Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62769430
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1067035 characters in sequence are not A, C, G, or T
File 20 of 206
Found at i:6079242 original size:652 final size:651
Alignment explanation
Indices: 6077351--6079148 Score: 2550
Period size: 652 Copynumber: 2.8 Consensus size: 651
6077341 TATTCTCAGT
* * *
6077351 CTGCAACCTCAGGGAAATAAGACTTGATGCGATCTATTTTACTGCAACTTCAGAGAGATAGGATC
1 CTGCAACCTCAGGGAAATAAGACTTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATC
* * *
6077416 TATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCCACTCCAC
66 TGTTATTTGAATCCGCTCCATTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCAC
* * *
6077481 TGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTTAGGGGGATAAA
131 TGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAAGGGGATAAG
*
6077546 ACTTACTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAACACCTGATGCAATCTACTCTAC
196 ACTTACTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAACACCTGATGCGATCTACTCTAC
* * * *
6077611 TGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCACGGAGATGGGA
261 TGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTTAGGGAGATGAGA
* * ** * *
6077676 TTACTGGCTTTAATCCACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTC-AGTCTACC
326 TTACTGGCTTTAATCTACCCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGA-TCTGCT
* ** * * * *
6077740 CCACTTCAACTTTAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAAAT
390 CCACTACTGCTTCAAGGGGATAAGACTTGCTTTTTCAGTCTGCTCCGCTGCAACCTCAGGGAGAT
* * * *
6077805 AAGACCTGCTACGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTGTTATTTGAATCTGCTC
455 AAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATC-ATTATTTGAATCTGCTA
* *
6077870 CTCTACAACTTCAGGGAGATGAGATTACTAGCTTTAATCTACTCTACTGCAAACTCAGGGAGATA
519 CACTACAACTTCAGGGAGATGAGATTACTAGCTTTAATCTACTCCACT-CAAACTCAGGGAGATA
* * *
6077935 AGATTTACCATCTTCAGTATGCCCACTTCAACTTTAGGGGGATAAGACTTGCTTTCTCAGTCTGC
583 AGATTCACCATCTTCAGTATGCCCACTTCAACTTCAAGGGGATAAGACTTGCTTTCTCAGTCTGC
6078000 TCCG
648 TCCG
* * * * * *
6078004 CTGCAACCTTAGGGATATAAGACTTGATGCGATCCACTCAACAGCAACTTTAGAGAGATAAGATC
1 CTGCAACCTCAGGGAAATAAGACTTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATC
* *
6078069 TGTTATTCGAATCCGCTCCATTGCAATTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCAC
66 TGTTATTTGAATCCGCTCCATTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCAC
* *
6078134 TGCAAACTTAGGGAGATAAGATTCACCATCTTCAGTATG-CCCACTTCAACTTC-AGGAGGATAA
131 TGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAAGG-GGATAA
* * * * *
6078197 GACTTGCTTTCTCAGTCTGCTCCGCTGCAACCT-AGGAAGATAATACCTGACGCGATCTATTCTA
195 GACTTACTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAACACCTGATGCGATCTACTCTA
* *
6078261 CTGCAACTTCAGAGAGATAAGATCTCTTACTTGAATCCGCTCCACTGCAA-TTTCAGGGAGATGA
260 CTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTT-AGGGAGATGA
* * * * *
6078325 GATTACTGGCTTTAATCTATTCCC-CTACAAACTCAGGAAAGATAAGATTTGCCATATTTGATCT
324 GATTACTGGCTTTAATCTA-CCCCACTGCAAACTCAGG-GAGATAAGATTTGCCATCTTCGATCT
* *
6078389 GCTTCACTACTGCTTCAAGGGTATAAGACTTGCTTTCTT-AGTCTGCTCCGCTGCAACCTCAGGG
