 TATTAAAATATTTTAAAAATT
1 TA-TAAAA-ATTATAAAAATT
*
51271789 TATAAAAACTTATAAATATT
1 TATAAAAA-TTATAAAAATT
51271809 T-TAAAAACTTATAAGAAATT
1 TATAAAAA-TTATAA-AAATT
* *
51271829 CA-AGTAAATTATAAATAATT
1 TATA-AAAATTATAAA-AATT
51271849 TATAAAAAT
1 TATAAAAAT
51271858 AAAAAAAAGT
Statistics
Matches: 98, Mismatches: 16, Indels: 31
0.68 0.11 0.21
Matches are distributed among these distances:
17 4 0.04
18 7 0.07
19 29 0.30
20 35 0.36
21 12 0.12
22 2 0.02
23 2 0.02
24 4 0.04
25 3 0.03
ACGTcount: A:0.58, C:0.05, G:0.01, T:0.36
Consensus pattern (19 bp):
TATAAAAATTATAAAAATT
Found at i:51272437 original size:20 final size:20
Alignment explanation
Indices: 51272392--51272666 Score: 107
Period size: 20 Copynumber: 13.3 Consensus size: 20
51272382 AATTCAAAAA
* *
51272392 TTTTATAACTTTTTATAACT
1 TTTTATAATTTTTTATAAGT
**
51272412 CATTATAATTTTTTATAAGT
1 TTTTATAATTTTTTATAAGT
* *
51272432 TTTTATGATTTTTTTCTAAG-
1 TTTTAT-AATTTTTTATAAGT
*
51272452 TTTTATAATTTTTCAT-A-T
1 TTTTATAATTTTTTATAAGT
*
51272470 TTTTAATATTTTTATTAT-A-T
1 TTTT-ATAATTTT-TTATAAGT
** * *
51272490 TTTGTAGGATTTCTAATAAGT
1 TTT-TATAATTTTTTATAAGT
* * *
51272511 TTTTATAA-TGTTCATAATT
1 TTTTATAATTTTTTATAAGT
* *
51272530 TTTTATGATTTTTTATAAGC
1 TTTTATAATTTTTTATAAGT
*
51272550 TTTTATAAATTTTATT-TATGT
1 TTTTAT-AATTTT-TTATAAGT
* ****
51272571 TTTTCTTAAAAAATTATAAGT
1 TTTT-ATAATTTTTTATAAGT
*
51272592 TTATATAAAATTAATTTTTTAATAACT
1 TT-T-T---A-TAATTTTTT-ATAAGT
* *
51272619 TTTTAAATAATTTATCATAAGT
1 TTTT--ATAATTTTTTATAAGT
*
51272641 TTTTATGATTTTTTATAA-T
1 TTTTATAATTTTTTATAAGT
51272660 TTTTATA
1 TTTTATA
51272667 GCATTTGTGC
Statistics
Matches: 185, Mismatches: 52, Indels: 37
0.68 0.19 0.14
Matches are distributed among these distances:
18 5 0.03
19 38 0.21
20 68 0.37
21 36 0.19
22 13 0.07
23 8 0.04
24 3 0.02
25 1 0.01
26 6 0.03
27 7 0.04
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.59
Consensus pattern (20 bp):
TTTTATAATTTTTTATAAGT
Found at i:51272444 original size:10 final size:10
Alignment explanation
Indices: 51272392--51272562 Score: 89
Period size: 10 Copynumber: 17.2 Consensus size: 10
51272382 AATTCAAAAA
*
51272392 TTTTATAACT
1 TTTTATAATT
*
51272402 TTTTATAACT
1 TTTTATAATT
**
51272412 CATTATAATT
1 TTTTATAATT
*
51272422 TTTTATAAGT
1 TTTTATAATT
*
51272432 TTTTATGATTT
1 TTTTAT-AATT
* *
51272443 TTTTCTAA-G
1 TTTTATAATT
51272452 TTTTATAATT
1 TTTTATAATT
*
51272462 TTTCAT-ATT
1 TTTTATAATT
* *
51272471 TTTAATATTT
1 TTTTATAATT
51272481 TTATTAT-ATT
1 TT-TTATAATT
* **
51272491 TTGTAGGATT
1 TTTTATAATT
* * *
51272501 TCTAATAAGT
1 TTTTATAATT
51272511 TTTTATAA-T
1 TTTTATAATT
* *
51272520 GTTCATAATT
1 TTTTATAATT
*
51272530 TTTTATGATT
1 TTTTATAATT
**
51272540 TTTTATAAGC
1 TTTTATAATT
51272550 TTTTATAAATT
1 TTTTAT-AATT
51272561 TT
1 TT
51272563 ATTTATGTTT
Statistics
Matches: 116, Mismatches: 38, Indels: 13
0.69 0.23 0.08
Matches are distributed among these distances:
9 24 0.21
10 78 0.67
11 14 0.12
ACGTcount: A:0.29, C:0.05, G:0.06, T:0.61
Consensus pattern (10 bp):
TTTTATAATT
Found at i:51272653 original size:10 final size:10
Alignment explanation
Indices: 51272603--51272663 Score: 50
Period size: 10 Copynumber: 5.8 Consensus size: 10
51272593 TATATAAAAT
51272603 TAATTTTTTAA
1 TAATTTTTT-A
*
51272614 TAACTTTTTAAA
1 TAA-TTTTT-TA
* *
51272626 TAATTTATCA
1 TAATTTTTTA
*
51272636 TAAGTTTTTA
1 TAATTTTTTA
*
51272646 TGATTTTTTA
1 TAATTTTTTA
51272656 TAATTTTT
1 TAATTTTT
51272664 ATAGCATTTG
Statistics
Matches: 39, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
10 23 0.59
11 7 0.18
12 9 0.23
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (10 bp):
TAATTTTTTA
Found at i:51273090 original size:9 final size:9
Alignment explanation
Indices: 51273078--51273165 Score: 83
Period size: 9 Copynumber: 9.7 Consensus size: 9
51273068 TACTTTTGTG
51273078 ATTTTTATA
1 ATTTTTATA
51273087 ATTTTTATA
1 ATTTTTATA
**
51273096 AGTTCATATA
1 A-TTTTTATA
51273106 ATTTTTATA
1 ATTTTTATA
51273115 ATATTTTATA
1 AT-TTTTATA
*
51273125 AATTTTATAA
1 ATTTTTAT-A
51273135 ATTTTT-T-
1 ATTTTTATA
*
51273142 ATATTTAT-
1 ATTTTTATA
51273150 ATTTTTATA
1 ATTTTTATA
51273159 ATATTTT
1 AT-TTTT
51273166 CAATGATATT
Statistics
Matches: 65, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
7 5 0.08
8 8 0.12
9 27 0.42
10 25 0.38
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (9 bp):
ATTTTTATA
Found at i:51273124 original size:19 final size:19
Alignment explanation
Indices: 51273078--51273165 Score: 82
Period size: 19 Copynumber: 4.8 Consensus size: 19
51273068 TACTTTTGTG
51273078 ATTTTTATAAT-TTTTATA
1 ATTTTTATAATATTTTATA
**
51273096 AGTTCATATAAT-TTTTATA
1 A-TTTTTATAATATTTTATA
51273115 ATATTTTATAA-ATTTTATAA
1 AT-TTTTATAATATTTTAT-A
51273135 ATTTTT-T-ATA-TTTAT-
1 ATTTTTATAATATTTTATA
51273150 ATTTTTATAATATTTT
1 ATTTTTATAATATTTT
51273166 CAATGATATT
Statistics
Matches: 58, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
15 6 0.10
16 1 0.02
17 9 0.16
18 7 0.12
19 32 0.55
20 3 0.05
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (19 bp):
ATTTTTATAATATTTTATA
Found at i:51273162 original size:11 final size:11
Alignment explanation
Indices: 51273106--51273165 Score: 56
Period size: 11 Copynumber: 5.5 Consensus size: 11
51273096 AGTTCATATA
51273106 ATTTTTATAAT
1 ATTTTTATAAT
51273117 A-TTTTATAA-
1 ATTTTTATAAT
51273126 A-TTTTATAA-
1 ATTTTTATAAT
51273135 ATTTTTTATATTTAT
1 A-TTTTTATA---AT
51273150 ATTTTTATAAT
1 ATTTTTATAAT
51273161 ATTTT
1 ATTTT
51273166 CAATGATATT
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
9 10 0.23
10 8 0.19
11 15 0.35
14 9 0.21
15 1 0.02
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
ATTTTTATAAT
Found at i:51275659 original size:41 final size:40
Alignment explanation
Indices: 51275614--51275712 Score: 144
Period size: 41 Copynumber: 2.4 Consensus size: 40
51275604 AATACCATCG
* * *
51275614 CATAGCCGAAGCTATTATAATCTCGCATACTAAGTGCCTTA
1 CATAGCCGAAGCTATT-CAATCTCGCACACTAAGTGCCATA
51275655 CATAGCCGAAGCTATCTCAATCTCGCACACTAAGTGCCATA
1 CATAGCCGAAGCTAT-TCAATCTCGCACACTAAGTGCCATA
*
51275696 TATAGCCGAAGCTATTC
1 CATAGCCGAAGCTATTC
51275713 CCAATCGCAC
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
40 2 0.04
41 50 0.94
42 1 0.02
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.26
Consensus pattern (40 bp):
CATAGCCGAAGCTATTCAATCTCGCACACTAAGTGCCATA
Found at i:51279436 original size:18 final size:18
Alignment explanation
Indices: 51279415--51279456 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
51279405 CAAGTTCAGC
51279415 TTCTGGCTCATCTTCACA
1 TTCTGGCTCATCTTCACA
* *
51279433 TTCTAGTTCATCTTCACA
1 TTCTGGCTCATCTTCACA
51279451 TTCTGG
1 TTCTGG
51279457 ATCTTTTAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.17, C:0.29, G:0.12, T:0.43
Consensus pattern (18 bp):
TTCTGGCTCATCTTCACA
Found at i:51279656 original size:165 final size:165
Alignment explanation
Indices: 51279485--51279860 Score: 565
Period size: 165 Copynumber: 2.3 Consensus size: 165
51279475 TTCATTTAAA
* * *
51279485 GGTTCTAGCTC-TCCCGTAGATTCTAATAATTCTAAAGATTCCGGTTTAGGTCATGGGGATTCTA
1 GGTTCTAGCTCAT-CCGAAGATTCTAACAATTCTAAAGATTCCAGTTTAGGTCATGGGGATTCTA
* * *
51279549 GTTCCTCTACAACTTCTAGTTCTTTATCAGGTTCTAGCCATTCTAAAGCTTCTAACTCATTGTCA
65 GATCCTCTACAACTTCTAGTTCTTTATCAGGTTCTAGCCATTCCAAAGCTTCCAACTCATTGTCA
*
51279614 CATTCTAGTTCATCTTCACATTCTGGTTCTTGGAAG
130 CATTCTAGTTCATCTTCACATTATGGTTCTTGGAAG
* * *
51279650 GGTTCTAGCTCATTCGAAGATTCTAACAATTCTAAGGATTCTAGTTTAGGTCATGGGGATTCTAG
1 GGTTCTAGCTCATCCGAAGATTCTAACAATTCTAAAGATTCCAGTTTAGGTCATGGGGATTCTAG
** * *
51279715 ATCCTCTGGAACTTCTAGTTCTTTATCAGGTTCTAGCCATTCCAAATCTTCCAGCTCATTGTCAC
66 ATCCTCTACAACTTCTAGTTCTTTATCAGGTTCTAGCCATTCCAAAGCTTCCAACTCATTGTCAC
51279780 ATTCTAGTTCATCTTCACATTATGGTTCTTGGAAG
131 ATTCTAGTTCATCTTCACATTATGGTTCTTGGAAG
* * * * *
51279815 GGTTCTAGCTCATTCGGAGATTCTAACAAGTCTAAGGATTCTAGTT
1 GGTTCTAGCTCATCCGAAGATTCTAACAATTCTAAAGATTCCAGTT
51279861 CTGCTATGGC
Statistics
Matches: 194, Mismatches: 16, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
165 193 0.99
166 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (165 bp):
GGTTCTAGCTCATCCGAAGATTCTAACAATTCTAAAGATTCCAGTTTAGGTCATGGGGATTCTAG
ATCCTCTACAACTTCTAGTTCTTTATCAGGTTCTAGCCATTCCAAAGCTTCCAACTCATTGTCAC
ATTCTAGTTCATCTTCACATTATGGTTCTTGGAAG
Found at i:51280243 original size:18 final size:18
Alignment explanation
Indices: 51280222--51280284 Score: 74
Period size: 18 Copynumber: 3.5 Consensus size: 18
51280212 CAGTTTCAGC
*
51280222 TTCAGGCTCATCTTCACA
1 TTCAGGTTCATCTTCACA
*
51280240 TTCAGGTTCATATTCACA
1 TTCAGGTTCATCTTCACA
*
51280258 TTCTA-GTTCTTCTTCACA
1 TTC-AGGTTCATCTTCACA
*
51280276 TTCAAGTTC
1 TTCAGGTTC
51280285 TTTTAAGCAT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
17 1 0.03
18 37 0.95
19 1 0.03
ACGTcount: A:0.22, C:0.27, G:0.10, T:0.41
Consensus pattern (18 bp):
TTCAGGTTCATCTTCACA
Found at i:51280295 original size:18 final size:18
Alignment explanation
Indices: 51280232--51280303 Score: 56
Period size: 18 Copynumber: 4.0 Consensus size: 18
51280222 TTCAGGCTCA
* * *
51280232 TCTTCACATTCAGGTTCA
1 TCTTAACATTCAAGTTCT
* * *
51280250 TATTCACATTCTAGTTCT
1 TCTTAACATTCAAGTTCT
*
51280268 TCTTCACATTCAAGTTCT
1 TCTTAACATTCAAGTTCT
*
51280286 T-TTAAGCATTCAAATTCT
1 TCTTAA-CATTCAAGTTCT
