Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62769430
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1067035 characters in sequence are not A, C, G, or T
File 199 of 206
Found at i:60208729 original size:59 final size:59
Alignment explanation
Indices: 60208646--60208794 Score: 190
Period size: 59 Copynumber: 2.5 Consensus size: 59
60208636 GGGCCGAAAC
* * *
60208646 GTAATTTTGAGAAAGTTAAAGGGTTCAAATGTAATTTCAAGAAAGTTTAAGGGTCAAAAT
1 GTAATTTAGA-AAAGTTTAAGGGTTAAAATGTAATTTCAAGAAAGTTTAAGGGTCAAAAT
* * * * * *
60208706 GTAATTTAGAAAAGTTTAGGGGTTGAACTGTAATTTTAAGAAAGTTTAGGGGTTAAAAT
1 GTAATTTAGAAAAGTTTAAGGGTTAAAATGTAATTTCAAGAAAGTTTAAGGGTCAAAAT
*
60208765 GCAATTTTAGAAAAGTTTAAGGGTTAAAAT
1 GTAA-TTTAGAAAAGTTTAAGGGTTAAAAT
60208795 ACAAAAAAAT
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
59 45 0.59
60 31 0.41
ACGTcount: A:0.40, C:0.03, G:0.23, T:0.34
Consensus pattern (59 bp):
GTAATTTAGAAAAGTTTAAGGGTTAAAATGTAATTTCAAGAAAGTTTAAGGGTCAAAAT
Found at i:60210500 original size:27 final size:28
Alignment explanation
Indices: 60210459--60210528 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
60210449 TTTGTAATAT
*
60210459 ATATTGTCAAATGAGCATA-GTCTAGGCG
1 ATATTGGC-AATGAGCATAGGTCTAGGCG
* *
60210487 ATATTGGCAATGAGGATAGGTGTAGGCG
1 ATATTGGCAATGAGCATAGGTCTAGGCG
60210515 ATATTGGCAATGAG
1 ATATTGGCAATGAG
60210529 TGCATTGGAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
27 9 0.24
28 29 0.76
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.27
Consensus pattern (28 bp):
ATATTGGCAATGAGCATAGGTCTAGGCG
Found at i:60217162 original size:14 final size:12
Alignment explanation
Indices: 60217134--60217166 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
60217124 TGTGAAACCC
60217134 ATATATTTTGGT
1 ATATATTTTGGT
*
60217146 ATATATTTTGGG
1 ATATATTTTGGT
60217158 ATATATTTT
1 ATATATTTT
60217167 AAAGTTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (12 bp):
ATATATTTTGGT
Found at i:60217195 original size:19 final size:19
Alignment explanation
Indices: 60217171--60217211 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
60217161 TATTTTAAAG
60217171 TTATTTAGGTAGATAAATC
1 TTATTTAGGTAGATAAATC
60217190 TTATTTAGGTAGATAAATC
1 TTATTTAGGTAGATAAATC
60217209 TTA
1 TTA
60217212 GAATAAATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.37, C:0.05, G:0.15, T:0.44
Consensus pattern (19 bp):
TTATTTAGGTAGATAAATC
Found at i:60217302 original size:41 final size:41
Alignment explanation
Indices: 60217250--60217328 Score: 140
Period size: 41 Copynumber: 1.9 Consensus size: 41
60217240 TATTTTATTT
60217250 TATCATTTAGTAGTTTATTAGAATAAGGAAATTATTTTCCG
1 TATCATTTAGTAGTTTATTAGAATAAGGAAATTATTTTCCG
* *
60217291 TATCTTTTAGTAGTTTATTAGAATAAGGGAATTATTTT
1 TATCATTTAGTAGTTTATTAGAATAAGGAAATTATTTT
60217329 TCTAATTAGG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.33, C:0.05, G:0.15, T:0.47
Consensus pattern (41 bp):
TATCATTTAGTAGTTTATTAGAATAAGGAAATTATTTTCCG
Found at i:60223983 original size:2 final size:2
Alignment explanation
Indices: 60223976--60224013 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
60223966 AAACAAAGCA
60223976 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
60224014 TAGTGGCGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60236536 original size:26 final size:23
Alignment explanation
Indices: 60236487--60236542 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 23
60236477 ACTATATAAA
*
60236487 AAATTTAATAAATAAAAATGTAT
1 AAATTTAATAAATAAAAATATAT
*
60236510 AAATTTATTAAATATTAAAATA-AT
1 AAATTTAATAAATA--AAAATATAT
60236534 ATAATTTAA
1 A-AATTTAA
60236543 ATATATTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 13 0.48
24 3 0.11
25 11 0.41
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (23 bp):
AAATTTAATAAATAAAAATATAT
Found at i:60238826 original size:11 final size:11
Alignment explanation
Indices: 60238810--60238846 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
60238800 AAGCCCATTT
60238810 TATTTTTTTAA
1 TATTTTTTTAA
60238821 TATTTTTTT-A
1 TATTTTTTTAA
60238831 T-TTTATTTTAA
1 TATTT-TTTTAA
60238842 TATTT
1 TATTT
60238847 AATAATTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
9 3 0.13
10 6 0.26
11 11 0.48
12 3 0.13
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (11 bp):
TATTTTTTTAA
Found at i:60238831 original size:19 final size:21
Alignment explanation
Indices: 60238807--60238846 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
60238797 CCAAAGCCCA
60238807 TTTTA-TTT-TTTTAATATTT
1 TTTTATTTTATTTTAATATTT
60238826 TTTTATTTTATTTTAATATTT
1 TTTTATTTTATTTTAATATTT
60238847 AATAATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.26
20 3 0.16
21 11 0.58
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (21 bp):
TTTTATTTTATTTTAATATTT
Found at i:60238854 original size:21 final size:21
Alignment explanation
Indices: 60238815--60238857 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
60238805 CATTTTATTT
** *
60238815 TTTTAATATTTTTTTATTTTA
1 TTTTAATATTTAATAATTTTA
60238836 TTTTAATATTTAATAATTTTA
1 TTTTAATATTTAATAATTTTA
60238857 T
1 T
60238858 ACAGTTTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTTAATATTTAATAATTTTA
Found at i:60245676 original size:20 final size:18
Alignment explanation
Indices: 60245651--60245706 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 18
60245641 TAAAAAATAT
*
60245651 TTTTAAAAATTGTTATAAAA
1 TTTTAAAAATT-AT-TAAAA
60245671 TTTTAAAACATTATTAAAA
1 TTTTAAAA-ATTATTAAAA
60245690 TTTATAAAAA-TATTAAA
1 TTT-TAAAAATTATTAAA
60245707 TAAAGTTCAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
18 7 0.21
19 9 0.27
20 14 0.42
21 3 0.09
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (18 bp):
TTTTAAAAATTATTAAAA
Found at i:60245687 original size:11 final size:9
Alignment explanation
Indices: 60245651--60245706 Score: 51
Period size: 10 Copynumber: 5.8 Consensus size: 9
60245641 TAAAAAATAT
60245651 TTTTAAAAA
1 TTTTAAAAA
60245660 TTGTTATAAAA
1 TT-TTA-AAAA
60245671 TTTTAAAACA
1 TTTTAAAA-A
60245681 TTATT-AAAA
1 TT-TTAAAAA
60245690 TTTATAAAAA
1 TTT-TAAAAA
*
60245700 TATTAAA
1 TTTTAAA
60245707 TAAAGTTCAA
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
8 1 0.03
9 13 0.32
10 18 0.45
11 8 0.20
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (9 bp):
TTTTAAAAA
Found at i:60245693 original size:18 final size:19
Alignment explanation
Indices: 60245666--60245706 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
60245656 AAAATTGTTA
*
60245666 TAAAATTTTA-AAACATTAT
1 TAAAATTTTATAAA-AATAT
60245685 TAAAA-TTTATAAAAATAT
1 TAAAATTTTATAAAAATAT
60245703 TAAA
1 TAAA
60245707 TAAAGTTCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (19 bp):
TAAAATTTTATAAAAATAT
Found at i:60245704 original size:21 final size:19
Alignment explanation
Indices: 60245651--60245704 Score: 56
Period size: 19 Copynumber: 2.7 Consensus size: 19
60245641 TAAAAAATAT
*
60245651 TTTTAAAAATTGTTATAAAA
1 TTTTAAAAA-TATTATAAAA
*
60245671 TTTT-AAAACATTATTAAAA
1 TTTTAAAAATATTA-TAAAA
60245690 TTTATAAAAATATTA
1 TTT-TAAAAATATTA
60245705 AATAAAGTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 3 0.11
19 12 0.43
20 5 0.18
21 8 0.29
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (19 bp):
TTTTAAAAATATTATAAAA
Found at i:60246170 original size:20 final size:21
Alignment explanation
Indices: 60246132--60246173 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
60246122 CAATAAAAAA
*
60246132 TAAACATTTCTTTTAATTTTT
1 TAAAAATTTCTTTTAATTTTT
*
60246153 TAAAAATTT-TTTTGATTTTT
1 TAAAAATTTCTTTTAATTTTT
60246173 T
1 T
60246174 TTCTTGACGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (21 bp):
TAAAAATTTCTTTTAATTTTT
Found at i:60248531 original size:4 final size:4
Alignment explanation
Indices: 60248516--60248554 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
60248506 TAAAAGCGGC
* *
60248516 TGTA TTTA TGTA TGTA TGTA TGTA TGTG TGTA TTGTA TG
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA -TGTA TG
60248555 CTGAGTTGCT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
4 26 0.87
5 4 0.13
ACGTcount: A:0.21, C:0.00, G:0.26, T:0.54
Consensus pattern (4 bp):
TGTA
Found at i:60248686 original size:4 final size:4
Alignment explanation
Indices: 60248677--60248747 Score: 97
Period size: 4 Copynumber: 17.8 Consensus size: 4
60248667 TAAAAGCAGC
* *
60248677 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGCA TGTA TGTA TGCA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* **
60248725 TATA TGTA TGTA CATA TGTA TGT
1 TGTA TGTA TGTA TGTA TGTA TGT
60248748 GTATGCGTGT
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
4 57 1.00
ACGTcount: A:0.27, C:0.04, G:0.23, T:0.46
Consensus pattern (4 bp):
TGTA
Found at i:60253545 original size:14 final size:14
Alignment explanation
Indices: 60253526--60253555 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
60253516 AGAAGAGACG
60253526 TGCTAAAAGTAGCA
1 TGCTAAAAGTAGCA
60253540 TGCTAAAAGTAGCA
1 TGCTAAAAGTAGCA
60253554 TG
1 TG
60253556 GAGGACTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.40, C:0.13, G:0.23, T:0.23