387 GCTCCACTACTGCTTCAAGGGGATAAGACTTGCTTT-TTCAGTCTGCTCCGCTGCAACCTCAGGG
* *
6078453 AGATAAGACCTGATGCGATCTACTCTACTGCAACTTTAGAGAGATAGGATCTATTATTTGAATCC
451 AGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATC-ATTATTTGAATCT
** * *
6078518 GCTACACTGTAACTTCAGGAAGATGAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGA
515 GCTACACTACAACTTCAGGGAGATGAGATTACTAGCTTTAATCTACTCCACT-CAAACTCAGGGA
* * * * *
6078583 GATAAGATTCACCATCTTCAGTCTGCCCCCTTTAAGTTCAAGGGGATTAGACTTGCTTTCTCAGT
579 GATAAGATTCACCATCTTCAGTATGCCCACTTCAACTTCAAGGGGATAAGACTTGCTTTCTCAGT
6078648 CTGCTCCG
644 CTGCTCCG
* * * * *
6078656 CTGCAACCACAGGGAGATAATACCTGATGCAATCTACTCTACTGCAACTTCAGAGAGATAAGATC
1 CTGCAACCTCAGGGAAATAAGACTTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATC
* * * *
6078721 TGTTATTTGAATCAGCTTCATTGCAACTTCAGGGCGATGGGATTACTGGCTTTAATCTACCCCAC
66 TGTTATTTGAATCCGCTCCATTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCAC
*
6078786 TGCAAACTCAGAGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAAGGGGATAAG
131 TGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAAGGGGATAAG
* * * *
6078851 ACTTTCTTTTTCAGTCTGCTCCGCTGCAACATCAGGGAGATAAGACCTGATGCGATCTACTCTAC
196 ACTTACTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAACACCTGATGCGATCTACTCTAC
* * * * *
6078916 TGCAATTTCAGAGAGATAAGATCTGTTATTTAAATCCGCTCAATTGCAACTTTAGGGAGAT-AGA
261 TGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTTAGGGAGATGAGA
* *
6078980 TTACTGGCTTTAATCTACCCCACTGCAAACTTAGGGAGATAAGATTTGCCATCTTCGAACTGCTC
326 TTACTGGCTTTAATCTACCCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTC
* * * * * *
6079045 CACAACTGCATCAAGGGGATAAGACTTGCTTTTTCAGACTGCTTCGCTGTAACCTTAGGGAGATA
391 CACTACTGCTTCAAGGGGATAAGACTTGCTTTTTCAGTCTGCTCCGCTGCAACCTCAGGGAGATA
* *
6079110 ACACCTGATGCGATCTACTCTACTGCAACTTCAGGGAGA
456 AGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGA
6079149 CGTGATCACT
Statistics
Matches: 1012, Mismatches: 121, Indels: 25
0.87 0.10 0.02
Matches are distributed among these distances:
650 2 0.00
651 115 0.11
652 574 0.57
653 236 0.23
654 82 0.08
655 3 0.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (651 bp):
CTGCAACCTCAGGGAAATAAGACTTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATC
TGTTATTTGAATCCGCTCCATTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCAC
TGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAAGGGGATAAG
ACTTACTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAACACCTGATGCGATCTACTCTAC
TGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTTAGGGAGATGAGA
TTACTGGCTTTAATCTACCCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTC
CACTACTGCTTCAAGGGGATAAGACTTGCTTTTTCAGTCTGCTCCGCTGCAACCTCAGGGAGATA
AGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCATTATTTGAATCTGCTACA
CTACAACTTCAGGGAGATGAGATTACTAGCTTTAATCTACTCCACTCAAACTCAGGGAGATAAGA
TTCACCATCTTCAGTATGCCCACTTCAACTTCAAGGGGATAAGACTTGCTTTCTCAGTCTGCTCC
G
Found at i:6079519 original size:825 final size:826
Alignment explanation
Indices: 6078304--6079973 Score: 2421
Period size: 825 Copynumber: 2.0 Consensus size: 826
6078294 AATCCGCTCC
* * * *
6078304 ACTGCAATTTCAGGGAGATGAGATTACTGGCTTTAATCTATTCCCCTACAAACTCAGGAAAGATA
