Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62769430
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1067035 characters in sequence are not A, C, G, or T
File 180 of 206
Found at i:55028800 original size:132 final size:132
Alignment explanation
Indices: 55028293--55028744 Score: 699
Period size: 132 Copynumber: 3.4 Consensus size: 132
55028283 TCTTCGATAG
* * * * * *
55028293 ATTCCACTGCCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
** * **
55028358 GTAAAATCTACCATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAAT-ATTCAA
66 GTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCA-TCAA
55028422 TCT
130 TCT
* * *
55028425 ATTCCACTGTTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
*
55028490 GTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAAT
66 GTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAAT
55028555 CT
131 CT
* * * *
55028557 ATTCCACTGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
55028622 GTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAAT
66 GTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAAT
*
55028687 AT
131 CT
*
55028689 ATTCCACTGCTGCCCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAAC
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAAC
55028745 TTTAGAGAGA
Statistics
Matches: 290, Mismatches: 29, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
132 290 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (132 bp):
ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
GTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAAT
CT
Found at i:55028844 original size:793 final size:793
Alignment explanation
Indices: 55027237--55029037 Score: 2150
Period size: 793 Copynumber: 2.3 Consensus size: 793
55027227 CTTAATCCAC
*
55027237 TCCATTGCAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGA
1 TCCACTGCAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGA
55027302 TAAGAC-TTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGAT
66 TAAGACTTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGAT
*
55027366 CTATTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGA
131 CTACTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGA
*
55027431 ATAGAAGATCTGCTTTCTTCCATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCG
196 ATAGAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCG
55027496 ATAGATTACACTGCCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAG
261 ATAGATTACACTGCCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAG
55027561 AGAGGTAAAATCTACCATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATT
326 AGAGGTAAAATCTACCATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATT
55027626 CAATCTATTCCACTGTTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTC
391 CAATCTATTCCACTGTTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTC
*
55027691 AGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTATTGCCTAGGGAGATAAGATCTGTAATC
456 AGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATC
55027756 TTCAATCTATTCCACTGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACC
521 TTCAATCTATTCCACTGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACC
55027821 TCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAA
586 TCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAA
************************************
55027886 TCATCAATATATTCCACTGCTGCCCAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
651 TCATCAATATATTCCACTGCTGCCCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAA
*****************************************************************
55027951 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
716 CTTTAGAGAGATGAGATCTGTGGTCTTAATCCACTCCATTGCAACTTCAAGGAGATAGGATTGGT
*********
55028016 NNNNNNNNNCTGT
781 TACTTCTGTCTGT
*
55028029 TCCATTGCAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGA
1 TCCACTGCAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGA
55028094 TAAGACTTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGAT
66 TAAGACTTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGAT
55028159 CTACTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGA
131 CTACTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGA
55028224 ATAGAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCG
196 ATAGAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCG
*
55028289 ATAGATTCCACTGCCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAG
261 ATAGATTACACTGCCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAG
55028354 AGAGGTAAAATCTACCATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATT
326 AGAGGTAAAATCTACCATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATT
55028419 CAATCTATTCCACTGTTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTC
391 CAATCTATTCCACTGTTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTC
55028484 AGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATC
456 AGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATC
55028549 TTCAATCTATTCCACTGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACC
521 TTCAATCTATTCCACTGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACC
55028614 TCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAA
586 TCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAA
55028679 TCATCAATATATTCCACTGCTGCCCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAA
651 TCATCAATATATTCCACTGCTGCCCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAA
55028744 CTTTAGAGAGATGAGATCTGTGGTCTTAATCCACTCCATTGCAACTTCAAGGAGATAGGATTGGT
716 CTTTAGAGAGATGAGATCTGTGGTCTTAATCCACTCCATTGCAACTTCAAGGAGATAGGATTGGT
55028809 TACTTCTGTCTGT
781 TACTTCTGTCTGT
* * * * * * * * *
55028822 TCCACTGCTATTTTAGGGAGATAAGACTT--ATATCTTC-GATCTACTTCGCCAC--C-AGTAT-
1 TCCACTGCAACTTCAAGGAGATAGGA-TTGGTTA-CTTCTG-TCT-GTT--CCACTGCTATTTTA
* ** * * ***
55028880 GGGAAGACAAGA-TCTGCTCTCTTTGATCTACTTCATGCCA--A-TACATGAAGACAAGATCTGC
60 GGG-AGATAAGACT-TTATATCTTCGATCTACTTC--GCCACCAGTATGGGAAGACAAGATCTGC
* * * * * * *
55028941 TTTCTTCGATCTACTCCACGCCAATACATGAATAGAAGATCTGCTTTCTTCGATCTACTTCACGC
121 TCTCTTTGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGC
* *
55029006 CAATACATGAAGACAAGATCTGCTTTCTTCGA
186 CAATACATGAATAGAAGATCTGCTTTCTTCGA
55029038 CAGATTCCAC
Statistics
Matches: 857, Mismatches: 141, Indels: 22
0.84 0.14 0.02
Matches are distributed among these distances:
792 183 0.21
793 661 0.77
794 5 0.01
795 4 0.00
796 4 0.00
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.28
Consensus pattern (793 bp):
TCCACTGCAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGA
TAAGACTTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGAT
CTACTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGA
ATAGAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCG
ATAGATTACACTGCCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAG
AGAGGTAAAATCTACCATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATT
CAATCTATTCCACTGTTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTC
AGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATC
TTCAATCTATTCCACTGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACC
TCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAA
TCATCAATATATTCCACTGCTGCCCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAA
CTTTAGAGAGATGAGATCTGTGGTCTTAATCCACTCCATTGCAACTTCAAGGAGATAGGATTGGT
TACTTCTGTCTGT
Found at i:55028935 original size:44 final size:44
Alignment explanation
Indices: 55028882--55029037 Score: 258
Period size: 44 Copynumber: 3.5 Consensus size: 44
55028872 ACCAGTATGG
* * *
55028882 GAAGACAAGATCTGCTCTCTTTGATCTACTTCATGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
*
55028926 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
* *
55028970 GAATAGAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
55029014 GAAGACAAGATCTGCTTTCTTCGA
1 GAAGACAAGATCTGCTTTCTTCGA
55029038 CAGATTCCAC
Statistics
Matches: 103, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 103 1.00
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (44 bp):
GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
Found at i:55029045 original size:748 final size:749
Alignment explanation
Indices: 55028029--55029465 Score: 2831
Period size: 748 Copynumber: 1.9 Consensus size: 749
55028019 NNNNNNCTGT
55028029 TCCATTGCAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGA
1 TCCATTGCAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGA
55028094 TAAGACTTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGAT
66 TAAGACTTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGAT
55028159 CTACTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGA
131 CTACTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGA
55028224 ATAGAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCG
196 ATAGAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCG
*
55028289 ATAGATTCCACTGCCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAG
261 ACAGATTCCACTGCCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAG
55028354 AGAGGTAAAATCTACCATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATT
326 AGAGGTAAAATCTACCATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATT
55028419 CAATCTATTCCACTGTTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTC
391 CAATCTATTCCACTGTTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTC
55028484 AGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATC
456 AGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATC
*
55028549 TTCAATCTATTCCACTGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACC
521 TTCAACCTATTCCACTGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACC
55028614 TCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAA
586 TCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAA
55028679 TCATCAATATATTCCACTGCTGCCCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAA
651 TCATCAATATATTCCACTGCTGCCCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAA
55028744 CTTTAGAGAGATGAGATCTGTGGTCTTAATCCAC
716 CTTTAGAGAGATGAGATCTGTGGTCTTAATCCAC
55028778 TCCATTGCAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGA
1 TCCATTGCAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGA
55028843 TAAGAC-TTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGAT
66 TAAGACTTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGAT
55028907 CTACTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGA
131 CTACTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGA
55028972 ATAGAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCG
196 ATAGAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCG
55029037 ACAGATTCCACTGCCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAG
261 ACAGATTCCACTGCCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAG
55029102 AGAGGTAAAATCTACCATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATT
326 AGAGGTAAAATCTACCATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATT
55029167 CAATCTATTCCACTGTTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTC
391 CAATCTATTCCACTGTTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTC
*
55029232 AGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTATTGCCTAGGGAGATAAGATCTGTAATC
456 AGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATC
*
55029297 TTCACCCTATTCCACTGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACC
521 TTCAACCTATTCCACTGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACC
55029362 TCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAA
586 TCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAA
55029427 TCATCAATATATTCCACTGCTGCCCAGGGAGATAGAATT
651 TCATCAATATATTCCACTGCTGCCCAGGGAGATAGAATT
55029466 GTGGTCTTAA
Statistics
Matches: 684, Mismatches: 4, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
748 613 0.90
749 71 0.10
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (749 bp):
TCCATTGCAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGA
TAAGACTTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGAT
CTACTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGA
ATAGAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCG
ACAGATTCCACTGCCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAG
AGAGGTAAAATCTACCATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATT
CAATCTATTCCACTGTTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTC
AGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATC
TTCAACCTATTCCACTGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACC
TCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAA
TCATCAATATATTCCACTGCTGCCCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAA
CTTTAGAGAGATGAGATCTGTGGTCTTAATCCAC
Found at i:55029131 original size:132 final size:132
Alignment explanation
Indices: 55028987--55029465 Score: 366
Period size: 132 Copynumber: 3.6 Consensus size: 132
55028977 AGATCTGCTT
* * * * * *
55028987 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT-TTCTTCGA-CAGATTCCACTG
1 TCTTCGATCTACTCCACGACAATACAGGAAGACAAGATCTG-TAATATTCAATC-GATTCCACTG
*
55029050 CCGAC-C-AGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAAT
64 CCG-CTCAAG-GAGATAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAAT
*
55029113 CTACCA
127 CCACCA
* * ** ** * * * **
55029119 TTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGTT
1 TCTTCGATCTACTCCACGACAATACAGGAAGACAAGATCTGTAATATTCAATCGATTCCACTGCC
* * *
55029184 GCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGC
66 GCTCAAGGAGATAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCCAC
55029249 CA
131 CA
* * * * * * ** *
55029251 TCTTCGATCTACTCCAC--TATTGCCTAGGGAGATAAGATCTGTAATCTTCACCCTATTCCACTG
1 TCTTCGATCTACTCCACGACAAT-AC-AGGAAGACAAGATCTGTAATATTCAATCGATTCCACTG
* * * * * * *
55029314 CTGC-CTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACCTCAGGGAGGTAAAATC
64 CCGCTC-AAGGAGATAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATC
*
55029378 CGCCA
128 CACCA
* * * * **
55029383 TCTTCGATCTACTCCACTAC--TGCCTAGGGAGATAAGATCTGTAATCA-TCAATATATTCCACT
1 TCTTCGATCTACTCCACGACAAT-AC-AGGAAGACAAGATCTGTAAT-ATTCAATCGATTCCACT
* * *
55029445 GCTGCCCAGGGAGATAGAATT
63 GCCGCTCAAGGAGATAGAATT
55029466 GTGGTCTTAA
Statistics
Matches: 295, Mismatches: 41, Indels: 22
0.82 0.11 0.06
Matches are distributed among these distances:
130 1 0.00
131 3 0.01
132 287 0.97
133 4 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (132 bp):
TCTTCGATCTACTCCACGACAATACAGGAAGACAAGATCTGTAATATTCAATCGATTCCACTGCC
GCTCAAGGAGATAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCCAC
CA
Found at i:55029298 original size:44 final size:44
Alignment explanation
Indices: 55029125--55029460 Score: 168
Period size: 44 Copynumber: 7.6 Consensus size: 44
55029115 ACCATTTTCG
* ** *
55029125 ATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCA
1 ATCTACTCCACTGCTGCCTAGGGAGATAAGATCTGTAATCTTCA
* * * * *
55029169 ATCTATTCCACTGTTG-CTCAAGGAGAT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTGCTGCCT-AGGGAGATAAGATCTGTAAT--CTTCA
* * * * * ** *
55029212 ATGTACTCCACTG-TAACCTCAGGGAGGTAAAATCCGCCATCTTCG
1 ATCTACTCCACTGCT-GCCT-AGGGAGATAAGATCTGTAATCTTCA
**
55029257 ATCTACTCCACTATTGCCTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTGCTGCCTAGGGAGATAAGATCTGTAATCTTCA
** * * * *
55029301 CCCTATTCCACTGCTGCCTAGGGAGAT-AGA-AT-TACTGGCCTCA
1 ATCTACTCCACTGCTGCCTAGGGAGATAAGATCTGTAAT--CTTCA
* * * * * * * ** *
55029344 ATGTACTTCACCG-TAACCTCAGGGAGGTAAAATCCGCCATCTTCG
1 ATCTACTCCACTGCT-GCCT-AGGGAGATAAGATCTGTAATCTTCA
* *
55029389 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCA
1 ATCTACTCCACTGCTGCCTAGGGAGATAAGATCTGTAATCTTCA
* * *
55029433 ATATATTCCACTGCTGCCCAGGGAGATA
1 ATCTACTCCACTGCTGCCTAGGGAGATA
55029461 GAATTGTGGT
Statistics
Matches: 206, Mismatches: 69, Indels: 34
0.67 0.22 0.11
Matches are distributed among these distances:
41 6 0.03
42 4 0.02
43 36 0.17
44 119 0.58
45 37 0.18
46 2 0.01
47 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (44 bp):
ATCTACTCCACTGCTGCCTAGGGAGATAAGATCTGTAATCTTCA
Found at i:55029634 original size:44 final size:44
Alignment explanation
Indices: 55029585--55029741 Score: 242
Period size: 44 Copynumber: 3.6 Consensus size: 44
55029575 ACCAGTATGG
* * * *
55029585 GAAGACAAGATCTGCTCTCTTTGATCTATTTCATGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
*
55029629 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
* * *
55029673 GAATAGAAGATCTGCTTTCTTCGATCTACTTCACACCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
55029717 GAAGACAAGATCTGCTTTCTTCGAT
1 GAAGACAAGATCTGCTTTCTTCGAT
55029742 AGATTCCACT
Statistics
Matches: 102, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 102 1.00
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (44 bp):
GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
Found at i:55030144 original size:44 final size:44
Alignment explanation
Indices: 55030083--55030293 Score: 155
Period size: 44 Copynumber: 4.8 Consensus size: 44
55030073 TAAATCCGCC
* *
55030083 ATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTA
1 ATCTTCAATCTATTCCACTACTGCCTAGGGAGATAAGATCTGTA
* *
55030127 ATCTTCAATCTATTCCACTGCTGCCTAGGGAGAT-AGA-AT-TA
1 ATCTTCAATCTATTCCACTACTGCCTAGGGAGATAAGATCTGTA
* * * * * * * **
55030168 CTGGCCTCAATGTACTT-CAC--CGTAACCTCAGGGAGGTAAAATCCGCC
1 AT--CTTCAATCTA-TTCCACTAC-T-GCCT-AGGGAGATAAGATCTGTA
* *
55030215 ATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTA
1 ATCTTCAATCTATTCCACTACTGCCTAGGGAGATAAGATCTGTA
* * * *
55030259 ATCATCAATATATTCCACTGCTGCCCAGGGAGATA
1 ATCTTCAATCTATTCCACTACTGCCTAGGGAGATA
55030294 GAATTATTGG
Statistics
Matches: 124, Mismatches: 31, Indels: 24
0.69 0.17 0.13
Matches are distributed among these distances:
41 4 0.03
42 2 0.02
43 17 0.14
44 83 0.67
45 15 0.12
46 1 0.01
47 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.27
Consensus pattern (44 bp):
ATCTTCAATCTATTCCACTACTGCCTAGGGAGATAAGATCTGTA
Found at i:55030311 original size:132 final size:131
Alignment explanation
Indices: 55030039--55030325 Score: 495
Period size: 132 Copynumber: 2.2 Consensus size: 131
55030029 NNNNNNNNNN
55030039 TGGCTTCAATGTACTCCACTGT-ACCTCAGGGAGGTAAATCCGCCATCTTCGATCTACTCCACTA
1 TGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAATCCGCCATCTTCGATCTACTCCACTA
* * *
55030103 CTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCTAGGGAGATAGAATTA
66 CTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACTGCTGCCCAGGGAGATAGAATTA
55030168 C
131 C
* * *
55030169 TGGCCTCAATGTACTTCACCGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACT
1 TGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGT-AAATCCGCCATCTTCGATCTACTCCACT
55030234 ACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACTGCTGCCCAGGGAGATAGAATT
65 ACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACTGCTGCCCAGGGAGATAGAATT
*
55030299 AT
130 AC
55030301 TGGCTTCAATGTACTCCACTGTAAC
1 TGGCTTCAATGTACTCCACTGTAAC
55030326 TTTAGAGAGA
Statistics
Matches: 145, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
130 19 0.13
131 13 0.09
132 113 0.78
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (131 bp):
TGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAATCCGCCATCTTCGATCTACTCCACTA
CTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACTGCTGCCCAGGGAGATAGAATTA
C
Found at i:55030516 original size:44 final size:44
Alignment explanation
Indices: 55030463--55030619 Score: 260
Period size: 44 Copynumber: 3.6 Consensus size: 44
55030453 ACCAGTATGG
* * *
55030463 GAAGACAAGATCTGCTCTCTTTGATCTACTTCATGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
*
55030507 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
* *
55030551 GAATAGAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
55030595 GAAGACAAGATCTGCTTTCTTCGAT
1 GAAGACAAGATCTGCTTTCTTCGAT
55030620 AGATTCCACT
Statistics
Matches: 104, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 104 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (44 bp):
GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
Found at i:55030712 original size:132 final size:132
Alignment explanation
Indices: 55030568--55030848 Score: 300
Period size: 132 Copynumber: 2.1 Consensus size: 132
55030558 AGATCTGCTT
* * * * *
55030568 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT-TTCTTCG-ATAGATTCCACTG
1 TCTTCGATCTACTCCACGACAATACAGGAAGACAAGATCTG-TAATATT-GAATAGATTCCACTG
*
55030631 CCGAC-C-AGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAAT
64 CCG-CTCAAG-GAGATAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAAT
*
55030694 CTACCA
127 CCACCA
* * ** ** * * ** **
55030700 TTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTGAATCTATTCCACTGTT
1 TCTTCGATCTACTCCACGACAATACAGGAAGACAAGATCTGTAATATTGAATAGATTCCACTGCC
* * *
55030765 GCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGC
66 GCTCAAGGAGATAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCCAC
55030830 CA
131 CA
55030832 TCTTCGATCTACTCCAC
1 TCTTCGATCTACTCCAC
55030849 TACTGCCTAG
Statistics