51280304 GGTTCTTCTA
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
17 3 0.07
18 42 0.93
ACGTcount: A:0.25, C:0.24, G:0.07, T:0.44
Consensus pattern (18 bp):
TCTTAACATTCAAGTTCT
Found at i:51280855 original size:192 final size:193
Alignment explanation
Indices: 51280502--51281498 Score: 957
Period size: 192 Copynumber: 5.0 Consensus size: 193
51280492 AACTTCTGGA
* * * * *
51280502 TCATCCTCAAAATCTAGTTTATCTTCA-CATTCCGGTTCTAGTGCTACTAACTCATCCACAAACT
1 TCATCCTCAAATTCCAGTTCATCTTCAGCATTCTGGTTCTAGTGCTGCTAACTCATCCACAAACT
* ** *
51280566 CGGGTTCCAACAATTCTAAGGATTCTGATTCTACTACAACTTCTCAGTCTTCATTAAATCATAAG
66 CAGGTTCCAACAATTCTAAGGATTCTGATTCTACTACGGCTTCTCAGTCTTCATTAAATCATGAG
* * *
51280631 GCTTCTAATTCCTCTGCAAGTTCTAGTTCTTTATCAGGTTCTAGCAATTATAAGGTTTCAGGC
131 GCTTCTAATTCCTCTACAAGTTCTGGTTCTTTATCAGGTTCTAGCAATTATAAGGCTTCAGGC
* * *
51280694 TTATCCGCAAATTCCAGTTCATCTTCA-CATTCTGGTTCTAGTGCTGCTAACTCATCCATAAACT
1 TCATCCTCAAATTCCAGTTCATCTTCAGCATTCTGGTTCTAGTGCTGCTAACTCATCCACAAACT
* * * *
51280758 CAGGTTCTAACCATTCTAAGGATTCTGATTCTACAACGGCTTCTCAGTCTTCATTAAATCATGGG
66 CAGGTTCCAACAATTCTAAGGATTCTGATTCTACTACGGCTTCTCAGTCTTCATTAAATCATGAG
* * * ** * * **
51280823 GCTTCTAGTTCCTCCACAAGTTCTGATTCTTTATCAGGTTCTAATAGTTCTAAGGCTTTTGGC
131 GCTTCTAATTCCTCTACAAGTTCTGGTTCTTTATCAGGTTCTAGCAATTATAAGGCTTCAGGC
* * * * * * * *
51280886 TCATCTTCAGACTCCAGTTC-TTTTAAGCATTCTGGTTCTGGTGCTTCTAACTCTTCCACAAACA
1 TCATCCTCAAATTCCAGTTCATCTTCAGCATTCTGGTTCTAGTGCTGCTAACTCATCCACAAAC-
* * * * * *
51280950 T-AGGTTCCAACAATTCTAATGATTCTGTTTCTACTGCGGCTTCTCAGTCTACATTAAATCGTGG
65 TCAGGTTCCAACAATTCTAAGGATTCTGATTCTACTACGGCTTCTCAGTCTTCATTAAATCATGA
* *
51281014 GGCTTCTAATTCCTCTTCAAGTTCTGGTTCTTTATCAGGTTCTAGCAATTATAAGGCTT-ATGGG
130 GGCTTCTAATTCCTCTACAAGTTCTGGTTCTTTATCAGGTTCTAGCAATTATAAGGCTTCA-GGC
* *
51281078 TCATCCTCAAATTCTATTTCATCTTC-GCATTCTGGTTCTTTTAATCATTTTGGTTCTATTGCTG
1 TCATCCTCAAATTCCAGTTCATCTTCAGCATTCTGGTTC------T-A-----G------TGCTG
* * * *
51281142 GTAACTCCTCCACAAACTCAGGTTCCAACAGTTCTAAGGGTTCTGATTCTACTACGGCTTCTCAG
48 CTAACTCATCCACAAACTCAGGTTCCAACAATTCTAAGGATTCTGATTCTACTACGGCTTCTCAG
* * * *
51281207 TCTTCATTAAACCATAAGGCTTCTAATTCCTCTGCAAGTTCTGGTTCTTTATCAGGTTCTAGAAA
113 TCTTCATTAAATCATGAGGCTTCTAATTCCTCTACAAGTTCTGGTTCTTTATCAGGTTCTAGCAA
*
51281272 TTATAAGGCTTCAAGC
178 TTATAAGGCTTCAGGC
*
51281288 TCATCCTCAAATTCTAGTTTATCTTCGCATTCTGGTTCTTTTAAGCATTCTGGTTCTAGTGCTGC
1 TCATCCTCAAATTCCAG------TT--CA-TC---TTC-----AGCATTCTGGTTCTAGTGCTGC
* * ** * * *
51281353 TAACTCATCCACAAATTCTGGTTTGAACAATTCTAAGGATTCT-AGTCCTACAACGGCTTCTAAG
49 TAACTCATCCACAAACTCAGGTTCCAACAATTCTAAGGATTCTGA-TTCTACTACGGCTTCTCAG
** * * *
51281417 TCTTCATTAGAA-CATGAGGCTTCTGGTTCCTCTACAAGTTCTGGTTCTCTGTCAGGTTCTAGTA
113 TCTTCATTA-AATCATGAGGCTTCTAATTCCTCTACAAGTTCTGGTTCTTTATCAGGTTCTAGCA
* *
51281481 ATTCTAAGGCTTCTGGC
177 ATTATAAGGCTTCAGGC
51281498 T
1 T
51281499 TTTCATCACA
Statistics
Matches: 657, Mismatches: 104, Indels: 70
0.79 0.13 0.08
Matches are distributed among these distances:
191 4 0.01
192 346 0.53
193 4 0.01
198 1 0.00
204 1 0.00
209 2 0.00
210 272 0.41
211 3 0.00
216 3 0.00
218 2 0.00
219 2 0.00
221 1 0.00
222 4 0.01
228 12 0.02
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (193 bp):
TCATCCTCAAATTCCAGTTCATCTTCAGCATTCTGGTTCTAGTGCTGCTAACTCATCCACAAACT
CAGGTTCCAACAATTCTAAGGATTCTGATTCTACTACGGCTTCTCAGTCTTCATTAAATCATGAG
GCTTCTAATTCCTCTACAAGTTCTGGTTCTTTATCAGGTTCTAGCAATTATAAGGCTTCAGGC
Found at i:51281248 original size:210 final size:209
Alignment explanation
Indices: 51280902--51281493 Score: 778
Period size: 210 Copynumber: 2.8 Consensus size: 209
51280892 TCAGACTCCA
* * *
51280902 GTTCTTTTAAGCATTCTGGTTCTGGTGCTTCTAACTCTTCCACAAACAT-AGGTTCCAACAATTC
1 GTTCTTTTAAGCATTCTGGTTCTAGTGCTGCTAACTCATCCACAAAC-TCAGGTTCCAACAATTC
* * * * * * *
51280966 TAATGATTCTGTTTCTACTGCGGCTTCTCAGTCTACATTAAATCGTGGGGCTTCTAATTCCTCTT
65 TAAGGATTCTGATTCTACTACGGCTTCTCAGTCTTCATTAAA-CATGAGGCTTCTAATTCCTCTA
* * *
51281031 CAAGTTCTGGTTCTTTATCAGGTTCTAGCAATTATAAGGCTT-ATGGGTCATCCTCAAATTCTA-
129 CAAGTTCTGGTTCTTTATCAGGTTCTAGAAATTATAAGGCTTCA-AGCTCATCCTCAAATTCTAG
51281094 TTTCATCTTCGCATTCTG
193 TTT-ATCTTCGCATTCTG
* * * * * *
51281112 GTTCTTTTAATCATTTTGGTTCTATTGCTGGTAACTCCTCCACAAACTCAGGTTCCAACAGTTCT
1 GTTCTTTTAAGCATTCTGGTTCTAGTGCTGCTAACTCATCCACAAACTCAGGTTCCAACAATTCT
* * *
51281177 AAGGGTTCTGATTCTACTACGGCTTCTCAGTCTTCATTAAACCATAAGGCTTCTAATTCCTCTGC
66 AAGGATTCTGATTCTACTACGGCTTCTCAGTCTTCATTAAA-CATGAGGCTTCTAATTCCTCTAC
51281242 AAGTTCTGGTTCTTTATCAGGTTCTAGAAATTATAAGGCTTCAAGCTCATCCTCAAATTCTAGTT
130 AAGTTCTGGTTCTTTATCAGGTTCTAGAAATTATAAGGCTTCAAGCTCATCCTCAAATTCTAGTT
51281307 TATCTTCGCATTCTG
195 TATCTTCGCATTCTG
* * **
51281322 GTTCTTTTAAGCATTCTGGTTCTAGTGCTGCTAACTCATCCACAAATTCTGGTTTGAACAATTCT
1 GTTCTTTTAAGCATTCTGGTTCTAGTGCTGCTAACTCATCCACAAACTCAGGTTCCAACAATTCT
* * * **
51281387 AAGGATTCT-AGTCCTACAACGGCTTCTAAGTCTTCATTAGAACATGAGGCTTCTGGTTCCTCTA
66 AAGGATTCTGA-TTCTACTACGGCTTCTCAGTCTTCATTA-AACATGAGGCTTCTAATTCCTCTA
* * * *
51281451 CAAGTTCTGGTTCTCTGTCAGGTTCTAGTAATTCTAAGGCTTC
129 CAAGTTCTGGTTCTTTATCAGGTTCTAGAAATTATAAGGCTTC
51281494 TGGCTTTTCA
Statistics
Matches: 334, Mismatches: 43, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
209 2 0.01
210 326 0.98
211 6 0.02
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.39
Consensus pattern (209 bp):
GTTCTTTTAAGCATTCTGGTTCTAGTGCTGCTAACTCATCCACAAACTCAGGTTCCAACAATTCT
AAGGATTCTGATTCTACTACGGCTTCTCAGTCTTCATTAAACATGAGGCTTCTAATTCCTCTACA
AGTTCTGGTTCTTTATCAGGTTCTAGAAATTATAAGGCTTCAAGCTCATCCTCAAATTCTAGTTT
ATCTTCGCATTCTG
Found at i:51281605 original size:18 final size:18
Alignment explanation
Indices: 51281561--51281610 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
51281551 CTTCTCTTTG
* *
51281561 TCACATTCAAGTTCAGCT
1 TCACATTCTAGTTCAGAT
*
51281579 TCACATTCTAGTTCATAT
1 TCACATTCTAGTTCAGAT
*
51281597 TCACATTCTGGTTC
1 TCACATTCTAGTTC
51281611 CTTTGAGCAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.24, C:0.26, G:0.10, T:0.40
Consensus pattern (18 bp):
TCACATTCTAGTTCAGAT
Found at i:51282398 original size:18 final size:18
Alignment explanation
Indices: 51282375--51282410 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
51282365 AAAGGATTCG
51282375 GTTCTGACAATTCTCAAA
1 GTTCTGACAATTCTCAAA
**
51282393 GTTCTGACTCTTCTCAAA
1 GTTCTGACAATTCTCAAA
51282411 CTTCACAAGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.36
Consensus pattern (18 bp):
GTTCTGACAATTCTCAAA
Found at i:51285587 original size:900 final size:899
Alignment explanation
Indices: 51283085--51287569 Score: 7743
Period size: 900 Copynumber: 5.0 Consensus size: 899
51283075 ATGGATATTC
* * * *
51283085 TAAAGCATCAAGCTCCTCATCAGGTTCAACTATTTTTGGTTATTTTATGATGTTGGGTTTTTTAT
1 TAAAGCTTCAGGCTCCTCATCAGGTTCAACTATTTTTTGTTATTTTATGATTTTGGG-TTTTTAT
* *
51283150 AAGGTTATAATGATTTTAAAGTTTTTAACATTTATATGAATTTTGACTTTTTAATAGGTTCTGAA
65 AAGGTTATAATGA-TTTAAAGTTTTTAGCATTTATATGAATTTTGACTTTTTATTAGGTTCTGAA
*
51283215 GGATATAAGTCTTCTACGAGTGACTCTTCAGGTTTGGATTCCCTATCATTTTCTATTATTTCATC
129 GGATATAAGTCTTCTACGAGTGATTCTTCAGGTTTGGATTCCCTATCATTTTCTATTATTTCATC
51283280 CATTTGACATGCTTATACATACTTTATAATCAAGTTCTGGAAAATTTTTGGGTCTTGACATAGCT
194 CATTTGACATGCTTATACATACTTTATAATCAAGTTCTGGAAAATTTTTGGGTCTTGACATAGCT
51283345 ATCTATTCTTTATCAGTGTCTGGTAATTCTAAGGCTTCAAGTACTAAAAATGAAAGTGCTTCCAT
259 ATCTATTCTTTATCAGTGTCTGGTAATTCTAAGGCTTCAAGTACTAAAAATGAAAGTGCTTCCAT
*
51283410 GGGTACCGATGCTTCAGCGACTAATGGTTCTACGACTTTTATTCCTACGAGCCCTTCCACAGGTG
324 GGGTACCAATGCTTCAGCGACTAATGGTTCTACGACTTTTATTCCTACGAGCCCTTCCACAGGTG
*
51283475 CTGGACCTACTAAAACTTCAAGATCGTCATCTAGTTCAACTATTTATGGTTATTTTATGATGTTG
389 CTGGACCTGCTAAAACTTCAAGATCGTCATCTAGTTCAACTATTTATGGTTATTTTATGATGTTG
* *
51283540 AGATCTTAATAATGTTATAATGATTCTAAAGTTTTTAACCATTATATGAATGTTGACTTTTTATT
454 AGTTCTTAATAATGTTATAATGATTCTAAGGTTTTTAACCATTATATGAATGTTGACTTTTTATT
*
51283605 AGGTTCTGACGGATCAAAGTCTTCTACAAGTAACCCTTCAGGTTCAAATTTTCTATCTTTTTTGT
519 AGGTTCTGACGGATCTAAGTCTTCTACAAGTAACCCTTCAGGTTCAAATTTTCTATCTTTTTTGT
51283670 ATTATTTTATCTATTTAACATGCTTTTACATATTTTATAATAATTTTGTGGGTTTTGACTTGTCT
584 ATTATTTTATCTATTTAACATGCTTTTACATATTTTATAATAATTTTGTGGGTTTTGACTTGTCT
*
51283735 ACTTGTTGTTTTTCACATTCTTGTAATTCTAAAGCAACTAGTACTAAAAATACGGGTGCTTCCAC
649 ACTTGTTGTTTTTCACATTCTTGTAATTCTAAAGCAACTAGTACTAAAAATACGGATGCTTCCAC
*
51283800 AGGCACTACTACTTCAGTGACAAATGGTCCTACAGCTTCTACTCCTTCTTCGAGCCCTTCCACAG
714 AGGCACTAGTACTTCAGTGACAAATGGTCCTACAGCTTCTACTCCTTCTTCGAGCCCTTCCACAG
51283865 GCGTTAGTTCTTTCACAACTAATAGCCATAAGGGATCTGGTCATACAAGTTCAAGCAATTTTGCT
779 GCGTTAGTTCTTTCACAACTAATAGCCATAAGGGATCTGGTCATACAAGTTCAAGCAATTTTGCT
*
51283930 CACTCTAGTTCGTTTACAGCTTCTGGTCACTCTTCCGCAAGTCATAGTTATGGTTT
844 CACTCTGGTTCGTTTACAGCTTCTGGTCACTCTTCCGCAAGTCATAGTTATGGTTT
*
51283986 TAAAGCTTCAGGCTCCTCATCAGGTTCAGCTATTTTTTGTTATTTTATGATTTTGGGTTTTTATA
1 TAAAGCTTCAGGCTCCTCATCAGGTTCAACTATTTTTTGTTATTTTATGATTTTGGGTTTTTATA
* *
51284051 AGTTTTTAATGATGTTAAAGTTTTTAGCATTTATATGAATTTTGACTTTTTATTAGGTTCTGAAG
66 AGGTTATAATGAT-TTAAAGTTTTTAGCATTTATATGAATTTTGACTTTTTATTAGGTTCTGAAG
*
51284116 GATATAAGTCTTCTACGAGTGATTCTCCAGGTTTGGATTCCCTATCATTTTCTATTATTTCATCC
130 GATATAAGTCTTCTACGAGTGATTCTTCAGGTTTGGATTCCCTATCATTTTCTATTATTTCATCC
*
51284181 ATTTGACATGCTTATACATACTTTATAATCAAGTTCTGG-AAATTTTTGGGTCTTGACATAGATA