1 ACTGCAACTTCAGGGAGACGAGATCACTGGCTTTAATCTATTCCACTACAAACTCAGGAAAGATA
* * *
6078369 AGATTTGCCATATTTGATCTGCTTCACTACTGCTTCAAGGGTATAAGACTTGCTTTCTTAGTCTG
66 AGATTTGCCATATTTGATCTGCTCCACTACTGCTT-AAGGGGATAAGACTGGCTTTCTTAGTCTG
* * * *
6078434 CTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTTAGAGAGATA
130 CTCCGCTGCAACCTCAAGGAGATAACACCTAATGCGATCTACTCTACTGCAACTTCAGAGAGATA
* ** *
6078499 GGATCTATTATTTGAATCCGCTACACTGTAACTTCAGGAAGATGAGATTACTGGCTTTAATCTAC
195 AGATCTATTATTTGAATCCGCTACACTACAACTTCAGGAAGATGAGATTACTAGCTTTAATCTAC
* * *
6078564 TCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCCTTTAAGTTCAAGGGGA
260 TCCACTGCAAACTCAGGGAGATAAGATTCACAATCTTCAGTCTACCCCCTTTAACTTCAAGGGGA
* *
6078629 TTAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCACAGGGAGATAATACCTGATGCAATCTACT
325 TAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCACAGGGAGATAAGACCTGATGCAATCTACT
* * * *
6078694 CTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCAGCT-TCATTGCAACTTCAGGGCGA
390 CTACTACAACTTCAGAGAGATAAGATCTATTATTTGAATCAGCTCT-ATTACAACTTCAGGGAGA
6078758 TGGGATTACTGGCTTTAATCTACCCCACTGCAAACTCA-GAGAGATAAGATTCACCATCTTCAGT
454 TGGGATTACTGGCTTTAATCTACCCCACTGCAAACTCAGGA-AGATAAGATTCACCATCTTCAGT
* * *
6078822 CTGCCCCACTTCAACTTCAAGGGGATAAGACTTTCTTTTTCAGTCTGCTCC-GCTGCAACATCAG
518 CTGCCCCACTTCAACTTCAAGGGGATAAGACTTGCTTTCTCAGCCTGC-CCTGCTGCAACATCAG
* * *
6078886 GGAGATAAGACCTGATGCGATCTACTCTACTGCAATTTCAGAGAGATAAGATCTGTTATTTAAAT
582 GGAGATAAGAACTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTCAAAT
* * *
6078951 CCGCTCAATTGCAACTTTAGGGAGAT-AGATTACTGGCTTTAATCTACCCCACTGCAAACTTAGG
647 CCGCTCAATTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACCCCACTGCAAACTCAAG
** * *
6079015 GAGATAAGATTTGCCATCTTC-GAACTGCTCCACAACTGCATCAAGGGGATAAGACTTGCTTTTT
712 GAGATAAGATTCACCACCTTCAG-ACTGC-CCACAACTGCATCAAGGGGATAAGACTTGCTTTCT
*
6079079 CAGACTGCTTCGCTGTAACCTTAGGGAGATAACACCTGATGCGATCTACTCT
775 CAGACTGCTCCGCTGTAACCTTAGGGAGATAACACCTGATGCGATCTACTCT
* * * *
6079131 ACTGCAACTTCAGGGAGACGTGATCACTTGCTTTAATTTACTT-CACTACAAACTCAGG-GAGAT
1 ACTGCAACTTCAGGGAGACGAGATCACTGGCTTTAATCTA-TTCCACTACAAACTCAGGAAAGAT
* * *
6079194 AAGATTTGCCATCTTTGATCTGCTCCACTATTGCTT-AGGGAGATAAGA-TCGGC-TTCTTCTGT
65 AAGATTTGCCATATTTGATCTGCTCCACTACTGCTTAAGGG-GATAAGACT-GGCTTTCTT-AGT
* *
6079256 CTGCTCCGCTGCAACCTCAAGGAGATAACACTTAATGCGATCTACTCTACTGTAACTTCAGAGAG
127 CTGCTCCGCTGCAACCTCAAGGAGATAACACCTAATGCGATCTACTCTACTGCAACTTCAGAGAG
* * * *
6079321 ATAAGATCTGTTATTTGAATCCGCTCCACTACAATTTCAGGGAA-AT-TGATTACTAGCTTTAAT
192 ATAAGATCTATTATTTGAATCCGCTACACTACAACTTCA-GGAAGATGAGATTACTAGCTTTAAT
* *
6079384 CTACTCCACTGCAAACTCAGGGAGATAAGATTCATAATCTTCAGTCTACCCCACTTTAACTT-TA
256 CTACTCCACTGCAAACTCAGGGAGATAAGATTCACAATCTTCAGTCTACCCC-CTTTAACTTCAA
* * * ** * * *
6079448 GTGGGATAAGACTTGCTTTCTTAGTCTTCTCTGCTGCAACCTTAGGGATATAAGACTTGATGCGA
320 G-GGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCACAGGGAGATAAGACCTGATGCAA
* *
6079513 TCTACTCTATTACAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCTCTATTACAACTTCAG
384 TCTACTCTACTACAACTTCAGAGAGATAAGATCTATTATTTGAATCAGCTCTATTACAACTTCAG
* *
6079578 GGAGATGGGATTACTGGCTTTAATCTACTCTACTGCAAACTCAGGAAGATAAGATTCACCATCTT