Consensus pattern (14 bp):
TGCTAAAAGTAGCA
Found at i:60255470 original size:43 final size:43
Alignment explanation
Indices: 60255352--60255485 Score: 121
Period size: 43 Copynumber: 3.2 Consensus size: 43
60255342 CTGGCATAGC
**
60255352 AGTGCATGATTAGAT-AACCGAAAG-AAAGATACTGGCACAAAT
1 AGTGCATGATTAGATAAACCG-AAGCAATCATACTGGCACAAAT
* * * * * * * * *
60255394 AGTGCATCATCAGACAATCTGAAACAGTTATACTGGCACACAT
1 AGTGCATGATTAGATAAACCGAAGCAATCATACTGGCACAAAT
* *
60255437 AGTGCATGATTGGATAAACCGAAGCAATCATACTGGCACATA-
1 AGTGCATGATTAGATAAACCGAAGCAATCATACTGGCACAAAT
60255479 AGTGCAT
1 AGTGCAT
60255486 CATCGAATTT
Statistics
Matches: 70, Mismatches: 20, Indels: 4
0.74 0.21 0.04
Matches are distributed among these distances:
42 21 0.30
43 49 0.70
ACGTcount: A:0.40, C:0.19, G:0.20, T:0.22
Consensus pattern (43 bp):
AGTGCATGATTAGATAAACCGAAGCAATCATACTGGCACAAAT
Found at i:60255504 original size:42 final size:42
Alignment explanation
Indices: 60255431--60255659 Score: 144
Period size: 42 Copynumber: 5.4 Consensus size: 42
60255421 TTATACTGGC
* ** *
60255431 ACACAT-AGTGCATGATTGGATAAACCGAAGCAATCATACTG
1 ACACATAAGTGCATCATCAGATAAACCAAAGCAATCATACTG
* ** *
60255472 GCACATAAGTGCATCATC-GAATTTACCAAAGCAAAT-ATATTG
1 ACACATAAGTGCATCATCAG-ATAAACCAAAGC-AATCATACTG
* *
60255514 ACACATAAGCTACATCATCAGATAAACCGAAGCAATCATACTG
1 ACACATAAG-TGCATCATCAGATAAACCAAAGCAATCATACTG
* * ** * * * *
60255557 ACACATAAGTGTATAATTGGA-AGTACCAAAGTAAAT-ATATTA
1 ACACATAAGTGCATCATCAGATA-AACCAAAG-CAATCATACTG
* * * ** **
60255599 ACACACGAGGCGCATCATTGGATAAACTGAAGCAATCATACTG
1 ACACA-TAAGTGCATCATCAGATAAACCAAAGCAATCATACTG
60255642 ACACATAAGTGCATCATC
1 ACACATAAGTGCATCATC
60255660 TAATAGACCG
Statistics
Matches: 139, Mismatches: 38, Indels: 21
0.70 0.19 0.11
Matches are distributed among these distances:
41 7 0.05
42 68 0.49
43 62 0.45
44 2 0.01
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (42 bp):
ACACATAAGTGCATCATCAGATAAACCAAAGCAATCATACTG
Found at i:60255547 original size:43 final size:41
Alignment explanation
Indices: 60255449--60255566 Score: 139
Period size: 43 Copynumber: 2.8 Consensus size: 41
60255439 TGCATGATTG
* *
60255449 GATAAACCGAAGCAATCATACTGGCACATAAGTGCATCATC
1 GATAAACCGAAGCAATCATACTGACACATAAGTACATCATC
** * *
60255490 GAATTTACCAAAGCAAAT-ATATTGACACATAAGCTACATCATC
1 G-ATAAACCGAAGC-AATCATACTGACACATAAG-TACATCATC
60255533 AGATAAACCGAAGCAATCATACTGACACATAAGT
1 -GATAAACCGAAGCAATCATACTGACACATAAGT
60255567 GTATAATTGG
Statistics
Matches: 62, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
41 1 0.02
42 26 0.42
43 34 0.55
44 1 0.02
ACGTcount: A:0.43, C:0.22, G:0.14, T:0.21
Consensus pattern (41 bp):
GATAAACCGAAGCAATCATACTGACACATAAGTACATCATC
Found at i:60255674 original size:85 final size:85
Alignment explanation
Indices: 60255439--60255674 Score: 271
Period size: 85 Copynumber: 2.8 Consensus size: 85
60255429 GCACACATAG
* * * ** *
60255439 TGCATGATTGGATAAACCGAAGCAATCATACTGGCACATAAGTGCATCATCGAATTTACCAAAGC
1 TGCATCATTGGATAAACCGAAGCAATCATACTGACACATAAGTGCATCATCTAATAGACCAAAGT
* *
60255504 AAATATATTGACACATAAGC
66 AAATATATTAACACAGAAGC
* ** * * *
60255524 TACATCATCAGATAAACCGAAGCAATCATACTGACACATAAGTGTATAAT-TGGA-AGTACCAAA
1 TGCATCATTGGATAAACCGAAGCAATCATACTGACACATAAGTGCATCATCT-AATAG-ACCAAA
*
60255587 GTAAATATATTAACACACGAGGC
64 GTAAATATATTAACACA-GAAGC
* *
60255610 -GCATCATTGGATAAACTGAAGCAATCATACTGACACATAAGTGCATCATCTAATAGACCGAAGT
1 TGCATCATTGGATAAACCGAAGCAATCATACTGACACATAAGTGCATCATCTAATAGACCAAAGT
60255674 A
66 A
60255675 TAACCCGTAC
Statistics
Matches: 123, Mismatches: 23, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
85 117 0.95
86 6 0.05
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.23
Consensus pattern (85 bp):
TGCATCATTGGATAAACCGAAGCAATCATACTGACACATAAGTGCATCATCTAATAGACCAAAGT
AAATATATTAACACAGAAGC
Found at i:60261579 original size:28 final size:25
Alignment explanation
Indices: 60261518--60261580 Score: 63
Period size: 30 Copynumber: 2.3 Consensus size: 25
60261508 ATAGTTGTGT
*
60261518 TTTTATTACTTTCATTTATATACTA
1 TTTTATTACTTTCACTTATATACTA
60261543 TAGTATTATTCCACTTTCACTTATATAGCTA
1 T--T-TTATT--ACTTTCACTTATATA-CTA
60261574 TTTTATT
1 TTTTATT
60261581 TCATTTTTGC
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
25 1 0.03
27 1 0.03
28 10 0.32
29 1 0.03
30 14 0.45
31 4 0.13
ACGTcount: A:0.27, C:0.14, G:0.03, T:0.56
Consensus pattern (25 bp):
TTTTATTACTTTCACTTATATACTA
Found at i:60263836 original size:13 final size:13
Alignment explanation
Indices: 60263799--60263837 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
60263789 AATTTGTTAG
60263799 ATTTTTATATATAT
1 ATTTTTATAT-TAT
*
60263813 ATTTTCAATATTAT
1 ATTTT-TATATTAT
60263827 ATTTTTATATT
1 ATTTTTATATT
60263838 TTTTTTTTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
13 5 0.23
14 13 0.59
15 4 0.18
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (13 bp):
ATTTTTATATTAT
Found at i:60264481 original size:14 final size:14
Alignment explanation
Indices: 60264460--60264493 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
60264450 TAGTATGGGT
60264460 TTAT-GGGTTTTGG
1 TTATAGGGTTTTGG
60264473 TTATAGGGTTTTGG
1 TTATAGGGTTTTGG
60264487 TTATAGG
1 TTATAGG
60264494 CAAATGATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.15, C:0.00, G:0.35, T:0.50
Consensus pattern (14 bp):
TTATAGGGTTTTGG
Found at i:60264650 original size:23 final size:23
Alignment explanation
Indices: 60264622--60264668 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
60264612 AGAGGAAAGT
60264622 TTAAATAACATAAAAGGAAAAAA
1 TTAAATAACATAAAAGGAAAAAA
* *
60264645 TTAAATTACTTAAAAGGAAAAAA
1 TTAAATAACATAAAAGGAAAAAA
60264668 T
1 T
60264669 ATAGGGATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.64, C:0.04, G:0.09, T:0.23
Consensus pattern (23 bp):
TTAAATAACATAAAAGGAAAAAA
Found at i:60266011 original size:57 final size:57
Alignment explanation
Indices: 60265948--60266071 Score: 151
Period size: 59 Copynumber: 2.1 Consensus size: 57
60265938 GATAAAATTG
* * * *
60265948 AATAGTTGGATAACCATTTTGTAAC-TCATATTTAGGTGGCCAAAATAGAAATTTACT
1 AATAGTTGGATAA-CATTTTGTAACTTCATAGTTAGATGACCAAAAAAGAAATTTACT
* * *
60266005 AATAGTTGGATGATATTTTGTAACTTTTCATAGTTAGATGACTAAAAAAGAAATTTACT
1 AATAGTTGGATAACATTTTGTAAC--TTCATAGTTAGATGACCAAAAAAGAAATTTACT
60266064 AATAGTTG
1 AATAGTTG
60266072 ACTGACTACT
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
56 10 0.18
57 12 0.21
59 35 0.61
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (57 bp):
AATAGTTGGATAACATTTTGTAACTTCATAGTTAGATGACCAAAAAAGAAATTTACT
Found at i:60266353 original size:2 final size:2
Alignment explanation
Indices: 60266346--60266387 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
60266336 TGTTTAATCC
60266346 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
60266388 TTTCGGTTAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:60267241 original size:15 final size:15
Alignment explanation
Indices: 60267223--60267274 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
60267213 AGAGGAAGAG
*
60267223 GAGGAAGTGGAAGTT
1 GAGGAAGTGGAAGTA
* * *
60267238 GAGGAAGAGGTAGAA
1 GAGGAAGTGGAAGTA
60267253 GAGGAAGTGGAAGTA
1 GAGGAAGTGGAAGTA
*
60267268 GAAGAAG
1 GAGGAAG
60267275 AAGAAGAGGA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.42, C:0.00, G:0.46, T:0.12
Consensus pattern (15 bp):
GAGGAAGTGGAAGTA
Found at i:60267246 original size:24 final size:24
Alignment explanation
Indices: 60267214--60267260 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
60267204 TGAAGAAATA
*
60267214 GAGGAAGAGG-AGGAAGTGGAAGTT
1 GAGGAAGAGGTA-GAAGAGGAAGTT
60267238 GAGGAAGAGGTAGAAGAGGAAGT
1 GAGGAAGAGGTAGAAGAGGAAGT
60267261 GGAAGTAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.40, C:0.00, G:0.49, T:0.11
Consensus pattern (24 bp):
GAGGAAGAGGTAGAAGAGGAAGTT
Found at i:60267257 original size:30 final size:30
Alignment explanation
Indices: 60267213--60267281 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
60267203 ATGAAGAAAT
* * *
60267213 AGAGGAAGAGGAGGAAGTGGAAGTTGAGGA
1 AGAGGAAGAAGAGGAAGTGGAAGTAGAAGA
*
60267243 AGAGGTAGAAGAGGAAGTGGAAGTAGAAGA
1 AGAGGAAGAAGAGGAAGTGGAAGTAGAAGA
*
60267273 AGAAGAAGA
1 AGAGGAAGA
60267282 GGACGAGGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.46, C:0.00, G:0.45, T:0.09
Consensus pattern (30 bp):
AGAGGAAGAAGAGGAAGTGGAAGTAGAAGA
Found at i:60278039 original size:16 final size:17
Alignment explanation
Indices: 60278008--60278040 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
60277998 TATGAAAACA
*
60278008 AATTTAAAATTTTATTT
1 AATTGAAAATTTTATTT
60278025 AATTGAAAA-TTTATTT
1 AATTGAAAATTTTATTT
60278041 TTTAAGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (17 bp):
AATTGAAAATTTTATTT
Found at i:60282915 original size:19 final size:19
Alignment explanation
Indices: 60282893--60282949 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
60282883 ATAGTATATG
60282893 AATTTTTTTATTATATTTA
1 AATTTTTTTATTATATTTA
* *
60282912 AATTTTTATA-TA-AATTA
1 AATTTTTTTATTATATTTA
* *
60282929 ATATATTTTAATTATATTTA
1 A-ATTTTTTTATTATATTTA
60282949 A
1 A
60282950 CAATTCGAGT