195 ATTTGACATGCTTATACATACTTTATAATCAAGTTCTGGAAAATTTTTGGGTCTTGACATAGCTA
51284245 TCTATTCTTTATCAGTGTCTGGTAATTCTAAGGCTTCAAGTACTAAAAATGAAAGTGCTTCCATG
260 TCTATTCTTTATCAGTGTCTGGTAATTCTAAGGCTTCAAGTACTAAAAATGAAAGTGCTTCCATG
*
51284310 GGTACCAATGCTTCAGCGACTAATGGTTCTACGACTTTTATTCCTACGAGCCCTTCCACAGGTGT
325 GGTACCAATGCTTCAGCGACTAATGGTTCTACGACTTTTATTCCTACGAGCCCTTCCACAGGTGC
*
51284375 TGGACCTGCTAAAACTTCAAGATCGTCAACTAGTTCAACTATTTATGGTTATTTTATGATGTTGA
390 TGGACCTGCTAAAACTTCAAGATCGTCATCTAGTTCAACTATTTATGGTTATTTTATGATGTTGA
* *
51284440 GTACTGAATAATGTTATAATGATTCTAAGGTTTTTAACCATTATATGAATGTTGACTTTTTATTA
455 GTTCTTAATAATGTTATAATGATTCTAAGGTTTTTAACCATTATATGAATGTTGACTTTTTATTA
*
51284505 GGTTCTGACGGATCAAAGTCTTCTACAAGTAACCCTTCAGGTTCAAATTTTCTATCTTTTTTGTA
520 GGTTCTGACGGATCTAAGTCTTCTACAAGTAACCCTTCAGGTTCAAATTTTCTATCTTTTTTGTA
51284570 TTATTTTATCTATTTAACATGCTTTTACATATTTTATAATAATTTTGTGGGTTTTGACTTGTCTA
585 TTATTTTATCTATTTAACATGCTTTTACATATTTTATAATAATTTTGTGGGTTTTGACTTGTCTA
*
51284635 CTTGTTGTGTTTCACATTCTTGTAATTCTAAAGCAACTAGTACTAAAAATACGGATGCTTCCACA
650 CTTGTTGTTTTTCACATTCTTGTAATTCTAAAGCAACTAGTACTAAAAATACGGATGCTTCCACA
* *
51284700 GGCACTACTACTTCAGTGACAAATGGTCCTACAGCTTCTACTCCTTCTTCGAGCCCTTCCACCGG
715 GGCACTAGTACTTCAGTGACAAATGGTCCTACAGCTTCTACTCCTTCTTCGAGCCCTTCCACAGG
51284765 CGTTAGTTCTTTCACAACTAATAGCCATAAGGGATCTGGTCATACAAGTTCAAGCAATTTTGCTC
780 CGTTAGTTCTTTCACAACTAATAGCCATAAGGGATCTGGTCATACAAGTTCAAGCAATTTTGCTC
51284830 ACTCTGGTTCGTTTACAGCTTCTGGTCACTCTTCCGCAAGTCATAGTTATGGTTT
845 ACTCTGGTTCGTTTACAGCTTCTGGTCACTCTTCCGCAAGTCATAGTTATGGTTT
*
51284885 TAAAGCTTCAGGCTCCTCATCAGGTTCAGCTATTTTTTGTTATTTTATGATTTTGGGTTTTTATA
1 TAAAGCTTCAGGCTCCTCATCAGGTTCAACTATTTTTTGTTATTTTATGATTTTGGGTTTTTATA
*
51284950 AGGTTTTAATGATGTTAAAGTTTTTAGCATTTATATGAATTTTGACTTTTTATTAGGTTCTGAAG
66 AGGTTATAATGAT-TTAAAGTTTTTAGCATTTATATGAATTTTGACTTTTTATTAGGTTCTGAAG
51285015 GATATAAGTCTTCTACGAGTGATTCTTCAGGTTTGGATTCCCTATCATTTTCTATTATTTCATCC
130 GATATAAGTCTTCTACGAGTGATTCTTCAGGTTTGGATTCCCTATCATTTTCTATTATTTCATCC
* *
51285080 ATTTGACATGCTGATACATAATTTATAATCAAGTTCTGGAAAATTTTTGGGTCTTGACATAGCTA
195 ATTTGACATGCTTATACATACTTTATAATCAAGTTCTGGAAAATTTTTGGGTCTTGACATAGCTA
*
51285145 TCTATTATTTATCAGTGTCTGGTAATTCTAAGGCTTCAAGTACTAAAAATGAAAGTGCTTCCATG
260 TCTATTCTTTATCAGTGTCTGGTAATTCTAAGGCTTCAAGTACTAAAAATGAAAGTGCTTCCATG
*
51285210 GGTACCGATGCTTCAGCGACTAATGGTTCTACGACTTTTATTCCTACGAGCCCTTCCACAGGTGC
325 GGTACCAATGCTTCAGCGACTAATGGTTCTACGACTTTTATTCCTACGAGCCCTTCCACAGGTGC
*
51285275 TGGACCTGCTAAAACTTCAAGATCGTCAACTAGTTCAACTATTTATGGTTATTTTATGATGTTGA
390 TGGACCTGCTAAAACTTCAAGATCGTCATCTAGTTCAACTATTTATGGTTATTTTATGATGTTGA
*
51285340 GTTCTTAATAATTTTATAATGATTCTAAGGTTTTTAACCATTATATGAATGTTGACTTTTTATTA
455 GTTCTTAATAATGTTATAATGATTCTAAGGTTTTTAACCATTATATGAATGTTGACTTTTTATTA
*
51285405 GGTTCTGACGGATCTAAGTCTTCTACAAGTAACCCATCAGGTTCAAATTTTCTATCTTTTTTGTA
520 GGTTCTGACGGATCTAAGTCTTCTACAAGTAACCCTTCAGGTTCAAATTTTCTATCTTTTTTGTA
**
51285470 TTATTTTATCTATTTAACATGCTCGTACATATTTTATAATAATTTTGTGGGTTTTGACTTGTCTA
585 TTATTTTATCTATTTAACATGCTTTTACATATTTTATAATAATTTTGTGGGTTTTGACTTGTCTA
** *
51285535 CTTCCTGTTTTTCACATTCTTGTAATTCTAAAGCAACTAGTACTAAAAATACGGCTGCTTCCACA
650 CTTGTTGTTTTTCACATTCTTGTAATTCTAAAGCAACTAGTACTAAAAATACGGATGCTTCCACA
51285600 GGCACTAGTACTTCAGTGACAAATGGTCCTACAGCTTCTACTCCTTCTTCGAGCCCTTCCACAGG
715 GGCACTAGTACTTCAGTGACAAATGGTCCTACAGCTTCTACTCCTTCTTCGAGCCCTTCCACAGG
* *
51285665 TGTTAGTTCTTTCACAACTAATAACCATAAGGGATCTGGTCATACAAGTTCAAGCAATTTTGCTC
780 CGTTAGTTCTTTCACAACTAATAGCCATAAGGGATCTGGTCATACAAGTTCAAGCAATTTTGCTC
51285730 ACTCTGGTTCGTTTACAGCTTCTGGTCACTCTTCCGCAAGTCATAGTTATGGTTT
845 ACTCTGGTTCGTTTACAGCTTCTGGTCACTCTTCCGCAAGTCATAGTTATGGTTT
* *
51285785 TAAAGCTTCAGGCTCTTCATCAGGTTCAACAATTTTTTGTTATTTTATGATTTTGGGTTTTTATA
1 TAAAGCTTCAGGCTCCTCATCAGGTTCAACTATTTTTTGTTATTTTATGATTTTGGGTTTTTATA
* *
51285850 AGGTTATAATGATTTTAA------AG--TTT-T-T--A-----AC-ATTTATTAGGTTCTGAAGG
66 AGGTTATAATGATTTAAAGTTTTTAGCATTTATATGAATTTTGACTTTTTATTAGGTTCTGAAGG
51285897 ATATAAGTCTTCTACGAGTGATTCTTCAGGTTTGGATTCCCTATCATTTTCTATTATTTCATCCA
131 ATATAAGTCTTCTACGAGTGATTCTTCAGGTTTGGATTCCCTATCATTTTCTATTATTTCATCCA
*
51285962 TTTGACATGCTGATACATACTTTATAATCAAGTTCTGGAAAATTTTTGGGTCTTGACATAGCTAT
196 TTTGACATGCTTATACATACTTTATAATCAAGTTCTGGAAAATTTTTGGGTCTTGACATAGCTAT
*
51286027 CTATTCTTTACCAGTGTCTGGTAATTCTAAGGCTTCAAGTACTAAAAATGAAAGTGCTTCCATGG
261 CTATTCTTTATCAGTGTCTGGTAATTCTAAGGCTTCAAGTACTAAAAATGAAAGTGCTTCCATGG
51286092 GTACCAATGCTTCAGCGACTAATGGTTCTACGACTTTTATTCCTACGAGCCCTTCCACAGGTGCT
326 GTACCAATGCTTCAGCGACTAATGGTTCTACGACTTTTATTCCTACGAGCCCTTCCACAGGTGCT
* * *
51286157 GGACCTGCTAAAACTTCAAGATTGTCATCTAGTTCAACTATTTATGATTATTTCATGATGTTGAG
391 GGACCTGCTAAAACTTCAAGATCGTCATCTAGTTCAACTATTTATGGTTATTTTATGATGTTGAG
* * * *
51286222 CTCCTAATAATGTTATAATGATTCTAATGTTTTTAACCATTATATGAATGTTGACTTTTTAGTAG
456 TTCTTAATAATGTTATAATGATTCTAAGGTTTTTAACCATTATATGAATGTTGACTTTTTATTAG
51286287 GTTCTGACGGATCTAAGTCTTCTACAAGTAACCCTTCAGGTTCAAATTTTCTATCTTTTTTGTAT
521 GTTCTGACGGATCTAAGTCTTCTACAAGTAACCCTTCAGGTTCAAATTTTCTATCTTTTTTGTAT
*
51286352 TATTTTATCTATTTAACATGATTTTACATATTTTATAATAATTTTGTGGGTTTTGACTTGTCTAC
586 TATTTTATCTATTTAACATGCTTTTACATATTTTATAATAATTTTGTGGGTTTTGACTTGTCTAC
* * *
51286417 TTCTTGTTTTTCACATTCTTGTAATTCTAAAGCAACTAGTACTAAAGATACGGATGCTTCCACGG
651 TTGTTGTTTTTCACATTCTTGTAATTCTAAAGCAACTAGTACTAAAAATACGGATGCTTCCACAG
* * * * *
51286482 GCACTAGTACTTCAGTGACAAACGGTCCTACAGCTTCTACCCCTTCTTCGAGTCCTTCCAGAGGT
716 GCACTAGTACTTCAGTGACAAATGGTCCTACAGCTTCTACTCCTTCTTCGAGCCCTTCCACAGGC
* *
51286547 GTTAGTTCTTTCACAACTAATAGCCATAAAGGATCTGATCATACAAGTTCAAGCAATTTTGCTCA
781 GTTAGTTCTTTCACAACTAATAGCCATAAGGGATCTGGTCATACAAGTTCAAGCAATTTTGCTCA
* * * *
51286612 CTCTGGTTCATTTACAGATTCTGGTCACTCTTCTGCAAGTCATAGTTCTGGTTT
846 CTCTGGTTCGTTTACAGCTTCTGGTCACTCTTCCGCAAGTCATAGTTATGGTTT
* * * *
51286666 TAAAGCTTCAGGCTCCTCATCAGGTTCAACTACTTTTGGCTATTTTATGATGTTGGGTTTTTTAT
1 TAAAGCTTCAGGCTCCTCATCAGGTTCAACTATTTTTTGTTATTTTATGATTTTGGG-TTTTTAT
* * * *
51286731 AAGGTTATAACGATTCTAAAGTTTTTAACATTTATATGACTTTTTACTTTTTATTAGGTTCTGAA
65 AAGGTTATAATGATT-TAAAGTTTTTAGCATTTATATGAATTTTGACTTTTTATTAGGTTCTGAA
* * * * *
51286796 GGATCTAAGTCTTCTACAAGTGACTCTTCAGGTTTGGATTCCATATCATTTTCTTTTATTTCATC
129 GGATATAAGTCTTCTACGAGTGATTCTTCAGGTTTGGATTCCCTATCATTTTCTATTATTTCATC
* * * * * *
51286861 CATTTAACATGCTTATACAGACTTTATAATAAAGTTCTAG-AAATTTTATGGGTCGTGACATATC
194 CATTTGACATGCTTATACATACTTTATAATCAAGTTCTGGAAAATTTT-TGGGTCTTGACATAGC
*
51286925 TATCTATTCTTTATCAGTTTCTGGTAATTCTAAGGCTTCAAGTACTAAAAATGAAAGTGCTTCCA
258 TATCTATTCTTTATCAGTGTCTGGTAATTCTAAGGCTTCAAGTACTAAAAATGAAAGTGCTTCCA
* * *
51286990 TGGGTACCAATGCTTCAGCGACTAACGGTCCTACGACTTTTATTCCTACTAGCCCTTCCACAGGT
323 TGGGTACCAATGCTTCAGCGACTAATGGTTCTACGACTTTTATTCCTACGAGCCCTTCCACAGGT
* *
51287055 GCTGGACTTACTAAAAC-TCAAGATCGTCATCTAGTTCAACTATTTATGGTTATTTTATGATGTT
388 GCTGGACCTGCTAAAACTTCAAGATCGTCATCTAGTTCAACTATTTATGGTTATTTTATGATGTT
51287119 GAGTTCTTAATAATGTTATAATGATTCTAAGGTTTTTAACCATTATATGAATGTTGACTTTTTAT
453 GAGTTCTTAATAATGTTATAATGATTCTAAGGTTTTTAACCATTATATGAATGTTGACTTTTTAT
*
51287184 TAGGTTCTGAAGGATCTAAGTCTTCTACAAGTAACCCTTCAGGTTCAAATTTTCTATCTTTTTTG
518 TAGGTTCTGACGGATCTAAGTCTTCTACAAGTAACCCTTCAGGTTCAAATTTTCTATCTTTTTTG
* * * *
51287249 TATTACTTTATTTATTTAACATGCTTTTACATATTCTATATTAATTTTGTGGGTTTTGACTTGTC
583 TATTATTTTATCTATTTAACATGCTTTTACATATTTTATAATAATTTTGTGGGTTTTGACTTGTC
* * *
51287314 TACTTGTTGTTTCTCACATTCTTGTAATTCTAAAGCAACTAGTACTAAAGATACGGGTGCTTCCA
648 TACTTGTTGTTTTTCACATTCTTGTAATTCTAAAGCAACTAGTACTAAAAATACGGATGCTTCCA
* *
51287379 CAGGCACTAGTACTTCAATGACAAATGGTCCTACAGCTTCTACTCCTCCTTCGAGCCCTTCCACA
713 CAGGCACTAGTACTTCAGTGACAAATGGTCCTACAGCTTCTACTCCTTCTTCGAGCCCTTCCACA
* * *
51287444 GGCGTTAGTTCTTTCACAACTAATAGCCATAAGGGATTTGGTCATACAAGTTCAAGCAATGTCGC
778 GGCGTTAGTTCTTTCACAACTAATAGCCATAAGGGATCTGGTCATACAAGTTCAAGCAATTTTGC
* * *
51287509 TCACTCTGGCTCGTTTACAGCTTCTAGTCACTCTTCCGCAAGTCATAGTTCTGGTTT
843 TCACTCTGGTTCGTTTACAGCTTCTGGTCACTCTTCCGCAAGTCATAGTTATGGTTT
51287566 TAAA
1 TAAA
51287570 ACTCCAGGTT
Statistics
Matches: 3412, Mismatches: 149, Indels: 47
0.95 0.04 0.01
Matches are distributed among these distances:
881 806 0.24
882 23 0.01
883 3 0.00
887 1 0.00
889 2 0.00
890 1 0.00
891 6 0.00
892 1 0.00
893 3 0.00
899 887 0.26
900 1362 0.40
901 317 0.09
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (899 bp):
TAAAGCTTCAGGCTCCTCATCAGGTTCAACTATTTTTTGTTATTTTATGATTTTGGGTTTTTATA
AGGTTATAATGATTTAAAGTTTTTAGCATTTATATGAATTTTGACTTTTTATTAGGTTCTGAAGG
ATATAAGTCTTCTACGAGTGATTCTTCAGGTTTGGATTCCCTATCATTTTCTATTATTTCATCCA
TTTGACATGCTTATACATACTTTATAATCAAGTTCTGGAAAATTTTTGGGTCTTGACATAGCTAT
CTATTCTTTATCAGTGTCTGGTAATTCTAAGGCTTCAAGTACTAAAAATGAAAGTGCTTCCATGG
GTACCAATGCTTCAGCGACTAATGGTTCTACGACTTTTATTCCTACGAGCCCTTCCACAGGTGCT
GGACCTGCTAAAACTTCAAGATCGTCATCTAGTTCAACTATTTATGGTTATTTTATGATGTTGAG
TTCTTAATAATGTTATAATGATTCTAAGGTTTTTAACCATTATATGAATGTTGACTTTTTATTAG
GTTCTGACGGATCTAAGTCTTCTACAAGTAACCCTTCAGGTTCAAATTTTCTATCTTTTTTGTAT
TATTTTATCTATTTAACATGCTTTTACATATTTTATAATAATTTTGTGGGTTTTGACTTGTCTAC
TTGTTGTTTTTCACATTCTTGTAATTCTAAAGCAACTAGTACTAAAAATACGGATGCTTCCACAG
GCACTAGTACTTCAGTGACAAATGGTCCTACAGCTTCTACTCCTTCTTCGAGCCCTTCCACAGGC
GTTAGTTCTTTCACAACTAATAGCCATAAGGGATCTGGTCATACAAGTTCAAGCAATTTTGCTCA
CTCTGGTTCGTTTACAGCTTCTGGTCACTCTTCCGCAAGTCATAGTTATGGTTT