449 GGAGATGGGATTACTGGCTTTAATCTACCCCACTGCAAACTCAGGAAGATAAGATTCACCATCTT
* *
6079643 CAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGCCTGCCCTGCTGCAACCT
514 CAGTCTGCCCCACTTCAACTTCAAGGGGATAAGACTTGCTTTCTCAGCCTGCCCTGCTGCAACAT
*
6079708 CAGGGAGATAAGAACTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTCG
579 CAGGGAGATAAGAACTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTCA
* * *
6079773 AATCTGCTCCATTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGCAAACTC
644 AATCCGCTCAATTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACCCCACTGCAAACTC
* * *
6079838 AAGGAGATAAGATTCACCACCTTCAGTCTGCCCACTACTGCTTCAAGGGGATAAGACTTGCTTTC
709 AAGGAGATAAGATTCACCACCTTCAGACTGCCCACAACTGCATCAAGGGGATAAGACTTGCTTTC
** * *
6079903 TCATTCTGCTCCGCTGTAACCTTAGGGAGATAAGACCTGATGCGATTTACTCT
774 TCAGACTGCTCCGCTGTAACCTTAGGGAGATAACACCTGATGCGATCTACTCT
*
6079956 ACTGCAACTTCAGAGAGA
1 ACTGCAACTTCAGGGAGA
6079974 TAGGATCTAT
Statistics
Matches: 752, Mismatches: 79, Indels: 26
0.88 0.09 0.03
Matches are distributed among these distances:
824 78 0.10
825 522 0.69
826 101 0.13
827 49 0.07
828 2 0.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (826 bp):
ACTGCAACTTCAGGGAGACGAGATCACTGGCTTTAATCTATTCCACTACAAACTCAGGAAAGATA
AGATTTGCCATATTTGATCTGCTCCACTACTGCTTAAGGGGATAAGACTGGCTTTCTTAGTCTGC
TCCGCTGCAACCTCAAGGAGATAACACCTAATGCGATCTACTCTACTGCAACTTCAGAGAGATAA
GATCTATTATTTGAATCCGCTACACTACAACTTCAGGAAGATGAGATTACTAGCTTTAATCTACT
CCACTGCAAACTCAGGGAGATAAGATTCACAATCTTCAGTCTACCCCCTTTAACTTCAAGGGGAT
AAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCACAGGGAGATAAGACCTGATGCAATCTACTC
TACTACAACTTCAGAGAGATAAGATCTATTATTTGAATCAGCTCTATTACAACTTCAGGGAGATG
GGATTACTGGCTTTAATCTACCCCACTGCAAACTCAGGAAGATAAGATTCACCATCTTCAGTCTG
CCCCACTTCAACTTCAAGGGGATAAGACTTGCTTTCTCAGCCTGCCCTGCTGCAACATCAGGGAG
ATAAGAACTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTCAAATCCGC
TCAATTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACCCCACTGCAAACTCAAGGAGA
TAAGATTCACCACCTTCAGACTGCCCACAACTGCATCAAGGGGATAAGACTTGCTTTCTCAGACT
GCTCCGCTGTAACCTTAGGGAGATAACACCTGATGCGATCTACTCT
Found at i:6079675 original size:218 final size:218
Alignment explanation
Indices: 6079131--6081362 Score: 2869
Period size: 218 Copynumber: 10.3 Consensus size: 218
6079121 GATCTACTCT
* * * * * * *
6079131 ACTGCAACTTCAGGGAGACGTGATCACTTGCTTTAATTTACTTCACTACAAACTCAGGGAGATAA
1 ACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAA
** * * ** * * *
6079196 GATTTGCCATCTT-TGATCTGCTCCACTAT-TGCTT-AGGGAGATAAGA-TCGGC-TTCTTCTGT
66 GATTCACCATCTTCAG-TCTGCCCCACT-TCAACTTCAGGGGGATAAGACT-TGCTTTC-TCAGT
* * * * *
6079256 CTGCTCCGCTGCAACCTCAAGGAGATAACACTTAATGCGATCTACTCTACTGTAACTTCAGAGAG
127 CTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAG
*
6079321 ATAAGATCTGTTATTTGAATCCGCTCC
192 ATAAGATCTATTATTTGAATCCGCTCC
* * * * *
6079348 ACTACAATTTCAGGGAAAT-TGATTACTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAA
1 ACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAA
** * * * * * *
6079412 GATTCATAATCTTCAGTCTACCCCACTTTAACTTTAGTGGGATAAGACTTGCTTTCTTAGTCTTC
66 GATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGC
* * * * * *