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
17 5 0.17
18 8 0.28
19 11 0.38
20 5 0.17
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
AATTTTTTTATTATATTTA
Found at i:60306232 original size:18 final size:18
Alignment explanation
Indices: 60306209--60306243 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
60306199 ATCGGTTAAA
*
60306209 ATAAAAATATTTAAATTC
1 ATAAAAATAATTAAATTC
*
60306227 ATAAAACTAATTAAATT
1 ATAAAAATAATTAAATT
60306244 ATATATTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (18 bp):
ATAAAAATAATTAAATTC
Found at i:60306575 original size:19 final size:19
Alignment explanation
Indices: 60306551--60306587 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
60306541 ATAAATTTAT
*
60306551 TTTTACATATACCTACAAA
1 TTTTACATATACCAACAAA
60306570 TTTTACATATACCAACAA
1 TTTTACATATACCAACAA
60306588 TTAATTTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.43, C:0.22, G:0.00, T:0.35
Consensus pattern (19 bp):
TTTTACATATACCAACAAA
Found at i:60306834 original size:33 final size:33
Alignment explanation
Indices: 60306797--60306862 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
60306787 AAATGAAATT
60306797 TTAATTTTAGCTCAATTATACATATACCAACAA
1 TTAATTTTAGCTCAATTATACATATACCAACAA
*
60306830 TTAATTTTAGCTCAATTATACATATACCTACAA
1 TTAATTTTAGCTCAATTATACATATACCAACAA
60306863 ATTTTAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.41, C:0.18, G:0.03, T:0.38
Consensus pattern (33 bp):
TTAATTTTAGCTCAATTATACATATACCAACAA
Found at i:60308741 original size:49 final size:49
Alignment explanation
Indices: 60308686--60308789 Score: 163
Period size: 49 Copynumber: 2.1 Consensus size: 49
60308676 TCATGTGTTA
* * * *
60308686 TAATTTTATATAGTGTTGAGCTTTTAATTCATGATATTTAACTTAATTT
1 TAATTTTATAAAGTGTTCACCTTTTAATTCATGATATTAAACTTAATTT
*
60308735 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
1 TAATTTTATAAAGTGTTCACCTTTTAATTCATGATATTAAACTTAATTT
60308784 TAATTT
1 TAATTT
60308790 GTTTTTTTCT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.32, C:0.08, G:0.09, T:0.52
Consensus pattern (49 bp):
TAATTTTATAAAGTGTTCACCTTTTAATTCATGATATTAAACTTAATTT
Found at i:60310157 original size:15 final size:16
Alignment explanation
Indices: 60310129--60310158 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
60310119 TAAATTCATA
60310129 TAAGAATATTTATTAT
1 TAAGAATATTTATTAT
60310145 TAAGAAT-TTTATTA
1 TAAGAATATTTATTA
60310159 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (16 bp):
TAAGAATATTTATTAT
Found at i:60310169 original size:61 final size:61
Alignment explanation
Indices: 60310099--60310289 Score: 221
Period size: 61 Copynumber: 3.2 Consensus size: 61
60310089 ATTTTATAGT
60310099 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAA
1 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAA
* * ** * * * * * * *
60310160 ATTATATATTTTAATTAAATTATATTTA-ATAATAATTATTT-TAAATT-A-TATTTTA-TAGT
1 ATTATATATTATGATTTTAGTAAATTCATATAAGAA-TATTTAT-TATTAAGAATTTTATTA-A
60310219 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAA
1 ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAA
60310280 ATTATATATT
1 ATTATATATT
60310290 TTTATTAAAT
Statistics
Matches: 100, Mismatches: 22, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
58 2 0.02
59 35 0.35
60 16 0.16
61 45 0.45
62 2 0.02
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.52
Consensus pattern (61 bp):
ATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTATTATTAAGAATTTTATTAA
Found at i:60310178 original size:18 final size:17
Alignment explanation
Indices: 60310150--60310184 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
60310140 ATTATTAAGA
60310150 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
60310167 ATTTTAATTAAATTATAT
1 ATTTT-ATTAAATTATAT
60310185 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:60310192 original size:18 final size:18
Alignment explanation
Indices: 60310155--60310203 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
60310145 TAAGAATTTT
*
60310155 ATTAAATTATATATT-TTA
1 ATTAAATTATAT-TTAATA
60310173 ATTAAATTATATTTAATA
1 ATTAAATTATATTTAATA
60310191 A-T-AATTAT-TTTAA
1 ATTAAATTATATTTAA
60310204 ATTATATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
15 5 0.17
16 6 0.21
17 3 0.10
18 15 0.52
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTAAATTATATTTAATA
Found at i:60310196 original size:120 final size:120
Alignment explanation
Indices: 60310062--60310329 Score: 509
Period size: 120 Copynumber: 2.2 Consensus size: 120
60310052 ATTCTCAAGT
60310062 TATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCA
1 TATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCA
60310127 TATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTA
66 TATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTA
60310182 TATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCA
1 TATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCA
*
60310247 TATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTTATTAAATTA
66 TATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTA
* *
60310302 TATTTAATAATAATTATGTTAAAATATA
1 TATTTAATAATAATTATTTTAAATTATA
60310330 ATTAAATTAT
Statistics
Matches: 145, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 145 1.00
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (120 bp):
TATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCA
TATAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAATTAAATTA
Found at i:60310277 original size:15 final size:16
Alignment explanation
Indices: 60310249--60310278 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
60310239 TAAATTCATA
60310249 TAAGAATATTTATTAT
1 TAAGAATATTTATTAT
60310265 TAAGAAT-TTTATTA
1 TAAGAATATTTATTA
60310279 AATTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (16 bp):
TAAGAATATTTATTAT
Found at i:60310564 original size:16 final size:16
Alignment explanation
Indices: 60310545--60310575 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
60310535 CCTATTATGT
60310545 CTCTATTCCATTACAC
1 CTCTATTCCATTACAC
*
60310561 CTCTATTTCATTACA
1 CTCTATTCCATTACA
60310576 GCGAACCAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.32, G:0.00, T:0.42
Consensus pattern (16 bp):
CTCTATTCCATTACAC
Found at i:60312546 original size:21 final size:18
Alignment explanation
Indices: 60312515--60312580 Score: 62
Period size: 19 Copynumber: 3.4 Consensus size: 18
60312505 TATTTTAGAT
60312515 TTTTTAAAATTTTTTATATA
1 TTTTT-AAATTTTTTA-ATA
60312535 TTCTTTAGAA-TTTTTAATA
1 TT-TTTA-AATTTTTTAATA
* *
60312554 TTTTTAAATTTCTGTAATT
1 TTTTTAAATTT-TTTAATA
60312573 TTTTTAAA
1 TTTTTAAA
60312581 AAATATACAT
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
17 2 0.05
18 6 0.15
19 18 0.45
20 9 0.22
21 5 0.12
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (18 bp):
TTTTTAAATTTTTTAATA
Found at i:60313398 original size:18 final size:17
Alignment explanation
Indices: 60313365--60313401 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
60313355 ATCCGATCCG
60313365 ATTTAAATATAATTTTA
1 ATTTAAATATAATTTTA
*
60313382 ATTTAAATTTGAATTTTA
1 ATTTAAATAT-AATTTTA
60313400 AT
1 AT
60313402 AAAGGACTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (17 bp):
ATTTAAATATAATTTTA
Found at i:60316349 original size:22 final size:23
Alignment explanation
Indices: 60316299--60316349 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
60316289 TATTCTGCTG
60316299 TTATT-TTACTATCATTTTATTA
1 TTATTATTACTATCATTTTATTA
* *
60316321 TTA-TATTGCTATTATTTTATT-
1 TTATTATTACTATCATTTTATTA
60316342 TTATTATT
1 TTATTATT
60316350 TAGATATTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 4 0.16
22 21 0.84
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.67
Consensus pattern (23 bp):
TTATTATTACTATCATTTTATTA
Found at i:60321130 original size:31 final size:29
Alignment explanation
Indices: 60321092--60321165 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
60321082 ACTACCAAAA
* *
60321092 TAGTCACTTTTGTTTGACTCAGGTTACATTT
1 TAGTCACTTATGTTTGA--AAGGTTACATTT
* *
60321123 TAGTCACTTATGTTTGAAATGTTACGTTT
1 TAGTCACTTATGTTTGAAAGGTTACATTT
60321152 TAGTCACTTATGTT
1 TAGTCACTTATGTT
60321166 ATCACATTGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 23 0.59
31 16 0.41
ACGTcount: A:0.22, C:0.14, G:0.16, T:0.49
Consensus pattern (29 bp):
TAGTCACTTATGTTTGAAAGGTTACATTT
Found at i:60321187 original size:31 final size:29
Alignment explanation
Indices: 60321117--60321190 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
60321107 GACTCAGGTT
* *
60321117 ACATTTTAGTCACTTATGTTTGAAATGTT
1 ACATTTTAGTCACTTATGTTTCAAATGTA
* *
60321146 ACGTTTTAGTCACTTATGTTATCACATTGTA
1 ACATTTTAGTCACTTATGTT-TCA-AATGTA
60321177 ACATTTTAGTCACT
1 ACATTTTAGTCACT
60321191 GAGCCGTTAG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
29 19 0.50
30 2 0.05
31 17 0.45
ACGTcount: A:0.27, C:0.15, G:0.12, T:0.46
Consensus pattern (29 bp):
ACATTTTAGTCACTTATGTTTCAAATGTA
Found at i:60321801 original size:29 final size:29
Alignment explanation
Indices: 60321754--60321823 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 29
60321744 CACGATAACG