Found at i:51288302 original size:18 final size:18
Alignment explanation
Indices: 51288279--51288320 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
51288269 ACAAAATCTA
51288279 GTTCTTCCACACACACCG
1 GTTCTTCCACACACACCG
** *
51288297 GTTCTTCCAGTCACACTG
1 GTTCTTCCACACACACCG
51288315 GTTCTT
1 GTTCTT
51288321 TGACAACCTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.17, C:0.36, G:0.14, T:0.33
Consensus pattern (18 bp):
GTTCTTCCACACACACCG
Found at i:51288357 original size:198 final size:198
Alignment explanation
Indices: 51288133--51288601 Score: 683
Period size: 198 Copynumber: 2.4 Consensus size: 198
51288123 GCAATAGTTT
* * * * *
51288133 TGGTTCCAAAACTTCAAGCTCTTCCACGAACATTGGTTCTGCTACGACTGATGGCCATACAGCTA
1 TGGTTCCAAAACTTCAGGCTCTTCCACAAACACTGGTTCTGCTACGACTGATGGCCATGCAACTA
* *
51288198 CCGGTTCTACTTTGAGCGC-CTCTTCAGGTTCTAGTTCTCATAAGACTAATAGTCACATGACTTC
66 CTGGTTCTACTTTAAGC-CACTCTTCAGGTTCTAGTTCTCATAAGACTAATAGTCACATGACTTC
* * * * ** *
51288262 TAGTCATACAAAATCTA-GTTCTTCCACACACACCGGTTCTTCCAGTCACACTGGTTCTTTGACA
130 CAGTCATACAAAATC-AGGCTCTTCCACACACACAGGTTCATCCAAACACACTGGTTCTTTCACA
*
51288326 ACCTC
194 ACATC
51288331 TGGTTCCAAAACTTCAGGCTCTTCCACAAACACTGGTTCTGCTACGACTGATGG-CAGTGCAACT
1 TGGTTCCAAAACTTCAGGCTCTTCCACAAACACTGGTTCTGCTACGACTGATGGCCA-TGCAACT
* *
51288395 ACTGGTTCTATTTTAAGCCACTCTTCAGGTTCTAGTTCTCATAAGACTAATAGTCACATGAGTTC
65 ACTGGTTCTACTTTAAGCCACTCTTCAGGTTCTAGTTCTCATAAGACTAATAGTCACATGACTTC
* *
51288460 CGGTCATACAAAATCAGGCTCTTCTACACACACAGGTTCATCCAAACACACTGGTTCTTTCACAA
130 CAGTCATACAAAATCAGGCTCTTCCACACACACAGGTTCATCCAAACACACTGGTTCTTTCACAA
51288525 CATC
195 CATC
* * * *
51288529 TGGTTCCAAAACTTCAGGCTCTTCCACTAGCACTGGTTCTACTACGACTAATGGCCATGCAACTA
1 TGGTTCCAAAACTTCAGGCTCTTCCACAAACACTGGTTCTGCTACGACTGATGGCCATGCAACTA
51288594 CTGGTTCT
66 CTGGTTCT
51288602 GCTACGATTG
Statistics
Matches: 244, Mismatches: 23, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
197 4 0.02
198 238 0.98
199 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (198 bp):
TGGTTCCAAAACTTCAGGCTCTTCCACAAACACTGGTTCTGCTACGACTGATGGCCATGCAACTA
CTGGTTCTACTTTAAGCCACTCTTCAGGTTCTAGTTCTCATAAGACTAATAGTCACATGACTTCC
AGTCATACAAAATCAGGCTCTTCCACACACACAGGTTCATCCAAACACACTGGTTCTTTCACAAC
ATC
Found at i:51288597 original size:33 final size:33
Alignment explanation
Indices: 51288560--51288635 Score: 107
Period size: 33 Copynumber: 2.3 Consensus size: 33
51288550 TTCCACTAGC
*
51288560 ACTGGTTCTACTACGACTAATGGCCATGCAACT
1 ACTGGTTCTACTACGACTAATGGCCATGAAACT
* * *
51288593 ACTGGTTCTGCTACGATTGATGGCCATGAAACT
1 ACTGGTTCTACTACGACTAATGGCCATGAAACT
*
51288626 ACTAGTTCTA
1 ACTGGTTCTA
51288636 TTTCAAGCCA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (33 bp):
ACTGGTTCTACTACGACTAATGGCCATGAAACT
Found at i:51289071 original size:198 final size:198
Alignment explanation
Indices: 51288744--51289114 Score: 625
Period size: 198 Copynumber: 1.9 Consensus size: 198
51288734 TCTTCCAATC
51288744 ACACTGGTTCTGCTACAACTGATGGCCATACAACTACTGGTTCTATTTCGAGCCACTCTTCAGGT
1 ACACTGGTTCTGCTACAACTGATGGCCATACAACTACTGGTTCTATTTCGAGCCACTCTTCAGGT
* * *
51288809 TCTAGTTCTCATAAGACTAACAGTCACACGACATCTGCTCATACAAAATCTGGCTCTTCTACACA
66 TCTACTTCTCATAAGACTAACAGTCACACGACATCTACTCATACAAAATCCGGCTCTTCTACACA
51288874 CACAGGTTCCTCCAAACACACAGGTTCTTTCAAAACCTCTGGTTCTAAAATTTCAGGCTCTTCCA
131 CACAGGTTCCTCCAAACACACAGGTTCTTTCAAAACCTCTGGTTCTAAAATTTCAGGCTCTTCCA
51288939 CAA
196 CAA
* * * *
51288942 ACACTGGTTCTGCTACGACTGGTGGCCATACAACTACTGGTTCTATTTCGAGCCATTCTTCTGGT
1 ACACTGGTTCTGCTACAACTGATGGCCATACAACTACTGGTTCTATTTCGAGCCACTCTTCAGGT
* * *
51289007 TCTACTTCTCATAAGAGTAATAGTCACACGACTTCTACTCATACAAAATCCGGCTCTTCTACACA
66 TCTACTTCTCATAAGACTAACAGTCACACGACATCTACTCATACAAAATCCGGCTCTTCTACACA
* * *
51289072 CACAGGTTCTTCCAAACACACTGGTTCTTTCACAACCTCTGGT
131 CACAGGTTCCTCCAAACACACAGGTTCTTTCAAAACCTCTGGT
51289115 CACTCTTCCA
Statistics
Matches: 160, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
198 160 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (198 bp):
ACACTGGTTCTGCTACAACTGATGGCCATACAACTACTGGTTCTATTTCGAGCCACTCTTCAGGT
TCTACTTCTCATAAGACTAACAGTCACACGACATCTACTCATACAAAATCCGGCTCTTCTACACA
CACAGGTTCCTCCAAACACACAGGTTCTTTCAAAACCTCTGGTTCTAAAATTTCAGGCTCTTCCA
CAA
Found at i:51292537 original size:21 final size:23
Alignment explanation
Indices: 51292511--51292553 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
51292501 TACCACCTTG
*
51292511 AAAGTTT-GTCAAAAAT-TTAAT
1 AAAGTTTGGGCAAAAATATTAAT
51292532 AAAGTTTGGGCAAAAATATTAA
1 AAAGTTTGGGCAAAAATATTAA
51292554 ACTCGAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 8 0.42
23 4 0.21
ACGTcount: A:0.49, C:0.05, G:0.14, T:0.33
Consensus pattern (23 bp):
AAAGTTTGGGCAAAAATATTAAT
Found at i:51293684 original size:55 final size:55
Alignment explanation
Indices: 51293599--51293716 Score: 191
Period size: 55 Copynumber: 2.1 Consensus size: 55
51293589 TGGAAGTTGT
* *
51293599 GATACCCCTAGTAGTGTTGAAACGAGAAGAATTGAAACCATCTACAGTGGTATTGC
1 GATA-CCCTAGTAGTGTTGAAACGAGAAGAATTGAAACCATCTAAAGTGGTATCGC
* *
51293655 GATACCCTTGTAGTGTTGAAACGAGAAGAATTGAAGCCATCTAAAGTGGTATCGC
1 GATACCCTAGTAGTGTTGAAACGAGAAGAATTGAAACCATCTAAAGTGGTATCGC
51293710 GATACCC
1 GATACCC
51293717 AACCTCCAAA
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
55 54 0.93
56 4 0.07
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.25
Consensus pattern (55 bp):
GATACCCTAGTAGTGTTGAAACGAGAAGAATTGAAACCATCTAAAGTGGTATCGC
Found at i:51296288 original size:35 final size:35
Alignment explanation
Indices: 51296242--51296316 Score: 150
Period size: 35 Copynumber: 2.1 Consensus size: 35
51296232 ATTGTAATAT
51296242 TGATTTATTGTTCATACTTATCTTTTCTACTCTCA
1 TGATTTATTGTTCATACTTATCTTTTCTACTCTCA
51296277 TGATTTATTGTTCATACTTATCTTTTCTACTCTCA
1 TGATTTATTGTTCATACTTATCTTTTCTACTCTCA
51296312 TGATT
1 TGATT
51296317 CTCCATAGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.20, C:0.19, G:0.07, T:0.55
Consensus pattern (35 bp):
TGATTTATTGTTCATACTTATCTTTTCTACTCTCA
Found at i:51297361 original size:20 final size:20
Alignment explanation
Indices: 51297338--51297403 Score: 87
Period size: 20 Copynumber: 3.3 Consensus size: 20
51297328 TTTTGGTGGC
*
51297338 TTGTCCACATTACTGGCGGT
1 TTGTCTACATTACTGGCGGT
* *
51297358 TTGTCTACATTACTGGTGGC
1 TTGTCTACATTACTGGCGGT
* *
51297378 TTATCTACATTACTGGCAGT
1 TTGTCTACATTACTGGCGGT
51297398 TTGTCT
1 TTGTCT
51297404 GCAATATTAG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.17, C:0.21, G:0.21, T:0.41
Consensus pattern (20 bp):
TTGTCTACATTACTGGCGGT
Found at i:51300582 original size:38 final size:38
Alignment explanation
Indices: 51300529--51300613 Score: 102
Period size: 38 Copynumber: 2.3 Consensus size: 38
51300519 GAATGATAAT
* *
51300529 TCATGCC-ACTGTTTCTGTTGCTGATCGA-ATGTTTAAA
1 TCATGCCTACTGTTTCTGCTACTGAT-GACATGTTTAAA
* * *
51300566 TCATGCCTATTGTTTCTGCTACTGATTACATGTTTTAA
1 TCATGCCTACTGTTTCTGCTACTGATGACATGTTTAAA
51300604 TCATGCCTAC
1 TCATGCCTAC
51300614 CCCATTGTTC
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
37 8 0.20
38 32 0.80
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.42
Consensus pattern (38 bp):
TCATGCCTACTGTTTCTGCTACTGATGACATGTTTAAA
Found at i:51300767 original size:20 final size:20
Alignment explanation
Indices: 51300707--51300768 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 20
51300697 ATTAAAATTT
51300707 TGGTGGCTTGTCCACATTAC
1 TGGTGGCTTGTCCACATTAC
** * * *
51300727 TGGCAGTTTATCTACATTAC
1 TGGTGGCTTGTCCACATTAC
*
51300747 TGGTGGCTTGTCCACAATAC
1 TGGTGGCTTGTCCACATTAC
51300767 TG
1 TG
51300769 TCTGGTTGTC
Statistics
Matches: 31, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (20 bp):
TGGTGGCTTGTCCACATTAC
Found at i:51300788 original size:40 final size:40
Alignment explanation
Indices: 51300707--51300789 Score: 103
Period size: 40 Copynumber: 2.1 Consensus size: 40
51300697 ATTAAAATTT
* * *
51300707 TGGTGGCTTGTCCACATTACTGGCAGTTTATCTACATTAC
1 TGGTGGCTTGTCCACAATACTGGCAGGTTATCTACAATAC
* * * *
51300747 TGGTGGCTTGTCCACAATACTGTCTGGTTGTCTGCAATAC
1 TGGTGGCTTGTCCACAATACTGGCAGGTTATCTACAATAC
51300787 TGG
1 TGG
51300790 CATTTTATCT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.36
Consensus pattern (40 bp):
TGGTGGCTTGTCCACAATACTGGCAGGTTATCTACAATAC
Found at i:51302195 original size:27 final size:26
Alignment explanation
Indices: 51302108--51302202 Score: 109
Period size: 26 Copynumber: 3.5 Consensus size: 26
51302098 TATTAGCTAT
* *
51302108 AAAGGCATCCCTTTCCATAGACTGCCAC
1 AAAGGCTTCCATTT-CATAGA-TGCCAC
* * * *
51302136 AGAGGCTTTCATTTCAAATATGCCAC
1 AAAGGCTTCCATTTCATAGATGCCAC
51302162 AAAGGCTTCCATTTCATAGATGGCCAC
1 AAAGGCTTCCATTTCATAGAT-GCCAC
51302189 AAAGGCTTCCATTT
1 AAAGGCTTCCATTT
51302203 TCTGACGTGT
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
26 23 0.41
27 23 0.41
28 10 0.18
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
AAAGGCTTCCATTTCATAGATGCCAC
Found at i:51312243 original size:15 final size:16
Alignment explanation
Indices: 51312214--51312243 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
51312204 AGAAGATGCT
51312214 TTAACACATTATCAAA
1 TTAACACATTATCAAA
51312230 TTAACACA-TATCAA
1 TTAACACATTATCAA
51312244 CAAGACACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:51313453 original size:25 final size:25
Alignment explanation