Matches: 122, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
131 3 0.02
132 117 0.96
133 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.30
Consensus pattern (132 bp):
TCTTCGATCTACTCCACGACAATACAGGAAGACAAGATCTGTAATATTGAATAGATTCCACTGCC
GCTCAAGGAGATAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCCAC
CA
Found at i:55030849 original size:132 final size:130
Alignment explanation
Indices: 55030644--55030948 Score: 430
Period size: 132 Copynumber: 2.3 Consensus size: 130
55030634 ACCAGAGAGT
* * *
55030644 TAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTACCATTTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAAAATCCACCATCTTCGATC
** * * * *
55030709 TACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTGAATCTATTCCACTGTTGCTCAAGGA
66 TACTCCACTACTGCCTAGGGAGATAAGATCTGTAATATTCAACCTA-TCCACTGCTAC-CAAGGA
55030774 GA
129 GA
* *
55030776 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATC
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAAAATCCACCATCTTCGATC
* * **
55030841 TACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCACCCTATCCACTGCTACCGGGGAGA
66 TACTCCACTACTGCCTAGGGAGATAAGATCTGTAATATTCAACCTATCCACTGCTACCAAGGAGA
* * *
55030906 TAGAATTATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAG
1 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAGAG
55030949 ATGAGATCTG
Statistics
Matches: 154, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
130 45 0.29
131 9 0.06
132 100 0.65
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (130 bp):
TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAAAATCCACCATCTTCGATC
TACTCCACTACTGCCTAGGGAGATAAGATCTGTAATATTCAACCTATCCACTGCTACCAAGGAGA
Found at i:55030879 original size:44 final size:45
Alignment explanation
Indices: 55030702--55030880 Score: 104
Period size: 44 Copynumber: 4.1 Consensus size: 45
55030692 ATCTACCATT
* * *
55030702 TTCGATCTACTCCACTACTG-TTTAGGGAGATAAGATCTGTAATA
1 TTCGATCTACTCCACTACTGCCTCAGGGAGATAAGATCTGTAATC
* ** * * *
55030746 TT-GAATCTATTCCACTGTTG-CTCAAGGAGAT-AGA-AT-TACTGGC
1 TTCG-ATCTACTCCACTACTGCCTCAGGGAGATAAGATCTGTAAT--C
* * * * * * * **
55030789 TTCAATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCCGCCATC
1 TTCGATCTACTCCACTACT-GCCTCAGGGAGATAAGATCTGTAATC
55030834 TTCGATCTACTCCACTACTGCCT-AGGGAGATAAGATCTGTAATC
1 TTCGATCTACTCCACTACTGCCTCAGGGAGATAAGATCTGTAATC
55030878 TTC
1 TTC
55030881 ACCCTATCCA
Statistics
Matches: 94, Mismatches: 31, Indels: 20
0.65 0.21 0.14
Matches are distributed among these distances:
41 3 0.03
42 2 0.02
43 16 0.17
44 51 0.54
45 20 0.21
46 1 0.01
47 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (45 bp):
TTCGATCTACTCCACTACTGCCTCAGGGAGATAAGATCTGTAATC
Found at i:55031126 original size:44 final size:44
Alignment explanation
Indices: 55031077--55031233 Score: 251
Period size: 44 Copynumber: 3.6 Consensus size: 44
55031067 ACCAGTATGG
* * * *
55031077 GAAGACAAGATCTGCTCTCTTTGATCTATTTCATGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
*
55031121 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
* *
55031165 GAATAGAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
55031209 GAAGACAAGATCTGCTTTCTTCGAT
1 GAAGACAAGATCTGCTTTCTTCGAT
55031234 AGATTACACT
Statistics
Matches: 103, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 103 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (44 bp):
GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
Found at i:55031206 original size:614 final size:615
Alignment explanation
Indices: 55030039--55031555 Score: 2745
Period size: 614 Copynumber: 2.5 Consensus size: 615
55030029 NNNNNNNNNN
* * ** *
55030039 TGGCTTCAATGTACTCCACTGT-ACCTCAGGGAGGT-AAATCCGCCATCTTCGATCTACTCCACT
1 TGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTACCATTTTCGATCTACTCCACT
** * * *
55030102 ACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGC-CTAGGGAGATAGAAT
66 ACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGTTGCTC-AAGGAGATAGAAT
* * *
55030166 TACTGGCCTCAATGTACTTCACCGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCC
130 TACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCC
* *** *
55030231 ACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACTGCTGCCCAGGGAGATAGA
195 ACTACTGCCTAGGGAGATAAGATCTGTAATCTTCACCCTATTCCACTGCT-ACCAGGGAGATAGA
55030296 ATTATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTCTTAATCCACTC
259 ATTATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTCTTAATCCACTC
55030361 CATTGCAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGATA
324 CATTGCAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGATA
55030426 AGACTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGATCTA
389 AGACTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGATCTA
55030491 CTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAATA
454 CTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAATA
55030556 GAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATA
519 GAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATA
*
55030621 GATTCCACTGCCGACCAGAGAGTTAGAATTAC
584 GATTACACTGCCGACCAGAGAGTTAGAATTAC
55030653 TGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTACCATTTTCGATCTACTCCACT
1 TGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTACCATTTTCGATCTACTCCACT
*
55030718 ACTGTTTAGGGAGATAAGATCTGTAATATTGAATCTATTCCACTGTTGCTCAAGGAGATAGAATT
66 ACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGTTGCTCAAGGAGATAGAATT
55030783 ACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCA
131 ACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCA
*
55030848 CTACTGCCTAGGGAGATAAGATCTGTAATCTTCACCCTA-TCCACTGCTACCGGGGAGATAGAAT
196 CTACTGCCTAGGGAGATAAGATCTGTAATCTTCACCCTATTCCACTGCTACCAGGGAGATAGAAT
55030912 TATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTCTTAATCCACTCCA
261 TATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTCTTAATCCACTCCA
55030977 TTGCAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGATAAG
326 TTGCAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGATAAG
*
55031042 ACTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGATCTATT
391 ACTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGATCTACT
55031107 TCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAATAGA
456 TCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAATAGA
55031172 AGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATAGA
521 AGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATAGA
55031237 TTACACTGCCGACCAGAGAGTTAGAATTAC
586 TTACACTGCCGACCAGAGAGTTAGAATTAC
55031267 TGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTACCATTTTCGATCTACTCCACT
1 TGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTACCATTTTCGATCTACTCCACT
55031332 ACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGTTGCTCAAGGAGATAGAATT
66 ACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGTTGCTCAAGGAGATAGAATT
*
55031397 ACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATACGCCATCTTCGATCTACTCCA
131 ACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCA
*
55031462 CTACTGCCTAGGGAGATAAGATCTGTAATCTTCACCCTATTCCACTGCTGCCTAGGGAGATAGAA
196 CTACTGCCTAGGGAGATAAGATCTGTAATCTTCACCCTATTCCACTGCTACC-AGGGAGATAGAA
* *
55031527 TTACTGGCCTCAATGTACTCCACTGTAAC
260 TTATTGGCTTCAATGTACTCCACTGTAAC
55031556 CTCAGGGAGG
Statistics
Matches: 870, Mismatches: 28, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
614 620 0.71
615 32 0.04
616 217 0.25
617 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (615 bp):
TGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTACCATTTTCGATCTACTCCACT
ACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGTTGCTCAAGGAGATAGAATT
ACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCA
CTACTGCCTAGGGAGATAAGATCTGTAATCTTCACCCTATTCCACTGCTACCAGGGAGATAGAAT
TATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTCTTAATCCACTCCA
TTGCAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGATAAG
ACTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGATCTACT
TCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAATAGA
AGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATAGA
TTACACTGCCGACCAGAGAGTTAGAATTAC
Found at i:55031493 original size:44 final size:44
Alignment explanation
Indices: 55031320--55031787 Score: 192
Period size: 44 Copynumber: 10.6 Consensus size: 44
55031310 ACCATTTTCG
** *
55031320 ATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
* ** * * *
55031364 ATCTATTCCACTGTTG-CTCAAGGAGAT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTACTGCCT-AGGGAGATAAGATCTGTAAT--CTTCA
* * * * * ** *
55031407 ATGTACTCCACT-GTAACCTCAGGGAGGTAAAATAC-GCCATCTTCG
1 ATCTACTCCACTACT-GCCT-AGGGAGATAAGAT-CTGTAATCTTCA
55031452 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
** * * * * *
55031496 CCCTATTCCACTGCTGCCTAGGGAGAT-AGA-AT-TACTGGCCTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAAT--CTTCA
* * * * * *** **
55031539 ATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCCACCAA-CTTTG
1 ATCTACTCCACTACT-GCCT-AGGGAGATAAGAT-CTGTAATCTTCA
* * *
55031584 ATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
* ** * * *
55031628 ATCTATTCCACTGTTGCCCAGGGAGAT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAAT--CTTCA
* * * * * ** *
55031671 ATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCTGCCATCTTCG
1 ATCTACTCCACTACT-GCCT-AGGGAGATAAGATCTGTAATCTTCA
*
55031716 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
* * * *
55031760 ATATATTCCACTGCTGCCCAGGGAGATA
1 ATCTACTCCACTACTGCCTAGGGAGATA
55031788 GAAGTATTGG
Statistics
Matches: 300, Mismatches: 95, Indels: 58
0.66 0.21 0.13
Matches are distributed among these distances:
41 9 0.03
42 6 0.02
43 60 0.20
44 161 0.54
45 57 0.19
46 4 0.01
47 2 0.01
48 1 0.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (44 bp):
ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
Found at i:55031899 original size:44 final size:44
Alignment explanation
Indices: 55031807--55031909 Score: 170
Period size: 44 Copynumber: 2.3 Consensus size: 44
55031797 GCTTCAATGT
**
55031807 ACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTCTTAATGT
1 ACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTCTTAATCC
55031851 ACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTCTTAATCC
1 ACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTCTTAATCC
* *
55031895 ACTCCATTGCAACTT
1 ACTCCACTGTAACTT
55031910 CAAGGAGATA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 55 1.00
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.33
Consensus pattern (44 bp):
ACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTCTTAATCC
Found at i:55032050 original size:44 final size:44
Alignment explanation
Indices: 55032001--55032157 Score: 251
Period size: 44 Copynumber: 3.6 Consensus size: 44
55031991 ACCAGTATGG
* * * *
55032001 GAAGACAAGATCTGCTCTCTTTGATCTATTTCATGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
*
55032045 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
* *
55032089 GAATAGAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
55032133 GAAGACAAGATCTGCTTTCTTCGAT
1 GAAGACAAGATCTGCTTTCTTCGAT
55032158 AGATTCCACT
Statistics
Matches: 103, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 103 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (44 bp):
GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
Found at i:55032417 original size:44 final size:44
Alignment explanation
Indices: 55032244--55032579 Score: 188
Period size: 44 Copynumber: 7.6 Consensus size: 44
55032234 ACCATTTTCG
** *
55032244 ATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
* ** * * *
55032288 ATCTATTCCACTGTTG-CTCAAGGAGAT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTACTGCCT-AGGGAGATAAGATCTGTAAT--CTTCA
* * * * * * ** *
55032331 ATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCCGCCATCTTCG
1 ATCTACTCCACTACT-GCCT-AGGGAGATAAGATCTGTAATCTTCA
55032376 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
* * * * *
55032420 ATCTATTCCACTGCTGCCTAGGGAGAT-AGA-AT-TACTGGCCTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAAT--CTTCA
* * * * * ** *
55032463 ATGTACTTCAC--CGTAACCTCAGGGAGGTAAAATCTGCCATCTTCG
1 ATCTACTCCACTAC-T-GCCT-AGGGAGATAAGATCTGTAATCTTCA
*
55032508 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
* * * *
55032552 ATATATTCCACTGCTGCCCAGGGAGATA
1 ATCTACTCCACTACTGCCTAGGGAGATA
55032580 GAATTATTAG
Statistics
Matches: 213, Mismatches: 60, Indels: 38
0.68 0.19 0.12
Matches are distributed among these distances:
41 7 0.03
42 4 0.02
43 36 0.17
44 123 0.58
45 37 0.17
46 3 0.01
47 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (44 bp):
ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
Found at i:55032630 original size:132 final size:132
Alignment explanation
Indices: 55031240--55032611 Score: 1245
Period size: 132 Copynumber: 10.4 Consensus size: 132
55031230 CGATAGATTA
* * * * * *
55031240 CACTGCCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAA
1 CACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
* * ** *
55031305 AATCTACCATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTAT
66 AATCTGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTAT
55031370 TC
131 TC
* * *
55031372 CACTGTTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
1 CACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
**
55031437 AATAC-GCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCACCCTA
66 AAT-CTGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTA
55031501 TTC
130 TTC
* *
55031504 CACTGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
1 CACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
** * * * * *
55031569 AATCCACCAACTTTGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCAATCTAT
66 AATCTGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTAT
55031634 TC
131 TC
*
55031636 CACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
1 CACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
* *
55031701 AATCTGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATAT
66 AATCTGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTAT
55031766 TC
131 TC
* * * * * * *
55031768 CACTGCTGCCCAGGGAGATAGAAGTATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGA
1 CACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
* *** * * * * * **
55031833 GATCTGTGGTCTT-AATGTACTCCACTGTAACT--TTAGAGAGATGAGATCTGTGGTCTT-AATC
66 AATCTGCCATCTTCGATCTACTCCAC--T-ACTGCCTAGGGAGATAAGATCTGTAATCTTCAATC
* *
55031894 CACTC
128 TATTC
* ** * * * ** ** ** * ** ** * *
55031899 CATTGCAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCT-ATTTTAGGGAGAT
1 CACTGCTGC-CCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTG-TAACCTCAGGGAGGT
* *** * * * * * * **
55031963 AAGA-CTTATATCTTCGATCTACTTCGCCAC--CAGTATGGGAAGACAAGATCTGCT-CTCTTTG
64 AAAATCTGCCATCTTCGATCTACTCCACTACTGC-CTA-GGG-AGATAAGATCTG-TAATCTTCA
*
55032024 ATCTATTT
125 ATCTATTC
**** * * * * ** * * * *
55032032 CA-TGCCAATACATGAAGACA-AGATCTGCTTTCTTCGATCTACTCCAC-GCCAA--TACA-TGA
1 CACTG-CTGCCCAGGGAGATAGA-AT-TACTGGCTTCAATGTACTCCACTG-TAACCT-CAGGGA
* ** * * * * * * * *
55032091 -ATAGAAGATCTGCTTTCTTCGATCTACTTCACGCCAAT-AC-ATGAAGACAAGATCTGCT-TTC
61 GGTA-AA-ATCTGCCATCTTCGATCTAC-TC-CACTACTGCCTAGGGAGATAAGATCTG-TAATC
* **
55032152 TTCGATAGATTC
121 TTCAATCTATTC
* * * * * *
55032164 CACTGCCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAA
1 CACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
* * ** *
55032229 AATCTACCATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTAT
66 AATCTGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTAT
55032294 TC
131 TC
* * *
55032296 CACTGTTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
1 CACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
*
55032361 AATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTAT
66 AATCTGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTAT
55032426 TC
131 TC
* * * *
55032428 CACTGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACCTCAGGGAGGTAA
1 CACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
* *
55032493 AATCTGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATAT
66 AATCTGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTAT
55032558 TC
131 TC
* *
55032560 CACTGCTGCCCAGGGAGATAGAATTATTAGCTTCAATGTACTCCACTGTAAC
1 CACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAAC
55032612 TTTAGAGAGA
Statistics
Matches: 1009, Mismatches: 196, Indels: 70
0.79 0.15 0.05
Matches are distributed among these distances:
129 2 0.00
130 9 0.01
131 57 0.06
132 874 0.87
133 55 0.05
134 7 0.01
135 5 0.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (132 bp):
CACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
AATCTGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTAT
TC
Found at i:55032711 original size:924 final size:924
Alignment explanation
Indices: 55030922--55032667 Score: 3161
Period size: 924 Copynumber: 1.9 Consensus size: 924
55030912 TATTGGCTTC
55030922 AATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTCTTAATCCACTCCATTGCAACTTC
1 AATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTCTTAATCCACTCCATTGCAACTTC
55030987 AAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGATAAGACTTATATCT
66 AAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGATAAGACTTATATCT
55031052 TCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGATCTATTTCATGCCAAT
131 TCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGATCTATTTCATGCCAAT
55031117 ACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAATAGAAGATCTGCTT
196 ACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAATAGAAGATCTGCTT
55031182 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATAGATTACACTGCC
261 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATAGATTACACTGCC
55031247 GACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTAC
326 GACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTAC
55031312 CATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTG
391 CATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTG
55031377 TTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATAC
456 TTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATAC
*
55031442 GCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCACCCTATTCCAC
521 GCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAACCTATTCCAC
*
55031507 TGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAAT
586 TGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTCCACCGTAACCTCAGGGAGGTAAAAT
* * * * *
55031572 CCACCAACTTTGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCC
651 CCACCAACTTCGATCTACTCCACTACTACCTAGGGAGATAAGATCTGTAATCATCAATATATTCC
* * * *
55031637 ACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAA
716 ACTGCTGCCCAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCTCAGAGAGATAAA
* * ** *
55031702 ATCTGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATT
781 ATCTGCCATCTTCAATCCACTCCACTACAACCTAAGGAGATAAGATCTGTAATCATCAATATATT
55031767 CCACTGCTGCCCAGGGAGATAGAAGTATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATG
846 CCACTGCTGCCCAGGGAGATAGAAGTATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATG
55031832 AGATCTGTGGTCTT
911 AGATCTGTGGTCTT
55031846 AATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTCTTAATCCACTCCATTGCAACTTC
1 AATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTCTTAATCCACTCCATTGCAACTTC
55031911 AAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGATAAGACTTATATCT
66 AAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGATAAGACTTATATCT
55031976 TCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGATCTATTTCATGCCAAT
131 TCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGATCTATTTCATGCCAAT
55032041 ACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAATAGAAGATCTGCTT
196 ACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAATAGAAGATCTGCTT
*
55032106 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATAGATTCCACTGCC
261 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATAGATTACACTGCC
55032171 GACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTAC
326 GACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTAC
55032236 CATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTG
391 CATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTG
*
55032301 TTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCC
456 TTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATAC
*
55032366 GCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCAC
521 GCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAACCTATTCCAC
*
55032431 TGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACCTCAGGGAGGTAAAAT
586 TGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTCCACCGTAACCTCAGGGAGGTAAAAT
** * *
55032496 CTGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCC
651 CCACCAACTTCGATCTACTCCACTACTACCTAGGGAGATAAGATCTGTAATCATCAATATATTCC
* * * * *