60321754 TAAGTGACTAAAACATAACATT-TCAAACA
1 TAAGTGACTAAAACATAAC-TTGTCAAACA
**
60321783 TAAGTGACTAAAATGTAACTTGAGTCAAACA
1 TAAGTGACTAAAACATAACTT--GTCAAACA
*
60321814 AAAGTGACTA
1 TAAGTGACTA
60321824 TTTTGATACT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
28 2 0.06
29 17 0.49
31 16 0.46
ACGTcount: A:0.49, C:0.14, G:0.13, T:0.24
Consensus pattern (29 bp):
TAAGTGACTAAAACATAACTTGTCAAACA
Found at i:60323569 original size:3 final size:3
Alignment explanation
Indices: 60323561--60323609 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
60323551 ACCTATAACC
60323561 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
60323609 A
1 A
60323610 GAAGTTGATA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:60323663 original size:18 final size:18
Alignment explanation
Indices: 60323628--60323663 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
60323618 TAACATTTAA
* *
60323628 AGTGAGATTTTATTATAT
1 AGTGAGATTTCATGATAT
60323646 AGTGAGATTTCATGATAT
1 AGTGAGATTTCATGATAT
60323664 CGTTTTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.03, G:0.19, T:0.44
Consensus pattern (18 bp):
AGTGAGATTTCATGATAT
Found at i:60326153 original size:2 final size:2
Alignment explanation
Indices: 60326146--60326198 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
60326136 NNNNNNNNNN
60326146 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
60326188 TA TA TA TA TA T
1 TA TA TA TA TA T
60326199 CGAACTGATC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:60335385 original size:29 final size:30
Alignment explanation
Indices: 60335334--60335390 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
60335324 AGAATTGGAG
* *
60335334 CAAATTAAGATTTCATGTTTAAAATTATTC
1 CAAATTAAGAATTCATGTATAAAATTATTC
60335364 CAAATTAA-AATTCATGTATAAAATTAT
1 CAAATTAAGAATTCATGTATAAAATTAT
60335391 ATATTAAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 17 0.68
30 8 0.32
ACGTcount: A:0.46, C:0.09, G:0.05, T:0.40
Consensus pattern (30 bp):
CAAATTAAGAATTCATGTATAAAATTATTC
Found at i:60344927 original size:122 final size:127
Alignment explanation
Indices: 60344791--60345038 Score: 344
Period size: 122 Copynumber: 2.0 Consensus size: 127
60344781 TACAATACCC
* * *
60344791 TTATAGGACATTTAGTAACCCATTGACTTTGCTTGTGAAGTTTAAAAGTTCCGCTAGTAGTGTAC
1 TTATAGGACATTTAGTAACCCATTGACTTTACTTGTGAAGTTTAAAAGCTCCACTAGTAGTGTAC
*
60344856 AAAATA-TATATTT-TTTA-T-T-TTATTAATAATATTTATTTATTGCTACCGTTATTTATT
66 AAAATATTATATTTCTTTATTATGTTATTAATAATATTTATTTACTGCTACCGTTATTTATT
* * *
60344913 TTATAGGACATTTAGTAACCCCTTGACTTTACTTGTGGAGTTTAAAAGCTCCACTGGTAGTGTAC
1 TTATAGGACATTTAGTAACCCATTGACTTTACTTGTGAAGTTTAAAAGCTCCACTAGTAGTGTAC
* * * *
60344978 TAAATATTTTTTTTCTTTATTTTATGTTATTAATAATATTTATTTACTGCTATCGTTATTT
66 AAAATATTATATTTCTTTA--TTATGTTATTAATAATATTTATTTACTGCTACCGTTATTT
60345039 TTAGATAAAT
Statistics
Matches: 108, Mismatches: 11, Indels: 7
0.86 0.09 0.06
Matches are distributed among these distances:
122 64 0.59
123 5 0.05
124 4 0.04
127 1 0.01
128 1 0.01
129 33 0.31
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.48
Consensus pattern (127 bp):
TTATAGGACATTTAGTAACCCATTGACTTTACTTGTGAAGTTTAAAAGCTCCACTAGTAGTGTAC
AAAATATTATATTTCTTTATTATGTTATTAATAATATTTATTTACTGCTACCGTTATTTATT
Found at i:60345378 original size:17 final size:18
Alignment explanation
Indices: 60345350--60345389 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
60345340 TTGATTTGAT
60345350 TAAATAAAATAAAATTTA
1 TAAATAAAATAAAATTTA
*
60345368 TAAAT-AAATAAATTTTA
1 TAAATAAAATAAAATTTA
*
60345385 AAAAT
1 TAAAT
60345390 TAGTACTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
TAAATAAAATAAAATTTA
Found at i:60348537 original size:34 final size:35
Alignment explanation
Indices: 60348499--60348565 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
60348489 CAGTAAAATA
*
60348499 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
60348533 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
60348566 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:60348539 original size:20 final size:20
Alignment explanation
Indices: 60348514--60348553 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
60348504 CGTAAAATGA
*
60348514 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
60348534 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
60348554 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:60348569 original size:14 final size:15
Alignment explanation
Indices: 60348493--60348569 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
60348483 GATTGCCAGT
* *
60348493 AAAAT-ATTTTCCGT
1 AAAATGATTTTCTGG
60348507 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
60348521 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
60348541 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
60348556 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
60348570 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 24 0.48
15 12 0.24
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:60350496 original size:40 final size:40
Alignment explanation
Indices: 60350429--60350547 Score: 105
Period size: 51 Copynumber: 2.7 Consensus size: 40
60350419 TTATATTATT
* *
60350429 ATTTTTAAATTAAAAAAT-ATAAGATATATTTATTTAAATA
1 ATTTTTAAA-TAAAAAATAAAAATATATATTTATTTAAATA
60350469 ATTTTTAAATAAAAAATAAAAATATATAATACAATCACATTTATTTAAATA
1 ATTTTTAAATAAAAAAT--AAA-A-AT-AT---AT---ATTTATTTAAATA
60350520 ATTTTTAAATAAAAAATAAAAATATATA
1 ATTTTTAAATAAAAAATAAAAATATATA
60350548 ATACGATCAT
Statistics
Matches: 65, Mismatches: 2, Indels: 24
0.71 0.02 0.26
Matches are distributed among these distances:
39 8 0.12
40 10 0.15
42 1 0.02
43 3 0.05
44 1 0.02
45 2 0.03
46 2 0.03
47 2 0.03
48 3 0.05
49 3 0.05
51 30 0.46
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (40 bp):
ATTTTTAAATAAAAAATAAAAATATATATTTATTTAAATA
Found at i:60350563 original size:51 final size:51
Alignment explanation
Indices: 60350456--60350556 Score: 193
Period size: 51 Copynumber: 2.0 Consensus size: 51
60350446 TATAAGATAT
60350456 ATTTATTTAAATAATTTTTAAATAAAAAATAAAAATATATAATACAATCAC
1 ATTTATTTAAATAATTTTTAAATAAAAAATAAAAATATATAATACAATCAC
*
60350507 ATTTATTTAAATAATTTTTAAATAAAAAATAAAAATATATAATACGATCA
1 ATTTATTTAAATAATTTTTAAATAAAAAATAAAAATATATAATACAATCA
60350557 TGTTTATATT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.56, C:0.05, G:0.01, T:0.38
Consensus pattern (51 bp):
ATTTATTTAAATAATTTTTAAATAAAAAATAAAAATATATAATACAATCAC
Found at i:60350624 original size:16 final size:16
Alignment explanation
Indices: 60350589--60350621 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
60350579 ATTTAGATTA
*
60350589 TTAAGTCAAACTAAAT
1 TTAAATCAAACTAAAT
60350605 TTAAATCAAA-TAAAT
1 TTAAATCAAACTAAAT
60350620 TT
1 TT
60350622 TAATATATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.52, C:0.09, G:0.03, T:0.36
Consensus pattern (16 bp):
TTAAATCAAACTAAAT
Found at i:60366011 original size:18 final size:17
Alignment explanation
Indices: 60365988--60366033 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
60365978 CTAATCAAAT
*
60365988 AAATTATAAAAATTTACA
1 AAATTATAAAAAATTA-A
*
60366006 AAATTAGAAAAAATTAA
1 AAATTATAAAAAATTAA
*
60366023 AAATTTTAAAA
1 AAATTATAAAA
60366034 TCGGATTCAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (17 bp):
AAATTATAAAAAATTAA
Found at i:60368309 original size:16 final size:16
Alignment explanation
Indices: 60368285--60368318 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
60368275 TTGTTGGTTC
*
60368285 AATTAAAAATTATTAA
1 AATTAAAAAATATTAA
*
60368301 AATTTAAAAATATTAA
1 AATTAAAAAATATTAA
60368317 AA
1 AA
60368319 AATCCTGATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AATTAAAAAATATTAA
Found at i:60369649 original size:22 final size:23
Alignment explanation
Indices: 60369621--60369663 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
60369611 CATCTAATTC
60369621 AACCATGTAGAAACT-ACAAAAG
1 AACCATGTAGAAACTGACAAAAG
*
60369643 AACCATGTAGGAACTGACAAA
1 AACCATGTAGAAACTGACAAA
60369664 CAATCACATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.51, C:0.19, G:0.16, T:0.14
Consensus pattern (23 bp):
AACCATGTAGAAACTGACAAAAG
Found at i:60374319 original size:154 final size:155
Alignment explanation
Indices: 60374034--60374578 Score: 607
Period size: 154 Copynumber: 3.5 Consensus size: 155
60374024 ATCAGAGTAA
* * * * *
60374034 CTTGATCATGAATTATATCTAATATTGATGCAAATAGATAACAATGAAGAAGGTAAAATCCTATT
1 CTTGATCATGAATTAAATCTAATAGTCATGCAAATAGATAACAATGAAGAAGGAAAAAGCCTATT
* * *
60374099 TTAAGCCCTCAAACAAGTTTATCTTCTATCTTATGCGGACCCACGATTCAGGTACGTGTTTCTAC
66 TCAAGCCCTCAAACAAGTTTATCTTCTATCTTATGTGGACCCATGATTCAGGTACGTGTTTCTAC
*
60374164 TCAATAAAATGATCCAT-TGGATAG
131 TCAATAAAAAGATCCATCTGGATAG
* * * *
60374188 CTTGATGATGAATTAAATCTAATAGTCAAGCGAACAGATAACAATGAAGAAGGAAAAAGCCTATT
1 CTTGATCATGAATTAAATCTAATAGTCATGCAAATAGATAACAATGAAGAAGGAAAAAGCCTATT
* * * * * ** *
60374253 TCAAGTCCTCAAACAAGTTTATCTTCTATCTTAAGTGGACTCTTGATT-AGGATACATAATTGTA
66 TCAAGCCCTCAAACAAGTTTATCTTCTATCTTATGTGGACCCATGATTCAGG-TACGTGTTTCTA
*
60374317 CTCAATAAAACAAAAT-CATCT-GACTAG
130 CTCAAT-AAA-AAGATCCATCTGGA-TAG