Indices: 51313383--51313478 Score: 106
Period size: 25 Copynumber: 3.8 Consensus size: 25
51313373 TATGTACATA
51313383 TATGCTCACATGAGCTGTGAATAAG
1 TATGCTCACATGAGCTGTGAATAAG
*
51313408 TATGCTCA-ATTGAGCTATGAATAAG
1 TATGCTCACA-TGAGCTGTGAATAAG
* *
51313433 TATGCTCACACGAGTTGTGAA-AATGGG
1 TATGCTCACATGAGCTGTGAATAA---G
*
51313460 TCTGCTCACATGAGCTGTG
1 TATGCTCACATGAGCTGTG
51313479 GGTCAGAACA
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
24 3 0.05
25 38 0.64
26 1 0.02
27 17 0.29
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (25 bp):
TATGCTCACATGAGCTGTGAATAAG
Found at i:51318967 original size:13 final size:12
Alignment explanation
Indices: 51318949--51319018 Score: 50
Period size: 13 Copynumber: 5.3 Consensus size: 12
51318939 TGAGTAAACA
51318949 GAAATGGTGATAT
1 GAAATGGT-ATAT
*
51318962 GAAATGGATATGT
1 GAAATGG-TATAT
*
51318975 GAAATGATTATAT
1 GAAATG-GTATAT
*
51318988 GGAAATAGATATAT
1 -GAAAT-GGTATAT
*
51319002 GAAATGGCTATTT
1 GAAATGG-TATAT
51319015 GAAA
1 GAAA
51319019 AGGTTACTTG
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
12 1 0.02
13 33 0.72
14 11 0.24
15 1 0.02
ACGTcount: A:0.43, C:0.01, G:0.24, T:0.31
Consensus pattern (12 bp):
GAAATGGTATAT
Found at i:51318992 original size:27 final size:26
Alignment explanation
Indices: 51318949--51319007 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
51318939 TGAGTAAACA
* * *
51318949 GAAATGGTGATATGAAATGGATATGT
1 GAAATGATGATATGAAATAGATATAT
*
51318975 GAAATGATTATATGGAAATAGATATAT
1 GAAATGATGATAT-GAAATAGATATAT
51319002 GAAATG
1 GAAATG
51319008 GCTATTTGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 11 0.39
27 17 0.61
ACGTcount: A:0.44, C:0.00, G:0.25, T:0.31
Consensus pattern (26 bp):
GAAATGATGATATGAAATAGATATAT
Found at i:51321630 original size:14 final size:14
Alignment explanation
Indices: 51321611--51321637 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
51321601 CATTTCTTGG
51321611 TCGGTTCAGTTCAC
1 TCGGTTCAGTTCAC
51321625 TCGGTTCAGTTCA
1 TCGGTTCAGTTCA
51321638 ACTGGACCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.26, G:0.22, T:0.37
Consensus pattern (14 bp):
TCGGTTCAGTTCAC
Found at i:51327714 original size:28 final size:28
Alignment explanation
Indices: 51327674--51327874 Score: 240
Period size: 28 Copynumber: 7.2 Consensus size: 28
51327664 TAAACACATG
* * *
51327674 AGAAAAAGAAAGCCTTTGTTGCGATCTA
1 AGAAAAGGGAAGCCTTTGTGGCGATCTA
*
51327702 AGAAAAGGGAAGCCTTTGTGGCGATTTA
1 AGAAAAGGGAAGCCTTTGTGGCGATCTA
* * *
51327730 TGAAAAGAGAAGCCTTTGTGGTGATCTA
1 AGAAAAGGGAAGCCTTTGTGGCGATCTA
51327758 AGAAAAGGGAAGCCTTTGTGGCGATCTA
1 AGAAAAGGGAAGCCTTTGTGGCGATCTA
*
51327786 AGAAAAGGGAAGCCTTTATGGCGATCTA
1 AGAAAAGGGAAGCCTTTGTGGCGATCTA
* ** * *
51327814 TGAAAAAAGAAGCCTTTGTGGCTATATA
1 AGAAAAGGGAAGCCTTTGTGGCGATCTA
** * *
51327842 TCAAAAGAGAAGCTTTTGTGGCGATCTA
1 AGAAAAGGGAAGCCTTTGTGGCGATCTA
*
51327870 TGAAA
1 AGAAA
51327875 TAGAAGCTTG
Statistics
Matches: 149, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 149 1.00
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.25
Consensus pattern (28 bp):
AGAAAAGGGAAGCCTTTGTGGCGATCTA
Found at i:51327775 original size:84 final size:84
Alignment explanation
Indices: 51327674--51327874 Score: 278
Period size: 84 Copynumber: 2.4 Consensus size: 84
51327664 TAAACACATG
* * * * * *
51327674 AGAAAAAGAAAGCCTTTGTTGCGATCTAAGAAAAGGGAAGCCTTTGTGGCGATTTATGAAAAGAG
1 AGAAAAGGGAAGCCTTTGTGGCGATCTAAGAAAAGGGAAGCCTTTATGGCGATCTATGAAAAAAG
*
51327739 AAGCCTTTGTGG-TGATCTA
66 AAGCCTTTGTGGCT-ATATA
51327758 AGAAAAGGGAAGCCTTTGTGGCGATCTAAGAAAAGGGAAGCCTTTATGGCGATCTATGAAAAAAG
1 AGAAAAGGGAAGCCTTTGTGGCGATCTAAGAAAAGGGAAGCCTTTATGGCGATCTATGAAAAAAG
51327823 AAGCCTTTGTGGCTATATA
66 AAGCCTTTGTGGCTATATA
** * * *
51327842 TCAAAAGAGAAGCTTTTGTGGCGATCTATGAAA
1 AGAAAAGGGAAGCCTTTGTGGCGATCTAAGAAA
51327875 TAGAAGCTTG
Statistics
Matches: 104, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
84 103 0.99
85 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.25
Consensus pattern (84 bp):
AGAAAAGGGAAGCCTTTGTGGCGATCTAAGAAAAGGGAAGCCTTTATGGCGATCTATGAAAAAAG
AAGCCTTTGTGGCTATATA
Found at i:51327908 original size:27 final size:27
Alignment explanation
Indices: 51327710--51327902 Score: 96
Period size: 28 Copynumber: 7.0 Consensus size: 27
51327700 TAAGAAAAGG
* *
51327710 GAAGCCTT-TGTGGCGATTTATGAAAAGA
1 GAAG-CTTGTGTGGCGATCTATG-AAATA
* *
51327738 GAAGCCTT-TGTGGTGATCTAAGAAA-A
1 GAAG-CTTGTGTGGCGATCTATGAAATA
*
51327764 GGGAAGCCTT-TGTGGCGATCTAAGAAA-A
1 --GAAG-CTTGTGTGGCGATCTATGAAATA
* *
51327792 GGGAAGCCTT-TATGGCGATCTATGAAAAAA
1 --GAAG-CTTGTGTGGCGATCTATG-AAATA
* * * *
51327822 GAAGCCTT-TGTGGCTATATATCAAAAGA
1 GAAG-CTTGTGTGGCGATCTAT-GAAATA
*
51327850 GAAGCTTTTGTGGCGATCTATGAAATA
1 GAAGCTTGTGTGGCGATCTATGAAATA
*
51327877 GAAGCTTGTGTGGTGGATC-ATGAAAT
1 GAAGCTTGTGTGG-CGATCTATGAAAT
51327903 GAAAGCCCTT
Statistics
Matches: 141, Mismatches: 17, Indels: 15
0.82 0.10 0.09
Matches are distributed among these distances:
26 1 0.01
27 29 0.21
28 107 0.76
29 3 0.02
30 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (27 bp):
GAAGCTTGTGTGGCGATCTATGAAATA
Found at i:51333167 original size:15 final size:16
Alignment explanation
Indices: 51333147--51333181 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
51333137 ATCAAAATAA
51333147 TCAAACTTAATTC-AT
1 TCAAACTTAATTCTAT
*
51333162 TCAAACTTCATTCTAT
1 TCAAACTTAATTCTAT
51333178 TCAA
1 TCAA
51333182 TTCAATCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.37, C:0.23, G:0.00, T:0.40
Consensus pattern (16 bp):
TCAAACTTAATTCTAT
Found at i:51334306 original size:14 final size:14
Alignment explanation
Indices: 51334289--51334315 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
51334279 CTCACAGCCT
51334289 CTATGTCACACCCC
1 CTATGTCACACCCC
51334303 CTATGTCACACCC
1 CTATGTCACACCC
51334316 GAAAAATGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.48, G:0.07, T:0.22
Consensus pattern (14 bp):
CTATGTCACACCCC
Found at i:51337275 original size:10 final size:10
Alignment explanation
Indices: 51337260--51337297 Score: 58
Period size: 10 Copynumber: 3.6 Consensus size: 10
51337250 GAACATGATG
51337260 AATTTTAATT
1 AATTTTAATT
51337270 AATTTTATAGTT
1 AATTTTA-A-TT
51337282 AATTTTAATT
1 AATTTTAATT
51337292 AATTTT
1 AATTTT
51337298 GACTATTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 15 0.58
11 2 0.08
12 9 0.35
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (10 bp):
AATTTTAATT
Found at i:51339864 original size:6 final size:6
Alignment explanation
Indices: 51339853--51339888 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
51339843 TTAAATGGGT
*
51339853 AACCAA AACCAA AACCAA AACTAA AACCAA AACCAA
1 AACCAA AACCAA AACCAA AACCAA AACCAA AACCAA
51339889 GGGAGGCAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.67, C:0.31, G:0.00, T:0.03
Consensus pattern (6 bp):
AACCAA
Found at i:51352691 original size:20 final size:19
Alignment explanation
Indices: 51352644--51352693 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
51352634 CAAGATAAAC
51352644 ATTAAATT-A-AATTTAAT
1 ATTAAATTAATAATTTAAT
51352661 ATTAAGA-TAATAACTTTAAT
1 ATTAA-ATTAATAA-TTTAAT
51352681 ATTAAATTAATAA
1 ATTAAATTAATAA
51352694 AATACTATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
17 6 0.21
18 2 0.07
19 3 0.11
20 17 0.61
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (19 bp):
ATTAAATTAATAATTTAAT
Found at i:51354047 original size:37 final size:37
Alignment explanation
Indices: 51353997--51354070 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
51353987 CACAAATGGA
51353997 TTTAAAAATAATTCATCTTGGGTCCAGTCTAATGTAT
1 TTTAAAAATAATTCATCTTGGGTCCAGTCTAATGTAT
51354034 TTTAAAAATAATTCATCTTGGGTCCAGTCTAATGTAT
1 TTTAAAAATAATTCATCTTGGGTCCAGTCTAATGTAT
51354071 CATTCTACCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.41
Consensus pattern (37 bp):
TTTAAAAATAATTCATCTTGGGTCCAGTCTAATGTAT
Found at i:51358126 original size:92 final size:92
Alignment explanation
Indices: 51358021--51358192 Score: 326
Period size: 92 Copynumber: 1.9 Consensus size: 92
51358011 ACTCAAGAGA
*
51358021 TAAATGGATTTTGGTAGGTGAGTATGTTCATAAGTTAGCAAATTACCAAGTTGCCATGAATTTAT
1 TAAATGGATTTTGGTAGGTGAGTATGTTCATAAGTTAGCAAATTACCAAGTTACCATGAATTTAT
51358086 TCGTAACAACATGAAATAGTCAGGAGG
66 TCGTAACAACATGAAATAGTCAGGAGG
*
51358113 TAAATGGATTTTGGTAGGTGAGTATGTTCATAAGTTAGCAAATTACCAAGTTACCGTGAATTTAT
1 TAAATGGATTTTGGTAGGTGAGTATGTTCATAAGTTAGCAAATTACCAAGTTACCATGAATTTAT
51358178 TCGTAACAACATGAA
66 TCGTAACAACATGAA
51358193 CATAAGTTTA
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
92 78 1.00
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.33
Consensus pattern (92 bp):
TAAATGGATTTTGGTAGGTGAGTATGTTCATAAGTTAGCAAATTACCAAGTTACCATGAATTTAT
TCGTAACAACATGAAATAGTCAGGAGG
Found at i:51362768 original size:18 final size:17
Alignment explanation
Indices: 51362740--51362786 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
51362730 AAATGATGGA
51362740 AAAAG-AAAAGAAAAGG
1 AAAAGAAAAAGAAAAGG
*
51362756 AGAAGGAAAAAGAAAAGG
1 A-AAAGAAAAAGAAAAGG
51362774 AAAAGAAAAAGAA
1 AAAAGAAAAAGAA
51362787 GAAGCCAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 1 0.04
17 14 0.52
18 12 0.44
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (17 bp):
AAAAGAAAAAGAAAAGG