55032561 ACTGCTGCCCAGGGAGATAGAATTATTAGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAG
716 ACTGCTGCCCAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCTCAGAGAGATAAA
*** * * *
55032626 ATCTGTGGTCTT-AATCCACTCCATTGCAACTTCAAGGAGATA
781 ATCTGCCATCTTCAATCCACTCCACTACAACCT-AAGGAGATA
55032668 GGATTGGTTA
Statistics
Matches: 786, Mismatches: 35, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
923 13 0.02
924 773 0.98
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (924 bp):
AATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTCTTAATCCACTCCATTGCAACTTC
AAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGATAAGACTTATATCT
TCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGATCTATTTCATGCCAAT
ACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAATAGAAGATCTGCTT
TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATAGATTACACTGCC
GACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTAC
CATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTG
TTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATAC
GCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAACCTATTCCAC
TGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTCCACCGTAACCTCAGGGAGGTAAAAT
CCACCAACTTCGATCTACTCCACTACTACCTAGGGAGATAAGATCTGTAATCATCAATATATTCC
ACTGCTGCCCAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCTCAGAGAGATAAA
ATCTGCCATCTTCAATCCACTCCACTACAACCTAAGGAGATAAGATCTGTAATCATCAATATATT
CCACTGCTGCCCAGGGAGATAGAAGTATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATG
AGATCTGTGGTCTT
Found at i:55032770 original size:748 final size:748
Alignment explanation
Indices: 55031846--55033425 Score: 3115
Period size: 748 Copynumber: 2.1 Consensus size: 748
55031836 CTGTGGTCTT
55031846 AATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTCTTAATCCACTCCATTGCAACTTC
1 AATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTCTTAATCCACTCCATTGCAACTTC
55031911 AAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGATAAGACTTATATCT
66 AAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGATAAGACTTATATCT
*
55031976 TCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGATCTATTTCATGCCAAT
131 TCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGATCTACTTCATGCCAAT
55032041 ACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAATAGAAGATCTGCTT
196 ACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAATAGAAGATCTGCTT
55032106 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATAGATTCCACTGCC
261 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATAGATTCCACTGCC
55032171 GACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTAC
326 GACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTAC
55032236 CATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTG
391 CATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTG
55032301 TTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCC
456 TTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCC
55032366 GCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCAC
521 GCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCAC
55032431 TGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACCTCAGGGAGGTAAAAT
586 TGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACCTCAGGGAGGTAAAAT
*
55032496 CTGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCC
651 CCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCC
55032561 ACTGCTGCCCAGGGAGATAGAATTATTAGCTTC
716 ACTGCTGCCCAGGGAGATAGAATTATTAGCTTC
55032594 AATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTCTTAATCCACTCCATTGCAACTTC
1 AATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTCTTAATCCACTCCATTGCAACTTC
55032659 AAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGATAAGACTTATATCT
66 AAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGATAAGACTTATATCT
55032724 TCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGATCTACTTCATGCCAAT
131 TCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGATCTACTTCATGCCAAT
55032789 ACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAATAGAAGATCTGCTT
196 ACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAATAGAAGATCTGCTT
55032854 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATAGATTCCACTGCC
261 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATAGATTCCACTGCC
55032919 GACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTAC
326 GACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTAC
55032984 CATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTG
391 CATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTG
55033049 TTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCC
456 TTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCC
55033114 GCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCAC
521 GCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCAC
55033179 TGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACCTCAGGGAGGTAAAAT
586 TGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACCTCAGGGAGGTAAAAT
55033244 CCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCC
651 CCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCC
*
55033309 ACTGCTGCCCAGGGAGATAGAATTATTGGCTTC
716 ACTGCTGCCCAGGGAGATAGAATTATTAGCTTC
* *
55033342 AATGTACTCTACTGTAACTTTAGAGAGATGAGATCTGTGGTCTTAATCCACTCCATTACAACTTC
1 AATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTCTTAATCCACTCCATTGCAACTTC
55033407 AAGGAGATAGGATTGGTTA
66 AAGGAGATAGGATTGGTTA
55033426 ATTACACGCG
Statistics
Matches: 827, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
748 827 1.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (748 bp):
AATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTCTTAATCCACTCCATTGCAACTTC
AAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTTTAGGGAGATAAGACTTATATCT
TCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGATCTACTTCATGCCAAT
ACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAATAGAAGATCTGCTT
TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATAGATTCCACTGCC
GACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTAC
CATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTG
TTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCC
GCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCAC
TGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACCTCAGGGAGGTAAAAT
CCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCC
ACTGCTGCCCAGGGAGATAGAATTATTAGCTTC
Found at i:55032802 original size:44 final size:44
Alignment explanation
Indices: 55032749--55032905 Score: 260
Period size: 44 Copynumber: 3.6 Consensus size: 44
55032739 ACCAGTATGG
* * *
55032749 GAAGACAAGATCTGCTCTCTTTGATCTACTTCATGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
*
55032793 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
* *
55032837 GAATAGAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
55032881 GAAGACAAGATCTGCTTTCTTCGAT
1 GAAGACAAGATCTGCTTTCTTCGAT
55032906 AGATTCCACT
Statistics
Matches: 104, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 104 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (44 bp):
GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
Found at i:55032998 original size:132 final size:131
Alignment explanation
Indices: 55032854--55033359 Score: 531
Period size: 132 Copynumber: 3.8 Consensus size: 131
55032844 AGATCTGCTT
* * * * * * **
55032854 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT-TTCTTCGATAGATTCCACTGC
1 TCTTCGATCTACTTCACACCAATACAGGGAGATAAGATCTG-TAATCTTCAATCTATTCCACTGC
* * * * **
55032918 CGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTA
65 TG-CCAGAGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCG
55032983 CCA
129 CCA
* * ** ** * *
55032986 TTTTCGATCTACTCCACTA-CTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGT
1 TCTTCGATCTACTTCAC-ACCAATACAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGC
55033050 TGCTCA-AGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCC
65 TGC-CAGA-GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCC
55033114 GCCA
128 GCCA
* * *
55033118 TCTTCGATCTAC-TC-CACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTG
1 TCTTCGATCTACTTCACACCAAT-AC-AGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTG
* * * *
55033181 CTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACCTCAGGGAGGTAAAATCC
64 CTGCC-AGAGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCC
55033246 GCCA
128 GCCA
* * * * *
55033250 TCTTCGATCTAC-TC-CACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACTG
1 TCTTCGATCTACTTCACACCAAT-AC-AGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTG
* * *
55033313 CTGCCCAGGGAGATAGAATTATTGGCTTCAATGTACTCTACTGTAAC
64 CTG-CCAGAGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAAC
55033360 TTTAGAGAGA
Statistics
Matches: 322, Mismatches: 42, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
129 1 0.00
130 2 0.01
131 5 0.02
132 312 0.97
133 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (131 bp):
TCTTCGATCTACTTCACACCAATACAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
GCCAGAGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCC
A
Found at i:55033165 original size:44 final size:44
Alignment explanation
Indices: 55032992--55033327 Score: 179
Period size: 44 Copynumber: 7.6 Consensus size: 44
55032982 ACCATTTTCG
** *
55032992 ATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
* ** * * *
55033036 ATCTATTCCACTGTTG-CTCAAGGAGAT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTACTGCCT-AGGGAGATAAGATCTGTAAT--CTTCA
* * * * * * ** *
55033079 ATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCCGCCATCTTCG
1 ATCTACTCCACTACT-GCCT-AGGGAGATAAGATCTGTAATCTTCA
55033124 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
* * * * *
55033168 ATCTATTCCACTGCTGCCTAGGGAGAT-AGA-AT-TACTGGCCTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAAT--CTTCA
* * * * * * ** *
55033211 ATGTACTTCAC--CGTAACCTCAGGGAGGTAAAATCCGCCATCTTCG
1 ATCTACTCCACTAC-T-GCCT-AGGGAGATAAGATCTGTAATCTTCA
*
55033256 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
* * * *
55033300 ATATATTCCACTGCTGCCCAGGGAGATA
1 ATCTACTCCACTACTGCCTAGGGAGATA
55033328 GAATTATTGG
Statistics
Matches: 211, Mismatches: 62, Indels: 38
0.68 0.20 0.12
Matches are distributed among these distances:
41 7 0.03
42 4 0.02
43 36 0.17
44 122 0.58
45 37 0.18
46 2 0.01
47 3 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (44 bp):
ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
Found at i:55033415 original size:132 final size:132
Alignment explanation
Indices: 55032908--55033359 Score: 674
Period size: 132 Copynumber: 3.4 Consensus size: 132
55032898 TCTTCGATAG
* * * * * * *
55032908 ATTCCACTGCCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCTACTGTAACCTCAGGGAG
** * **
55032973 GTAAAATCTACCATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAAT-ATTCAA
66 GTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCA-TCAA
55033037 TCT
130 TCT
* * * *
55033040 ATTCCACTGTTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAG
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCTACTGTAACCTCAGGGAG
*
55033105 GTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAAT
66 GTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAAT
55033170 CT
131 CT
* * *
55033172 ATTCCACTGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACT-TCACCGTAACCTCAGGGA
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCT-ACTGTAACCTCAGGGA
55033236 GGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAA
65 GGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAA
*
55033301 TAT
130 TCT
*
55033304 ATTCCACTGCTGCCCAGGGAGATAGAATTATTGGCTTCAATGTACTCTACTGTAAC
1 ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCTACTGTAAC
55033360 TTTAGAGAGA
Statistics
Matches: 289, Mismatches: 28, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
132 288 1.00
133 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (132 bp):
ATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCTACTGTAACCTCAGGGAG
GTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAAT
CT
Found at i:55033415 original size:264 final size:264
Alignment explanation
Indices: 55032908--55033415 Score: 644
Period size: 264 Copynumber: 1.9 Consensus size: 264
55032898 TCTTCGATAG
* * *
55032908 ATTCCACTGCCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAG
1 ATTCCACTGCCGACCAGAGAGATAGAATTACTGGCCTCAATATACTCCACCGTAACCTCAGAGAG
* * **
55032973 GTAAAATCTACCATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAAT
66 GTAAAATCCACCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATATTCAAT
* * * *
55033038 CTATTCCACTGTTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGG
131 ATATTCCACTGCTGCCCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAG
* * * ** *
55033103 AGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
196 AGATAAAATCCGCCATCTTCAATCCACTCCACTACAACCTAAGGAGATAAGATCTGTAATCTTCA
55033168 ATCT
261 ATCT
* * * * *
55033172 ATTCCACTGCTG-CCTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACCTCAGGGA
1 ATTCCACTGCCGACC-AGAGAGATAGAATTACTGGCCTCAATATACTCCACCGTAACCTCAGAGA
*
55033236 GGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCA-TCA
65 GGTAAAATCCACCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAAT-ATTCA
* * * * *
55033300 ATATATTCCACTGCTGCCCAGGGAGATAGAATTATTGGCTTCAATGTACTCTACTGTAACTTTAG
129 ATATATTCCACTGCTGCCCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAG
* * * *** * *
55033365 AGAGATGAGATCTGTGGTCTT-AATCCACTCCATTACAACTTCAAGGAGATA
194 AGAGATAAAATCCGCCATCTTCAATCCACTCCACTACAACCT-AAGGAGATA
55033416 GGATTGGTTA
Statistics
Matches: 205, Mismatches: 36, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
263 16 0.08
264 188 0.92
265 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (264 bp):
ATTCCACTGCCGACCAGAGAGATAGAATTACTGGCCTCAATATACTCCACCGTAACCTCAGAGAG
GTAAAATCCACCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATATTCAAT
ATATTCCACTGCTGCCCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAG
AGATAAAATCCGCCATCTTCAATCCACTCCACTACAACCTAAGGAGATAAGATCTGTAATCTTCA
ATCT
Found at i:55033614 original size:44 final size:44
Alignment explanation
Indices: 55033544--55033744 Score: 294
Period size: 44 Copynumber: 4.6 Consensus size: 44
55033534 NNNNNNNNNN
* * * * *
55033544 GAAGACAAGATCTGCTCTCTTTGATCTATTTCATGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACAT
*
55033588 GAAGACAAGATCTGATTTCTTCGATCTACTCCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACAT
* *
55033632 GAATAGAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACAT
* * **
55033676 GAATAGAAGATCTGCTTTCTTCGATCTACTTAACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACAT
55033720 GAAGACAAGATCTGCTTTCTTCGAT
1 GAAGACAAGATCTGCTTTCTTCGAT
55033745 AGATTACACT
Statistics
Matches: 144, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 144 1.00
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.31
Consensus pattern (44 bp):
GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACAT
Found at i:55033862 original size:132 final size:131
Alignment explanation
Indices: 55033751--55034987 Score: 955
Period size: 132 Copynumber: 9.4 Consensus size: 131
55033741 CGATAGATTA
* * * * *
55033751 CACTGCCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAA
1 CACTGCTG-CCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
* * ** * *
55033816 AATCTACCATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTGAATCTAT
65 AATCCACCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTAT
55033881 TC
130 TC
* *
55033883 CACTGTTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
1 CACTGCTGC-CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
* **
55033948 AATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCACCCTAT
65 AATCCACCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTAT
55034013 TC
130 TC
*
55034015 CACTGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
1 CACTGCTGCC-AGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
* * * * *
55034080 AATCCACCAACTTTGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCAATCTAT
65 AATCCACCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTAT
55034145 TC
130 TC
*
55034147 CACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
1 CACTGCTG-CCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
** *
55034212 AATCTGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATATAT
65 AATCCACCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTAT
55034277 TC
130 TC
* * * * * *
55034279 CACTGCTGCCCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGA
1 CACTGCTG-CCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
* ***** * * * * ** * * * * **
55034344 GATCTGTGGTCTT-AATCCACTCCATTGCAACTTCAAGGAGATAGGAT-TGGTTA-CTTCTGTCT
65 AATCCACCATCTTCGATCTACTCCACTACTGCCT-AGGGAGATAAGATCT-GTAATCTTCAATCT
*
55034406 GTTC
128 ATTC
*** * ** * * *
55034410 CACTGCTATTTTAGGGAGATAAGACTTA-TATCTTCGATCTACTTCGCCACCAGT-A--T--GGG
1 CACTGC--TGCCAGGGAGAT-AGAATTACTGGCTTCAATGTAC-T--CCA-CTGTAACCTCAGGG
* ** * * * * * * * * *
55034469 AAG-ACAAGATCTGCTC-TCTTTGATCTACTTCATGCCAAT-AC-ATGAAGACAAGATCTGCT-T
59 AGGTA-AA-ATCCAC-CATCTTCGATCTACTCCA--CTACTGCCTAGGGAGATAAGATCTG-TAA
* *
55034529 TCTTCGATCTACTC
118 TCTTCAATCTATTC
* * * ** * * * * *
55034543 CAC-GCCAAT-ACA-TGA-ATAGAAGATCTGCTTTCTTCCATCTACTTCAC-G--CCCATACA-T
1 CACTG-C--TGCCAGGGAGATAG-A-AT-TACTGGCTTCAATGTACTCCACTGTAACC-T-CAGG
* * ** ** ** * * * * * * * *
55034600 GAAG-ACAGATCTGCTTTCTTCGATAGATTACACTGCCGACC-AGAGAG-TTAGA-AT-TACTGG
58 GAGGTA-AAATCCACCATCTTCGATCTACTCCACTACTG-CCTAGGGAGATAAGATCTGTAAT--
* *
55034660 CTTC-ATATACTC
119 CTTCAATCTATTC
* *
55034672 CACTGTTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
1 CACTGCTGC-CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
*
55034737 AATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTAT
65 AATCCACCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTAT
55034802 TC
130 TC
* * *
55034804 CACTGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACCTCAGGGAGGTAA
1 CACTGCTGCC-AGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
* * *
55034869 AATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATAT
65 AATCCACCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTAT
55034934 TC
130 TC
*
55034936 CACTGCTGCCCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAAC
1 CACTGCTG-CCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAAC
55034988 TTTAGAGAGA
Statistics
Matches: 883, Mismatches: 167, Indels: 110
0.76 0.14 0.09
Matches are distributed among these distances:
127 2 0.00
128 18 0.02
129 24 0.03
130 48 0.05
131 75 0.08
132 656 0.74
133 53 0.06
135 4 0.00
136 3 0.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (131 bp):
CACTGCTGCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAA
ATCCACCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATT
C
Found at i:55034004 original size:44 final size:44
Alignment explanation
Indices: 55033831--55034298 Score: 199
Period size: 44 Copynumber: 10.6 Consensus size: 44
55033821 ACCATTTTCG
** * *
55033831 ATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTGA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
* ** * * *
55033875 ATCTATTCCACTGTTG-CTCAAGGAGAT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTACTGCCT-AGGGAGATAAGATCTGTAAT--CTTCA
* * * * * * ** *
55033918 ATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCCGCCATCTTCG
1 ATCTACTCCACTACT-GCCT-AGGGAGATAAGATCTGTAATCTTCA
55033963 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
** * * * * *
55034007 CCCTATTCCACTGCTGCCTAGGGAGAT-AGA-AT-TACTGGCCTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAAT--CTTCA
* * * * * *** **
55034050 ATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCCACCAA-CTTTG
1 ATCTACTCCACTACT-GCCT-AGGGAGATAAGAT-CTGTAATCTTCA
* * *
55034095 ATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
* ** * * *
55034139 ATCTATTCCACTGTTGCCCAGGGAGAT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAAT--CTTCA
* * * * * ** *
55034182 ATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCTGCCATCTTCG
1 ATCTACTCCACTACT-GCCT-AGGGAGATAAGATCTGTAATCTTCA
55034227 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
* * * *
55034271 ATATATTCCACTGCTGCCCAGGGAGATA
1 ATCTACTCCACTACTGCCTAGGGAGATA
55034299 GAATTATTGG
Statistics
Matches: 300, Mismatches: 97, Indels: 54
0.67 0.22 0.12
Matches are distributed among these distances:
41 9 0.03
42 6 0.02
43 58 0.19
44 163 0.54
45 57 0.19
46 4 0.01
47 2 0.01
48 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (44 bp):
ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
Found at i:55034521 original size:44 final size:44
Alignment explanation
Indices: 55034468--55034623 Score: 233
Period size: 44 Copynumber: 3.6 Consensus size: 44
55034458 ACCAGTATGG
* * *
55034468 GAAGACAAGATCTGCTCTCTTTGATCTACTTCATGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
*
55034512 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
* * * *