6079477 TCTGCTGCAACCTTAGGGATATAAGACTTGATGCGATCTACTCTATTACAACTTCAGAGAGATAA
131 TCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAA
*
6079542 GATCTATTATTTGAATCCGCTCT
196 GATCTATTATTTGAATCCGCTCC
* * * *
6079565 ATTACAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCTACTGCAAACTCAGGAAGATAA
1 ACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAA
*
6079630 GATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGCCTGC
66 GATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGC
*
6079695 -CCTGCTGCAACCTCAGGGAGATAAGAACTGATGCGATCTACTCTACTGCAACTTCAGAGAGATA
131 TCC-GCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATA
* * *
6079759 AGATCTGTTATTCGAATCTGCTCC
195 AGATCTATTATTTGAATCCGCTCC
* * *
6079783 ATTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAAGGAGATAA
1 ACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAA
* * ** * *
6079848 GATTCACCACCTTCAGTCTG-CCCACTACTGCTTCAAGGGGATAAGACTTGCTTTCTCATTCTGC
66 GATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGC
* * * *
6079912 TCCGCTGTAACCTTAGGGAGATAAGACCTGATGCGATTTACTCTACTGCAACTTCAGAGAGATAG
131 TCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAA
6079977 GATCTATTATTTGAATCCGCTCC
196 GATCTATTATTTGAATCCGCTCC
* * *
6080000 ACTGCAACTTCAGGGAGATGTGATTACTCGTTTTAATCTACTCCACTGCAAACTCAGGGAGATAA
1 ACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAA
** * * * * * *
6080065 GATTTGCCATCTTC-GATCTACTCCACTACTACTT-AGGGAGATAAGA-TATG-TTTCTTCGGTC
66 GATTCACCATCTTCAG-TCTGCCCCACTTCAACTTCAGGGGGATAAGACT-TGCTTTC-TCAGTC
* * * * * *
6080126 TGCTCTGCTGCAACATTAGGGAGATAAGACGTGATGCGATATACTCTACTGCAACTTTAGAGAGA
128 TGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGA
* *
6080191 TAAGATCTGTTATTTGAATCTGCTCC
193 TAAGATCTATTATTTGAATCCGCTCC
* * * ** **
6080217 TCTACAACTTCAAGGAGATCAGATTACTAACTTTAATCTACTCCACTGCAAACTCAGGGAGATAA
1 ACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAA
* * *
6080282 GATTCACC-TAATTCAGCCTGCCCCATTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTG
66 GATTCACCAT-CTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTG
* * * * *
6080346 CTCCGCTGCAACCTTAGGGATATAAGACTTGATGTGATCTACCCTACTGCAACTTCAGAGAGATA
130 CTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATA
* * *
6080411 AGATCTGTTATTCGAATCCGCTCT
195 AGATCTATTATTTGAATCCGCTCC
* * *
6080435 ATTGCAACTTCAGGGACATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGTGAGATAA
1 ACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAA
*
6080500 AATTCACCATCTTCAGTCTG-CCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGC
66 GATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGC
* *
6080564 TCCGCTGCAACCTCAGGGAGATAAGACCTGATGCAATCTACTCTACTG-ACACTTGAGAGAGATA
131 TCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCA-ACTTCAGAGAGATA
* *
6080628 GGATCTATTATTTGGATCCGCTCC
195 AGATCTATTATTTGAATCCGCTCC
* *
6080652 ACTGCAACTTTAGGGAGGTGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAA
1 ACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAA
* * *
6080717 GATTCACCATCTTCAGTCTGCCCTACTTCAACTTTAGGGGGGATTTAGACTTGCTTTCTCAGTCT
66 GATTCACCATCTTCAGTCTGCCCCACTTCAACTTCA-GGGGGA-TAAGACTTGCTTTCTCAGTCT
* * * *
6080782 GCTCCGCTGCAACCACATGGAGATAATACCTGATGCGATCTACTTTACTGCAACTTCAGAGAGAT