Found at i:51365938 original size:50 final size:50
Alignment explanation
Indices: 51365863--51366099 Score: 296
Period size: 50 Copynumber: 4.7 Consensus size: 50
51365853 GAGGATAAGA
* *
51365863 TCCCATGTAAGACGATGTCTGGGACATGGCATTGGAACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
*
51365913 TCCCATGTAAGACCATGTCTGGGACAT-GAAGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCA-TTGGCACCGAGATGAGAGG
* * * *
51365963 TCCCATGTAAGACCATGTCCGGGACATGGCGTTGGCACCAAGATAAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
** * * * * * **
51366013 TCCCCCGTAAGACCTTGTCTAGGACATGGCATGGGCACCTATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* *
51366063 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
51366100 GTACAAGAAA
Statistics
Matches: 158, Mismatches: 27, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
49 2 0.01
50 155 0.98
51 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.21
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:51368865 original size:51 final size:51
Alignment explanation
Indices: 51368804--51369431 Score: 660
Period size: 51 Copynumber: 12.5 Consensus size: 51
51368794 ACAGCTGAAG
* * *
51368804 TTGCAGTGGAACAGATTAAAGCTAAAGGCAACGAATCTTATTTCCCTGGCT
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCA
* * * * *
51368855 TTACAGTGGAATAGATTAAAACTGAAGGCAGTGAATCTT-TTTTCCTGGCA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCA
** * * * * * *
51368905 TTTTATTGGAACAGATTAAAGCTGAAAGCGGTGAATCTTATTTCCCTAGCG
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCA
* * * *
51368956 TTGTAGTGGAACAGATTAAAGATGAAGGCAGCGAATCTT-TTTCCCTAGCG
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCA
* * * * *
51369006 TTACAGT-----AGATTAAAGTTGAAGGCAACAAATCTTATTTCCTTGGCA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCA
** * * *
51369052 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGTAAATATTATTTCCCTAGCC
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCA
* * * * *
51369103 TTGCAGTAGAATAGATTAAAG-TAGAAGGCAACGAGTCTTATCTCCCTGGCA
1 TTGCAGTGGAACAGATTAAAGCT-GAAGGCAGCGAATCTTATTTCCCTGGCA
* * * *
51369154 TTGTAGTGGAATAGATTAAAGCTGAAGACAGCGAATCTTATTTCCTTGGCA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCA
* ** *
51369205 TTGCAGTGGAACAGATTAAAGCTGAAGGTAATGAATCTTATTTCCCTAGCA
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCA
* * * *
51369256 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCAAATATTATTTCCCTAGCG
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCA
* * * * **
51369307 TTGCAGTAGAGCAGATTAAAGCTGAGGGCAACGAATCTTATTTCCCTGGTG
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCA
* * * **
51369358 TTGCAGTGGAATAGATTAAAGCTGAAGGCGGTGAATCTTATTTCCCTGGTG
1 TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCA
*
51369409 TTGCAGTGGAATAGATTAAAGCT
1 TTGCAGTGGAACAGATTAAAGCT
51369432 AAAAGTTATG
Statistics
Matches: 482, Mismatches: 86, Indels: 18
0.82 0.15 0.03
Matches are distributed among these distances:
45 24 0.05
46 14 0.03
50 58 0.12
51 385 0.80
52 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.29
Consensus pattern (51 bp):
TTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCA
Found at i:51369906 original size:15 final size:15
Alignment explanation
Indices: 51369878--51369919 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
51369868 CCCGGGGCCC
51369878 AAAACC-AA-AAATT
1 AAAACCAAATAAATT
*
51369891 AAAACTAAATAAATT
1 AAAACCAAATAAATT
51369906 AAAACCAAATAAAT
1 AAAACCAAATAAAT
51369920 AAAGTCCGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 5 0.20
14 2 0.08
15 18 0.72
ACGTcount: A:0.69, C:0.12, G:0.00, T:0.19
Consensus pattern (15 bp):
AAAACCAAATAAATT
Found at i:51371001 original size:3 final size:3
Alignment explanation
Indices: 51370993--51371112 Score: 150
Period size: 3 Copynumber: 40.0 Consensus size: 3
51370983 GTTTAATACT
51370993 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * * * * *
51371041 TTA TTA TTA CTA CTA CTA CTG CTA CTA CTA CTA CTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
51371089 TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA
51371113 GTACTTTTTT
Statistics
Matches: 113, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 113 1.00
ACGTcount: A:0.33, C:0.07, G:0.01, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:51386318 original size:25 final size:25
Alignment explanation
Indices: 51386290--51386370 Score: 101
Period size: 25 Copynumber: 3.2 Consensus size: 25
51386280 TGTAAACGGT
51386290 AAGCTCTTCTGAGCTGAATAATGGG
1 AAGCTCTTCTGAGCTGAATAATGGG
* *
51386315 AAGCTCATGTGAGCTGAATAATGGG
1 AAGCTCTTCTGAGCTGAATAATGGG
* * *
51386340 AAGCTCATGC-GAGCTGAGTATTGGG
1 AAGCTC-TTCTGAGCTGAATAATGGG
51386365 AAGCTC
1 AAGCTC
51386371 ATAAGAGGTG
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (25 bp):
AAGCTCTTCTGAGCTGAATAATGGG
Found at i:51386371 original size:25 final size:25
Alignment explanation
Indices: 51386300--51386372 Score: 119
Period size: 25 Copynumber: 2.9 Consensus size: 25
51386290 AAGCTCTTCT
*
51386300 GAGCTGAATAATGGGAAGCTCATGT
1 GAGCTGAATAATGGGAAGCTCATGC
51386325 GAGCTGAATAATGGGAAGCTCATGC
1 GAGCTGAATAATGGGAAGCTCATGC
* *
51386350 GAGCTGAGTATTGGGAAGCTCAT
1 GAGCTGAATAATGGGAAGCTCAT
51386373 AAGAGGTGAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.33, T:0.23
Consensus pattern (25 bp):
GAGCTGAATAATGGGAAGCTCATGC
Found at i:51388124 original size:18 final size:18
Alignment explanation
Indices: 51388101--51388136 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
51388091 TTGTAACAAC
*
51388101 CCCAAATTCTCTAGTCAA
1 CCCAAATTCTCAAGTCAA
51388119 CCCAAATTCTCAAGTCAA
1 CCCAAATTCTCAAGTCAA
51388137 AATTTGAGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.33, G:0.06, T:0.25
Consensus pattern (18 bp):
CCCAAATTCTCAAGTCAA
Found at i:51414393 original size:9 final size:9
Alignment explanation
Indices: 51414376--51414412 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
51414366 TAAGTTTTCG
51414376 AATTCGAAT
1 AATTCGAAT
*
51414385 AACTCGAAT
1 AATTCGAAT
51414394 AATTCGAAT
1 AATTCGAAT
51414403 AATTCGAAT
1 AATTCGAAT
51414412 A
1 A
51414413 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:51416635 original size:13 final size:13
Alignment explanation
Indices: 51416617--51416646 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
51416607 CTTTTAAGGT
51416617 CAAATTAGTTAAA
1 CAAATTAGTTAAA
51416630 CAAATTAGTTAAA
1 CAAATTAGTTAAA
51416643 CAAA
1 CAAA
51416647 CTTTTAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.57, C:0.10, G:0.07, T:0.27
Consensus pattern (13 bp):
CAAATTAGTTAAA
Found at i:51417476 original size:18 final size:19
Alignment explanation
Indices: 51417455--51417490 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
51417445 TTTAAAATAC
51417455 TTTTAAAAT-ATTTTTTAT
1 TTTTAAAATAATTTTTTAT
51417473 TTTTAAAATAATTTTTTA
1 TTTTAAAATAATTTTTTA
51417491 ATGTTTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTTAAAATAATTTTTTAT
Found at i:51418286 original size:24 final size:25
Alignment explanation
Indices: 51418236--51418288 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
51418226 CAAAACTAAA
51418236 AAAATATTTTAATATAATTTAAAAT
1 AAAATATTTTAATATAATTTAAAAT
*
51418261 AAAATATTTTAATAT-ATTTAATAT
1 AAAATATTTTAATATAATTTAAAAT
51418285 AAAA
1 AAAA
51418289 ATAATTATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (25 bp):
AAAATATTTTAATATAATTTAAAAT
Found at i:51418289 original size:25 final size:25
Alignment explanation
Indices: 51418235--51418440 Score: 89
Period size: 25 Copynumber: 8.3 Consensus size: 25
51418225 ACAAAACTAA
*
51418235 AAAAATATTTTAATATAATTTAAAAT
1 AAAAATATTTTAATAT-ATTTAATAT
51418261 -AAAATATTTTAATATATTTAATAT
1 AAAAATATTTTAATATATTTAATAT
* * *
51418285 AAAAATAATTATATTAAAATGTT-AT-T
1 AAAAAT-ATTTTAAT-ATAT-TTAATAT
* * * *
51418311 AAATTATTTATTTTTATTTTTATTAAATTAT
1 AAA--A-ATA-TTTTA-ATATATTTAA-TAT
*
51418342 AAAAATATTTGAA-ATATTTTAATAT
1 AAAAATATTTTAATATA-TTTAATAT
*
51418367 ----A-A-TTTAATATA--AAACTA-
1 AAAAATATTTTAATATATTTAA-TAT
* *
51418384 AAAAATATTTTAACATAATTTAAAAT
1 AAAAATATTTTAATAT-ATTTAATAT
51418410 -AAAATATTTTAATATATTTAATAT
1 AAAAATATTTTAATATATTTAATAT
51418434 AAAAATA
1 AAAAATA
51418441 ATTATATTAA
Statistics
Matches: 133, Mismatches: 21, Indels: 53
0.64 0.10 0.26
Matches are distributed among these distances:
17 2 0.02
18 2 0.02
19 4 0.03
20 4 0.03
21 2 0.02
22 1 0.01
23 7 0.05
24 17 0.13
25 46 0.35
26 16 0.12
27 9 0.07
28 7 0.05
29 9 0.07
30 3 0.02
31 4 0.03
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (25 bp):
AAAAATATTTTAATATATTTAATAT
Found at i:51418424 original size:33 final size:33
Alignment explanation
Indices: 51418343--51418435 Score: 107
Period size: 33 Copynumber: 2.8 Consensus size: 33
51418333 TTAAATTATA
*
51418343 AAAATATTTGAAATATTTTAATATAATTTAATAT
1 AAAATATTT-AAATATTTTAATATAATTTAAAAT
** *
51418377 AAAACTA-AAAAATATTTTAACATAATTTAAAAT
1 AAAA-TATTTAAATATTTTAATATAATTTAAAAT
*
51418410 AAAATATTTTAATATATTTAATATAA
1 AAAATATTTAAATAT-TTTAATATAA
51418436 AAATAATTAT
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
32 2 0.04
33 31 0.65
34 13 0.27
35 2 0.04
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.42
Consensus pattern (33 bp):
AAAATATTTAAATATTTTAATATAATTTAAAAT