55034556 GAATAGAAGATCTGCTTTCTTCCATCTACTTCACGCCCATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
55034600 GAAGAC-AGATCTGCTTTCTTCGAT
1 GAAGACAAGATCTGCTTTCTTCGAT
55034624 AGATTACACT
Statistics
Matches: 100, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
43 17 0.17
44 83 0.83
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (44 bp):
GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
Found at i:55034793 original size:44 final size:44
Alignment explanation
Indices: 55034745--55034955 Score: 162
Period size: 44 Copynumber: 4.8 Consensus size: 44
55034735 AAAATCCGCC
*
55034745 ATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTA
1 ATCTTCAATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTA
* * *
55034789 ATCTTCAATCTATTCCACTGCTGCCTAGGGAGAT-AGA-AT-TA
1 ATCTTCAATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTA
* * * * * * * * **
55034830 CTGGCCTCAATGTACTTCAC--CGTAACCTCAGGGAGGTAAAATCCGCC
1 AT--CTTCAATCTACTCCACTAC-T-GCCT-AGGGAGATAAGATCTGTA
*
55034877 ATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTA
1 ATCTTCAATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTA
* * * * *
55034921 ATCATCAATATATTCCACTGCTGCCCAGGGAGATA
1 ATCTTCAATCTACTCCACTACTGCCTAGGGAGATA
55034956 GAATTATTGG
Statistics
Matches: 124, Mismatches: 33, Indels: 20
0.70 0.19 0.11
Matches are distributed among these distances:
41 4 0.03
42 2 0.02
43 18 0.15
44 80 0.65
45 17 0.14
46 1 0.01
47 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.27
Consensus pattern (44 bp):
ATCTTCAATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTA
Found at i:55035279 original size:44 final size:44
Alignment explanation
Indices: 55035216--55035312 Score: 167
Period size: 44 Copynumber: 2.2 Consensus size: 44
55035206 NNNNNNNNNN
* *
55035216 TTCTTCGATCTACTCCACGCCAATACATGAATAGAAGATCTGCT
1 TTCTTCGATCTACTCCACGCCAATACATGAAGACAAGATCTGCT
*
55035260 TTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT
1 TTCTTCGATCTACTCCACGCCAATACATGAAGACAAGATCTGCT
55035304 TTCTTCGAT
1 TTCTTCGAT
55035313 AGATTCCACT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (44 bp):
TTCTTCGATCTACTCCACGCCAATACATGAAGACAAGATCTGCT
Found at i:55035513 original size:132 final size:132
Alignment explanation
Indices: 55035345--55035589 Score: 402
Period size: 132 Copynumber: 1.9 Consensus size: 132
55035335 GTTAGATCTA
* ** *
55035345 CCATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAAT-ATTCAATCTATTCCAC
1 CCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCA-TCAATATATTCCAC
* *
55035409 TGTTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAAT
65 TGCTGCCCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAAT
55035474 CCG
130 CCG
55035477 CCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACT
1 CCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACT
* *
55035542 GCTGCCCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAAC
66 GCTGCCCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAAC
55035590 TTTAGAGAGA
Statistics
Matches: 104, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
132 103 0.99
133 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (132 bp):
CCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACT
GCTGCCCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATC
CG
Found at i:55035776 original size:44 final size:44
Alignment explanation
Indices: 55035727--55035839 Score: 190
Period size: 44 Copynumber: 2.6 Consensus size: 44
55035717 ACCAGTATGG
* * * *
55035727 GAAGACAAGATCTGCTCTCTTTGATCTATTTCATGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
55035771 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
55035815 GAAGACAAGATCTGCTTTCTTCGAT
1 GAAGACAAGATCTGCTTTCTTCGAT
55035840 AGATTACACT
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 65 1.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (44 bp):
GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
Found at i:55036027 original size:132 final size:132
Alignment explanation
Indices: 55035855--55036302 Score: 666
Period size: 132 Copynumber: 3.4 Consensus size: 132
55035845 ACACTGCCGA
* * *
55035855 CCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTACCA
1 CCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAAAATCTACCA
* *
55035920 TTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTACACTGTT
66 TTTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGTT
55035985 GC
131 GC
* * * *
55035987 TCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCA
1 CCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAAAATCTACC-
* * * *
55036052 ACTTT-GATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGT
65 ATTTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGT
55036116 TGC
130 TGC
* *
55036119 CCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCA
1 CCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAAAATCTACCA
* * * *
55036184 TCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCA-TCAATATATTCCACTGC
66 TTTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-ATTCAATCTATTCCACTGT
55036248 TGC
130 TGC
* * *
55036251 CCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAG
1 CCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAGAG
55036303 ATGAGATCTG
Statistics
Matches: 284, Mismatches: 29, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
131 3 0.01
132 277 0.98
133 4 0.01
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (132 bp):
CCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAAAATCTACCA
TTTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGTT
GC
Found at i:55036112 original size:44 final size:44
Alignment explanation
Indices: 55036058--55036261 Score: 137
Period size: 44 Copynumber: 4.6 Consensus size: 44
55036048 ACCAACTTTG
* **
55036058 ATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTACTACCCAGGGAGATAAGATCTGTAATCTTCA
* ** * * *
55036102 ATCTATTCCACTGTTGCCCAGGGAGAT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTACTACCCAGGGAGATAAGATCTGTAAT--CTTCA
* * * * ** *
55036145 ATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCTGCCATCTTCG
1 ATCTACTCCACTACT-ACC-CAGGGAGATAAGATCTGTAATCTTCA
* * *
55036190 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCA
1 ATCTACTCCACTACTACCCAGGGAGATAAGATCTGTAATCTTCA
* * * *
55036234 ATATATTCCACTGCTGCCCAGGGAGATA
1 ATCTACTCCACTACTACCCAGGGAGATA
55036262 GAATTATTGG
Statistics
Matches: 118, Mismatches: 34, Indels: 16
0.70 0.20 0.10
Matches are distributed among these distances:
41 3 0.03
42 2 0.02
43 20 0.17
44 71 0.60
45 19 0.16
46 2 0.02
47 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (44 bp):
ATCTACTCCACTACTACCCAGGGAGATAAGATCTGTAATCTTCA
Found at i:55036484 original size:44 final size:44
Alignment explanation
Indices: 55036431--55036587 Score: 260
Period size: 44 Copynumber: 3.6 Consensus size: 44
55036421 ACCAGTATGG
* * *
55036431 GAAGACAAGATCTGCTCTCTTTGATCTACTTCATGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
*
55036475 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
* *
55036519 GAATAGAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
55036563 GAAGACAAGATCTGCTTTCTTCGAT
1 GAAGACAAGATCTGCTTTCTTCGAT
55036588 AGATTACACT
Statistics
Matches: 104, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 104 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (44 bp):
GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
Found at i:55036680 original size:132 final size:132
Alignment explanation
Indices: 55036536--55037050 Score: 400
Period size: 132 Copynumber: 3.9 Consensus size: 132
55036526 AGATCTGCTT
* * * * * *
55036536 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT-TTCTTCGATAGATTACACTGC
1 TCTTCGATCTACTCCACGACAATACAGGAAGACAAGATCTG-TAATATTCAATAGATTACACTGC
*
55036600 CGAC-C-AGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATC
65 CG-CTCAAG-GAGATAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATC
*
55036663 TACCA
128 CACCA
* * ** ** * * ** * **
55036668 TTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGTT
1 TCTTCGATCTACTCCACGACAATACAGGAAGACAAGATCTGTAATATTCAATAGATTACACTGCC
* * *
55036733 GCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGC
66 GCTCAAGGAGATAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCCAC
55036798 CA
131 CA
* * * * * * ** *
55036800 TCTTCGATCTACTCCAC--TATTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTG
1 TCTTCGATCTACTCCACGACAAT-AC-AGGAAGACAAGATCTGTAATATTCAATAGATTACACTG
* * * * * * *
55036863 CTGC-CTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACCTCAGGGAGGTAAAATC
64 CCGCTC-AAGGAGATAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATC
*
55036927 CGCCA
128 CACCA
* * * * * *
55036932 TCTTCGATCTACTCCACTAC--TGCCTAGGGAGATAAGATCTGTAATCA-TCAATATATTCCACT
1 TCTTCGATCTACTCCACGACAAT-AC-AGGAAGACAAGATCTGTAAT-ATTCAATAGATTACACT
* * * * * * *
55036994 GCTGCCCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAG
63 GCCGCTCAAGGAGATAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAG
55037051 ATGAGATCTG
Statistics
Matches: 327, Mismatches: 46, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
130 1 0.00
131 3 0.01
132 320 0.98
133 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (132 bp):
TCTTCGATCTACTCCACGACAATACAGGAAGACAAGATCTGTAATATTCAATAGATTACACTGCC
GCTCAAGGAGATAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCCAC
CA
Found at i:55036831 original size:704 final size:702
Alignment explanation
Indices: 55035354--55036833 Score: 1958
Period size: 704 Copynumber: 2.1 Consensus size: 702
55035344 ACCATTTTCG
** * * * * * * * * *
55035354 ATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGTTGCTCAA
1 ATCTACTCCACTACTACTCAGGGAGATAAAATCCGCAATCTTCAATCTACTCCACTATTGCCCAG
55035419 GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTT
66 GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTT
55035484 CGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACTGCTGCCC
131 CGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACTGCTGCCC
55035549 AGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTC
196 AGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTC
*
55035614 TTAATCCACTCCATTGCAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATT
261 TTAATCCACTCCATTACAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATT
55035679 TTAGGGAGATAAGACTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTC
326 TTAGGGAGATAAGACTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTC
* *
55035744 TCTTTGATCTATTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCA
391 TCTTTGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCA
* * **
55035809 ATACATGAAGACAAGATCTGCTTTCTTCGATAGATTACACTGCCGACCAGAGAGTTAGAATTACT
456 ATACATGAAGACAAGATCTGCTTTCTTCGATAGATTACACTGCCAAACAGAGAGCAAGAATTACT
* * * ** * *
55035874 GGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTACCATTTTCGATCTACTCCACTA
521 GGCTTCAATAGACTACACTGCAACCTCAGAGAGGTAAAATCTACCAGCTTCAATATACTCCACTA
* * * * ** * **
55035939 CTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTACACTGTTGCTCAAGGAGATAGAATTA
586 C-GCTCAGAGAGATAAAATCTACAATATTCAATCTACTACACTACTGCTCAAGGAGATAGAATTA
* * * * * **
55036004 CTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCAACTTTG
650 AT-GATTCAATCTACTCCACTGTAACCTCAAGGAGATAAAATCCACCAACTTCA
* * * * * * *
55036058 ATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGCCCAG
1 ATCTACTCCACTACTACTCAGGGAGATAAAATCCGCAATCTTCAATCTACTCCACTATTGCCCAG
*
55036123 GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTT
66 GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTT
55036188 CGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACTGCTGCCC
131 CGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACTGCTGCCC
55036253 AGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTC
196 AGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTC
55036318 TTAATCCACTCCATTACAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATT
261 TTAATCCACTCCATTACAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATT
55036383 TTAGGGAGATAAGACTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTC
326 TTAGGGAGATAAGACTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTC
55036448 TCTTTGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCA
391 TCTTTGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCA
* * **
55036513 ATACATGAATAGAAGATCTGCTTTCTTCGATCTACTT-CAC-GCCAATACATGA-AGACAAG-AT
456 ATACATGAAGACAAGATCTGCTTTCTTCGATAGA-TTACACTGCCAA-ACA-GAGAG-CAAGAAT
* ** * * * * * **
55036574 CTGCTTTCTTCGATAGATTACACTGCCGA-C-CAGAGAGTTAGAAT-TACTGGCTTCAATATACT
517 -TACTGGCTTCAATAGACTACACTG-CAACCTCAGAGAGGTAAAATCTACCAGCTTCAATATACT
* * * * * * * *
55036636 CCACTGTAAC-CTCAGAGAGGTAAAATCTACCATTTTCGATCTACTCCACTACTGTTTAGGGAGA
580 CCAC--T-ACGCTCAGAGAGATAAAATCTACAATATTCAATCTACTACACTACTGCTCAAGGAGA
* * ** * * ***
55036700 TAAGATCTGTAAT-ATTCAATCTATTCCACTGT-TGCTCAAGGAGATAGAAT-TACTGGCTTCA
642 T-AGA-AT-TAATGATTCAATCTACTCCACTGTAACCTCAAGGAGATAAAATCCACCAACTTCA
* * * * * *
55036761 ATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTATTGCCT
1 ATCTACTCCACTACT-A-CTCAGGGAGATAAAATCCGCAATCTTCAATCTACTCCACTATTGCCC
55036825 AGGGAGATA
64 AGGGAGATA
55036834 AGATCTGTAA
Statistics
Matches: 681, Mismatches: 81, Indels: 28
0.86 0.10 0.04
Matches are distributed among these distances:
702 1 0.00
703 36 0.05
704 593 0.87
705 44 0.06
706 4 0.01
707 3 0.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (702 bp):
ATCTACTCCACTACTACTCAGGGAGATAAAATCCGCAATCTTCAATCTACTCCACTATTGCCCAG
GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTT
CGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACTGCTGCCC
AGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTC
TTAATCCACTCCATTACAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATT
TTAGGGAGATAAGACTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTC
TCTTTGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCA
ATACATGAAGACAAGATCTGCTTTCTTCGATAGATTACACTGCCAAACAGAGAGCAAGAATTACT
GGCTTCAATAGACTACACTGCAACCTCAGAGAGGTAAAATCTACCAGCTTCAATATACTCCACTA
CGCTCAGAGAGATAAAATCTACAATATTCAATCTACTACACTACTGCTCAAGGAGATAGAATTAA
TGATTCAATCTACTCCACTGTAACCTCAAGGAGATAAAATCCACCAACTTCA
Found at i:55036847 original size:44 final size:44
Alignment explanation
Indices: 55036674--55037009 Score: 186
Period size: 44 Copynumber: 7.6 Consensus size: 44
55036664 ACCATTTTCG
* ** *
55036674 ATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCA
1 ATCTACTCCACTGCTGCCTAGGGAGATAAGATCTGTAATCTTCA
* * * * *
55036718 ATCTATTCCACTGTTG-CTCAAGGAGAT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTGCTGCCT-AGGGAGATAAGATCTGTAAT--CTTCA
* * * * * ** *
55036761 ATGTACTCCACTG-TAACCTCAGGGAGGTAAAATCCGCCATCTTCG
1 ATCTACTCCACTGCT-GCCT-AGGGAGATAAGATCTGTAATCTTCA
**
55036806 ATCTACTCCACTATTGCCTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTGCTGCCTAGGGAGATAAGATCTGTAATCTTCA
* * * *
55036850 ATCTATTCCACTGCTGCCTAGGGAGAT-AGA-AT-TACTGGCCTCA
1 ATCTACTCCACTGCTGCCTAGGGAGATAAGATCTGTAAT--CTTCA
* * * * * * * ** *
55036893 ATGTACTTCACCG-TAACCTCAGGGAGGTAAAATCCGCCATCTTCG
1 ATCTACTCCACTGCT-GCCT-AGGGAGATAAGATCTGTAATCTTCA
* *
55036938 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCA
1 ATCTACTCCACTGCTGCCTAGGGAGATAAGATCTGTAATCTTCA
* * *
55036982 ATATATTCCACTGCTGCCCAGGGAGATA
1 ATCTACTCCACTGCTGCCTAGGGAGATA
55037010 GAATTATTGG
Statistics
Matches: 210, Mismatches: 65, Indels: 34
0.68 0.21 0.11
Matches are distributed among these distances:
41 6 0.03
42 4 0.02
43 38 0.18
44 121 0.58
45 37 0.18
46 2 0.01
47 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (44 bp):
ATCTACTCCACTGCTGCCTAGGGAGATAAGATCTGTAATCTTCA
Found at i:55037060 original size:616 final size:613
Alignment explanation
Indices: 55035993--55037657 Score: 1640
Period size: 616 Copynumber: 2.7 Consensus size: 613
55035983 TTGCTCAAGG
* * * *
55035993 AGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCAACTTT-
1 AGATAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTACC-ATTTTC
* *
55036057 GATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGCCCA
65 GATCTACTCCACTACTATTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTG-CCA
*
55036122 GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
129 AGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
* *
55036187 TCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACTGCTGCC
194 TCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCC
* * * * * * * * * ***
55036252 CAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGT
259 TAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
* * * ** * * * * ** *
55036317 CTT-AATCCACTCCATTACAACTTCAAGGAGATAGGAT-TGGTTA-CTTCTGTCTGTTCCACTGC
324 CTTCGATCTACTCCACTACTGCCT-AGGGAGATAAGATCT-GTAATCTTCAATCTATTCCACTGC
*** * * * * *
55036379 TATTTTAGGGAGATAAGACTTATAT--CTTCGATCTACTTCGCCACCAGT-A-TGGGAAGACAAG
387 T-GCCTAGGGAGAT-AGAATTAT-TGGCTTCAATGTAC-T--CCA-CTGTAACTGAGAAGACAAG
* * * * *
55036440 ATCTGCT-CTCTTTGATCTACTTCA-TGCCAA-TACATGAAGACAAGATCTGCTTTCTTC-GATC
445 ATCTG-TGCTC-TTAATCCACTCCATTG-CAACTACAAGAAGACAAGAT-TGCTTACTTCTG-TC
* * * * * *
55036501 TACTCCAC-GCCAATACATGAATAGAAGATCTGCTTTCTTCGATCTACTTC-ACGCCAATACATG
505 TACTCCACTGCCAATACAGGAAGAGAAGA-CTGATATCTTCGATCTACTTCGACACCAATACAGG
* * *
55036564 AAGACAAGATCTGCTTTCTTCGATAGA-TTACACTGCCGA-CCA-GA
569 AAGACAAGATCTGCTCTCTTCGATAGACTT-CA-TGCCAATACATGA
*
55036608 GAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTACCATTTTC
1 -AGATAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTACCATTTTC
* *
55036673 GATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGTTGCTCA
65 GATCTACTCCACTACTATTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGC-CA
*
55036738 AGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCT
129 AGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCT
*
55036803 TCGATCTACTCCACTATTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCC
194 TCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCC
* * *
55036868 TAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACCTCAGGGAGGTAAAATCCGCCAT
259 TAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
* *
55036933 CTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACTGCTG
324 CTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
* * **
55036998 CCCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTG
389 CCTAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAAC-TGAGA-AGACAAGATCTGTG
* * * * * * ** *
55037063 GTCTTAATCCACTCCATTGCAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCT
452 CTCTTAATCCACTCCATTGCAACTACAAGAAGACAAGATTGCTTACTTCTGTCTACTCCACTGCC
* ** * * * * * **
55037128 ATTTTAGGGAGATAAGACTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTG
517 AATACAGGAAGAGAAGACTGATATCTTCGATCTACTTCGACACCAATACAGGAAGACAAGATCTG
* **
55037193 CTCTCTTTGATCTACTTCATGCCAATACATGA
582 CTCTCTTCGATAGACTTCATGCCAATACATGA
* * ** * * * *
55037225 AGACA-AGATCTGCTTTCTTCGATCTACTCCAC-GCCAA--TACATGA-A--TAGAAGATCT-GC
1 AGATAGA-AT-TACTGGCTTCAATATACTCCACTG-TAACCT-CA-GAGAGGTA-AA-ATCTACC
* * ** * ** * * * * * ** *
55037282 TTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCT-TTCTTCGATAGATTACACT
59 ATT-TTCGATCTACTCCACTACTATTTAGGGAGATAAGATCTG-TAATCTTCAATCTATTCCACT
** * * *
55037346 GCCGACC-AGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAAT
122 GTTG-CCAAG-GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAAT
* * ** * *
55037410 CTACCATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTGAATCTATTCC
185 CTGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCC
* *
55037475 ACTGTTG-CTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
250 ACTGCTGCCT-AGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
**
55037539 AATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCACCCTAT
314 AATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTAT
* *
55037604 TCCACTGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTCCACTGTAAC
379 TCCACTGCTGCCTAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAAC
55037658 CTCAGGGAGG
Statistics
Matches: 875, Mismatches: 142, Indels: 64
0.81 0.13 0.06
Matches are distributed among these distances:
612 3 0.00
613 4 0.00
614 3 0.00
615 80 0.09
616 728 0.83
617 57 0.07
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (613 bp):
AGATAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTACCATTTTCG
ATCTACTCCACTACTATTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGCCAAG
GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTC
GATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCTA
GGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCT
TCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCC
TAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACTGAGAAGACAAGATCTGTGCTCT
TAATCCACTCCATTGCAACTACAAGAAGACAAGATTGCTTACTTCTGTCTACTCCACTGCCAATA
CAGGAAGAGAAGACTGATATCTTCGATCTACTTCGACACCAATACAGGAAGACAAGATCTGCTCT
CTTCGATAGACTTCATGCCAATACATGA
Found at i:55037097 original size:132 final size:129
Alignment explanation