* * * * * * * * * * *
60374344 CTTGATCATTAATGAAATCAAATATTCACGCAAATAGGTGACGATGAAGAAGGTAAAATCCCATT
1 CTTGATCATGAATTAAATCTAATAGTCATGCAAATAGATAACAATGAAGAAGGAAAAAGCCTATT
* **
60374409 TCAAGCCCTCAAACAAGTTTATC-T-TATCTTATGTGGACCCATGATTCAAGCCCGTGTTTCTAC
66 TCAAGCCCTCAAACAAGTTTATCTTCTATCTTATGTGGACCCATGATTCAGGTACGTGTTTCTAC
*
60374472 TCAATAAAACAGAACCATCTGGATAG
131 TCAATAAAA-AGATCCATCTGGATAG
* *** * *
60374498 CTTGATAATGAATTAAATCTAATAGTCATGTGGAGAGATGACAATGAAGAAGGAAAAAGCCTATT
1 CTTGATCATGAATTAAATCTAATAGTCATGCAAATAGATAACAATGAAGAAGGAAAAAGCCTATT
*
60374563 TCAAGTCCTCAAACAA
66 TCAAGCCCTCAAACAA
60374579 CTACCTTAAG
Statistics
Matches: 317, Mismatches: 65, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
152 1 0.00
153 8 0.03
154 215 0.68
155 13 0.04
156 80 0.25
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (155 bp):
CTTGATCATGAATTAAATCTAATAGTCATGCAAATAGATAACAATGAAGAAGGAAAAAGCCTATT
TCAAGCCCTCAAACAAGTTTATCTTCTATCTTATGTGGACCCATGATTCAGGTACGTGTTTCTAC
TCAATAAAAAGATCCATCTGGATAG
Found at i:60374573 original size:310 final size:299
Alignment explanation
Indices: 60374011--60374734 Score: 912
Period size: 310 Copynumber: 2.4 Consensus size: 299
60374001 ATAGTACTTG
* * * * * * * *
60374011 ATAAAACAGAATGATCAGAGTAACTTGATCATGAATTATATCTAATATTGATGCAAATAGATAAC
1 ATAAAACAGAATCATCAGAATAGCTTGATCATGAATAAAATCAAATATTCATGCAAATAGATGAC
* * *
60374076 AATGAAGAAGGTAAAATCCTATTTTAAGCCCTCAAACAAGTTTATCTTCTATCTTATGCGGACCC
66 GATGAAGAAGGTAAAATCCCATTTCAAGCCCTCAAACAAGTTTATC-T-TATCTTATGCGGACCC
* * * * *
60374141 ACGATTCAGGTACGTGTTTCTACTCAATAAAATGATCCATTGGATAGCTTGATGATGAATTAAAT
129 ACGATTCAAGCACGTGTTTCTACTCAATAAAAAGAACCATTGGATAGCTTGATAATGAATTAAAT
60374206 CTAATAGTCAAGCGAACAGATAACAATGAAGAAGGAAAAAGCCTATTTCAAGTCCTCAAACAAGT
194 CTAATAGTCAAGCGAACAGATAACAATGAAGAAGGAAAAAGCCTATTTCAAGTCCTCAAAC-A--
*
60374271 TTATCTTCTATCTTAAGTGGACTCT-TGATTAGGATACATAATTGTACTCA
256 --A----CTACCTTAAGTGGA-TCTGTGATTAGGATACATAATTGTACTCA
* * * * * * *
60374321 ATAAAACAAAATCATCTGACTAGCTTGATCATTAATGAAATCAAATATTCACGCAAATAGGTGAC
1 ATAAAACAGAATCATCAGAATAGCTTGATCATGAATAAAATCAAATATTCATGCAAATAGATGAC
* *
60374386 GATGAAGAAGGTAAAATCCCATTTCAAGCCCTCAAACAAGTTTATCTTATCTTATGTGGACCCAT
66 GATGAAGAAGGTAAAATCCCATTTCAAGCCCTCAAACAAGTTTATCTTATCTTATGCGGACCCAC
*
60374451 GATTCAAGCCCGTGTTTCTACTCAATAAAACAGAACCATCTGGATAGCTTGATAATGAATTAAAT
131 GATTCAAGCACGTGTTTCTACTCAATAAAA-AGAACCAT-TGGATAGCTTGATAATGAATTAAAT
* * * * *
60374516 CTAATAGTCATGTGGAGAGATGACAATGAAGAAGGAAAAAGCCTATTTCAAGTCCTCAAACAACT
194 CTAATAGTCAAGCGAACAGATAACAATGAAGAAGGAAAAAGCCTATTTCAAGTCCTCAAACAACT
* * ** *
60374581 ACCTTAAGTGGATTTGTGATTAGGGTACATGCTTGTACTCG
259 ACCTTAAGTGGATCTGTGATTAGGATACATAATTGTACTCA
* *
60374622 ATAAAACAGAACCATCCA-AATAGCTAGATCATGAATAAAATCAAATATTCATGCAAATAGATGA
1 ATAAAACAGAATCAT-CAGAATAGCTTGATCATGAATAAAATCAAATATTCATGCAAATAGATGA
* * * *
60374686 TGATGAAGAAGGTAAATTCCCATTTCATGTCCTCAAACAAGTTTATCTT
65 CGATGAAGAAGGTAAAATCCCATTTCAAGCCCTCAAACAAGTTTATCTT
60374735 CTTCTATCTT
Statistics
Matches: 362, Mismatches: 48, Indels: 17
0.85 0.11 0.04
Matches are distributed among these distances:
300 2 0.01
301 132 0.36
302 1 0.00
305 1 0.00
308 43 0.12
309 8 0.02
310 175 0.48
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (299 bp):
ATAAAACAGAATCATCAGAATAGCTTGATCATGAATAAAATCAAATATTCATGCAAATAGATGAC
GATGAAGAAGGTAAAATCCCATTTCAAGCCCTCAAACAAGTTTATCTTATCTTATGCGGACCCAC
GATTCAAGCACGTGTTTCTACTCAATAAAAAGAACCATTGGATAGCTTGATAATGAATTAAATCT
AATAGTCAAGCGAACAGATAACAATGAAGAAGGAAAAAGCCTATTTCAAGTCCTCAAACAACTAC
CTTAAGTGGATCTGTGATTAGGATACATAATTGTACTCA
Found at i:60380410 original size:58 final size:57
Alignment explanation
Indices: 60380343--60380481 Score: 143
Period size: 57 Copynumber: 2.4 Consensus size: 57
60380333 TTCCAGGGCT
* * * * *
60380343 TGAATTTTTTTTGTCCAAGTTAGTATCTAAACTTGACGATTATTTCCACATTGGGGTC
1 TGAACTTTTTTTGTCCAAGTTAGTACCTAAACTTAACGACT-GTTCCACATTGGGGTC
* ** * * *
60380401 TGAACTTTTTTTATCCAAGTTAGCCCCTGAACTTAATGACTGTTCCATATTGGGGTC
1 TGAACTTTTTTTGTCCAAGTTAGTACCTAAACTTAACGACTGTTCCACATTGGGGTC
* * *
60380458 TAAACTTTTTTGGTCCAAATTAGT
1 TGAACTTTTTTTGTCCAAGTTAGT
60380482 CTCTGATATT
Statistics
Matches: 65, Mismatches: 16, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
57 33 0.51
58 32 0.49
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.42
Consensus pattern (57 bp):
TGAACTTTTTTTGTCCAAGTTAGTACCTAAACTTAACGACTGTTCCACATTGGGGTC
Found at i:60383712 original size:29 final size:30
Alignment explanation
Indices: 60383679--60383745 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 30
60383669 CTTAACAAGC
*
60383679 CAATGACTTAAAT-AAACTTTCGAATAGTT
1 CAATGACTTAAATAAAACTTTCGAATAATT
60383708 CAATGACTTAAATGAAAACTTTCGAATAATT
1 CAATGACTTAAAT-AAAACTTTCGAATAATT
*
60383739 CAGTGAC
1 CAATGAC
60383746 CATTTTGTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 13 0.38
31 21 0.62
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (30 bp):
CAATGACTTAAATAAAACTTTCGAATAATT
Found at i:60384595 original size:283 final size:283
Alignment explanation
Indices: 60384088--60384657 Score: 1140
Period size: 283 Copynumber: 2.0 Consensus size: 283
60384078 ACATGGTCGA
60384088 TTAAGGGTTATAGATGAAAGTCGAGCACATTGGTCATGGCACCGCAACAATGACTCCCAAGCACT
1 TTAAGGGTTATAGATGAAAGTCGAGCACATTGGTCATGGCACCGCAACAATGACTCCCAAGCACT
60384153 TGTTGCCGACCAGGTTTGGCTACAAATTAAGTTTAACTACGATCAAACCGTGTTGGCTGTCTACA
66 TGTTGCCGACCAGGTTTGGCTACAAATTAAGTTTAACTACGATCAAACCGTGTTGGCTGTCTACA
60384218 GTCCATAAAGACGGCTCATACATTAAAAATGATGAACTACAAAGTAATTATGTATATACATCGGA
131 GTCCATAAAGACGGCTCATACATTAAAAATGATGAACTACAAAGTAATTATGTATATACATCGGA
60384283 TATTGAGTGTTCCGAAGGGGATGCTAATACCTTTGTTTGTACTATAAATTATATATTACACTATC
196 TATTGAGTGTTCCGAAGGGGATGCTAATACCTTTGTTTGTACTATAAATTATATATTACACTATC
60384348 AGATTAATATTTAATGATAGTAT
261 AGATTAATATTTAATGATAGTAT
60384371 TTAAGGGTTATAGATGAAAGTCGAGCACATTGGTCATGGCACCGCAACAATGACTCCCAAGCACT
1 TTAAGGGTTATAGATGAAAGTCGAGCACATTGGTCATGGCACCGCAACAATGACTCCCAAGCACT
60384436 TGTTGCCGACCAGGTTTGGCTACAAATTAAGTTTAACTACGATCAAACCGTGTTGGCTGTCTACA
66 TGTTGCCGACCAGGTTTGGCTACAAATTAAGTTTAACTACGATCAAACCGTGTTGGCTGTCTACA
60384501 GTCCATAAAGACGGCTCATACATTAAAAATGATGAACTACAAAGTAATTATGTATATACATCGGA
131 GTCCATAAAGACGGCTCATACATTAAAAATGATGAACTACAAAGTAATTATGTATATACATCGGA
60384566 TATTGAGTGTTCCGAAGGGGATGCTAATACCTTTGTTTGTACTATAAATTATATATTACACTATC
196 TATTGAGTGTTCCGAAGGGGATGCTAATACCTTTGTTTGTACTATAAATTATATATTACACTATC
60384631 AGATTAATATTTAATGATAGTAT
261 AGATTAATATTTAATGATAGTAT
60384654 TTAA
1 TTAA
60384658 ATGCATTGTA
Statistics
Matches: 287, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
283 287 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.31
Consensus pattern (283 bp):
TTAAGGGTTATAGATGAAAGTCGAGCACATTGGTCATGGCACCGCAACAATGACTCCCAAGCACT
TGTTGCCGACCAGGTTTGGCTACAAATTAAGTTTAACTACGATCAAACCGTGTTGGCTGTCTACA
GTCCATAAAGACGGCTCATACATTAAAAATGATGAACTACAAAGTAATTATGTATATACATCGGA
TATTGAGTGTTCCGAAGGGGATGCTAATACCTTTGTTTGTACTATAAATTATATATTACACTATC
AGATTAATATTTAATGATAGTAT
Found at i:60386007 original size:3 final size:3
Alignment explanation
Indices: 60385999--60386033 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
60385989 CACCGAGTCG
* *
60385999 GTT GTT GTT GTT GTT GTT GTT GCT GTT GCT GTT GT
1 GTT GTT GTT GTT GTT GTT GTT GTT GTT GTT GTT GT
60386034 GGTTTCTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.06, G:0.34, T:0.60
Consensus pattern (3 bp):
GTT
Found at i:60387694 original size:17 final size:17
Alignment explanation
Indices: 60387672--60387705 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
60387662 TTTGTTTATT
60387672 ACATATTATATAAATTA
1 ACATATTATATAAATTA
* *
60387689 ACATATTTTATTAATTA
1 ACATATTATATAAATTA
60387706 GACAGTTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (17 bp):
ACATATTATATAAATTA
Found at i:60389453 original size:5 final size:5
Alignment explanation
Indices: 60389417--60389450 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
60389407 AAAATTTCAC
*
60389417 TCGAT TCGAT TCGAT TCGAT TCGAT TCGAC TCGA
1 TCGAT TCGAT TCGAT TCGAT TCGAT TCGAT TCGA
60389451 CTCATTTCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.35
Consensus pattern (5 bp):
TCGAT
Found at i:60391864 original size:25 final size:25
Alignment explanation
Indices: 60391825--60391912 Score: 115
Period size: 25 Copynumber: 3.6 Consensus size: 25
60391815 ATTAGGGCCA
60391825 CCGTT-TTCAGCTCTTATGAGCTTC
1 CCGTTATTCAGCTCTTATGAGCTTC
* *
60391849 CCATTATTCAGATCTTATGAGCTTC
1 CCGTTATTCAGCTCTTATGAGCTTC
** **
60391874 ATGTTATTCAGCTCGCATGAGCTTC
1 CCGTTATTCAGCTCTTATGAGCTTC
60391899 CCGTTATTCAGCTC
1 CCGTTATTCAGCTC
60391913 GAAAGAGCTT
Statistics
Matches: 53, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
24 4 0.08
25 49 0.92
ACGTcount: A:0.18, C:0.27, G:0.16, T:0.39
Consensus pattern (25 bp):
CCGTTATTCAGCTCTTATGAGCTTC
Found at i:60391913 original size:25 final size:25
Alignment explanation
Indices: 60391825--60391944 Score: 109
Period size: 25 Copynumber: 4.9 Consensus size: 25
60391815 ATTAGGGCCA
*
60391825 CCGTT-TTCAGCTCTTATGAGCTTC
1 CCGTTATTCAGCTCGTATGAGCTTC
* * *
60391849 CCATTATTCAGATCTTATGAGCTTC