Found at i:51418469 original size:23 final size:23
Alignment explanation
Indices: 51418443--51418490 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
51418433 TAAAAATAAT
51418443 TATATTAATT-TTTTATTAAATTA
1 TATATT-ATTATTTTATTAAATTA
*
51418466 TATATTTTTATTTTATTAAATTA
1 TATATTATTATTTTATTAAATTA
51418489 TA
1 TA
51418491 AAAATATTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 2 0.09
23 21 0.91
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (23 bp):
TATATTATTATTTTATTAAATTA
Found at i:51418539 original size:32 final size:32
Alignment explanation
Indices: 51418501--51418562 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
51418491 AAAATATTTG
* * *
51418501 AAATATTTTAATATAATTTAATATTAAATAAA
1 AAATATTTTAACATAATTTAAAATAAAATAAA
*
51418533 AAATATTTTGACATAATTTAAAATAAAATA
1 AAATATTTTAACATAATTTAAAATAAAATA
51418563 TTTTAATATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (32 bp):
AAATATTTTAACATAATTTAAAATAAAATAAA
Found at i:51418566 original size:25 final size:24
Alignment explanation
Indices: 51418532--51418584 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
51418522 TATTAAATAA
51418532 AAAATATTTTGACATA-ATTTAAAAT
1 AAAATATTTT-A-ATATATTTAAAAT
*
51418557 AAAATATTTTAATATATTTAATAT
1 AAAATATTTTAATATATTTAAAAT
51418581 AAAA
1 AAAA
51418585 ATAATTATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 3 0.12
24 13 0.50
25 10 0.38
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (24 bp):
AAAATATTTTAATATATTTAAAAT
Found at i:51418585 original size:25 final size:27
Alignment explanation
Indices: 51418521--51418587 Score: 81
Period size: 25 Copynumber: 2.7 Consensus size: 27
51418511 ATATAATTTA
*
51418521 ATATTAAATA-AAAAATATTTTGACAT
1 ATATTTAATATAAAAATATTTTGACAT
*
51418547 A-ATTTAAAAT-AAAATATTTT-A-AT
1 ATATTTAATATAAAAATATTTTGACAT
51418570 ATATTTAATATAAAAATA
1 ATATTTAATATAAAAATA
51418588 ATTATATTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
23 3 0.09
24 9 0.26
25 22 0.63
26 1 0.03
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.40
Consensus pattern (27 bp):
ATATTTAATATAAAAATATTTTGACAT
Found at i:51418603 original size:147 final size:148
Alignment explanation
Indices: 51418197--51418663 Score: 810
Period size: 147 Copynumber: 3.1 Consensus size: 148
51418187 AAAAACAAAT
* * * *
51418197 TATTTTAAATATTTTAATATAATTTAGTACAAAACTAAAAAAATATTTTAATATAATTTAAAATA
1 TATTTGAAATATTTTAATATAATTTAATATAAAACT-AAAAAATATTTTAACATAATTTAAAATA
* * *
51418262 AAATATTTTAATATATTTAATATAAAAATAATTATATTAAAATGTTATTAAATTATTTATTTTTA
65 AAATATTTTAATATATTTAATATAAAAATAATTATATTAAATTTTTATTAAATTATATATTTTTA
51418327 TTTTTATTAAATTATAAAAA
130 -TTTTATTAAATTATAAAAA
51418347 TATTTGAAATATTTTAATATAATTTAATATAAAACTAAAAAATATTTTAACATAATTTAAAATAA
1 TATTTGAAATATTTTAATATAATTTAATATAAAACTAAAAAATATTTTAACATAATTTAAAATAA
*
51418412 AATATTTTAATATATTTAATATAAAAATAATTATATTAATTTTTTATTAAATTATATATTTTTAT
66 AATATTTTAATATATTTAATATAAAAATAATTATATTAAATTTTTATTAAATTATATATTTTTAT
51418477 TTTATTAAATTATAAAAA
131 TTTATTAAATTATAAAAA
* *
51418495 TATTTGAAATATTTTAATATAATTTAATATTAAA-TAAAAAATATTTTGACATAATTTAAAATAA
1 TATTTGAAATATTTTAATATAATTTAATATAAAACTAAAAAATATTTTAACATAATTTAAAATAA
*
51418559 AATATTTTAATATATTTAATATAAAAATAATTATATTAACTTTTTATTAAATTATATATTTTTAT
66 AATATTTTAATATATTTAATATAAAAATAATTATATTAAATTTTTATTAAATTATATATTTTTAT
51418624 TTTATTAAATTATAAAAA
131 TTTATTAAATTATAAAAA
51418642 TATTTGAAATATTTTAATATAA
1 TATTTGAAATATTTTAATATAA
51418664 AAATAATCAT
Statistics
Matches: 306, Mismatches: 11, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
147 133 0.43
148 52 0.17
149 88 0.29
150 33 0.11
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (148 bp):
TATTTGAAATATTTTAATATAATTTAATATAAAACTAAAAAATATTTTAACATAATTTAAAATAA
AATATTTTAATATATTTAATATAAAAATAATTATATTAAATTTTTATTAAATTATATATTTTTAT
TTTATTAAATTATAAAAA
Found at i:51418616 original size:23 final size:23
Alignment explanation
Indices: 51418590--51418637 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
51418580 TAAAAATAAT
51418590 TATATTAACT-TTTTATTAAATTA
1 TATATT-ACTATTTTATTAAATTA
**
51418613 TATATTTTTATTTTATTAAATTA
1 TATATTACTATTTTATTAAATTA
51418636 TA
1 TA
51418638 AAAATATTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 1 0.05
23 21 0.95
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (23 bp):
TATATTACTATTTTATTAAATTA
Found at i:51418642 original size:81 final size:81
Alignment explanation
Indices: 51418557--51418707 Score: 216
Period size: 81 Copynumber: 1.9 Consensus size: 81
51418547 AATTTAAAAT
* * ** * *
51418557 AAAATATTT-TAATATATTTAATATAAAAATAATTATATT-AACTTTTTATTAAATTATATATTT
1 AAAATATTTGAAATAT-TTTAATATAAAAATAATCATATTAAAAATGTCATTAAATTATAT-TTT
51418620 TTATTTTATTAAATTATA
64 TTATTTTATTAAATTATA
51418638 AAAATATTTGAAATATTTTAATATAAAAATAATCATATTAAAAATGTCATTAAATTATATTTTTT
1 AAAATATTTGAAATATTTTAATATAAAAATAATCATATTAAAAATGTCATTAAATTATATTTTTT
51418703 ATTTT
66 ATTTT
51418708 TTTATATTTA
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
81 41 0.66
82 21 0.34
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.50
Consensus pattern (81 bp):
AAAATATTTGAAATATTTTAATATAAAAATAATCATATTAAAAATGTCATTAAATTATATTTTTT
ATTTTATTAAATTATA
Found at i:51418936 original size:16 final size:17
Alignment explanation
Indices: 51418917--51418948 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
51418907 GATTTATTCT
51418917 ATTACAGCTCT-TTTTC
1 ATTACAGCTCTATTTTC
51418933 ATTACAGCTCTATTTT
1 ATTACAGCTCTATTTT
51418949 TTTTACAGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.22, C:0.22, G:0.06, T:0.50
Consensus pattern (17 bp):
ATTACAGCTCTATTTTC
Found at i:51419758 original size:7 final size:7
Alignment explanation
Indices: 51419746--51419792 Score: 94
Period size: 7 Copynumber: 6.7 Consensus size: 7
51419736 TAAATATGCT
51419746 CTAAACC
1 CTAAACC
51419753 CTAAACC
1 CTAAACC
51419760 CTAAACC
1 CTAAACC
51419767 CTAAACC
1 CTAAACC
51419774 CTAAACC
1 CTAAACC
51419781 CTAAACC
1 CTAAACC
51419788 CTAAA
1 CTAAA
51419793 TTAAAACTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 40 1.00
ACGTcount: A:0.45, C:0.40, G:0.00, T:0.15
Consensus pattern (7 bp):
CTAAACC
Found at i:51421832 original size:3 final size:3
Alignment explanation
Indices: 51421824--51421890 Score: 134
Period size: 3 Copynumber: 22.3 Consensus size: 3
51421814 ATTCCCCCAA
51421824 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
51421872 TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT T
51421891 TGCTGCTGTA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:51422188 original size:19 final size:19
Alignment explanation
Indices: 51422164--51422210 Score: 94
Period size: 19 Copynumber: 2.5 Consensus size: 19
51422154 GGGCTCACAT
51422164 AGCCGTGTGGCACTACTCA
1 AGCCGTGTGGCACTACTCA
51422183 AGCCGTGTGGCACTACTCA
1 AGCCGTGTGGCACTACTCA
51422202 AGCCGTGTG
1 AGCCGTGTG
51422211 ATGTAGGGAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (19 bp):
AGCCGTGTGGCACTACTCA
Found at i:51423477 original size:33 final size:33
Alignment explanation
Indices: 51423422--51423597 Score: 104
Period size: 33 Copynumber: 5.3 Consensus size: 33
51423412 TGGACCTGCC
** * * *
51423422 ATGGTCTTATGTTCATAGTGCCATAACCCAGTT
1 ATGGTCTTATCATCAGAATGCCATAGCCCAGTT
**
51423455 ATGGTCTTATCATCAGAATGCCATAGCCCAACT
1 ATGGTCTTATCATCAGAATGCCATAGCCCAGTT
* * * * * * ***
51423488 ATGGTCCTA-CATATAAACACTGTCATGGTCCAACC
1 ATGGTCTTATCAT-CAGA-A-TGCCATAGCCCAGTT
* * * *
51423523 ATGGTCTTA-CGTCCATAGTGCCATAACCCAGTT
1 ATGGTCTTATCAT-CAGAATGCCATAGCCCAGTT
* *
51423556 ATGGTCTTATCATTAGAATGCCATAGCTCAGTT
1 ATGGTCTTATCATCAGAATGCCATAGCCCAGTT
51423589 ATGGTCTTA
1 ATGGTCTTA
51423598 CATATATACT
Statistics
Matches: 106, Mismatches: 33, Indels: 8
0.72 0.22 0.05
Matches are distributed among these distances:
32 3 0.03
33 77 0.73
34 3 0.03
35 23 0.22
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (33 bp):
ATGGTCTTATCATCAGAATGCCATAGCCCAGTT
Found at i:51423547 original size:101 final size:100
Alignment explanation
Indices: 51423374--51423635 Score: 364
Period size: 101 Copynumber: 2.6 Consensus size: 100
51423364 TTTCTTATTG
* * * ** * *
51423374 TGCCATAGTCCAACTATGGTCTTACATAT-GCATTGTCATGGACCTGCCATGGTCTTATGTTCAT
1 TGCCATAGCCCAACTATGGTCTTACATATAACATTGTCATGGTCCAACCATGGTCTTACGTCCAT
51423438 AGTGCCATAACCCAGTTATGGTCTTATCATCAGAA
66 AGTGCCATAACCCAGTTATGGTCTTATCATCAGAA
* *
51423473 TGCCATAGCCCAACTATGGTCCTACATATAAACACTGTCATGGTCCAACCATGGTCTTACGTCCA
1 TGCCATAGCCCAACTATGGTCTTACATAT-AACATTGTCATGGTCCAACCATGGTCTTACGTCCA
*
51423538 TAGTGCCATAACCCAGTTATGGTCTTATCATTAGAA
65 TAGTGCCATAACCCAGTTATGGTCTTATCATCAGAA
* ** * *
51423574 TGCCATAGCTCAGTTATGGTCTTACATATATACTTTGCCATGGTCCAACCATGGTCTTACGT
1 TGCCATAGCCCAACTATGGTCTTACATATA-ACATTGTCATGGTCCAACCATGGTCTTACGT
51423636 TTGAATAATT
Statistics
Matches: 143, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
99 27 0.19
100 1 0.01
101 115 0.80
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (100 bp):
TGCCATAGCCCAACTATGGTCTTACATATAACATTGTCATGGTCCAACCATGGTCTTACGTCCAT
AGTGCCATAACCCAGTTATGGTCTTATCATCAGAA
Found at i:51424107 original size:38 final size:38
Alignment explanation
Indices: 51424056--51424131 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
51424046 AAGGTACAAG
51424056 GACAATTCGATAATTTTCTCTTTTCCTCGGTTTTCCAC
1 GACAATTCGATAATTTTCTCTTTTCCTCGGTTTTCCAC