Indices: 55036594--55037041 Score: 610
Period size: 132 Copynumber: 3.4 Consensus size: 129
55036584 CGATAGATTA
* * * * * *
55036594 CACTGCCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAA
1 CACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
** * **
55036659 AATCTACCATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAAT-ATTCAATCTA
66 AATCCGCCATCTTCGATCTACTCCA-T--TGCCTAGGGAGATAAGATCTGTAATCA-TCAATCTA
55036723 TTC
127 TTC
* * *
55036726 CACTGTTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
1 CACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
*
55036791 AATCCGCCATCTTCGATCTACTCCACTATTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTAT
66 AATCCGCCATCTTCGATCTACT-C-C-ATTGCCTAGGGAGATAAGATCTGTAATCATCAATCTAT
55036856 TC
128 TC
* * * *
55036858 CACTGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACCTCAGGGAGGTAA
1 CACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
*
55036923 AATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATAT
66 AATCCGCCATCTTCGATCTACTCCA-T--TGCCTAGGGAGATAAGATCTGTAATCATCAATCTAT
55036988 TC
128 TC
*
55036990 CACTGCTGCCCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAAC
1 CACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAAC
55037042 TTTAGAGAGA
Statistics
Matches: 280, Mismatches: 29, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
129 1 0.00
130 2 0.01
131 1 0.00
132 272 0.97
133 1 0.00
134 2 0.01
135 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (129 bp):
CACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
AATCCGCCATCTTCGATCTACTCCATTGCCTAGGGAGATAAGATCTGTAATCATCAATCTATTC
Found at i:55037232 original size:44 final size:44
Alignment explanation
Indices: 55037179--55037335 Score: 260
Period size: 44 Copynumber: 3.6 Consensus size: 44
55037169 ACCAGTATGG
* * *
55037179 GAAGACAAGATCTGCTCTCTTTGATCTACTTCATGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
*
55037223 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
* *
55037267 GAATAGAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
55037311 GAAGACAAGATCTGCTTTCTTCGAT
1 GAAGACAAGATCTGCTTTCTTCGAT
55037336 AGATTACACT
Statistics
Matches: 104, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 104 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (44 bp):
GAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
Found at i:55037428 original size:132 final size:131
Alignment explanation
Indices: 55037284--55038565 Score: 731
Period size: 132 Copynumber: 9.7 Consensus size: 131
55037274 AGATCTGCTT
* * * * * * ** *
55037284 TCTTCGATCTACTTCACGCCAATAC-ATGAAGACAAGATCTGCT-TTCTTCGATAGATTACACTG
1 TCTTCGATCTACTTC-CACCACTACTAGGGAGATAAGATCTG-TAATCTTCGATCTATTCCACTG
* * * * *
55037347 CCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCT
64 CTG-CCAGAGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCC
55037412 ACCA
128 ACCA
* * ** *
55037416 TTTTCGATCTAC-TCCACTACTGTTTAGGGAGATAAGATCTGTAATATT-GAATCTATTCCACTG
1 TCTTCGATCTACTTCCACCACT-ACTAGGGAGATAAGATCTGTAATCTTCG-ATCTATTCCACTG
*
55037479 TTGCTCA-AGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATC
64 CTGC-CAGA-GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATC
*
55037543 CGCCA
127 CACCA
* * *
55037548 TCTTCGATCTAC-TCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTC-ACCCTATTCCACTG
1 TCTTCGATCTACTTCCACCACT-ACTAGGGAGATAAGATCTGTAATCTTCGA-TCTATTCCACTG
* *
55037611 CTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCC
64 CTGCC-AGAGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCC
55037676 ACCA
128 ACCA
* * * * * *
55037680 ACTTTGATCTGC-TCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGT
1 TCTTCGATCTACTTCCACCACTAC-TAGGGAGATAAGATCTGTAATCTTCGATCTATTCCACTGC
* **
55037744 TGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTG
65 TG-CCAGAGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCA
55037809 CCA
129 CCA
* * * *
55037812 TCTTCGATCTAC-TCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATATATTCCACTGC
1 TCTTCGATCTACTTCCACCACT-ACTAGGGAGATAAGATCTGTAATCTTCGATCTATTCCACTGC
* * * * * * * *
55037876 TGCCCAGGGAGATAGAATTA-TGGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAGATCT
65 TG-CCAGAGAGATAGAATTACT-GGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCC
****
55037940 GTGG
128 ACCA
* * * * * * * * *
55037944 TCTT-AATCCAC-TCCATTGCAACTTC-AAGGAGATAGGAT-TGGTTA-CTTTTG-TCTGTTCCA
1 TCTTCGATCTACTTCCA---CCACTACTAGGGAGATAAGATCT-GTAATC-TTCGATCTATTCCA
*** * * ** * * * *
55038003 CTGCTATTTTAGGGAGATAAGACTTA-TATCTTCGATCTACTTCGCCACCAGT-A--T-GGGGAG
61 CTGC--TGCCAGAGAGAT-AGAATTACTGGCTTCAATGTAC-T--CCA-CTGTAACCTCAGGGAG
* * * *
55038063 ATAAGA-CTTA-TA
119 GTAAAATC-CACCA
* * * *
55038075 TCTTCGATCTACTTCGCCACCAGTA-T-GGGAAGACAAGATCTGCT-CTCTTTGATCTACTT-CA
1 TCTTCGATCTACTT--CCACCACTACTAGGG-AGATAAGATCTG-TAATCTTCGATCTA-TTCCA
* * * ** * * * * * **
55038136 -TGCCAAT-ACATGA-AGACA-AGATCTGCTTTCTTCGATCTACTCCAC-GCCAACATGA-ATA-
61 CTG-C--TGCCA-GAGAGATAGA-AT-TACTGGCTTCAATGTACTCCACTG-TAACCTCAGGGAG
* ** **
55038194 G-AAGATCTGCTT
119 GTAAAATCCACCA
* * * * * * **
55038206 TCTTCGATCTACTTCACGCCAATAC-ATGAAGAGAAGATCTGCT-TTCTTCGATAGATTCCACTG
1 TCTTCGATCTACTTC-CACCACTACTAGGGAGATAAGATCTG-TAATCTTCGATCTATTCCACTG
* * * * *
55038269 CCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCT
64 CTG-CCAGAGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCC
55038334 ACCA
128 ACCA
* * ** *
55038338 TTTTCGATCTAC-TCCACTACTGTTTAGGGAGATAAGATCTGTAATATT-GAATCTATTCCACTG
1 TCTTCGATCTACTTCCACCACT-ACTAGGGAGATAAGATCTGTAATCTTCG-ATCTATTCCACTG
*
55038401 TTGCTCA-AGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATC
64 CTGC-CAGA-GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATC
*
55038465 CGCCA
127 CACCA
* * *
55038470 TCTTCGATCTAC-TCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTC-ACCCTATTCCACTG
1 TCTTCGATCTACTTCCACCACT-ACTAGGGAGATAAGATCTGTAATCTTCGA-TCTATTCCACTG
* *
55038533 CTGCCTAGGGAGATAGAATTACTGGCCTCAATG
64 CTGCC-AGAGAGATAGAATTACTGGCTTCAATG
55038566 GAGATAGAAT
Statistics
Matches: 917, Mismatches: 159, Indels: 148
0.75 0.13 0.12
Matches are distributed among these distances:
128 1 0.00
129 28 0.03
130 58 0.06
131 70 0.08
132 703 0.77
133 41 0.04
134 6 0.01
135 7 0.01
136 3 0.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (131 bp):
TCTTCGATCTACTTCCACCACTACTAGGGAGATAAGATCTGTAATCTTCGATCTATTCCACTGCT
GCCAGAGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACC
A
Found at i:55037595 original size:44 final size:44
Alignment explanation
Indices: 55037422--55037889 Score: 199
Period size: 44 Copynumber: 10.6 Consensus size: 44
55037412 ACCATTTTCG
** * *
55037422 ATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTGA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
* ** * * *
55037466 ATCTATTCCACTGTTG-CTCAAGGAGAT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTACTGCCT-AGGGAGATAAGATCTGTAAT--CTTCA
* * * * * * ** *
55037509 ATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCCGCCATCTTCG
1 ATCTACTCCACTACT-GCCT-AGGGAGATAAGATCTGTAATCTTCA
55037554 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
** * * * * *
55037598 CCCTATTCCACTGCTGCCTAGGGAGAT-AGA-AT-TACTGGCCTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAAT--CTTCA
* * * * * *** **
55037641 ATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCCACCAA-CTTTG
1 ATCTACTCCACTACT-GCCT-AGGGAGATAAGAT-CTGTAATCTTCA
* * *
55037686 ATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
* ** * * *
55037730 ATCTATTCCACTGTTGCCCAGGGAGAT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAAT--CTTCA
* * * * * ** *
55037773 ATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCTGCCATCTTCG
1 ATCTACTCCACTACT-GCCT-AGGGAGATAAGATCTGTAATCTTCA
55037818 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
* * * *
55037862 ATATATTCCACTGCTGCCCAGGGAGATA
1 ATCTACTCCACTACTGCCTAGGGAGATA
55037890 GAATTATGGG
Statistics
Matches: 300, Mismatches: 97, Indels: 54
0.67 0.22 0.12
Matches are distributed among these distances:
41 9 0.03
42 6 0.02
43 58 0.19
44 163 0.54
45 57 0.19
46 4 0.01
47 2 0.01
48 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (44 bp):
ATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
Found at i:55037670 original size:264 final size:264
Alignment explanation
Indices: 55037342--55038817 Score: 1005
Period size: 264 Copynumber: 5.5 Consensus size: 264
55037332 CGATAGATTA
* * * * *
55037342 CACTGCCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAA
1 CACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAA
* * ** *
55037407 AATCTACC-ATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTGAATCTA
66 AATCCACCAACTTT-GATCTACTCCACTACTACTTAGGGAGATAAGATCTGTAATATTCAATCTA
*
55037471 TTCCACTGTTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGG
130 TTCCACTGTTGCCCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGG
* *
55037536 TAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCACCC
195 TAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAACA
55037601 TATTC
260 TATTC
* * *
55037606 CACTGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
1 CACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAA
* *
55037671 AATCCACCAACTTTGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCAATCTAT
66 AATCCACCAACTTTGATCTACTCCACTACTACTTAGGGAGATAAGATCTGTAATATTCAATCTAT
*
55037736 TCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGT
131 TCCACTGTTGCCCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGT
* *
55037801 AAAATCTGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATAT
196 AAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAACAT
55037866 ATTC
261 ATTC
* * * *
55037870 CACTGCTGCCCAGGGAGATAGAATTA-TGGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATG
1 CACTGCTGCCCAGGGAGATAGAATTACT-GGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTA
* ****** * * * * * * * ***
55037934 AGATCTGTGGTC-TTAATCCACTCCATTGCAACTTCAAGGAGATAGGAT-TGGT--TACTTTTGT
65 AAATCCACCAACTTTGATCTACTCCACTACTACTT-AGGGAGATAAGATCT-GTAATA-TTCAAT
* *** * * ** * * *
55037995 CTGTTCCACTGCTAT-TTTAGGGAGATAAGACTTA-TATCTTCGATCTACTTCGCCACCAGT-A-
127 CTATTCCACTG-T-TGCCCAAGGAGAT-AGAATTACTGGCTTCAATGTAC-T--CCA-CTGTAAC
* * * **** * * * * *
55038056 -T-GGGGAGATAAGA-CTTATATCTTCGATCTACTTCGCCAC--CAGTATGGGAAGACAAGATCT
185 CTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGC-CTA-GGG-AGATAAGATCT
* * *
55038116 GCT-CTCTTTGATC-TACTT-
247 G-TAATC-TTCAACATA-TTC
**** * * * * ** * * * * * *
55038134 CA-TGCCAATACATGAAGACA-AGATCTGCTTTCTTCGATCTACTCCAC-GCCAACATGA-ATA-
1 CACTG-CTGCCCAGGGAGATAGA-AT-TACTGGCTTCAATGTACTCCACTG-TAACCTCAGAGAG
* ** *** * * * * * * * * *
55038194 G-AAGATCTGCTTTCTTCGATCTACTTCACGCCAATAC--ATGAAGAGAAGATCTGCT-TTCTTC
62 GTAAAATCCACCAACTTTGATCTAC-TC-CACTACTACTTAGGGAGATAAGATCTG-TAATATTC
* ** ** * * *
55038255 GATAGATTCCACTGCCGACC-AGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTC
124 AATCTATTCCACTGTTGCCCAAG-GAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTC
* ** * ** *
55038319 AGAGAGGTAAAATCTACCATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATA
188 AGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATC
*
55038384 TTGAATC-TATTC
253 TTCAA-CATATTC
* * * *
55038396 CACTGTTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAA
1 CACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAA
* * * * * * **
55038461 AATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCACCCTAT
66 AATCCACCAACTTTGATCTACTCCACTACTACTTAGGGAGATAAGATCTGTAATATTCAATCTAT
* * * *
55038526 TCCACTGCTGCCTAGGGAGATAGAATTACTGGCCTCAATGGAGATAGAATTACTGGCCTCAATGT
131 TCCACTGTTGCCCAAGGAGATAGAATTACTGG-CT---T-CA-AT-G---TACT---C-C-----
* *
55038591 ACTTCACCGTAACCTGAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGAGA
177 AC-T----GTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGA
* *
55038656 GATAAGATCTGTAATCATCAATATATTC
237 GATAAGATCTGTAATCTTCAACATATTC
* *
55038684 TACTGCTGCCCAGGGAGATAGAATTACTGGCCTT-AATGTACTCCACTGTAACCTCAGGGAGGTA
1 CACTGCTGCCCAGGGAGATAGAATTACTGG-CTTCAATGTACTCCACTGTAACCTCAGAGAGGTA
* * * *
55038748 AAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAATCTA
65 AAATCCACCAACTTTGATCTACTCCACTACTACTTAGGGAGATAAGATCTGTAATATTCAATCTA
55038813 TTCCA
130 TTCCA
55038818 TATTTTCCCA
Statistics
Matches: 926, Mismatches: 208, Indels: 132
0.73 0.16 0.10
Matches are distributed among these distances:
258 3 0.00
259 4 0.00
261 39 0.04
262 77 0.08
263 105 0.11
264 438 0.47
265 45 0.05
266 1 0.00
267 4 0.00
268 4 0.00
269 1 0.00
270 2 0.00
274 4 0.00
277 1 0.00
278 1 0.00
283 2 0.00
284 1 0.00
288 191 0.21
289 3 0.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (264 bp):
CACTGCTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGAGAGGTAA
AATCCACCAACTTTGATCTACTCCACTACTACTTAGGGAGATAAGATCTGTAATATTCAATCTAT
TCCACTGTTGCCCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGT
AAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAACAT
ATTC
Found at i:55037791 original size:880 final size:877
Alignment explanation
Indices: 55036612--55038213 Score: 2697
Period size: 880 Copynumber: 1.8 Consensus size: 877
55036602 ACCAGAGAGT
* *
55036612 TAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTACCATTTTCGATC
1 TAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCCACCATCTTCGATC
** * *
55036677 TACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGTTGCTCAAGGA
66 TACTCCACTACTGCCTAGGGAGATAAGATCTGTAATATTCAACCTATTCCACTGCTGCTCAAGGA
* * *
55036742 GATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGA
131 GATAGAATTACTGGCCTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCAACTTCGA
* * *
55036807 TCTACTCCACTATTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCTAGG
196 TCTACTCCACTACTACCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGG
*
55036872 GAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACCTCAGGGAGGTAAAATCCGCCATCTTC
261 GAGATAGAATTACTGGCCTCAATGTACTCCACCGTAACCTCAGGGAGGTAAAATCCGCCATCTTC
55036937 GATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACTGCTGCCCA
326 GATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACTGCTGCCCA
*
55037002 GGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTCT
391 GGGAGATAGAATTATGGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTCT
55037067 TAATCCACTCCATTGCAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTT
456 TAATCCACTCCATTGCAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTT
* *
55037132 TAGGGAGATAAGACTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCT
521 TAGGGAGATAAGACTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGA-CTGATAT
* * *
55037197 CTTTGATCTACTTCATGCCA-A-TACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCC
585 CTTCGATCTACTTC--GCCACAGTACAGGAAGACAAGATCTGCTCTCTTCGATCTACTCCACGCC
* * *
55037260 AATACATGAATAGAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTG
648 AATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCC-A-ACATGAAGACAAGATCTG
55037325 CTTTCTTCGATAGATTACACTGCCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTG
711 CTTTCTTCGATAGATTACACTGCCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTG
55037390 TAACCTCAGAGAGGTAAAATCTACCATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATC
776 TAACCTCAGAGAGGTAAAATCTACCATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATC
55037455 TGTAATATTGAATCTATTCCACTGTTGCTCAAGGAGA
841 TGTAATATTGAATCTATTCCACTGTTGCTCAAGGAGA
* * *
55037492 TAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCATCTTCGATC
1 TAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCCACCATCTTCGATC
* * *
55037557 TACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCACCCTATTCCACTGCTGC-CTAGGG
66 TACTCCACTACTGCCTAGGGAGATAAGATCTGTAATATTCAACCTATTCCACTGCTGCTC-AAGG
*
55037621 AGATAGAATTACTGGCCTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCAACTTTG
130 AGATAGAATTACTGGCCTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCAACTTCG
* * *
55037686 ATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTGCCCAG
195 ATCTACTCCACTACTACCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAG
* * *
55037751 GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTT
260 GGAGATAGAATTACTGGCCTCAATGTACTCCACCGTAACCTCAGGGAGGTAAAATCCGCCATCTT
*
55037816 CGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATATATTCCACTGCTGCCC
325 CGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACTGCTGCCC
55037881 AGGGAGATAGAATTATGGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTC
390 AGGGAGATAGAATTATGGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTC
*
55037946 TTAATCCACTCCATTGCAACTTCAAGGAGATAGGATTGGTTACTTTTGTCTGTTCCACTGCTATT
455 TTAATCCACTCCATTGCAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATT
* * *
55038011 TTAGGGAGATAAGACTTATATCTTCGATCTACTTCGCCACCAGTATGGGGAGATAAGACTTATAT
520 TTAGGGAGATAAGACTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGACTGATAT
** * * *
55038076 CTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTCTCTTTGATCTACTTCATGCCA
585 CTTCGATCTACTTCGCCA-CAGTACAGGAAGACAAGATCTGCTCTCTTCGATCTACTCCACGCCA
* *
55038141 ATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAACATGAATAGAAGATCTGCTT
649 ATACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAACATGAAGACAAGATCTGCTT
55038206 TCTTCGAT
714 TCTTCGAT
55038214 CTACTTCACG
Statistics
Matches: 671, Mismatches: 47, Indels: 10
0.92 0.06 0.01
Matches are distributed among these distances:
877 4 0.01
878 27 0.04
879 20 0.03
880 620 0.92
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.30
Consensus pattern (877 bp):
TAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCCACCATCTTCGATC
TACTCCACTACTGCCTAGGGAGATAAGATCTGTAATATTCAACCTATTCCACTGCTGCTCAAGGA
GATAGAATTACTGGCCTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCAACTTCGA
TCTACTCCACTACTACCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGG
GAGATAGAATTACTGGCCTCAATGTACTCCACCGTAACCTCAGGGAGGTAAAATCCGCCATCTTC
GATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACTGCTGCCCA
GGGAGATAGAATTATGGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAGATCTGTGGTCT
TAATCCACTCCATTGCAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACTGCTATTT
TAGGGAGATAAGACTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGACTGATATC
TTCGATCTACTTCGCCACAGTACAGGAAGACAAGATCTGCTCTCTTCGATCTACTCCACGCCAAT
ACATGAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAACATGAAGACAAGATCTGCTTTC
TTCGATAGATTACACTGCCGACCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACC
TCAGAGAGGTAAAATCTACCATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAA
TATTGAATCTATTCCACTGTTGCTCAAGGAGA
Found at i:55037889 original size:748 final size:748
Alignment explanation
Indices: 55035727--55037789 Score: 3811
Period size: 748 Copynumber: 2.8 Consensus size: 748
55035717 ACCAGTATGG
* * * * * * *
55035727 GAAGACAAGATCTGCTCTCTTTGATCTATTTCATGCCAATACATGAAGACAAGATCTGCTTTCTT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAATAGAAGATCTGCTTTCTT
55035792 CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATAGATTACACTGCCGACC
66 CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATAGATTACACTGCCGACC
55035857 AGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTACCATT
131 AGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTACCATT
*
55035922 TTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTACACTGTTGC
196 TTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGTTGC
*
55035987 TCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCA
261 TCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCA
* * * * * *
55036052 ACTTTGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTT
326 TCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
* * *
55036117 GCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGC
391 GCCTAGGGAGATAGAATTACTGGCCTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGC
55036182 CATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACTG
456 CATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACTG
55036247 CTGCCCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAGATCT
521 CTGCCCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAGATCT
55036312 GTGGTCTTAATCCACTCCATTACAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACT
586 GTGGTCTTAATCCACTCCATTACAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACT
55036377 GCTATTTTAGGGAGATAAGACTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGAT
651 GCTATTTTAGGGAGATAAGACTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGAT
55036442 CTGCTCTCTTTGATCTACTTCATGCCAATACAT
716 CTGCTCTCTTTGATCTACTTCATGCCAATACAT
55036475 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAATAGAAGATCTGCTTTCTT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAATAGAAGATCTGCTTTCTT
55036540 CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATAGATTACACTGCCGACC
66 CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATAGATTACACTGCCGACC
55036605 AGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTACCATT
131 AGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTACCATT
55036670 TTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGTTGC
196 TTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGTTGC
55036735 TCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCA
261 TCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCA
*
55036800 TCTTCGATCTACTCCACTATTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
326 TCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
* *
55036865 GCCTAGGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACCTCAGGGAGGTAAAATCCGC
391 GCCTAGGGAGATAGAATTACTGGCCTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGC
55036930 CATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACTG
456 CATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACTG
55036995 CTGCCCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAGATCT
521 CTGCCCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAGATCT
*
55037060 GTGGTCTTAATCCACTCCATTGCAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACT
586 GTGGTCTTAATCCACTCCATTACAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACT
55037125 GCTATTTTAGGGAGATAAGACTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGAT
651 GCTATTTTAGGGAGATAAGACTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGAT
55037190 CTGCTCTCTTTGATCTACTTCATGCCAATACAT
716 CTGCTCTCTTTGATCTACTTCATGCCAATACAT
55037223 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAATAGAAGATCTGCTTTCTT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAATAGAAGATCTGCTTTCTT
55037288 CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATAGATTACACTGCCGACC
66 CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATAGATTACACTGCCGACC
55037353 AGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTACCATT
131 AGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTACCATT
*
55037418 TTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTGAATCTATTCCACTGTTGC
196 TTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGTTGC
55037483 TCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCA
261 TCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCA
**
55037548 TCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCACCCTATTCCACTGCT
326 TCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
*
55037613 GCCTAGGGAGATAGAATTACTGGCCTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCAC
391 GCCTAGGGAGATAGAATTACTGGCCTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGC
* * * * * * *
55037678 CAACTTTGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTG
456 CATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACTG
* *
55037743 TTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAAC
521 CTGCCCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAAC
55037790 CTCAGGGAGG
Statistics
Matches: 1277, Mismatches: 38, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
748 1277 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (748 bp):
GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACATGAATAGAAGATCTGCTTTCTT
CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATAGATTACACTGCCGACC
AGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTACCATT
TTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTCAATCTATTCCACTGTTGC
TCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCA
TCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCT
GCCTAGGGAGATAGAATTACTGGCCTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGC
CATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCATCAATATATTCCACTG
CTGCCCAGGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAGATCT
GTGGTCTTAATCCACTCCATTACAACTTCAAGGAGATAGGATTGGTTACTTCTGTCTGTTCCACT
GCTATTTTAGGGAGATAAGACTTATATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGAT
CTGCTCTCTTTGATCTACTTCATGCCAATACAT
Found at i:55038062 original size:44 final size:44
Alignment explanation
Indices: 55038014--55038112 Score: 180
Period size: 44 Copynumber: 2.2 Consensus size: 44
55038004 TGCTATTTTA
55038014 GGGAGATAAGACTTATATCTTCGATCTACTTCGCCACCAGTATG
1 GGGAGATAAGACTTATATCTTCGATCTACTTCGCCACCAGTATG
55038058 GGGAGATAAGACTTATATCTTCGATCTACTTCGCCACCAGTATG
1 GGGAGATAAGACTTATATCTTCGATCTACTTCGCCACCAGTATG
* *
55038102 GGAAGACAAGA
1 GGGAGATAAGA
55038113 TCTGCTCTCT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 53 1.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (44 bp):
GGGAGATAAGACTTATATCTTCGATCTACTTCGCCACCAGTATG
Found at i:55038202 original size:42 final size:44
Alignment explanation
Indices: 55038103--55038257 Score: 233
Period size: 44 Copynumber: 3.6 Consensus size: 44
55038093 ACCAGTATGG
* * * *
55038103 GAAGACAAGATCTGCTCTCTTTGATCTACTTCATGCCAATACAT
1 GAAGAGAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
* *
55038147 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCC-A-ACAT
1 GAAGAGAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
*
55038189 GAATAGAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
1 GAAGAGAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
55038233 GAAGAGAAGATCTGCTTTCTTCGAT
1 GAAGAGAAGATCTGCTTTCTTCGAT
55038258 AGATTCCACT
Statistics
Matches: 101, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
42 38 0.38
43 2 0.02
44 61 0.60
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.30
Consensus pattern (44 bp):
GAAGAGAAGATCTGCTTTCTTCGATCTACTTCACGCCAATACAT
Found at i:55038266 original size:86 final size:86
Alignment explanation
Indices: 55038109--55038266 Score: 253
Period size: 86 Copynumber: 1.8 Consensus size: 86
55038099 ATGGGAAGAC
* * **
55038109 AAGATCTGCTCTCTTTGATCTACTTCATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT
1 AAGATCTGCTCTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATAG
55038174 ACTCCACGCCAACATGAATAG
66 ACTCCACGCCAACATGAATAG
* *
55038195 AAGATCTGCTTTCTTCGATCTACTTCACGCCAATACATGAAGAGAAGATCTGCTTTCTTCGATAG
1 AAGATCTGCTCTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATAG
*
55038260 ATTCCAC
66 ACTCCAC
55038267 TGCCGACCAG
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
86 65 1.00
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (86 bp):
AAGATCTGCTCTCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATAG
ACTCCACGCCAACATGAATAG
Found at i:55038517 original size:44 final size:44
Alignment explanation
Indices: 55038340--55038547 Score: 115
Period size: 44 Copynumber: 4.7 Consensus size: 44
55038330 ATCTACCATT
** *
55038340 TTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATA
1 TTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATC
* ** * * *
55038384 TT-GAATCTATTCCACTGTTG-CTCAAGGAGAT-AGA-AT-TACTGGC
1 TTCG-ATCTACTCCACTACTGCCT-AGGGAGATAAGATCTGTAAT--C
* * * * * * * **
55038427 TTCAATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCCGCCATC
1 TTCGATCTACTCCACTACT-GCCT-AGGGAGATAAGATCTGTAATC
55038472 TTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATC
1 TTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATC
* * *
55038516 TTC-ACCCTATTCCACTGCTGCCTAGGGAGATA
1 TTCGA-TCTACTCCACTACTGCCTAGGGAGATA
55038548 GAATTACTGG
Statistics
Matches: 119, Mismatches: 33, Indels: 24
0.68 0.19 0.14
Matches are distributed among these distances:
41 3 0.03
42 2 0.02
43 18 0.15
44 74 0.62
45 20 0.17
46 1 0.01
47 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (44 bp):
TTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATC
Found at i:55038568 original size:24 final size:24
Alignment explanation
Indices: 55038541--55038589 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
55038531 TGCTGCCTAG
55038541 GGAGATAGAATTACTGGCCTCAAT
1 GGAGATAGAATTACTGGCCTCAAT
55038565 GGAGATAGAATTACTGGCCTCAAT
1 GGAGATAGAATTACTGGCCTCAAT
55038589 G
1 G
55038590 TACTTCACCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (24 bp):
GGAGATAGAATTACTGGCCTCAAT
Found at i:55038693 original size:156 final size:156
Alignment explanation
Indices: 55038404--55038721 Score: 521
Period size: 156 Copynumber: 2.0 Consensus size: 156
55038394 TCCACTGTTG
* *
55038404 CTCAA-GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGC
1 CTCAATGGAGATAGAATTACTGGCCTCAATGTACTCCACCGTAACCTCAGGGAGGTAAAATCCGC
* * * *
55038468 CATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCACCCTATTCCACTG
66 CATCTTCGATCTACTCCACTACTGCCTAGAGAGATAAGATCTGTAATCATCAACATATTCCACTG
*
55038533 CTGCCTAGGGAGATAGAATTACTGGC
131 CTGCCCAGGGAGATAGAATTACTGGC
* *
55038559 CTCAATGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACCTGAGGGAGGTAAAATCCGC
1 CTCAATGGAGATAGAATTACTGGCCTCAATGTACTCCACCGTAACCTCAGGGAGGTAAAATCCGC
* *
55038624 CATCTTCGATCTACTCCACTACTGCCTAGAGAGATAAGATCTGTAATCATCAATATATTCTACTG
66 CATCTTCGATCTACTCCACTACTGCCTAGAGAGATAAGATCTGTAATCATCAACATATTCCACTG
55038689 CTGCCCAGGGAGATAGAATTACTGGC
131 CTGCCCAGGGAGATAGAATTACTGGC
*
55038715 CTTAATG
1 CTCAATG
55038722 TACTCCACTG
Statistics
Matches: 150, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
155 5 0.03
156 145 0.97
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (156 bp):
CTCAATGGAGATAGAATTACTGGCCTCAATGTACTCCACCGTAACCTCAGGGAGGTAAAATCCGC
CATCTTCGATCTACTCCACTACTGCCTAGAGAGATAAGATCTGTAATCATCAACATATTCCACTG
CTGCCCAGGGAGATAGAATTACTGGC
Found at i:55038832 original size:132 final size:132
Alignment explanation
Indices: 55038565--55038802 Score: 395
Period size: 132 Copynumber: 1.8 Consensus size: 132
55038555 TGGCCTCAAT
* * *
55038565 GGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACCTGAGGGAGGTAAAATCCGCCATCTT
1 GGAGATAGAATTACTGGCCTCAATGTACTCCACCGTAACCTCAGGGAGGTAAAATCCACCATCTT
55038630 CGATCTACTCCACTACTGCCTAGAGAGATAAGATCTGTAATCATCAATATATTCTACTGCTGCCC
66 CGATCTACTCCACTACTGCCTAGAGAGATAAGATCTGTAATCATCAATATATTCTACTGCTGCCC
55038695 AG
131 AG
* *
55038697 GGAGATAGAATTACTGGCCTTAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTT
1 GGAGATAGAATTACTGGCCTCAATGTACTCCACCGTAACCTCAGGGAGGTAAAATCCACCATCTT
* * * *
55038762 TGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT
66 CGATCTACTCCACTACTGCCTAGAGAGATAAGATCTGTAAT
55038803 TTTCAATCTA
Statistics
Matches: 97, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
132 97 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (132 bp):
GGAGATAGAATTACTGGCCTCAATGTACTCCACCGTAACCTCAGGGAGGTAAAATCCACCATCTT
CGATCTACTCCACTACTGCCTAGAGAGATAAGATCTGTAATCATCAATATATTCTACTGCTGCCC
AG
Found at i:55038906 original size:132 final size:131
Alignment explanation
Indices: 55038826--55039771 Score: 1482
Period size: 132 Copynumber: 7.2 Consensus size: 131
55038816 CATATTTTCC
* * * *
55038826 CAGGGAGGTAAAATCCGCCATATTCGATTTACTCCACTACTGCCTAAGGAGATGAGATCTGTAAT
1 CAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAAT
*
55038891 CTTCAATCTATTCCACTG-TTCCTCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
66 CTTCAATCTATTCCACTGCTGCC-CAGGGAGATAGAATTACT-GCTTCAATGTACTCCACTGTAA
55038955 CCT
129 CCT
* ** * * *
55038958 TAGGGAGGTAAAATCTTCCATCTTCGATCTACTCCACTACTACCTAGGGAGATAAAATCTTTAAT
1 CAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAAT
* *
55039023 CTTCAATCTATTCCACTGCTGCTCAGGGAGATAGAATTACTGACCTCAATGTACTCCACTGTAAC
66 CTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTG-CTTCAATGTACTCCACTGTAAC
55039088 CT
130 CT
* * * * **
55039090 CAGGGAGGTAAAATCCACTATCTTTGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTGTAAT
1 CAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAAT
* *
55039155 CTTTAATCTATTCCACTGTTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAAC
66 CTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACT-GCTTCAATGTACTCCACTGTAAC
55039220 CT
130 CT
* *
55039222 CAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCATTACTGCCTAGGGAGATAAAATCTGTAAT
1 CAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAAT
* *
55039287 ATTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTATAAC
66 CTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACT-GCTTCAATGTACTCCACTGTAAC
55039352 CT
130 CT
* *
55039354 CAGGGAGGTAAAATCTGCCATCTTCGATCTACTCTACTACTGCCTAGGGAGATAAGATCTGTAAT
1 CAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAAT
55039419 CTTCAATCTATTCCACTGCTAG-CCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAA
66 CTTCAATCTATTCCACTGCT-GCCCAGGGAGATAGAATTACT-GCTTCAATGTACTCCACTGTAA
55039483 CCT
129 CCT
55039486 CAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAAT
1 CAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAAT
*
55039551 CTTCAATCTATTCCACTACTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAAC
66 CTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACT-GCTTCAATGTACTCCACTGTAAC
55039616 CT
130 CT
* * *
55039618 CAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTATTACCTAGGGAGATAAGATCTGTAAT
1 CAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAAT
* * *
55039683 CTTCAATCTATTCAACTGTTTCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAAC
66 CTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACT-GCTTCAATGTACTCCACTGTAAC
55039748 CT
130 CT
*
55039750 CAGGGAGGTAAAATCTGCCATC
1 CAGGGAGGTAAAATCCGCCATC
55039772 AACCTGCTCC
Statistics
Matches: 751, Mismatches: 58, Indels: 10
0.92 0.07 0.01
Matches are distributed among these distances:
131 2 0.00
132 745 0.99
133 4 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (131 bp):
CAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAAT
CTTCAATCTATTCCACTGCTGCCCAGGGAGATAGAATTACTGCTTCAATGTACTCCACTGTAACC
T
Found at i:55038918 original size:88 final size:88
Alignment explanation
Indices: 55038725--55039712 Score: 289
Period size: 88 Copynumber: 11.2 Consensus size: 88
55038715 CTTAATGTAC
* * * * * *
55038725 TCCACTGTAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGA
1 TCCACTGT-TCCTCAGGGAGGTAAAATCCACCATATTCGATCTACTCCACTACTGCCTAAGGAGA
*
55038790 TAAGATCTGTAATTTTCAATCTAT
65 TAAGATCTGTAATCTTCAATCTAT
* * * *
55038814 TCCATATTTTCC-CAGGGAGGTAAAATCCGCCATATTCGATTTACTCCACTACTGCCTAAGGAGA
1 TCCA-CTGTTCCTCAGGGAGGTAAAATCCACCATATTCGATCTACTCCACTACTGCCTAAGGAGA
*
55038878 TGAGATCTGTAATCTTCAATCTAT
65 TAAGATCTGTAATCTTCAATCTAT
* * * **** * * * * *
55038902 TCCACTGTTCCTCAGGGAGATAGAAT-TACTGGCTTCAATGTACTCCACT-GTAACCTTAGGGAG
1 TCCACTGTTCCTCAGGGAGGTAAAATCCACCATATTCGATCTACTCCACTACT-GCC-TAAGGAG
* * * * *
55038965 GTAAAATCT-TCCATCTTCGATCTAC
64 ATAAGATCTGT-AATCTTCAATCTAT
* * * **** * * * * *
55038990 TCCACTACTACCT-AGGGAGATAAAATCTTTAATCTTCAATCTATTCCACTGCTG-CTCAGGGAG
1 TCCACT-GTTCCTCAGGGAGGTAAAATCCACCATATTCGATCTACTCCACTACTGCCT-AAGGAG
* * *
55039053 AT-AGAATTACTG--A-CCTCAATGTAC
64 ATAAG-A-T-CTGTAATCTTCAATCTAT
* * * * * ** *
55039077 TCCACTGTAACCTCAGGGAGGTAAAATCCACTATCTTTGATCTGCTCCACTACTGTTTAGGGAGA
1 TCCACTGT-TCCTCAGGGAGGTAAAATCCACCATATTCGATCTACTCCACTACTGCCTAAGGAGA
*
55039142 TAAGATCTGTAATCTTTAATCTAT
65 TAAGATCTGTAATCTTCAATCTAT
* * * **** * * * * *
55039166 TCCACTGTTGCC-CAGGGAGATAGAAT-TACTGGCTTCAATGTACTCCACT-GTAACCTCAGGGA
1 TCCACTGTT-CCTCAGGGAGGTAAAATCCACCATATTCGATCTACTCCACTACT-GCCT-AAGGA
* * * ** * *
55039228 GGTAAAATCCGCCATCTTCGATCTAC
63 GATAAGATCTGTAATCTTCAATCTAT
* * * * **** * * * * *
55039254 TCCATTACTGCCT-AGGGAGATAAAATCTGTAATATTCAATCTATTCCACTGCTGCCCAGGGAGA
1 TCCACT-GTTCCTCAGGGAGGTAAAATCCACCATATTCGATCTACTCCACTACTGCCTAAGGAGA
* * * *
55039318 T-AGA-AT-TACTAGCTTCAATGTAC
65 TAAGATCTGTA--ATCTTCAATCTAT
* * ** * * *
55039341 TCCACTATAACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCTACTACTGCCTAGGGAGA
1 TCCACTGT-TCCTCAGGGAGGTAAAATCCACCATATTCGATCTACTCCACTACTGCCTAAGGAGA
55039406 TAAGATCTGTAATCTTCAATCTAT
65 TAAGATCTGTAATCTTCAATCTAT
** * * * **** * * * * *
55039430 TCCACTGCTAGC-CAGGGAGATAGAAT-TACTGGCTTCAATGTACTCCACT-GTAACCTCAGGGA
1 TCCACTG-TTCCTCAGGGAGGTAAAATCCACCATATTCGATCTACTCCACTACT-GCCT-AAGGA
* * * ** * *
55039492 GGTAAAATCCGCCATCTTCGATCTAC
63 GATAAGATCTGTAATCTTCAATCTAT
* * * * **** * * * * *
55039518 TCCACTACTGCCT-AGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTACTGCCCAGGGAGA
1 TCCACT-GTTCCTCAGGGAGGTAAAATCCACCATATTCGATCTACTCCACTACTGCCTAAGGAGA
* * * *
55039582 T-AGA-AT-TACTGGCTTCAATGTAC
65 TAAGATCTGTAAT--CTTCAATCTAT
* ** * * * *
55039605 TCCACTGTAACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTATTACCTAGGGAGA
1 TCCACTGT-TCCTCAGGGAGGTAAAATCCACCATATTCGATCTACTCCACTACTGCCTAAGGAGA
55039670 TAAGATCTGTAATCTTCAATCTAT
65 TAAGATCTGTAATCTTCAATCTAT
*
55039694 TCAACTGTTTCC-CAGGGAG
1 TCCACTG-TTCCTCAGGGAG
55039713 ATAGAATTAC
Statistics
Matches: 661, Mismatches: 189, Indels: 99
0.70 0.20 0.10
Matches are distributed among these distances:
85 1 0.00
86 9 0.01
87 120 0.18
88 391 0.59
89 124 0.19
90 11 0.02
91 5 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (88 bp):
TCCACTGTTCCTCAGGGAGGTAAAATCCACCATATTCGATCTACTCCACTACTGCCTAAGGAGAT
AAGATCTGTAATCTTCAATCTAT
Found at i:55038947 original size:220 final size:220
Alignment explanation
Indices: 55038607--55039037 Score: 661
Period size: 220 Copynumber: 2.0 Consensus size: 220
55038597 CCGTAACCTG
*
55038607 AGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGAGAGATAAGATCTGTAATC
1 AGGGAGGTAAAATCCGCCATATTCGATCTACTCCACTACTGCCTAGAGAGATAAGATCTGTAATC
*
55038672 ATCAATATATTCTACTGCTGCCCAGGGAGATAGAATTACTGGCCTTAATGTACTCCACTGTAACC
66 ATCAATATATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCCTTAATGTACTCCACTGTAACC
* * * * *
55038737 TCAGGGAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAA
131 TCAGGGAGGTAAAATCCACCATCTTCGATCTACTCCACTACTACCTAGGGAGATAAAATCTGTAA
*
55038802 TTTTCAATCTATTCCATATTTTCCC
196 TCTTCAATCTATTCCATATTTTCCC
* *
55038827 AGGGAGGTAAAATCCGCCATATTCGATTTACTCCACTACTGCCTA-AGGAGATGAGATCTGTAAT
1 AGGGAGGTAAAATCCGCCATATTCGATCTACTCCACTACTGCCTAGA-GAGATAAGATCTGTAAT
* * *
55038891 CTTCAATCTATTCCACTG-TTCCTCAGGGAGATAGAATTACTGG-CTTCAATGTACTCCACTGTA
65 CATCAATATATTCCACTGCTGCC-CAGGGAGATAGAATTACTGGCCTT-AATGTACTCCACTGTA
* ** *
55038954 ACCTTAGGGAGGTAAAATCTTCCATCTTCGATCTACTCCACTACTACCTAGGGAGATAAAATCTT
128 ACCTCAGGGAGGTAAAATCCACCATCTTCGATCTACTCCACTACTACCTAGGGAGATAAAATCTG
55039019 TAATCTTCAATCTATTCCA
193 TAATCTTCAATCTATTCCA
55039038 CTGCTGCTCA
Statistics
Matches: 191, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
219 7 0.04
220 184 0.96
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (220 bp):
AGGGAGGTAAAATCCGCCATATTCGATCTACTCCACTACTGCCTAGAGAGATAAGATCTGTAATC
ATCAATATATTCCACTGCTGCCCAGGGAGATAGAATTACTGGCCTTAATGTACTCCACTGTAACC
TCAGGGAGGTAAAATCCACCATCTTCGATCTACTCCACTACTACCTAGGGAGATAAAATCTGTAA
TCTTCAATCTATTCCATATTTTCCC
Found at i:55039273 original size:352 final size:350
Alignment explanation
Indices: 55038565--55039275 Score: 946
Period size: 352 Copynumber: 2.0 Consensus size: 350
55038555 TGGCCTCAAT
*
55038565 GGAGATAGAATTACTGGCCTCAATGTACTTCACCGTAACCTGAGGGAGGTAAAATCCGCCATCTT
1 GGAGATAGAATTACTGGCCTCAATGTACTCCACCGTAACCTGAGGGAGGTAAAATCCGCCATCTT
* * *
55038630 CGATCTACTCCACTACTGCCTAGAGAGATAAGATCTGTAATCATCAATATATTCTACTGCTGCCC
66 CGATCTACTCCACTACTACCTAGAGAGATAAAATCTGTAATCATCAATATATTCCACTGCTGCCC
* *
55038695 AGGGAGATAGAATTACTGGCCTTAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATC
131 AGGGAGATAGAATTACTGACCTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATC
* *
55038760 TTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAATCTATTCCATATTTTC
196 TTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAATCTATTCCATAGTTGC
* * * * * * * *
55038825 CCAGGGAGGTAAAATCCGCCATATTCGATTTACTCCACTACTGCCTAAGGAGATGAGATCTGTAA
261 CCAGGGAGATAAAATCCGCC--ATTCAATGTACTCCACTACTACCTAAGGAGATAAAATCCGCAA
* * *
55038890 TCTTCAATCTATTCCACTGTTCCTCAG
324 TCTTCAATCTACTCCACTCTGCCTCAG
* * * **
55038917 GGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTTAGGGAGGTAAAATCTTCCATCTT
1 GGAGATAGAATTACTGGCCTCAATGTACTCCACCGTAACCTGAGGGAGGTAAAATCCGCCATCTT
* * * * *
55038982 CGATCTACTCCACTACTACCTAGGGAGATAAAATCTTTAATCTTCAATCTATTCCACTGCTGCTC
66 CGATCTACTCCACTACTACCTAGAGAGATAAAATCTGTAATCATCAATATATTCCACTGCTGCCC
*
55039047 AGGGAGATAGAATTACTGACCTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACTATC
131 AGGGAGATAGAATTACTGACCTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATC
*
55039112 TTTGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTGTAATCTTT-AATCTATTCCACT-GTT
196 TTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TTTCAATCTATTCCA-TAGTT
* * * * * *
55039175 GCCCAGGGAGATAGAATTACTGGC-TTCAATGTACTCCACT-GTAACCTCAGGGAGGTAAAATCC
259 GCCCAGGGAGATA-AAAT-CCGCCATTCAATGTACTCCACTACT-ACCT-AAGGAGATAAAATCC
* * *
55039238 GCCATCTTCGATCTACTCCATTACTGCCT-AG
320 GCAATCTTCAATCTACTCCACT-CTGCCTCAG
55039269 GGAGATA
1 GGAGATA
55039276 AAATCTGTAA
Statistics
Matches: 312, Mismatches: 40, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
350 1 0.00
351 17 0.05
352 280 0.90
353 11 0.04
354 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (350 bp):
GGAGATAGAATTACTGGCCTCAATGTACTCCACCGTAACCTGAGGGAGGTAAAATCCGCCATCTT
CGATCTACTCCACTACTACCTAGAGAGATAAAATCTGTAATCATCAATATATTCCACTGCTGCCC
AGGGAGATAGAATTACTGACCTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCACCATC
TTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAATCTATTCCATAGTTGC
CCAGGGAGATAAAATCCGCCATTCAATGTACTCCACTACTACCTAAGGAGATAAAATCCGCAATC
TTCAATCTACTCCACTCTGCCTCAG
Found at i:55039721 original size:396 final size:395