1 CCGTTATTCAGCTCGTATGAGCTTC
** *
60391874 ATGTTATTCAGCTCGCATGAGCTTC
1 CCGTTATTCAGCTCGTATGAGCTTC
* * *
60391899 CCGTTATTCAGCTCGAAAGAGCTTA
1 CCGTTATTCAGCTCGTATGAGCTTC
* * *
60391924 CTGTT-TACAGCTCATATGAGC
1 CCGTTATTCAGCTCGTATGAGC
60391945 ATACATGTAT
Statistics
Matches: 77, Mismatches: 18, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
24 16 0.21
25 61 0.79
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (25 bp):
CCGTTATTCAGCTCGTATGAGCTTC
Found at i:60393405 original size:3 final size:3
Alignment explanation
Indices: 60393383--60393474 Score: 157
Period size: 3 Copynumber: 30.3 Consensus size: 3
60393373 ATATAATGAG
* *
60393383 AAT AAC AAT GAT ATAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
60393429 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
60393475 GCATAAAATT
Statistics
Matches: 84, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
3 81 0.96
4 3 0.04
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:60400376 original size:24 final size:24
Alignment explanation
Indices: 60400349--60400405 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
60400339 AAACCTAATT
60400349 CTAATCAAA-GCCAAATATATTATG
1 CTAAT-AAATGCCAAATATATTATG
*
60400373 CTAATAAATGCTAAATATATTATG
1 CTAATAAATGCCAAATATATTATG
*
60400397 CTCATAAAT
1 CTAATAAAT
60400406 ACTAAATCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 3 0.10
24 27 0.90
ACGTcount: A:0.46, C:0.14, G:0.07, T:0.33
Consensus pattern (24 bp):
CTAATAAATGCCAAATATATTATG
Found at i:60400410 original size:24 final size:24
Alignment explanation
Indices: 60400361--60400412 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
60400351 AATCAAAGCC
*
60400361 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATACT
*
60400385 AAATATATTATGCTCATAAATACT
1 AAATATATTATGCTAATAAATACT
60400409 AAAT
1 AAAT
60400413 CTTCTAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATACT
Found at i:60404730 original size:24 final size:24
Alignment explanation
Indices: 60404715--60404766 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
60404705 AATCAAAGTC
60404715 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATGCT
* * *
60404739 AAATATATTATACTCATAAATACT
1 AAATATATTATGCTAATAAATGCT
60404763 AAAT
1 AAAT
60404767 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATGCT
Found at i:60406093 original size:13 final size:13
Alignment explanation
Indices: 60406075--60406099 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60406065 GTAACGCATG
60406075 ATTTGGATTCTAT
1 ATTTGGATTCTAT
60406088 ATTTGGATTCTA
1 ATTTGGATTCTA
60406100 ATGAATCATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.16, T:0.52
Consensus pattern (13 bp):
ATTTGGATTCTAT
Found at i:60408709 original size:85 final size:85
Alignment explanation
Indices: 60408620--60408784 Score: 231
Period size: 85 Copynumber: 1.9 Consensus size: 85
60408610 ACTGGGCGTG
* * * *
60408620 CTCTCATTGACATGTTATCAAAAAAGCTTTTCTAGCTGGACGCGCTTTTACACTACTGTGAAGAA
1 CTCTCATTGACATGTCATCAAAAAAGCTCTTCTAGCTGGACACGCTTTCACACTACTGTGAAGAA
60408685 AACGCGTCCAACTGGGCACA
66 AACGCGTCCAACTGGGCACA
* ** * * *
60408705 CTCTCCTTGACATGTCATCAGGAAAGCTCTTCTAGTTTGACATGCTTTCACACTACTGTGAAGAA
1 CTCTCATTGACATGTCATCAAAAAAGCTCTTCTAGCTGGACACGCTTTCACACTACTGTGAAGAA
*
60408770 AACGCGTCCAGCTGG
66 AACGCGTCCAACTGG
60408785 TTGCGCTTTC
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
85 69 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.28
Consensus pattern (85 bp):
CTCTCATTGACATGTCATCAAAAAAGCTCTTCTAGCTGGACACGCTTTCACACTACTGTGAAGAA
AACGCGTCCAACTGGGCACA
Found at i:60411919 original size:28 final size:27
Alignment explanation
Indices: 60411888--60411941 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 27
60411878 ATATTTTCTG
60411888 TATT-TTTTATATATTTTTTTTATAATTC
1 TATTATTTTA-ATA-TTTTTTTATAATTC
60411916 TATTGATTTTAATATTTTTTTATAAT
1 TATT-ATTTTAATATTTTTTTATAAT
60411942 AGATAGTATG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
28 16 0.67
29 3 0.12
30 5 0.21
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.69
Consensus pattern (27 bp):
TATTATTTTAATATTTTTTTATAATTC
Found at i:60416560 original size:21 final size:21
Alignment explanation
Indices: 60416536--60416576 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
60416526 CCTTCTCTGG
* *
60416536 TTTTATTCTTATGTAAAATTA
1 TTTTAGTCTGATGTAAAATTA
*
60416557 TTTTAGTCTGATTTAAAATT
1 TTTTAGTCTGATGTAAAATT
60416577 TACAACAATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.07, T:0.56
Consensus pattern (21 bp):
TTTTAGTCTGATGTAAAATTA
Found at i:60425159 original size:15 final size:16
Alignment explanation
Indices: 60425139--60425175 Score: 58
Period size: 15 Copynumber: 2.3 Consensus size: 16
60425129 AATCGGCAGC
60425139 AAAAAGAAAAA-AGAA
1 AAAAAGAAAAACAGAA
60425154 AAAAAGAAAAACAGAA
1 AAAAAGAAAAACAGAA
60425170 AGAAAA
1 A-AAAA
60425176 TTTGTATTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 11 0.55
16 5 0.25
17 4 0.20
ACGTcount: A:0.84, C:0.03, G:0.14, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAAACAGAA
Found at i:60430830 original size:21 final size:21
Alignment explanation
Indices: 60430800--60430844 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
60430790 TTGCCCATAG
*
60430800 CATGTCACACCTTGAAACCAA
1 CATGTAACACCTTGAAACCAA
60430821 CATGTAACACCTTGAAACCAA
1 CATGTAACACCTTGAAACCAA
60430842 CAT
1 CAT
60430845 ATCACATCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.40, C:0.31, G:0.09, T:0.20
Consensus pattern (21 bp):
CATGTAACACCTTGAAACCAA
Found at i:60433511 original size:3 final size:3
Alignment explanation
Indices: 60433489--60433562 Score: 60
Period size: 3 Copynumber: 24.3 Consensus size: 3
60433479 TAATTTAATG
* * * *
60433489 TAT TAT CAT CTAT CAT TAT TAT TTT TAT TAT TTT TAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
60433535 CT-T TAC TAT TAT TAG TAT TAA TAT TAT T
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT T
60433563 GTTGTTACTT
Statistics
Matches: 54, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
2 1 0.02
3 50 0.93
4 3 0.06
ACGTcount: A:0.30, C:0.07, G:0.01, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:60433760 original size:2 final size:2
Alignment explanation
Indices: 60433753--60433795 Score: 50
Period size: 2 Copynumber: 21.5 Consensus size: 2
60433743 TTTTTATAAG
* * * *
60433753 TA TA TA TA TA TA TA TA TA TA TT TA TA TG TA TG TA TT TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
60433795 T
1 T
60433796 TTTTGTATAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.56
Consensus pattern (2 bp):
TA
Found at i:60438683 original size:23 final size:23
Alignment explanation
Indices: 60438655--60438699 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
60438645 AATATTTATC
60438655 AAATCATAATCATTTAAGATGCA
1 AAATCATAATCATTTAAGATGCA
60438678 AAATCATAATCATTTAAGATGC
1 AAATCATAATCATTTAAGATGC
60438700 TTATATCCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.47, C:0.13, G:0.09, T:0.31
Consensus pattern (23 bp):
AAATCATAATCATTTAAGATGCA
Found at i:60439642 original size:20 final size:20
Alignment explanation
Indices: 60439607--60439644 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
60439597 TGACCACTTC
60439607 GTAATAAAACGATAACATAA
1 GTAATAAAACGATAACATAA
60439627 GTAACTAAAACG-TAACAT
1 GTAA-TAAAACGATAACAT
60439645 TTTAAACATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.55, C:0.13, G:0.11, T:0.21
Consensus pattern (20 bp):
GTAATAAAACGATAACATAA
Found at i:60442319 original size:29 final size:29
Alignment explanation
Indices: 60442265--60442324 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
60442255 GAGTTCAAGT
*
60442265 GTTTGGGGTTTAGGGTTTAAGATTTAAGG
1 GTTTGGGGTTTAGGGTTCAAGATTTAAGG
* *
60442294 GTTTGGGG-TTCGGAGTTCAAGGTTTAAGG
1 GTTTGGGGTTTAGG-GTTCAAGATTTAAGG
60442323 GT
1 GT
60442325 ACAAGATTAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 4 0.15
29 23 0.85
ACGTcount: A:0.18, C:0.03, G:0.40, T:0.38
Consensus pattern (29 bp):
GTTTGGGGTTTAGGGTTCAAGATTTAAGG
Found at i:60445562 original size:23 final size:21
Alignment explanation
Indices: 60445528--60445575 Score: 60
Period size: 23 Copynumber: 2.2 Consensus size: 21
60445518 TGAGTGTATG
60445528 AATTAATTAATTAAAAGATTT
1 AATTAATTAATTAAAAGATTT
**
60445549 AATTAATTTGAATTAAATTATTT
1 AATTAA-TT-AATTAAAAGATTT
60445572 AATT
1 AATT
60445576 TTTTATACTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 6 0.26
22 2 0.09
23 15 0.65
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (21 bp):
AATTAATTAATTAAAAGATTT
Found at i:60447860 original size:271 final size:271
Alignment explanation
Indices: 60447362--60447904 Score: 928
Period size: 271 Copynumber: 2.0 Consensus size: 271
60447352 TGAAGAAAAG
* *
60447362 AGATCCGAAGCCGTTTTAAGAGCAAGTTGTCACGACACTTGAAGCAATCCAAGTCAGATGACCCT
1 AGATCCAAACCCGTTTTAAGAGCAAGTTGTCACGACACTTGAAGCAATCCAAGTCAGATGACCCT
*
60447427 TGGATCAAAGTTAAATCGGAAAGAAGAATCAATTGATATTTTTCTTTGTATTCAAGAAATTTTAA
66 CGGATCAAAGTTAAATCGGAAAGAAGAATCAATTGATATTTTTCTTTGTATTCAAGAAATTTTAA
60447492 GAGATTGTAACTCTCTTTCAAGTTATCAATAAATTTGATGTCGAATTTCCAAGTCAATATTTTAC