51424094 GACAATTCGATAATTTTCTCTTTTCCTCGGTTTTCCAC
1 GACAATTCGATAATTTTCTCTTTTCCTCGGTTTTCCAC
51424132 TCATTCTTGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.18, C:0.26, G:0.11, T:0.45
Consensus pattern (38 bp):
GACAATTCGATAATTTTCTCTTTTCCTCGGTTTTCCAC
Found at i:51426566 original size:25 final size:27
Alignment explanation
Indices: 51426537--51426589 Score: 92
Period size: 25 Copynumber: 2.0 Consensus size: 27
51426527 ATTATGTATA
51426537 TATATTTTATGAA-ATTTTTAT-ATTT
1 TATATTTTATGAATATTTTTATAATTT
51426562 TATATTTTATGAATATTTTTATAATTT
1 TATATTTTATGAATATTTTTATAATTT
51426589 T
1 T
51426590 TAAATTATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 13 0.50
26 8 0.31
27 5 0.19
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (27 bp):
TATATTTTATGAATATTTTTATAATTT
Found at i:51426597 original size:26 final size:25
Alignment explanation
Indices: 51426543--51426597 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
51426533 TATATATATT
**
51426543 TTATGAAATTTTTATATTTTATATT
1 TTATGAAATTTTTATATTTTATAAA
51426568 TTATGAATATTTTTATAATTTT-TAAA
1 TTATGAA-ATTTTTAT-ATTTTATAAA
51426594 TTAT
1 TTAT
51426598 TTGTTGACGC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 7 0.27
26 14 0.54
27 5 0.19
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (25 bp):
TTATGAAATTTTTATATTTTATAAA
Found at i:51426598 original size:20 final size:20
Alignment explanation
Indices: 51426554--51426599 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 20
51426544 TATGAAATTT
*
51426554 TTATATTTTATATTTTATGAA
1 TTAT-TTTTATATTTTATAAA
51426575 -TATTTTTATAATTTT-TAAA
1 TTATTTTTAT-ATTTTATAAA
51426594 TTATTT
1 TTATTT
51426600 GTTGACGCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (20 bp):
TTATTTTTATATTTTATAAA
Found at i:51428685 original size:7 final size:7
Alignment explanation
Indices: 51428675--51428699 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
51428665 TTAGTAATTT
51428675 TTTTATA
1 TTTTATA
51428682 TTTTATA
1 TTTTATA
51428689 TTTTATA
1 TTTTATA
51428696 TTTT
1 TTTT
51428700 TCATATTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTATA
Found at i:51428705 original size:16 final size:15
Alignment explanation
Indices: 51428675--51428717 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 15
51428665 TTAGTAATTT
51428675 TTTTATA-TTTTATA
1 TTTTATATTTTTATA
51428689 TTTTATATTTTTCATA
1 TTTTATATTTTT-ATA
*
51428705 TTTAATTATTTTT
1 TTTTA-TATTTTT
51428718 TTAAATCTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 7 0.28
15 4 0.16
16 7 0.28
17 7 0.28
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (15 bp):
TTTTATATTTTTATA
Found at i:51428822 original size:25 final size:27
Alignment explanation
Indices: 51428776--51428833 Score: 84
Period size: 25 Copynumber: 2.2 Consensus size: 27
51428766 CATACGCATA
51428776 TTTATTTTTTAATATAACGTAATTATTT
1 TTTATTTTTT-ATATAACGTAATTATTT
*
51428804 TTTATTTTTT-TAT-ATGTAATTATTT
1 TTTATTTTTTATATAACGTAATTATTT
51428829 TTTAT
1 TTTAT
51428834 AATCTATACG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 16 0.55
26 3 0.10
28 10 0.34
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67
Consensus pattern (27 bp):
TTTATTTTTTATATAACGTAATTATTT
Found at i:51430334 original size:21 final size:22
Alignment explanation
Indices: 51430310--51430362 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 22
51430300 TTAATAATCA
*
51430310 AATTTAAGT-CAAAAATAAATT
1 AATTAAAGTACAAAAATAAATT
51430331 AATTAAAGTGACAAAAATAAATAAT
1 AATTAAAGT-ACAAAAATAAAT--T
51430356 AATTAAA
1 AATTAAA
51430363 TAGACAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
21 8 0.30
23 11 0.41
25 8 0.30
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.28
Consensus pattern (22 bp):
AATTAAAGTACAAAAATAAATT
Found at i:51430349 original size:23 final size:24
Alignment explanation
Indices: 51430319--51430371 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 24
51430309 AAATTTAAGT
51430319 CAAAAATAAAT-TAATTAAAGT-GA
1 CAAAAATAAATATAATTAAA-TAGA
51430342 CAAAAATAAATAATAATTAAATAGA
1 CAAAAATAAAT-ATAATTAAATAGA
51430367 CAAAA
1 CAAAA
51430372 TTTATCATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
23 11 0.41
24 1 0.04
25 15 0.56
ACGTcount: A:0.66, C:0.06, G:0.06, T:0.23
Consensus pattern (24 bp):
CAAAAATAAATATAATTAAATAGA
Found at i:51430844 original size:24 final size:24
Alignment explanation
Indices: 51430815--51430866 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
51430805 AATTCATGGG
*
51430815 ACAGTCCCCTCCAATTTAATCCTA
1 ACAGTCCCCTCCAATTTAATCCGA
51430839 ACAGTCCCCTCCAATTTAATCCGA
1 ACAGTCCCCTCCAATTTAATCCGA
51430863 ACAG
1 ACAG
51430867 ATTCCAGGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.31, C:0.37, G:0.08, T:0.25
Consensus pattern (24 bp):
ACAGTCCCCTCCAATTTAATCCGA
Found at i:51434454 original size:25 final size:24
Alignment explanation
Indices: 51434416--51434462 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 24
51434406 TTAATTTTCT
*
51434416 CAAATTGTATACTTTATTTTACATCC
1 CAAATTGTACAC-TTA-TTTACATCC
51434442 CAAA-TGTACACTTATTTACAT
1 CAAATTGTACACTTATTTACAT
51434463 TATATGAAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 7 0.35
24 3 0.15
25 6 0.30
26 4 0.20
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.43
Consensus pattern (24 bp):
CAAATTGTACACTTATTTACATCC
Found at i:51439468 original size:28 final size:29
Alignment explanation
Indices: 51439419--51439473 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
51439409 TAAATACACT
* *
51439419 TCAAGATTCAAGAGAGAGATATCCAAACA
1 TCAAGATTCAAGAGAAAAATATCCAAACA
*
51439448 TCAAGA-TCAAGAGAAAAATATTCAAA
1 TCAAGATTCAAGAGAAAAATATCCAAA
51439474 TATTTTTTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 17 0.74
29 6 0.26
ACGTcount: A:0.53, C:0.15, G:0.15, T:0.18
Consensus pattern (29 bp):
TCAAGATTCAAGAGAAAAATATCCAAACA
Found at i:51440851 original size:21 final size:20
Alignment explanation
Indices: 51440805--51440891 Score: 66
Period size: 21 Copynumber: 4.1 Consensus size: 20
51440795 CCTGATCAGT
*
51440805 ATACGACACATAAGTGCCTG
1 ATACGACACAGAAGTGCCTG
* * *
51440825 AAACGACACACGAGGTGTCTG
1 ATACGACACA-GAAGTGCCTG
* *
51440846 ATACGACAAATAAAGTGCCTGAG
1 ATACGACACA-GAAGTGCCT--G
*
51440869 ATACGACACATAAAGTGCCTG
1 ATACGACACA-GAAGTGCCTG
51440890 AT
1 AT
51440892 CGGCAAAGCC
Statistics
Matches: 53, Mismatches: 11, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
20 9 0.17
21 24 0.45
23 20 0.38
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (20 bp):
ATACGACACAGAAGTGCCTG
Found at i:51440874 original size:23 final size:23
Alignment explanation
Indices: 51440845--51440890 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
51440835 CGAGGTGTCT
51440845 GATACGACAAATAAAGTGCCTGA
1 GATACGACAAATAAAGTGCCTGA
*
51440868 GATACGACACATAAAGTGCCTGA
1 GATACGACAAATAAAGTGCCTGA
51440891 TCGGCAAAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.41, C:0.20, G:0.22, T:0.17
Consensus pattern (23 bp):
GATACGACAAATAAAGTGCCTGA
Found at i:51440891 original size:44 final size:41
Alignment explanation
Indices: 51440805--51440891 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 41
51440795 CCTGATCAGT
* * * *
51440805 ATACGACACATAAGTGCCTGAAACGACACACGAGGTGTCTG
1 ATACGACAAATAAGTGCCTGAAACGACACACAAAGTGCCTG
*
51440846 ATACGACAAATAAAGTGCCTGAGATACGACACATAAAGTGCCTG
1 ATACGACAAAT-AAGTGCCTGA-A-ACGACACACAAAGTGCCTG
51440890 AT
1 AT
51440892 CGGCAAAGCC
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
41 10 0.26
42 10 0.26
43 1 0.03
44 17 0.45
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (41 bp):
ATACGACAAATAAGTGCCTGAAACGACACACAAAGTGCCTG
Found at i:51441516 original size:3 final size:3
Alignment explanation
Indices: 51441508--51441549 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
51441498 ACATTAATTT
51441508 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
51441550 GAATTTCTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:51442192 original size:5 final size:5
Alignment explanation
Indices: 51442182--51442253 Score: 57
Period size: 5 Copynumber: 15.2 Consensus size: 5
51442172 TTTTTAACTT
* *
51442182 ATATA ATATA ATACA ATATA ATA-A A-ATA AAATA ATAT- ATA-A TATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA -ATATA
*
51442229 ATAT- ATAATA AAATA ATAT- ATATA A
1 ATATA AT-ATA ATATA ATATA ATATA A
51442254 AACATAAAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 16
0.72 0.07 0.21
Matches are distributed among these distances:
3 1 0.02
4 13 0.24
5 38 0.70
6 2 0.04
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.35
Consensus pattern (5 bp):
ATATA
Found at i:51442202 original size:15 final size:14
Alignment explanation
Indices: 51442182--51442254 Score: 71
Period size: 15 Copynumber: 5.1 Consensus size: 14
51442172 TTTTTAACTT
51442182 ATATAATATAATACA
1 ATATAATATAATA-A
*
51442197 ATATAATAAAATAA
1 ATATAATATAATAA
51442211 A-ATAATAT-ATAA
1 ATATAATATAATAA
51442223 TATATAATATATAATAA
1 -ATAT-A-ATATAATAA
51442240 A-ATAATATATATAA
1 ATATAATATA-ATAA
51442254 A
1 A
51442255 ACATAAAAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
12 4 0.08
13 12 0.24
14 10 0.20
15 15 0.30
16 5 0.10
17 4 0.08
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.34
Consensus pattern (14 bp):
ATATAATATAATAA
Done.