Alignment explanation
Indices: 55037351--55038817 Score: 952
Period size: 396 Copynumber: 3.7 Consensus size: 395
55037341 ACACTGCCGA
* * * * *
55037351 CCAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAGGTAAAATCTACCA
1 CCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCA
* *** * * * *
55037416 TTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTGAATCTATTCCACTGTT
66 TCTTCGATCTACTCCACTACTACCTAGGGAGATAAAATCTGTAATCTTCAATCTATTCCACTGCT
* * * *
55037481 GCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGC
131 GCTCAGGGAGATAGAATTACTGACCTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCAC
** *
55037546 CATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCACCCTATTCCACTG
196 CATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTA
* *
55037611 CTGCCTAGGGAGATAGAATTACTGGCCTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCC
261 CTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCC
* * * * * *
55037676 ACCAACTTTGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCAC
326 GCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCAC
55037741 TGTTGC
391 TGTT-C
55037747 CCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCA
1 CCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCA
* * *
55037812 TCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATATATTCCACTGCT
66 TCTTCGATCTACTCCACTACTACCTAGGGAGATAAAATCTGTAATCTTCAATCTATTCCACTGCT
* * * * * * * * * **
55037877 GCCCAGGGAGATAGAATTA-TGGGCTTCAATGTACTCCACTGTAACTTTAGAGAGATGAGATCTG
131 GCTCAGGGAGATAGAATTACT-GACCTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCA
*** * * * * ** * * * * *** *
55037941 TGGTCTT-AATCCACTCCATTGCAACTTCAAGGAGATAGGAT-TGGTTA-CTTTTGTCTGTTCCA
195 CCATCTTCGATCTACTCCACTACTGCCT-AGGGAGATAAGATCT-GTAATCTTCAATCTATTCCA
* **** * ** * * * *
55038003 CTGCTATTTTAGGGAGATAAGACTTA-TATCTTCGATCTACTTCGCCACCAGT-A--T-GGGGAG
258 CTACT-GCCCAGGGAGAT-AGAATTACTGGCTTCAATGTAC-T--CCA-CTGTAACCTCAGGGAG
* * **** * * * * * *
55038063 ATAAGA-CTTATATCTTCGATCTACTTCGCCAC--CAGTATGGGAAGACAAGATCTGCT-CTCTT
317 GTAAAATCCGCCATCTTCGATCTACTCCACTACTGC-CTA-GGG-AGATAAGATCTG-TAATCTT
**
55038124 TGATCTACTT-CA-TG--C
378 CAATCTA-TTCCACTGTTC
* * * * ** * * * * * ** *
55038139 CAATACATGAAGACA-AGATCTGCTTTCTTCGATCTACTCCAC-GCCAACATGA-ATA-G-AAGA
1 C----CAGGGAGATAGA-AT-TACTGGCTTCAATGTACTCCACTG-TAACCTCAGGGAGGTAAAA
** * * * * * * * * * **
55038199 TCTGCTTTCTTCGATCTACTTCACGCCAATA-C-ATGAAGAGAAGATCTGCT-TTCTTCGATAGA
59 TCTGCCATCTTCGATCTAC-TC-CACTACTACCTAGGGAGATAAAATCTG-TAATCTTCAATCTA
* * * * * * *
55038261 TTCCACTGCCGAC-CAGAGAGTTAGAATTACTGGCTTCAATATACTCCACTGTAACCTCAGAGAG
121 TTCCACTGCTG-CTCAGGGAGATAGAATTACTGACCTCAATGTACTCCACTGTAACCTCAGGGAG
* * ** * *
55038325 GTAAAATCTACCATTTTCGATCTACTCCACTACTGTTTAGGGAGATAAGATCTGTAATATTGAAT
185 GTAAAATCCACCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAAT
** * *
55038390 CTATTCCACTGTTGCTCAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGG
250 CTATTCCACTACTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGG
55038455 AGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
315 AGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCA
** *
55038520 CCCTATTCCACTGCTGC
380 ATCTATTCCACTG-TTC
* *
55038537 CTAGGGAGATAGAATTACTGGCCTCAATGGAGATAGAATTACTGGCCTCAATGTACTTCACCGTA
1 CCAGGGAGATAGAATTACTGG-CT---T-CA-AT-G---TACT---C-C-----AC-T----GTA
* * * * *
55038602 ACCTGAGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTACTGCCTAGAGAGATAAGATCTG
42 ACCTCAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCACTACTACCTAGGGAGATAAAATCTG
* * * * * *
55038667 TAATCATCAATATATTCTACTGCTGCCCAGGGAGATAGAATTACTGGCCTTAATGTACTCCACTG
107 TAATCTTCAATCTATTCCACTGCTGCTCAGGGAGATAGAATTACTGACCTCAATGTACTCCACTG
* * *
55038732 TAACCTCAGGGAGGTAAAATCCACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATC
172 TAACCTCAGGGAGGTAAAATCCACCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATC
*
55038797 TGTAATTTTCAATCTATTCCA
237 TGTAATCTTCAATCTATTCCA
55038818 TATTTTCCCA
Statistics
Matches: 800, Mismatches: 195, Indels: 128
0.71 0.17 0.11
Matches are distributed among these distances:
390 3 0.00
391 4 0.00
392 2 0.00
393 15 0.02
394 178 0.22
395 112 0.14
396 255 0.32
397 35 0.04
398 2 0.00
399 6 0.01
400 3 0.00
403 4 0.00
406 1 0.00
407 1 0.00
412 2 0.00
417 6 0.01
418 6 0.01
419 6 0.01
420 159 0.20
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (395 bp):
CCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCTGCCA
TCTTCGATCTACTCCACTACTACCTAGGGAGATAAAATCTGTAATCTTCAATCTATTCCACTGCT
GCTCAGGGAGATAGAATTACTGACCTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCAC
CATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTA
CTGCCCAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCC
GCCATCTTCGATCTACTCCACTACTGCCTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCAC
TGTTC
Found at i:55041010 original size:8 final size:7
Alignment explanation
Indices: 55040975--55041007 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
55040965 TCCATTTTAC
55040975 TTTTTCA
1 TTTTTCA
55040982 TTTTTCA
1 TTTTTCA
55040989 TTTTT-A
1 TTTTTCA
55040995 TCTTTTCA
1 T-TTTTCA
55041003 TTTTT
1 TTTTT
55041008 TCACATCGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 2 0.08
7 20 0.83
8 2 0.08
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTTCA
Found at i:55050646 original size:14 final size:13
Alignment explanation
Indices: 55050615--55050714 Score: 52
Period size: 12 Copynumber: 7.8 Consensus size: 13
55050605 TACATTTATG
55050615 ACTTGATT-AAAA
1 ACTTGATTAAAAA
55050627 ACTTGATTAAAAA
1 ACTTGATTAAAAA
*
55050640 CACTTGA-TGAAAA
1 -ACTTGATTAAAAA
*
55050653 GCTT-A--AAAAGA
1 ACTTGATTAAAA-A
**
55050664 ACTTGA-TGCAAA
1 ACTTGATTAAAAA
*
55050676 ACTT-AATAAAAA
1 ACTTGATTAAAAA
55050688 ACTTGGTAATTAAAAAA
1 ACTT-G--ATT-AAAAA
55050705 ACTTGATTAA
1 ACTTGATTAA
55050715 TGACTTGATG
Statistics
Matches: 68, Mismatches: 9, Indels: 21
0.69 0.09 0.21
Matches are distributed among these distances:
10 3 0.04
11 6 0.09
12 25 0.37
13 13 0.19
14 9 0.13
16 3 0.04
17 9 0.13
ACGTcount: A:0.51, C:0.10, G:0.11, T:0.28
Consensus pattern (13 bp):
ACTTGATTAAAAA
Found at i:55050658 original size:22 final size:23
Alignment explanation
Indices: 55050633--55050692 Score: 70
Period size: 23 Copynumber: 2.6 Consensus size: 23
55050623 AAAAACTTGA
*
55050633 TTAAAAA-CACTTGATG-AAAAGC
1 TTAAAAAGAACTTGATGCAAAA-C
55050655 TTAAAAAGAACTTGATGCAAAAC
1 TTAAAAAGAACTTGATGCAAAAC
*
55050678 TTAATAAAAAACTTG
1 TTAA-AAAGAACTTG
55050693 GTAATTAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
22 7 0.21
23 13 0.39
24 13 0.39
ACGTcount: A:0.52, C:0.12, G:0.12, T:0.25
Consensus pattern (23 bp):
TTAAAAAGAACTTGATGCAAAAC
Found at i:55051233 original size:2 final size:2
Alignment explanation
Indices: 55051226--55051256 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
55051216 TCTTAAGTTT
55051226 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
55051257 CATTATTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:55053258 original size:20 final size:22
Alignment explanation
Indices: 55053217--55053258 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
55053207 TGTAGAAACT
55053217 TATGCTCAAAATAAATGAAAAA
1 TATGCTCAAAATAAATGAAAAA
*
55053239 TATGCTCCAAA-AAA-GAAAAA
1 TATGCTCAAAATAAATGAAAAA
55053259 GAAAAGAGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
21 3 0.16
22 10 0.53
ACGTcount: A:0.60, C:0.12, G:0.10, T:0.19
Consensus pattern (22 bp):
TATGCTCAAAATAAATGAAAAA
Found at i:55054356 original size:100 final size:99
Alignment explanation
Indices: 55054202--55054775 Score: 727
Period size: 100 Copynumber: 5.7 Consensus size: 99
55054192 GTCGTCATGA
* * ** * * * * * *
55054202 CTTCAATCTATTCCACTACACTACCAGGGAAGTAAGATTCGCCTTTGTGACTTCAATCTTTTAGA
1 CTTCAATCTGTTCCACTGCACCGCCAAGGAGGTAAGATCCGCCGTTGTGGCTTCAATCTTTTAAA
* **
55054267 TCGCAATGTAGGGGAAACCAGATATGCCATCGTAG
66 TCGTAATGT-GGGGAAACCAGATCCGCCATCGTAG
* * *
55054302 -TTATAATCTGTTCCGCTGCATCGCCAAGGAGGTAAGATCCGCCGTTGTGGCTTCAATCTTTTAA
1 CTT-CAATCTGTTCCACTGCACCGCCAAGGAGGTAAGATCCGCCGTTGTGGCTTCAATCTTTTAA
* *
55054366 ATCGTAATGTTGGGAGAACCAGATCCACCATCGTAG
65 ATCGTAATGTGGGGA-AACCAGATCCGCCATCGTAG
* * *
55054402 CTTCAATCTGTTCCTCTGCACCGCCAAGGAGATAAGATCCGCTGTTGTGGCTTCAATCTTTTAAA
1 CTTCAATCTGTTCCACTGCACCGCCAAGGAGGTAAGATCCGCCGTTGTGGCTTCAATCTTTTAAA
* **
55054467 TTGTAATGTCGGGGAAACCAGATCCGCTGTCGTAG
66 TCGTAATGT-GGGGAAACCAGATCCGCCATCGTAG
* * * *
55054502 CTTCAATCTGTTCCACTGCACCACTAAGGAGGTAAGATCCGTCGTTATGGCTTCAATCTTTTAAA
1 CTTCAATCTGTTCCACTGCACCGCCAAGGAGGTAAGATCCGCCGTTGTGGCTTCAATCTTTTAAA
* * * *
55054567 TCGTGATGTCGGGAGAACTAGATCCGCCGTCGTAG
66 TCGTAATGTGGGGA-AACCAGATCCGCCATCGTAG
* *
55054602 CTTCAATCTGTTCCACTGCACCGTCAAGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTAAA
1 CTTCAATCTGTTCCACTGCACCGCCAAGGAGGTAAGATCCGCCGTTGTGGCTTCAATCTTTTAAA
* *
55054667 TTGTAATGTTGGGGAAACCAGATCCGCTATCGTAG
66 TCGTAATG-TGGGGAAACCAGATCCGCCATCGTAG
* * * *
55054702 CTTCAATCTGTTCCATTGCACCACCAGGGAGGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAA
1 CTTCAATCTGTTCCACTGCACCGCCAAGGAGGTAAGATCCGCCGTTGTGGCTTCAATCTTTTAAA
55054767 TCGTAATGT
66 TCGTAATGT
55054776 CGAAGAGATA
Statistics
Matches: 409, Mismatches: 59, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
99 11 0.03
100 387 0.95
101 11 0.03
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (99 bp):
CTTCAATCTGTTCCACTGCACCGCCAAGGAGGTAAGATCCGCCGTTGTGGCTTCAATCTTTTAAA
TCGTAATGTGGGGAAACCAGATCCGCCATCGTAG
Found at i:55054555 original size:200 final size:200
Alignment explanation
Indices: 55054202--55054777 Score: 805
Period size: 200 Copynumber: 2.9 Consensus size: 200
55054192 GTCGTCATGA
* * ** * * * * *
55054202 CTTCAATCTATTCCACTACACTACCAGGGAAGTAAGATTCGCCTTTGTGACTTCAATCTTTTAGA
1 CTTCAATCTGTTCCACTGCACCGCCAAGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTAAA
* * ** * * * * *
55054267 TCGCAATGTAGGGGAAACCAGATATGCCATCGTAG-TTATAATCTGTTCCGCTGCATCGCCAAGG
66 TTGTAATGTAGGGGAAACCAGATCCGCTATCGTAGCTT-CAATCTGTTCCACTGCACCACCAAGG
*
55054331 AGGTAAGATCCGCCGTTGTGGCTTCAATCTTTTAAATCGTAATGTTGGGAGAACCAGATCCACCA
130 AGGTAAGATCCGCCGTTGTGGCTTCAATCTTTTAAATCGTAATGTCGGGAGAACCAGATCCACCA
55054396 TCGTAG
195 TCGTAG
* *
55054402 CTTCAATCTGTTCCTCTGCACCGCCAAGG-AGATAAGATCCGCTGTTGTGGCTTCAATCTTTTAA
1 CTTCAATCTGTTCCACTGCACCGCCAAGGAAG-TAAGATCCGCCGTTGTGGCTTCAATCTTTTAA
* * *
55054466 ATTGTAATGTCGGGGAAACCAGATCCGCTGTCGTAGCTTCAATCTGTTCCACTGCACCACTAAGG
65 ATTGTAATGTAGGGGAAACCAGATCCGCTATCGTAGCTTCAATCTGTTCCACTGCACCACCAAGG
* * * * * *
55054531 AGGTAAGATCCGTCGTTATGGCTTCAATCTTTTAAATCGTGATGTCGGGAGAACTAGATCCGCCG
130 AGGTAAGATCCGCCGTTGTGGCTTCAATCTTTTAAATCGTAATGTCGGGAGAACCAGATCCACCA
55054596 TCGTAG
195 TCGTAG
*
55054602 CTTCAATCTGTTCCACTGCACCGTCAAGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTAAA
1 CTTCAATCTGTTCCACTGCACCGCCAAGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTAAA
* * *
55054667 TTGTAATGTTGGGGAAACCAGATCCGCTATCGTAGCTTCAATCTGTTCCATTGCACCACCAGGGA
66 TTGTAATGTAGGGGAAACCAGATCCGCTATCGTAGCTTCAATCTGTTCCACTGCACCACCAAGGA
*
55054732 GGTAAGATTCGCCGTTGTGGCTTCAATCTTTTAAATCGTAATGTCG
131 GGTAAGATCCGCCGTTGTGGCTTCAATCTTTTAAATCGTAATGTCG
55054778 AAGAGATAGG
Statistics
Matches: 331, Mismatches: 42, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
199 2 0.01
200 325 0.98
201 4 0.01
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (200 bp):
CTTCAATCTGTTCCACTGCACCGCCAAGGAAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTAAA
TTGTAATGTAGGGGAAACCAGATCCGCTATCGTAGCTTCAATCTGTTCCACTGCACCACCAAGGA
GGTAAGATCCGCCGTTGTGGCTTCAATCTTTTAAATCGTAATGTCGGGAGAACCAGATCCACCAT
CGTAG
Found at i:55054690 original size:50 final size:50
Alignment explanation
Indices: 55054335--55054775 Score: 150
Period size: 50 Copynumber: 8.8 Consensus size: 50
55054325 CCAAGGAGGT
*
55054335 AAGATCCGCCGTTGTGGCTTCAATCTTTTAAATCGTAATGTT-GGGAGAAC
1 AAGATCCGCCGTTGTGGCTTCAATCTTTTAAATTGTAATGTTAGGGA-AAC
* * * * * * ** * ** ** * * *
55054385 CAGATCCACCATCGTAGCTTCAATCTGTT-CCTCTGCACCGCCAAGGAGAT
1 AAGATCCGCCGTTGTGGCTTCAATCTTTTAAAT-TGTAATGTTAGGGAAAC
* **
55054435 AAGATCCGCTGTTGTGGCTTCAATCTTTTAAATTGTAATGTCGGGGAAAC
1 AAGATCCGCCGTTGTGGCTTCAATCTTTTAAATTGTAATGTTAGGGAAAC
* * * * * ** * * **** * ***
55054485 CAGATCCGCTGTCGTAGCTTCAATCTGTTCCACTGCACCACTAAGGAGGT
1 AAGATCCGCCGTTGTGGCTTCAATCTTTTAAATTGTAATGTTAGGGAAAC
* * * * *
55054535 AAGATCCGTCGTTATGGCTTCAATCTTTTAAATCGTGATG-TCGGGAGAAC
1 AAGATCCGCCGTTGTGGCTTCAATCTTTTAAATTGTAATGTTAGGGA-AAC
* * * * ** * * ** * * **
55054585 TAGATCCGCCGTCGTAGCTTCAATCTGTTCCACTGCACCGTCAAGGAAGT
1 AAGATCCGCCGTTGTGGCTTCAATCTTTTAAATTGTAATGTTAGGGAAAC
*
55054635 AAGATCCGCCGTTGTGGCTTCAATCTTTTAAATTGTAATGTTGGGGAAAC
1 AAGATCCGCCGTTGTGGCTTCAATCTTTTAAATTGTAATGTTAGGGAAAC
* ** * * * ** * ***** ***
55054685 CAGATCCGCTATCGTAGCTTCAATCTGTTCCATTGCACCACCAGGGAGGT
1 AAGATCCGCCGTTGTGGCTTCAATCTTTTAAATTGTAATGTTAGGGAAAC
* *
55054735 AAGATTCGCCGTTGTGGCTTCAATCTTTTAAATCGTAATGT
1 AAGATCCGCCGTTGTGGCTTCAATCTTTTAAATTGTAATGT
55054776 CGAAGAGATA
Statistics
Matches: 246, Mismatches: 140, Indels: 10
0.62 0.35 0.03
Matches are distributed among these distances:
49 5 0.02
50 234 0.95
51 7 0.03
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.30
Consensus pattern (50 bp):
AAGATCCGCCGTTGTGGCTTCAATCTTTTAAATTGTAATGTTAGGGAAAC
Found at i:55056183 original size:7 final size:7
Alignment explanation
Indices: 55056167--55056199 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
55056157 CCATTTCTAC
55056167 TTTTTCCA
1 TTTTT-CA
55056175 TTTTTCA
1 TTTTTCA
55056182 TTTTTCA
1 TTTTTCA
55056189 -TTTTCA
1 TTTTTCA
55056195 TTTTT
1 TTTTT
55056200 TCGCATCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 6 0.25
7 13 0.54
8 5 0.21
ACGTcount: A:0.12, C:0.15, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTTTCA
Found at i:55056755 original size:9 final size:9
Alignment explanation
Indices: 55056743--55056813 Score: 54
Period size: 9 Copynumber: 7.6 Consensus size: 9
55056733 TCTTTTTTCC
55056743 TTTTTTTTA
1 TTTTTTTTA
*
55056752 TTTTTTTTGT
1 TTTTTTTT-A
*
55056762 TTTTGTTTTT
1 TTTT-TTTTA
55056772 TTGTTTTGTTA
1 TT-TTTT-TTA
*
55056783 TTTTTATTA
1 TTTTTTTTA
*
55056792 TTTTGTTTA
1 TTTTTTTTA
*
55056801 TTATTTTT-
1 TTTTTTTTA
55056809 TTTTT
1 TTTTT
55056814 GCATTGAATC
Statistics
Matches: 50, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
8 4 0.08
9 24 0.48
10 12 0.24
11 10 0.20
ACGTcount: A:0.08, C:0.00, G:0.07, T:0.85
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:55056770 original size:14 final size:13
Alignment explanation
Indices: 55056753--55056787 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 13
55056743 TTTTTTTTAT
55056753 TTTTTTTGTTTTTG
1 TTTTTTTG-TTTTG
55056767 TTTTTTTGTTTTG
1 TTTTTTTGTTTTG
55056780 TTATTTTT
1 TT-TTTTT
55056788 ATTATTTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 7 0.35
14 13 0.65
ACGTcount: A:0.03, C:0.00, G:0.11, T:0.86
Consensus pattern (13 bp):
TTTTTTTGTTTTG
Found at i:55056778 original size:22 final size:22
Alignment explanation
Indices: 55056761--55056813 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
55056751 ATTTTTTTTG
*
55056761 TTTTTGTTTTTTTGTTTTGTTA
1 TTTTTATTTTTTTGTTTTGTTA
* *
55056783 TTTTTATTATTTTG-TTTATTA
1 TTTTTATTTTTTTGTTTTGTTA
55056804 TTTTT-TTTTT
1 TTTTTATTTTT
55056814 GCATTGAATC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 4 0.15
21 11 0.41
22 12 0.44
ACGTcount: A:0.09, C:0.00, G:0.08, T:0.83
Consensus pattern (22 bp):
TTTTTATTTTTTTGTTTTGTTA
Found at i:55061208 original size:3 final size:3
Alignment explanation
Indices: 55061200--55061242 Score: 68
Period size: 3 Copynumber: 14.3 Consensus size: 3
55061190 ATGCATAAAT
* *
55061200 ATA ATA ATA AGA ATA ATA ATA ATA ATG ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
55061243 CAATTCAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:55064535 original size:2 final size:2
Alignment explanation
Indices: 55064528--55064560 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
55064518 CATGTTTATT
55064528 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
55064561 TTTTGCCTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:55065714 original size:20 final size:22
Alignment explanation
Indices: 55065673--55065714 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
55065663 TGTAGAAACT
55065673 TATGCTCAAAATAAATGAAAAA
1 TATGCTCAAAATAAATGAAAAA
*
55065695 TATGCTCCAAA-AAA-GAAAAA
1 TATGCTCAAAATAAATGAAAAA
55065715 GAAAAGAGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
21 3 0.16
22 10 0.53
ACGTcount: A:0.60, C:0.12, G:0.10, T:0.19
Consensus pattern (22 bp):
TATGCTCAAAATAAATGAAAAA
Found at i:55065974 original size:348 final size:348
Alignment explanation
Indices: 55065332--55066023 Score: 1217
Period size: 348 Copynumber: 2.0 Consensus size: 348
55065322 GAGAGAAAAG
*
55065332 AAAAAAAATGAACAATATGCTCAAAATAAGAAAAAGAAAAGAGCATAACATTAATGCCTCAAAAT
1 AAAAAAAATGAAAAATATGCTCAAAATAAGAAAAAGAAAAGAGCATAACATTAATGCCTCAAAAT
*
55065397 CATAGTGCACAAAAATAAGCTAATATCAAGTCAGCTCTTCCACATTGTTGGAGAGATAAGAAATG
66 CATAGTGCACAAAAATAAGCTAATATCAAGTCAGCTCTTCCACATTGTTGGAGAGATAAGAAAGG
*
55065462 TGATAGAAGGAGAAATAAGGAGGTGAGATGAAACGATCACAATTGGGGGAAATTGGGAACAATTT
131 TGATAGAAGGAGAAATAAGGAGGTGAGATGAAACGATCACAATTGGGGGAAATTGGGAACAATGT
* *
55065527 CGTGAGTTATGTTGTTGATAGTGCTTGAACCATTTTAAGATAAAATTTCTTTGAATCTGTACCAA
196 CGTGAGTTATGTTGTTCATAGTGCTTGAACCATTTTAAGATAAAATTTCTTCGAATCTGTACCAA
* *
55065592 CCTAAGCCTCAGAATGTTACAAGCCACTAAGTCCTATGTGACCTTAGTGTCGCCTTTTATAAACA
261 CCTAAGCCTCAGAACGTTACAAGCCACTAAGTCCTATGTGACCTTAGTGTCGCCTTTTACAAACA
55065657 GAAACTTGTAGAAACTTATGCTC
326 GAAACTTGTAGAAACTTATGCTC
*
55065680 AAAATAAATGAAAAATATGCTCCAAAA-AAGAAAAAGAAAAGAGCATAACATTAATGCCTCAAAA
1 AAAAAAAATGAAAAATATGCT-CAAAATAAGAAAAAGAAAAGAGCATAACATTAATGCCTCAAAA
*
55065744 TCATAGTGCACAAAAATAAGCTAATATCAAGTCATCTCTTCCACATTGTTGGAGAGATAAGAAAG
65 TCATAGTGCACAAAAATAAGCTAATATCAAGTCAGCTCTTCCACATTGTTGGAGAGATAAGAAAG
* *
55065809 GTGATAGAAGGAGAAATAAGGCGGTGAGATGAAACGATCACAATTGGGGGGAATTGGGAACAATG
130 GTGATAGAAGGAGAAATAAGGAGGTGAGATGAAACGATCACAATTGGGGGAAATTGGGAACAATG
55065874 TCGTGAGTTATGTTGTTCATAGTGCTTGAA-CAGTTTTAAGATAAAATTTCTTCGAATCTGTACC
195 TCGTGAGTTATGTTGTTCATAGTGCTTGAACCA-TTTTAAGATAAAATTTCTTCGAATCTGTACC
* *
55065938 AACCTAAGCCTCAGAACGTTACAAGCCACTAAGTCCTGTGTGACCTTAGTGTCTCCTTTTACAAA
259 AACCTAAGCCTCAGAACGTTACAAGCCACTAAGTCCTATGTGACCTTAGTGTCGCCTTTTACAAA
* *
55066003 CTGAAACTTGTTGAAACTTAT
324 CAGAAACTTGTAGAAACTTAT
55066024 TGTAAATGAA
Statistics
Matches: 327, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
347 2 0.01
348 320 0.98
349 5 0.02
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.26
Consensus pattern (348 bp):
AAAAAAAATGAAAAATATGCTCAAAATAAGAAAAAGAAAAGAGCATAACATTAATGCCTCAAAAT
CATAGTGCACAAAAATAAGCTAATATCAAGTCAGCTCTTCCACATTGTTGGAGAGATAAGAAAGG
TGATAGAAGGAGAAATAAGGAGGTGAGATGAAACGATCACAATTGGGGGAAATTGGGAACAATGT
CGTGAGTTATGTTGTTCATAGTGCTTGAACCATTTTAAGATAAAATTTCTTCGAATCTGTACCAA
CCTAAGCCTCAGAACGTTACAAGCCACTAAGTCCTATGTGACCTTAGTGTCGCCTTTTACAAACA
GAAACTTGTAGAAACTTATGCTC
Found at i:55070784 original size:18 final size:19
Alignment explanation
Indices: 55070739--55070786 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
55070729 TGTTTGTTAC
55070739 ATAAATAAAAATGATTAAAT
1 ATAAAT-AAAATGATTAAAT
* *
55070759 AT-ATTAAAAT-TTTAAAT
1 ATAAATAAAATGATTAAAT
55070776 ATAAATAAAAT
1 ATAAATAAAAT
55070787 ACTGTTAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 8 0.33
18 12 0.50
19 2 0.08
20 2 0.08
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.35
Consensus pattern (19 bp):
ATAAATAAAATGATTAAAT
Found at i:55077951 original size:6 final size:6
Alignment explanation
Indices: 55077940--55077968 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
55077930 TTGAATTGCA
55077940 TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
55077969 ATTGCTCTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTC
Found at i:55078091 original size:150 final size:150
Alignment explanation
Indices: 55077820--55078092 Score: 483
Period size: 150 Copynumber: 1.8 Consensus size: 150
55077810 ATTTTTGTTT
* * * *
55077820 TTGCTCTGCTTTTAGCCAAAATATAGGATATGAAATGTGTGGGGGTATTTTAGAACTATTACTTA
1 TTGCTCTGCTTTTAGCCAAAATATAGGACATGAAATGTGTGGAGGTAATTTAGAACTACTACTTA
*
55077885 CATGTTTTTTATTTAGAACAGGTAGAACACGAGTCTGATAGCATTTTGAATTGCATTTTTCTTTT
66 CATGTTTTTTATTTAGAACAGGTAGAACACGAATCTGATAGCATTTTGAATTGCATTTTTCTTTT
55077950 TCTTTTTCTTTTTCTTTTTA
131 TCTTTTTCTTTTTCTTTTTA
* *
55077970 TTGCTCTGCTTTTAGCCAAAATATAGGGCATGAAATGTGTGGAGGTAATTTAGAGCTACTACTTA
1 TTGCTCTGCTTTTAGCCAAAATATAGGACATGAAATGTGTGGAGGTAATTTAGAACTACTACTTA
55078035 CATGTTTTTTATTTAGAACAGGTAGAACACGAATCTGATAGCATTTTGAATTGCATTT
66 CATGTTTTTTATTTAGAACAGGTAGAACACGAATCTGATAGCATTTTGAATTGCATTT
55078093 CCTTGGAACA
Statistics
Matches: 116, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
150 116 1.00
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.42
Consensus pattern (150 bp):
TTGCTCTGCTTTTAGCCAAAATATAGGACATGAAATGTGTGGAGGTAATTTAGAACTACTACTTA