131 GAGATTGTAACTCTCTTTCAAGTTATCAATAAATTTGATGTCGAATTTCCAAGTCAATATTTTAC
* * * * * *
60447557 TCGAAATTTGTGTGTACAAATTTCTGGCACACCTAGTAAGACAATCTTTGTCTTTTATCTTTTCT
196 TCAAAATTTGTGTGTACAAATTTCTCGCACACCCAATAAGACAATCTTTATCTTTCATCTTTTCT
60447622 CTTGAAAGTCA
261 CTTGAAAGTCA
*
60447633 AGATCCAAACCCGTTTTAAGAGCAAGTTGTCATGACACTTGAAGCAATCCAAGTCAGATGACCCT
1 AGATCCAAACCCGTTTTAAGAGCAAGTTGTCACGACACTTGAAGCAATCCAAGTCAGATGACCCT
*
60447698 CGGATCAAAGTTAAATC-GAAGAGAATAATCAATTGATATTTTTCTTTGTATTCAAGAAATTTTA
66 CGGATCAAAGTTAAATCGGAA-AGAAGAATCAATTGATATTTTTCTTTGTATTCAAGAAATTTTA
* *
60447762 AGAGATTGTAACTTTCTTTCAAGTTATCAATAAATTTGACT-TTGAATTTCCAAGTCAATATTTT
130 AGAGATTGTAACTCTCTTTCAAGTTATCAATAAATTTGA-TGTCGAATTTCCAAGTCAATATTTT
*
60447826 ACTCAAAATTTGTGTGTACAAATTTCTCGCACACCCAATAGGACAATCTTTATCTTTCATCTTTT
194 ACTCAAAATTTGTGTGTACAAATTTCTCGCACACCCAATAAGACAATCTTTATCTTTCATCTTTT
60447891 CTCTTGAAAGTCA
259 CTCTTGAAAGTCA
60447904 A
1 A
60447905 AATTCAAAGT
Statistics
Matches: 256, Mismatches: 14, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
270 3 0.01
271 252 0.98
272 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35
Consensus pattern (271 bp):
AGATCCAAACCCGTTTTAAGAGCAAGTTGTCACGACACTTGAAGCAATCCAAGTCAGATGACCCT
CGGATCAAAGTTAAATCGGAAAGAAGAATCAATTGATATTTTTCTTTGTATTCAAGAAATTTTAA
GAGATTGTAACTCTCTTTCAAGTTATCAATAAATTTGATGTCGAATTTCCAAGTCAATATTTTAC
TCAAAATTTGTGTGTACAAATTTCTCGCACACCCAATAAGACAATCTTTATCTTTCATCTTTTCT
CTTGAAAGTCA
Found at i:60460601 original size:26 final size:25
Alignment explanation
Indices: 60460565--60460638 Score: 66
Period size: 26 Copynumber: 3.0 Consensus size: 25
60460555 TTAAGATGCT
* *
60460565 TATATATAATTTTTAATAAATTAAAA
1 TATATAAAATTATTAA-AAATTAAAA
*
60460591 TATATAAAATTATTAAATATT-AAA
1 TATATAAAATTATTAAAAATTAAAA
60460615 T-TA-AAATATT-TTAAAAATTCAAAA
1 TATATAAA-ATTATTAAAAATT-AAAA
60460639 AAAATAATAT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
22 11 0.27
23 5 0.12
24 7 0.17
25 4 0.10
26 14 0.34
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (25 bp):
TATATAAAATTATTAAAAATTAAAA
Found at i:60460602 original size:15 final size:13
Alignment explanation
Indices: 60460581--60460624 Score: 52
Period size: 15 Copynumber: 3.1 Consensus size: 13
60460571 TAATTTTTAA
60460581 TAAATTAAAATAT
1 TAAATTAAAATAT
60460594 ATAAAATTATTAAATAT
1 -T-AAATTA--AAATAT
60460611 TAAATTAAAATAT
1 TAAATTAAAATAT
60460624 T
1 T
60460625 TTAAAAATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
13 7 0.26
14 1 0.04
15 12 0.44
16 1 0.04
17 6 0.22
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
TAAATTAAAATAT
Found at i:60462432 original size:16 final size:15
Alignment explanation
Indices: 60462406--60462440 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
60462396 TTACATGTTT
60462406 TGTTCAATTAACTTC
1 TGTTCAATTAACTTC
*
60462421 TGTTCTAATTAACTTT
1 TGTTC-AATTAACTTC
60462437 TGTT
1 TGTT
60462441 TTGTTCAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.23, C:0.14, G:0.09, T:0.54
Consensus pattern (15 bp):
TGTTCAATTAACTTC
Found at i:60462909 original size:23 final size:24
Alignment explanation
Indices: 60462879--60462941 Score: 67
Period size: 23 Copynumber: 2.6 Consensus size: 24
60462869 GTGTGTTTCT
*
60462879 TAATATTTATATTATTT-TTAATC
1 TAATATTTATATTATTTAATAATC
* *
60462902 TAATATTTA-ATAATTTAATAATT
1 TAATATTTATATTATTTAATAATC
60462925 TAATATTATAATATTAT
1 TAATATT-T-ATATTAT
60462942 ATATTATAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
22 6 0.19
23 20 0.62
24 1 0.03
25 1 0.03
26 4 0.12
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (24 bp):
TAATATTTATATTATTTAATAATC
Found at i:60462919 original size:8 final size:8
Alignment explanation
Indices: 60462897--60462929 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
60462887 ATATTATTTT
*
60462897 TAATCTAA
1 TAATTTAA
60462905 T-ATTTAA
1 TAATTTAA
60462912 TAATTTAA
1 TAATTTAA
60462920 TAATTTAA
1 TAATTTAA
60462928 TA
1 TA
60462930 TTATAATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
7 6 0.26
8 17 0.74
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (8 bp):
TAATTTAA
Found at i:60462947 original size:15 final size:13
Alignment explanation
Indices: 60462919--60462957 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 13
60462909 TAATAATTTA
60462919 ATAATTTAATATT
1 ATAATTTAATATT
60462932 ATAATATTATATATT
1 ATAAT-TTA-ATATT
60462947 ATAGATTTAAT
1 ATA-ATTTAAT
60462958 TTGTGTTATA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 5 0.22
14 5 0.22
15 11 0.48
16 2 0.09
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (13 bp):
ATAATTTAATATT
Found at i:60468139 original size:19 final size:20
Alignment explanation
Indices: 60468097--60468140 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
60468087 ATAATAAGTA
* *
60468097 ATATATAATGTATTACTATT
1 ATATATAATCTATTACTATG
*
60468117 ATATATAA-CTATTATTATG
1 ATATATAATCTATTACTATG
60468136 ATATA
1 ATATA
60468141 GATTATAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.48
Consensus pattern (20 bp):
ATATATAATCTATTACTATG
Found at i:60469034 original size:19 final size:19
Alignment explanation
Indices: 60469007--60469046 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
60468997 TGTGATATAG
60469007 TATTATATAATGAATAATA
1 TATTATATAATGAATAATA
* * *
60469026 TATTTTATAATTATTAATA
1 TATTATATAATGAATAATA
60469045 TA
1 TA
60469047 ATAACTACTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (19 bp):
TATTATATAATGAATAATA
Found at i:60472974 original size:39 final size:39
Alignment explanation
Indices: 60472931--60473008 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
60472921 TGTGATGATG
*
60472931 AAGAAAGGGATTGTGTTTGTGATGCCTTCGGTAGGGCAA
1 AAGAAAGGGATTATGTTTGTGATGCCTTCGGTAGGGCAA
60472970 AAGAAAGGGATTATGTTTGTGATGCCTTCGGTAGGGCAA
1 AAGAAAGGGATTATGTTTGTGATGCCTTCGGTAGGGCAA
60473009 CTATATTACA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.27, C:0.10, G:0.35, T:0.28
Consensus pattern (39 bp):
AAGAAAGGGATTATGTTTGTGATGCCTTCGGTAGGGCAA
Found at i:60477946 original size:90 final size:89
Alignment explanation
Indices: 60477753--60477975 Score: 252
Period size: 90 Copynumber: 2.4 Consensus size: 89
60477743 TTAAGGGTGT
* *
60477753 AAAAAGCCCTCAAACTTTTTCAAAAAAAAAAGTAATTAAGCCCCTACTTTTTTTTTTTTGCATTC
1 AAAAAACCCTCAAACTTTTTC---AAAAAAAGTAATTAAGCCCCTAC-TTTTTTTTTTTGCACTC
* * *
60477818 ATTTGGGTACTTGAACTTTCAAAATATT
62 AATTGGGTACTTAAACTTTCAAAATATC
*** * * *
60477846 TTGAAGCCCTCAAACCTTTTCAAAAAAAGCAATTAAGCCCCTAC-TTTTTTTTTT-CACTCAATT
1 AAAAAACCCTCAAACTTTTTCAAAAAAAGTAATTAAGCCCCTACTTTTTTTTTTTGCACTCAATT
60477909 GGGTACTTAAACTTTCAAAATGCATC
66 GGGTACTTAAACTTTCAAAAT--ATC
*
60477935 AAAAATACCCTCAAACTTTTTTCAAAAAAAGTAGTTAAGCC
1 AAAAA-ACCCTCAAAC-TTTTTCAAAAAAAGTAATTAAGCC
60477976 ATGCTTTTAT
Statistics
Matches: 110, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
87 27 0.25
88 10 0.09
89 4 0.04
90 31 0.28
91 21 0.19
93 17 0.15
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (89 bp):
AAAAAACCCTCAAACTTTTTCAAAAAAAGTAATTAAGCCCCTACTTTTTTTTTTTGCACTCAATT
GGGTACTTAAACTTTCAAAATATC
Found at i:60478069 original size:72 final size:71
Alignment explanation
Indices: 60477983--60478133 Score: 191
Period size: 72 Copynumber: 2.1 Consensus size: 71
60477973 GCCATGCTTT
* * * *
60477983 TATTAAAAATTAGAAAAAAATTAAAAT-TAATAAAAGCTATAAATATTATTAAATTATAATA-AA
1 TATTAAAAATTAGAAAAAAATAAAAATATAA-AAAAGATATAAAAATTA-TAAAATAT-ATAGAA
*
60478046 ATATTAAAA
63 ATATAAAAA
*
60478055 TATTAAAAATTAGAAAAAAATAAAAATCATAAAAAATATATAAAAATTATAAAATATATAGAAAT
1 TATTAAAAATTAGAAAAAAATAAAAAT-ATAAAAAAGATATAAAAATTATAAAATATATAGAAAT
60478120 ATAAAAA
65 ATAAAAA
60478127 TA-TAAAA
1 TATTAAAA
60478134 TTTTATAAAG
Statistics
Matches: 70, Mismatches: 6, Indels: 7
0.84 0.07 0.08
Matches are distributed among these distances:
71 8 0.11
72 45 0.64
73 14 0.20
74 3 0.04
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (71 bp):
TATTAAAAATTAGAAAAAAATAAAAATATAAAAAAGATATAAAAATTATAAAATATATAGAAATA
TAAAAA
Found at i:60478099 original size:20 final size:18
Alignment explanation
Indices: 60477986--60478130 Score: 81
Period size: 18 Copynumber: 8.0 Consensus size: 18
60477976 ATGCTTTTAT
60477986 TAAAAATTAGAAAAA-A-A
1 TAAAAATTA-AAAAATATA
* **
60478003 TTAAAATTAATAAAAGCTA
1 TAAAAATTAA-AAAATATA
* * *
60478022 TAAATATTATTAAATTATAA
1 TAAAAATTA-AAAAATAT-A
60478042 TAAAATATT--AAAATAT-
1 TAAAA-ATTAAAAAATATA
60478058 TAAAAATTAGAAAAA-A-A
1 TAAAAATTA-AAAAATATA
60478075 TAAAAATCATAAAAAATATA
1 TAAAAAT--TAAAAAATATA
*
60478095 TAAAAATTATAAAATATA
1 TAAAAATTAAAAAATATA
*
60478113 TAGAAA-TATAAAAATATA
1 TAAAAATTA-AAAAATATA
60478131 AAATTTTATA
Statistics
Matches: 100, Mismatches: 13, Indels: 29
0.70 0.09 0.20
Matches are distributed among these distances:
15 3 0.03
16 6 0.06
17 22 0.22
18 38 0.38
19 15 0.15
20 13 0.13
21 3 0.03
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (18 bp):
TAAAAATTAAAAAATATA
Found at i:60478265 original size:20 final size:19
Alignment explanation
Indices: 60478220--60478265 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
60478210 ACCAAAAGAG
60478220 CATTTTATAATTTTTCTAT