129 GCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGAT
* **
6080847 AAGATCTGTTATTTGAATAAGCTCC
194 AAGATCTATTATTTGAATCCGCTCC
* * *
6080872 ATTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACCCCACTGCAAACTCAAGGAGATAA
1 ACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAA
* **
6080937 GATTCACCATCTAT-AGTCTGCCTCACTTCAACTTCAAAGGGATAAGACTTGCTTTCTCAGTCTG
66 GATTCACCATCT-TCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTG
* * * *
6081001 CTCCGCTGCAACCTCAGGGAAATAAGACCTGCTACGATCTACTCTATTGCAACTTCAGAGAGATA
130 CTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATA
* *
6081066 TGATCTATTATTTGAATCCACTCC
195 AGATCTATTATTTGAATCCGCTCC
* * * * * *
6081090 ACTGGAACTTTAGGGAGATGGGATTACTAGTTTTAATCTACTCCACTACAAACTCAGGGAAATAA
1 ACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAA
* * *
6081155 GATTCACCATCTTCAG-CATGCCCCACTTCAACTTTAGGGGGATAAGACTTGATTTTTCAGTCTG
66 GATTCACCATCTTCAGTC-TGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTG
* *
6081219 CTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCTGAGAGATA
130 CTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATA
* *
6081284 GGATCTATTATTTGAATCTGCTCC
195 AGATCTATTATTTGAATCCGCTCC
* * * *
6081308 ACTGCAACTTCAAGGAGATGGGATTACTGGCTTCAATCTACTCCATTACAAACTC
1 ACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTC
6081363 TGGGNNNNNN
Statistics
Matches: 1752, Mismatches: 237, Indels: 51
0.86 0.12 0.03
Matches are distributed among these distances:
215 1 0.00
216 69 0.04
217 691 0.39
218 785 0.45
219 16 0.01
220 188 0.11
221 2 0.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (218 bp):
ACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAA
GATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGC
TCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAA
GATCTATTATTTGAATCCGCTCC
Found at i:6080305 original size:652 final size:649
Alignment explanation
Indices: 6079133--6081362 Score: 2887
Period size: 652 Copynumber: 3.4 Consensus size: 649
6079123 TCTACTCTAC
* * * * * * *
6079133 TGCAACTTCAGGGAGACGTGATCACTTGCTTTAATTTACTTCACTACAAACTCAGGGAGATAAGA
1 TGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTACAAACTCAAGGAGATAAGA
** * *** * *
6079198 TTTGCCATCTT-TGATCTGCTCCACTATTGCTT--AGGGAGATAAGA-TCGGC-TTCTTCTGTCT
66 TTCACCATCTTCAG-TCTGC-CCACTACAACTTCAAGGG-GATAAGACT-TGCTTTC-TCAGTCT
* * * *
6079258 GCTCCGCTGCAACCTCAAGGAGATAACACTTAATGCGATCTACTCTACTGTAACTTCAGAGAGAT
126 GCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGAT
* * * * * * *
6079323 AAGATCTGTTATTTGAATCCGCTCCACTACAATTTCAGGGAAAT-TGATTACTAGCTTTAATCTA
191 AGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTA
** *
6079387 CTCCACTGCAAACTCAGGGAGATAAGATTCATAATCTTCAGTCTACCCCACTTTAACTTTAGTGG
256 CTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTA-CCCACTCT-ACTTTAG-GG
* * * *
6079452 GATAAGACTTGCTTTCTT-AGTCTTCTCTGCTGCAACCTTAGGGATATAAGACTTGATGCGATCT
318 GATAAGACTTGCTTTCTTCAGTCTGCTCTGCTGCAACATTAGGGAGATAAGACCTGATGCGATCT
* * * * *
6079516 ACTCTATTACAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCTCTATTACAACTTCAGGGA
383 ACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCAGCTC-CTTACAACTTCAGGGA