CATGTTTTTTATTTAGAACAGGTAGAACACGAATCTGATAGCATTTTGAATTGCATTTTTCTTTT
TCTTTTTCTTTTTCTTTTTA
Found at i:55083494 original size:19 final size:18
Alignment explanation
Indices: 55083470--55083514 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
55083460 ATCAAATACT
*
55083470 AAATTAAATATTAAAATTA
1 AAATTAAATACT-AAATTA
*
55083489 AAATTATATACTAAATTA
1 AAATTAAATACTAAATTA
55083507 AACATTAA
1 AA-ATTAA
55083515 GGGTCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (18 bp):
AAATTAAATACTAAATTA
Found at i:55083552 original size:14 final size:14
Alignment explanation
Indices: 55083533--55083572 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
55083523 TTGTTTGCCA
55083533 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
55083547 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
55083561 GGAAAATGTTTT
1 GTAAAATGTTTT
55083573 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:55083593 original size:20 final size:20
Alignment explanation
Indices: 55083556--55083595 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
55083546 CGTAAAATGA
**
55083556 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATAATTTACT
*
55083576 TTTCTGTAAAATAATTTACT
1 TTTCTGGAAAATAATTTACT
55083596 GGAAATTATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATAATTTACT
Found at i:55084545 original size:5 final size:5
Alignment explanation
Indices: 55084535--55084580 Score: 83
Period size: 5 Copynumber: 9.2 Consensus size: 5
55084525 TCTTAGATTT
*
55084535 TTATA TTATA TTATA TTATA TTATA TTATA TTGTA TTATA TTATA T
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA T
55084581 AAGTAAAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (5 bp):
TTATA
Found at i:55084603 original size:17 final size:17
Alignment explanation
Indices: 55084576--55084616 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
55084566 TGTATTATAT
55084576 TATATAAGTAAAAATAAAA
1 TATA-AAGT-AAAATAAAA
55084595 -ATAAAGTAAAATAAAA
1 TATAAAGTAAAATAAAA
55084611 TATAAA
1 TATAAA
55084617 AAAAAAGATG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 9 0.43
17 9 0.43
18 3 0.14
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (17 bp):
TATAAAGTAAAATAAAA
Found at i:55091163 original size:17 final size:17
Alignment explanation
Indices: 55091141--55091176 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 17
55091131 NNNNNNNNAT
55091141 AAGTAAAAATAAAA-ATA
1 AAGT-AAAATAAAATATA
55091158 AAGTAAAATAAAATATA
1 AAGTAAAATAAAATATA
55091175 AA
1 AA
55091177 AAAAAGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (17 bp):
AAGTAAAATAAAATATA
Found at i:55095311 original size:12 final size:12
Alignment explanation
Indices: 55095294--55095326 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
55095284 AAACCAAATC
*
55095294 AAGGGAGAATGA
1 AAGGGAGAACGA
55095306 AAGGGAGAACGA
1 AAGGGAGAACGA
55095318 AAGGGAGAA
1 AAGGGAGAA
55095327 GGGAGAACGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.52, C:0.03, G:0.42, T:0.03
Consensus pattern (12 bp):
AAGGGAGAACGA
Found at i:55095560 original size:14 final size:14
Alignment explanation
Indices: 55095541--55095582 Score: 84
Period size: 14 Copynumber: 3.0 Consensus size: 14
55095531 TGGAAAAGGT
55095541 GGAAAATATTTTCC
1 GGAAAATATTTTCC
55095555 GGAAAATATTTTCC
1 GGAAAATATTTTCC
55095569 GGAAAATATTTTCC
1 GGAAAATATTTTCC
55095583 ACCAAACAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (14 bp):
GGAAAATATTTTCC
Found at i:55098191 original size:31 final size:31
Alignment explanation
Indices: 55098156--55098220 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
55098146 AAAAAAACTT
55098156 AATAGC-CTAATGACTTAAATAAAAACTTTTG
1 AATAGCTC-AATGACTTAAATAAAAACTTTTG
* * *
55098187 AATAGTTCAATGGCTTAAATGAAAACTTTTG
1 AATAGCTCAATGACTTAAATAAAAACTTTTG
55098218 AAT
1 AAT
55098221 GGTTAAGTGA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
31 29 0.97
32 1 0.03
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.34
Consensus pattern (31 bp):
AATAGCTCAATGACTTAAATAAAAACTTTTG
Found at i:55099437 original size:2 final size:2
Alignment explanation
Indices: 55099430--55099510 Score: 162
Period size: 2 Copynumber: 40.5 Consensus size: 2
55099420 AAATAAAAAC
55099430 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
55099472 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
55099511 CTNNNNNNNN
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 79 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:55101885 original size:43 final size:42
Alignment explanation
Indices: 55101815--55101940 Score: 150
Period size: 43 Copynumber: 2.9 Consensus size: 42
55101805 TCGTACAATC
*
55101815 CCAACGTCCCAGACGTGGTCTTACACGTAATCACATATCGATG
1 CCAACATCCCAGACGTGGTCTTACACGTAA-CACATATCGATG
* *
55101858 CC-ACTGTCTCAGACAG-GGTCTTACACGTAA-ACATAAATCGATG
1 CCAAC-ATCCCAGAC-GTGGTCTTACACGTAACACAT--ATCGATG
55101901 CCAACATCCCAGACGTGGTCTTACACGATAACACATATCG
1 CCAACATCCCAGACGTGGTCTTACACG-TAACACATATCG
55101941 GAAATCCTAT
Statistics
Matches: 72, Mismatches: 3, Indels: 16
0.79 0.03 0.18
Matches are distributed among these distances:
41 4 0.06
42 3 0.04
43 55 0.76
44 6 0.08
45 4 0.06
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.22
Consensus pattern (42 bp):
CCAACATCCCAGACGTGGTCTTACACGTAACACATATCGATG
Found at i:55107691 original size:22 final size:22
Alignment explanation
Indices: 55107635--55107691 Score: 96
Period size: 22 Copynumber: 2.6 Consensus size: 22
55107625 TTTTAAGCGG
*
55107635 TATCGATACCATCTATGAGAAT
1 TATCGATACCATTTATGAGAAT
*
55107657 TATCAATACCATTTATGAGAAT
1 TATCGATACCATTTATGAGAAT
55107679 TATCGATACCATT
1 TATCGATACCATT
55107692 AAATGAGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.35
Consensus pattern (22 bp):
TATCGATACCATTTATGAGAAT
Found at i:55111851 original size:15 final size:15
Alignment explanation
Indices: 55111833--55111865 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
55111823 ATTCCTTTAA
55111833 AAATTA-TAAAAATAT
1 AAATTATTAAAAAT-T
55111848 AAATTATTAAAAATT
1 AAATTATTAAAAATT
55111863 AAA
1 AAA
55111866 ATTTTATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AAATTATTAAAAATT
Found at i:55112463 original size:20 final size:21
Alignment explanation
Indices: 55112438--55112485 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
55112428 ATTAATTATT
*
55112438 TATAAAAT-TTAATTTAAATA
1 TATAAAATCATAATTTAAATA
*
55112458 TAT-AAATCATATTTTAAATA
1 TATAAAATCATAATTTAAATA
55112478 T-TAAAATC
1 TATAAAATC
55112486 TAAATATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (21 bp):
TATAAAATCATAATTTAAATA
Found at i:55115579 original size:2 final size:2
Alignment explanation
Indices: 55115572--55115614 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
55115562 TAGTGAGGTT
55115572 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
55115614 T
1 T
55115615 GTTGCATAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:55119992 original size:16 final size:16
Alignment explanation
Indices: 55119971--55120006 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
55119961 GATTTGCTAT
55119971 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
55119987 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
55120003 TACA
1 TACA
55120007 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:55121761 original size:21 final size:19
Alignment explanation
Indices: 55121710--55121774 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 19
55121700 CTTATTTTTT
*
55121710 AAAATT-AAAAATTTGTAA
1 AAAATTAAAAAATTTATAA
55121728 AAAATTAATAAAATTTATAA
1 AAAATTAA-AAAATTTATAA
* *
55121748 ATAAATTTCAAAAAAATTATTA
1 A-AAA-TT-AAAAAATTTATAA
55121770 AAAAT
1 AAAAT
55121775 CATTTAAAAG
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
18 6 0.15
19 1 0.03
20 12 0.31
21 6 0.15
22 12 0.31
23 2 0.05
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.34
Consensus pattern (19 bp):
AAAATTAAAAAATTTATAA
Found at i:55123307 original size:26 final size:26
Alignment explanation
Indices: 55123277--55123332 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
55123267 GGAGCTCTTG
* *
55123277 ATTAAAGGCTCTTCGTGAGCTTCCTA
1 ATTAAAAGCTCTTCGTGAACTTCCTA
* *
55123303 ATTAAAAGTTCTTTGTGAACTTCCTA
1 ATTAAAAGCTCTTCGTGAACTTCCTA
55123329 ATTA
1 ATTA
55123333 TGGCTATTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (26 bp):
ATTAAAAGCTCTTCGTGAACTTCCTA
Found at i:55128082 original size:6 final size:6
Alignment explanation
Indices: 55128058--55128101 Score: 61
Period size: 6 Copynumber: 7.2 Consensus size: 6
55128048 TGCAAATGTA
* *
55128058 TCATTT CTCATTT TTATTT TCATTT TCATTT TCATTT CCATTT T
1 TCATTT -TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT T
55128102 GAGAAAACCA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
6 27 0.82
7 6 0.18
ACGTcount: A:0.16, C:0.18, G:0.00, T:0.66
Consensus pattern (6 bp):
TCATTT
Found at i:55132897 original size:21 final size:21
Alignment explanation
Indices: 55132833--55132897 Score: 76
Period size: 21 Copynumber: 3.1 Consensus size: 21
55132823 CATGATCAGT
*
55132833 ATACGACATATAAAGTGCCTG
1 ATACGACACATAAAGTGCCTG
* ** *
55132854 AAACGACACACGAGGTGCCTG
1 ATACGACACATAAAGTGCCTG
*
55132875 ATACGACACATAAAATGCCTG
1 ATACGACACATAAAGTGCCTG
55132896 AT
1 AT
55132898 CGGCAAAGCC
Statistics
Matches: 34, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.18
Consensus pattern (21 bp):
ATACGACACATAAAGTGCCTG
Found at i:55134216 original size:5 final size:5
Alignment explanation
Indices: 55134208--55134279 Score: 58
Period size: 5 Copynumber: 14.2 Consensus size: 5
55134198 TATTTAATTT
* * * * *
55134208 ATATA ATATA ATACA ATATA ATACA ATACA ATATA TTATATT ATATT ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA --ATATA ATATA ATATA
55134260 ATA-A A-ATA ATATA TATATA A
1 ATATA ATATA ATATA -ATATA A
55134280 AACATAAAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
3 1 0.02
4 4 0.07
5 42 0.75
6 5 0.09
7 4 0.07
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:55134839 original size:23 final size:23
Alignment explanation
Indices: 55134813--55134857 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
55134803 TTTCTTACTG
* *
55134813 TAGTAATTTTCGGGGTATTACAA
1 TAGTAATTTTCAGGATATTACAA
55134836 TAGTAATTTTCAGGATATTACA
1 TAGTAATTTTCAGGATATTACA
55134858 TATACGAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (23 bp):
TAGTAATTTTCAGGATATTACAA
Found at i:55138476 original size:25 final size:24
Alignment explanation
Indices: 55138431--55138524 Score: 70
Period size: 24 Copynumber: 4.0 Consensus size: 24
55138421 AATTATTCAA
* *
55138431 CAAATTGGACAGCAATA-ACATGCT
1 CAAAATGGACAGCATTATACAT-CT
55138455 CAAAATGGACAGCATTATACA--T
1 CAAAATGGACAGCATTATACATCT
* * * * *
55138477 CAAATTAGACAGC-TTAAATATACC
1 CAAAATGGACAGCATTATACAT-CT
55138501 CAAAATTGGACAGCATTATACATC
1 CAAAA-TGGACAGCATTATACATC
55138525 AAATTANNNN
Statistics
Matches: 53, Mismatches: 11, Indels: 11
0.71 0.15 0.15
Matches are distributed among these distances:
21 5 0.09
22 12 0.23
24 19 0.36
25 11 0.21
26 6 0.11
ACGTcount: A:0.44, C:0.20, G:0.13, T:0.23
Consensus pattern (24 bp):
CAAAATGGACAGCATTATACATCT
Found at i:55138481 original size:46 final size:47
Alignment explanation
Indices: 55138412--55138530 Score: 143
Period size: 47 Copynumber: 2.5 Consensus size: 47
55138402 CAACTCTATT
* * * * *
55138412 TTGGACAGCAATTATTCAACAAATTGGACAGCA-ATAACATGCTCAAAA
1 TTGGACAGC-ATTATACATCAAATTAGACAGCATA-AACATACCCAAAA
* *
55138460 -TGGACAGCATTATACATCAAATTAGACAGCTTAAATATACCCAAAA
1 TTGGACAGCATTATACATCAAATTAGACAGCATAAACATACCCAAAA
55138506 TTGGACAGCATTATACATCAAATTA
1 TTGGACAGCATTATACATCAAATTA
55138531 NNNNNNNNNN
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
46 29 0.47
47 33 0.53
ACGTcount: A:0.44, C:0.18, G:0.13, T:0.25
Consensus pattern (47 bp):
TTGGACAGCATTATACATCAAATTAGACAGCATAAACATACCCAAAA
Found at i:55138487 original size:22 final size:22
Alignment explanation
Indices: 55138462--55138530 Score: 68
Period size: 22 Copynumber: 3.0 Consensus size: 22
55138452 GCTCAAAATG
55138462 GACAGCATTATACATCAAATTA
1 GACAGCATTATACATCAAATTA
* * *
55138484 GACAGC-TTAAATATACCCAAAATTG
1 GACAGCATT--ATACA-TC-AAATTA
55138509 GACAGCATTATACATCAAATTA
1 GACAGCATTATACATCAAATTA
55138531 NNNNNNNNNN
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
21 2 0.06
22 11 0.31
23 5 0.14
24 5 0.14
25 11 0.31
26 2 0.06
ACGTcount: A:0.45, C:0.19, G:0.10, T:0.26
Consensus pattern (22 bp):
GACAGCATTATACATCAAATTA
Found at i:55139492 original size:28 final size:27
Alignment explanation
Indices: 55139460--55139558 Score: 103
Period size: 28 Copynumber: 3.6 Consensus size: 27
55139450 TTAATAAGTA
*
55139460 CGCACACTTAGTGCTTAATAATCAAACT
1 CGCACACTTAGTGCTT-ATAATTAAACT
* * *
55139488 CGCACACTTAGTG-TTTTACCCTTATACT
1 CGCACACTTAGTGCTTATA--ATTAAACT
55139516 CGCACACTTAGTGCATT-TCAATTAAACT
1 CGCACACTTAGTGC-TTAT-AATTAAACT
55139544 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
55139559 AATCTCATTA
Statistics
Matches: 60, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
26 2 0.03
27 3 0.05
28 51 0.85
29 1 0.02
30 3 0.05
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.32
Consensus pattern (27 bp):
CGCACACTTAGTGCTTATAATTAAACT
Found at i:55144618 original size:21 final size:21
Alignment explanation
Indices: 55144594--55144645 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
55144584 TGTTAGTAAA
* *
55144594 TAATTTAAATTTTTAAAAATT
1 TAATTTAAATTCTAAAAAATT
**
55144615 TAATAAAAATTCTAAAAAATT
1 TAATTTAAATTCTAAAAAATT
55144636 TAATTCTAAA
1 TAATT-TAAA
55144646 AATGATAATT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
21 21 0.88
22 3 0.12
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (21 bp):
TAATTTAAATTCTAAAAAATT
Found at i:55146777 original size:24 final size:24
Alignment explanation
Indices: 55146750--55146823 Score: 75
Period size: 24 Copynumber: 3.2 Consensus size: 24
55146740 TGAAATAAAA
55146750 TAAAAATTATGATAATTATACATT
1 TAAAAATTATGATAATTATACATT
* *
55146774 TAAAAATAATTATAATT-TA-A--
1 TAAAAATTATGATAATTATACATT
* * *
55146794 TAGAAATTATGATAGTTACACATT
1 TAAAAATTATGATAATTATACATT
55146818 TAAAAA
1 TAAAAA
55146824 CAATTAGAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
20 13 0.34
21 1 0.03
22 2 0.05
23 2 0.05
24 20 0.53
ACGTcount: A:0.53, C:0.04, G:0.05, T:0.38
Consensus pattern (24 bp):
TAAAAATTATGATAATTATACATT
Found at i:55146804 original size:44 final size:44
Alignment explanation
Indices: 55146748--55146837 Score: 135
Period size: 44 Copynumber: 2.0 Consensus size: 44
55146738 TTTGAAATAA
* * *
55146748 AATAAAAATTATGATAATTATACATTTAAAAATAATTATAATTT
1 AATAAAAATTATGATAATTACACATTTAAAAACAATTAGAATTT
* *
55146792 AATAGAAATTATGATAGTTACACATTTAAAAACAATTAGAATTT
1 AATAAAAATTATGATAATTACACATTTAAAAACAATTAGAATTT
55146836 AA
1 AA
55146838 ATTACAATTA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.53, C:0.04, G:0.06, T:0.37
Consensus pattern (44 bp):
AATAAAAATTATGATAATTACACATTTAAAAACAATTAGAATTT
Found at i:55151017 original size:11 final size:11
Alignment explanation
Indices: 55151003--55151044 Score: 57
Period size: 11 Copynumber: 3.6 Consensus size: 11
55150993 TAAATATTAC
55151003 TTTATTAATAT
1 TTTATTAATAT
*
55151014 TTTAATGAGATAT
1 TTT-ATTA-ATAT
55151027 TTTATTAATAT
1 TTTATTAATAT
55151038 TTTATTA
1 TTTATTA
55151045 TAAATAGCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 14 0.52
12 6 0.22
13 7 0.26
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (11 bp):
TTTATTAATAT
Found at i:55155375 original size:62 final size:62
Alignment explanation
Indices: 55155278--55155429 Score: 189
Period size: 62 Copynumber: 2.5 Consensus size: 62
55155268 ACTGCCTGGG
* * *
55155278 CACACTCCTATGTCCATGCTCT-TGTGGTCCTAAATCATAAAAAGTGAGTTACACGACCTAGA
1 CACACGCCCATGTCCATGC-CTGTGTGGCCCTAAATCATAAAAAGTGAGTTACACGACCTAGA
* * * * * *
55155340 CACACGCCCATGTCCATGCCTGTGTGGCCCTAAATCATAAATAGTGAGTTACATGGCTTGGG
1 CACACGCCCATGTCCATGCCTGTGTGGCCCTAAATCATAAAAAGTGAGTTACACGACCTAGA
* *
55155402 CACACGCCCATGTCCTTGCCCGTGTGGC
1 CACACGCCCATGTCCATGCCTGTGTGGC
55155430 TCACACGGCC
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
61 2 0.03
62 76 0.97
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (62 bp):
CACACGCCCATGTCCATGCCTGTGTGGCCCTAAATCATAAAAAGTGAGTTACACGACCTAGA
Found at i:55156635 original size:17 final size:18
Alignment explanation
Indices: 55156618--55156693 Score: 68
Period size: 20 Copynumber: 4.2 Consensus size: 18
55156608 AAATTGATAT
55156618 AAATATAAAAACATTATA
1 AAATATAAAAACATTATA
* *
55156636 AACATATTATAAATATTATAA
1 AA-ATA-TAAAAACATTAT-A
55156657 AAATATAAAAAC--TATA
1 AAATATAAAAACATTATA
* *
55156673 AATTATAAAAA-AATATA
1 AAATATAAAAACATTATA
55156690 AAAT
1 AAAT
55156694 TAATAAAACA
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
16 11 0.23
17 10 0.21
18 2 0.04
19 8 0.17
20 13 0.28
21 3 0.06
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (18 bp):
AAATATAAAAACATTATA
Found at i:55156660 original size:11 final size:11
Alignment explanation
Indices: 55156621--55156662 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
55156611 TTGATATAAA
*
55156621 TATAAAAACAT
1 TATAAAAATAT
*
55156632 TATAAACATAT
1 TATAAAAATAT
55156643 TAT--AAATAT
1 TATAAAAATAT
55156652 TATAAAAATAT
1 TATAAAAATAT
55156663 AAAAACTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
9 8 0.31
11 18 0.69
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.36
Consensus pattern (11 bp):
TATAAAAATAT
Found at i:55156699 original size:26 final size:26
Alignment explanation
Indices: 55156598--55156700 Score: 86
Period size: 26 Copynumber: 3.8 Consensus size: 26
55156588 ATTAATATTT
*
55156598 AAAAATATGAAAATTGATATAAATATAA
1 AAAAATATAAAAATT-A-ATAAATATAA
* *
55156626 AAACATTATAAACATATT-ATAAATATTAT
1 AAA-AATATAAA-A-ATTAATAAATA-TAA
*
55156655 AAAAATATAAAAACT-ATAAATTATAA
1 AAAAATATAAAAATTAATAAA-TATAA
55156681 AAAAATAT-AAAATTAATAAA
1 AAAAATATAAAAATTAATAAA
55156701 ACATATTGTA
Statistics
Matches: 62, Mismatches: 7, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
25 5 0.08
26 22 0.35
27 3 0.05
28 17 0.27
29 11 0.18
30 1 0.02
31 3 0.05
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (26 bp):
AAAAATATAAAAATTAATAAATATAA
Found at i:55156706 original size:18 final size:17
Alignment explanation
Indices: 55156614--55156706 Score: 57
Period size: 18 Copynumber: 5.2 Consensus size: 17
55156604 ATGAAAATTG
55156614 ATATAAA-TATAAAAAC
1 ATATAAATTATAAAAAC
* * *
55156630 ATTATAAACATATTATAAAT
1 A-TATAAA-TTA-TAAAAAC
*
55156650 ATTATAAAAATATAAAAAC
1 A-TAT-AAATTATAAAAAC
*
55156669 -TATAAATTATAAAAAA
1 ATATAAATTATAAAAAC
55156685 ATATAAAATTA-ATAAAAC
1 ATAT-AAATTATA-AAAAC
55156703 ATAT
1 ATAT
55156707 TGTAATGGCC
Statistics
Matches: 62, Mismatches: 7, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
16 12 0.19
17 13 0.21
18 14 0.23
19 7 0.11
20 13 0.21
21 3 0.05
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (17 bp):
ATATAAATTATAAAAAC
Found at i:55158544 original size:14 final size:14
Alignment explanation
Indices: 55158525--55158554 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
55158515 GTTCTCTAAC
55158525 TTACGGGGTTTCAA
1 TTACGGGGTTTCAA
55158539 TTACGGGGTTTCAA
1 TTACGGGGTTTCAA
55158553 TT
1 TT
55158555 TTCTCGATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.13, G:0.27, T:0.40
Consensus pattern (14 bp):
TTACGGGGTTTCAA
Found at i:55159169 original size:20 final size:19
Alignment explanation
Indices: 55159141--55159190 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
55159131 ATTTCGACAC
*
55159141 ATATTAAAATATATAAAATT
1 ATATAAAAATAT-TAAAATT
*
55159161 ATATAAAAAGTATTAAACTT
1 ATATAAAAA-TATTAAAATT
55159181 ATATAAAAAT
1 ATATAAAAAT
55159191 CATAAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 1 0.04
20 23 0.85
21 3 0.11
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (19 bp):
ATATAAAAATATTAAAATT
Found at i:55159789 original size:21 final size:21
Alignment explanation
Indices: 55159765--55159805 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
55159755 CTTTACTAAA
55159765 TTTATAATATTT-ATAAGTTTT
1 TTTATAAT-TTTAATAAGTTTT
55159786 TTTATAATTTTAATAAGTTT
1 TTTATAATTTTAATAAGTTT
55159806 ATATCAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (21 bp):
TTTATAATTTTAATAAGTTTT
Found at i:55161872 original size:16 final size:18
Alignment explanation
Indices: 55161846--55161878 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
55161836 CTTAAAAATT
55161846 ATATAATTAAT-TTTTTA
1 ATATAATTAATATTTTTA
55161863 ATAT-ATTAATATTTTT
1 ATATAATTAATATTTTT
55161879 TAAAAAATCG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
ATATAATTAATATTTTTA
Found at i:55164498 original size:9 final size:9
Alignment explanation
Indices: 55164486--55164516 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
55164476 AATTATAATA
55164486 ATAAACAAT
1 ATAAACAAT
55164495 ATAAACAAT
1 ATAAACAAT
55164504 ATAAACAAT
1 ATAAACAAT
55164513 ATAA
1 ATAA
55164517 TAAAAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.68, C:0.10, G:0.00, T:0.23
Consensus pattern (9 bp):
ATAAACAAT
Done.