1 CATTTTATAATTTTTCTAT
* *
60478239 AACTTTTATAGATTTTTTTAT
1 CA-TTTTATA-ATTTTTCTAT
60478260 CATTTT
1 CATTTT
60478266 TACCACATGT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
19 1 0.05
20 11 0.50
21 10 0.45
ACGTcount: A:0.26, C:0.09, G:0.02, T:0.63
Consensus pattern (19 bp):
CATTTTATAATTTTTCTAT
Found at i:60478391 original size:28 final size:28
Alignment explanation
Indices: 60478329--60478391 Score: 74
Period size: 27 Copynumber: 2.2 Consensus size: 28
60478319 TAGGGGTTAT
* *
60478329 TAATTTTTTAATGATTTTTAT-AAAATT
1 TAATTTTTTAACGATTTTTATAAAAATC
* *
60478356 TTATTTTTTTACGATTTTTATAAAAAATC
1 TAATTTTTTAACGATTTTTAT-AAAAATC
60478385 TAATTTT
1 TAATTTT
60478392 AATAAGTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
27 18 0.62
29 11 0.38
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (28 bp):
TAATTTTTTAACGATTTTTATAAAAATC
Found at i:60478598 original size:86 final size:87
Alignment explanation
Indices: 60478453--60478646 Score: 254
Period size: 86 Copynumber: 2.2 Consensus size: 87
60478443 TATTTTTTGC
*
60478453 TTTTTTGAAAAATTTTGAGGGTCATTTTAATGCATTTTGAAAGTTCAAGTACCCAATTGAGTG-A
1 TTTTTTGAAAAATTTTGAGGGTCATTTTAATGCATTTTGAAACTTCAAGTACCCAATTGAG-GAA
60478517 AAAAAAAGTAGGGGCTTAATT-AT
65 AAAAAAAG-AGGGGCTTAATTGAT
* * *
60478540 TTTTTTGAAGAAA-TTTGAGGGTC-TTTTGATGTATTTTGAAACTTCAAGTGA-TCAATTGAGGA
1 TTTTTTGAA-AAATTTTGAGGGTCATTTTAATGCATTTTGAAACTTCAAGT-ACCCAATTGAGGA
60478602 AAAAAAAAGAGGGGCTTAATTGAT
64 AAAAAAAAGAGGGGCTTAATTGAT
* *
60478626 TTTTTATTAAAAAGTTTGAGG
1 TTTTT-TGAAAAATTTTGAGG
60478647 ACTTTTATAA
Statistics
Matches: 96, Mismatches: 5, Indels: 12
0.85 0.04 0.11
Matches are distributed among these distances:
85 13 0.14
86 50 0.52
87 30 0.31
88 3 0.03
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.38
Consensus pattern (87 bp):
TTTTTTGAAAAATTTTGAGGGTCATTTTAATGCATTTTGAAACTTCAAGTACCCAATTGAGGAAA
AAAAAAGAGGGGCTTAATTGAT
Found at i:60485410 original size:23 final size:23
Alignment explanation
Indices: 60485375--60485421 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
60485365 TGTTTGTAAG
60485375 TTTGTAAACTTGTAAACTTGTAC
1 TTTGTAAACTTGTAAACTTGTAC
**
60485398 TTTGTAAGTTTGTAAACTTGTAC
1 TTTGTAAACTTGTAAACTTGTAC
60485421 T
1 T
60485422 AACTGCTATG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.11, G:0.15, T:0.47
Consensus pattern (23 bp):
TTTGTAAACTTGTAAACTTGTAC
Found at i:60485813 original size:77 final size:76
Alignment explanation
Indices: 60485666--60485813 Score: 183
Period size: 77 Copynumber: 1.9 Consensus size: 76
60485656 TTCAGCTATA
* * *
60485666 TTTGATGTTATACTTTTTGTGCAAACATTTTCCCTGATTGTTTTGTAAATAAAATGAAAACTTAA
1 TTTGATGTTAGACTTTTTGTGCAAACAATTTCCCTGATTGTTTTGTAAAGAAAATGAAAACTTAA
60485731 ACTCTTCTTAG
66 ACTCTTCTTAG
* * * *
60485742 TTTGATGTTAGATTTTTTGTGCAAACAAAATTT-CCTGGATTG-TTTGTACAGGAAATGAGAACT
1 TTTGATGTTAGACTTTTTGTGCAAAC--AATTTCCCT-GATTGTTTTGTAAAGAAAATGAAAACT
*
60485805 TGAACTCTT
63 TAAACTCTT
60485814 ATTCTTTTCC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
76 24 0.39
77 28 0.46
78 9 0.15
ACGTcount: A:0.30, C:0.12, G:0.16, T:0.43
Consensus pattern (76 bp):
TTTGATGTTAGACTTTTTGTGCAAACAATTTCCCTGATTGTTTTGTAAAGAAAATGAAAACTTAA
ACTCTTCTTAG
Found at i:60489064 original size:18 final size:18
Alignment explanation
Indices: 60489041--60489075 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
60489031 AGCAGCAGCA
*
60489041 GAACCTGTTAAAGAATCT
1 GAACCTGATAAAGAATCT
*
60489059 GAACCTGATGAAGAATC
1 GAACCTGATAAAGAATC
60489076 AGAGCCTTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23
Consensus pattern (18 bp):
GAACCTGATAAAGAATCT
Found at i:60491296 original size:2 final size:2
Alignment explanation
Indices: 60491289--60491317 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
60491279 TTTGGTAATT
60491289 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
60491318 TGGAAGAGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:60493592 original size:10 final size:9
Alignment explanation
Indices: 60493568--60493603 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
60493558 ATTTTTAAAA
60493568 ATAATTTTT
1 ATAATTTTT
60493577 ATAATTTTT
1 ATAATTTTT
*
60493586 TTGAATTTTT
1 AT-AATTTTT
60493596 ATAATTTT
1 ATAATTTT
60493604 AAAAAAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 16 0.67
10 8 0.33
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (9 bp):
ATAATTTTT
Found at i:60493596 original size:32 final size:31
Alignment explanation
Indices: 60493520--60493585 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
60493510 TTGATTAAAT
* *
60493520 ATTTTAAATTTTAAAAAATATATATTTTATA
1 ATTTTTAATTTTTAAAAATATATATTTTATA
60493551 ATTTTTAATTTTTAAAAATA-AT-TTTTATA
1 ATTTTTAATTTTTAAAAATATATATTTTATA
60493580 ATTTTT
1 ATTTTT
60493586 TTGAATTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 13 0.39
30 2 0.06
31 18 0.55
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (31 bp):
ATTTTTAATTTTTAAAAATATATATTTTATA
Found at i:60495417 original size:19 final size:21
Alignment explanation
Indices: 60495390--60495428 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
60495380 TTATATTTAT
60495390 TTAACATTTA-A-AATTAAAA
1 TTAACATTTATATAATTAAAA
*
60495409 TTAATATTTATATAATTAAA
1 TTAACATTTATATAATTAAA
60495429 TGTAAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 1 0.06
21 7 0.41
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (21 bp):
TTAACATTTATATAATTAAAA
Found at i:60500512 original size:2 final size:2
Alignment explanation
Indices: 60500505--60500550 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
60500495 NNNNNNNNAG
60500505 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
60500547 TA TA
1 TA TA
60500551 CTCGTAGACA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:60517765 original size:7 final size:7
Alignment explanation
Indices: 60517753--60517777 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
60517743 AATCGTTTCA
60517753 TATTTAG
1 TATTTAG
60517760 TATTTAG
1 TATTTAG
60517767 TATTTAG
1 TATTTAG
60517774 TATT
1 TATT
60517778 ATGTGTATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:60518386 original size:18 final size:18
Alignment explanation
Indices: 60518363--60518397 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
60518353 CCAGGTGCAT
* *
60518363 ATCCTAGCCCTTATATGC
1 ATCCTAACCATTATATGC
60518381 ATCCTAACCATTATATG
1 ATCCTAACCATTATATG
60518398 TTTCCTTTTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (18 bp):
ATCCTAACCATTATATGC
Found at i:60520553 original size:9 final size:9
Alignment explanation
Indices: 60520539--60520575 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
60520529 TATAGTTTGA
60520539 TATTCGAAT
1 TATTCGAAT
60520548 TATTCGAAT
1 TATTCGAAT
*
60520557 TATTCGAGT
1 TATTCGAAT
60520566 TATTCGAAT
1 TATTCGAAT
60520575 T
1 T
60520576 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:60520646 original size:9 final size:9
Alignment explanation
Indices: 60520629--60520659 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
60520619 TCGAGTTGAT
60520629 TCGAATAAC
1 TCGAATAAC
*
60520638 TCGATTAAC
1 TCGAATAAC
60520647 TCGAATAAC
1 TCGAATAAC
60520656 TCGA
1 TCGA
60520660 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:60523405 original size:124 final size:125
Alignment explanation
Indices: 60523092--60523584 Score: 699
Period size: 126 Copynumber: 3.9 Consensus size: 125
60523082 GGCCAAACAT
* * *
60523092 GAACTACTGTAGAAAAAGGGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAATACATC
1 GAACTACTGTAGAAAAAGAGAGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAATGCATC
* * *
60523157 CTGCTTGAAGCGCTTTTAACACTATTTGTTCAGAAACGTCTTCTCAAAATTACTTTTTCAA
66 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTA-TTTTTTAA
* * * *
60523218 GAACTACTGTAGAAAAATAGCGTCCACGTGGGAGCTTTTTTCA-TAAATTTTGCTGACAGTGCAT
1 GAACTACTGTAGAAAAAGAGAGTCCACGTGGGAGCTTTTTTCAGT-AATTTTGCTGATAATGCAT
60523282 CCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATT-TTTTTTAA
65 CCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTAA
* * * *
60523342 GAACTACTGTAGAAAAAAAGAATCCACGTGGCAGCTTTTTTCATTAATTTTGCTG-TCAATGCAT
1 GAACTACTGTAGAAAAAGAGAGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGAT-AATGCAT
* * *
60523406 CCTGTTTGAAGCGTTTTTGACATTATTTGTTCAG-AACTGTCTTCTCAAAATTATTTTTTCAG
65 CCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAAC-GTCTTCTCAAAATTATTTTTT-AA
* * *
60523468 GAACTACTGTAGAAAAAGAGAGTCCACGTGGGAG-TTCTTTTCAGTAATATTGTTGATAGTGCAT
1 GAACTACTGTAGAAAAAGAGAGTCCACGTGGGAGCTT-TTTTCAGTAATTTTGCTGATAATGCAT
* *
60523532 TCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAACCGTCTTCTCAAAATTA
65 CCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTA
60523585 AAATTTAATT
Statistics
Matches: 330, Mismatches: 28, Indels: 18
0.88 0.07 0.05
Matches are distributed among these distances:
123 3 0.01
124 108 0.33
125 10 0.03
126 206 0.62
127 3 0.01
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (125 bp):
GAACTACTGTAGAAAAAGAGAGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAATGCATC
CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTAA
Done.