* * *
6079581 GATGGGATTACTGGCTTTAATCTACTCTACTGCAAACTCAGGAAGATAAGATTCACCATCTTCAG
447 GATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCA-ATTCAG
*
6079646 TCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGCCTGC-CCTGCTGCAACCTCA
511 TCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCC-GCTGCAACCTCA
*
6079710 GGGAGATAAGAACTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTCGAA
575 GGGAAATAAGAACTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTCGAA
*
6079775 TCTGCTCCAT
640 TCCGCTCCAT
* *
6079785 TGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAAGGAGATAAGA
1 TGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTACAAACTCAAGGAGATAAGA
* ** *
6079850 TTCACCACCTTCAGTCTGCCCACTACTGCTTCAAGGGGATAAGACTTGCTTTCTCATTCTGCTCC
66 TTCACCATCTTCAGTCTGCCCACTACAACTTCAAGGGGATAAGACTTGCTTTCTCAGTCTGCTCC
* * * *
6079915 GCTGTAACCTTAGGGAGATAAGACCTGATGCGATTTACTCTACTGCAACTTCAGAGAGATAGGAT
131 GCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAGGAT
* * *
6079980 CTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGTGATTACTCGTTTTAATCTACTCCA
196 CTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCA
**
6080045 CTGCAAACTCAGGGAGATAAGATTTGCCATCTTC-GATCTACTCCACTACTAC-TTAGGGAGATA
261 CTGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTAC-CCACT-CTACTTTAGGG-GATA
* * *
6080108 AGA-TATG-TTTCTTCGGTCTGCTCTGCTGCAACATTAGGGAGATAAGACGTGATGCGATATACT
322 AGACT-TGCTTTCTTCAGTCTGCTCTGCTGCAACATTAGGGAGATAAGACCTGATGCGATCTACT
* * *
6080171 CTACTGCAACTTTAGAGAGATAAGATCTGTTATTTGAATCTGCTCCTCTACAACTTCAAGGAGAT
386 CTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCAGCTCCT-TACAACTTCAGGGAGAT
** ** *
6080236 CAGATTACTAACTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCTAATTCAGCCT
450 GGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACC-AATTCAGTCT
* *
6080301 GCCCCATTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTTAGGGA
514 GCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGA
* * *
6080366 TATAAG-ACTTGATGTGATCTACCCTACTGCAACTTCAGAGAGATAAGATCTGTTATTCGAATCC
579 AATAAGAAC-TGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTCGAATCC
*
6080430 GCTCTAT
643 GCTCCAT
* * *
6080437 TGCAACTTCAGGGACATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTC-AGTGAGATAAA
1 TGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTACAAACTCAAG-GAGATAAG
* *
6080501 ATTCACCATCTTCAGTCTGCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTC
65 ATTCACCATCTTCAGTCTGCCCACTACAACTTCAAGGGGATAAGACTTGCTTTCTCAGTCTGCTC
* *
6080566 CGCTGCAACCTCAGGGAGATAAGACCTGATGCAATCTACTCTACTG-ACACTTGAGAGAGATAGG
130 CGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTA-ACTTCAGAGAGATAGG
* * *
6080630 ATCTATTATTTGGATCCGCTCCACTGCAACTTTAGGGAGGTGGGATTACTGGCTTTAATCTACTC
194 ATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTC
* *
6080695 CACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCTACTTCAACTTTAGGGGGGA
259 CACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTACCC-AC-TCTACTTTA--GGGGA
* * * * *
6080760 TTTAGACTTGCTTTC-TCAGTCTGCTCCGCTGCAACCA-CATGGAGATAATACCTGATGCGATCT
320 -TAAGACTTGCTTTCTTCAGTCTGCTCTGCTGCAA-CATTAGGGAGATAAGACCTGATGCGATCT
* * *
6080823 ACTTTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATAAGCTCCATTGCAACTTCAGGGA
383 ACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCAGCTCC-TTACAACTTCAGGGA
* * *
6080888 GATGGGATTACTGGCTTTAATCTACCCCACTGCAAACTCAAGGAGATAAGATTCACC-ATCTATA
447 GATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCAAT-T-CA
* **
6080952 GTCTGCCTCACTTCAACTTCAAAGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCA
510 GTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCA
* * * * * * *
6081017 GGGAAATAAGACCTGCTACGATCTACTCTATTGCAACTTCAGAGAGATATGATCTATTATTTGAA
575 GGGAAATAAGAACTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTCGAA
* *
6081082 TCCACTCCAC
640 TCCGCTCCAT
* * * * * *
6081092 TGGAACTTTAGGGAGATGGGATTACTAGTTTTAATCTACTCCACTACAAACTCAGGGAAATAAGA
1 TGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTACAAACTCAAGGAGATAAGA
* * * * *
6081157 TTCACCATCTTCAG-CATGCCCCACTTCAACTTTAGGGGGATAAGACTTGATTTTTCAGTCTGCT
66 TTCACCATCTTCAGTC-TG-CCCACTACAACTTCAAGGGGATAAGACTTGCTTTCTCAGTCTGCT
*
6081221 CCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCTGAGAGATAGG
129 CCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAGG
* * *
6081286 ATCTATTATTTGAATCTGCTCCACTGCAACTTCAAGGAGATGGGATTACTGGCTTCAATCTACTC
194 ATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTC
* *
6081351 CATTACAAACTC
259 CACTGCAAACTC
6081363 TGGGNNNNNN
Statistics
Matches: 1390, Mismatches: 152, Indels: 68
0.86 0.09 0.04
Matches are distributed among these distances:
651 28 0.02
652 747 0.54
653 83 0.06
654 5 0.00
655 345 0.25
656 181 0.13
657 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.30
Consensus pattern (649 bp):
TGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTACAAACTCAAGGAGATAAGA
TTCACCATCTTCAGTCTGCCCACTACAACTTCAAGGGGATAAGACTTGCTTTCTCAGTCTGCTCC
GCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAGGAT
CTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCA
CTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTACCCACTCTACTTTAGGGGATAAGAC
TTGCTTTCTTCAGTCTGCTCTGCTGCAACATTAGGGAGATAAGACCTGATGCGATCTACTCTACT
GCAACTTCAGAGAGATAAGATCTGTTATTTGAATCAGCTCCTTACAACTTCAGGGAGATGGGATT
ACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCAATTCAGTCTGCCCCAC
TTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAAATAAGA
ACTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTCGAATCCGCTCCAT
Found at i:6084256 original size:217 final size:218
Alignment explanation
Indices: 6083814--6084423 Score: 789
Period size: 217 Copynumber: 2.8 Consensus size: 218
6083804 NNNNNNNNNN
* * ** *
6083814 CTCAAGGAGATAAGATTCGCCCCCTTCAGTCTG-CCCACTTCAACCTCAGGGGGATAAGACTTGC
1 CTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGC
* * * * *
6083878 TTTCTCAATCTGCTCCGCTACAAGCTCAGGGAGATAAGACCTGATACGATCTACTCTACTG-ACA
66 TTTCTCAGTCTGTTCCGCTACAAACTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCA-A
* ** *
6083942 CTTAAGAGAGATAAGATCTGTTATTTGAATTCACTCCACTGTAACTTTAGGGAGATGGGATTACT
130 CTTAAGAGAGATAAGATCTGTTATTTGAATTCGCTCCACTACAACTTCAGGGAGATGGGATTACT
* *
6084007 GGCTTTAATCTACTCCACTGTAAA
195 AGCTTTAATCTACTCCACTGCAAA
* *
6084031 CTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCATTTCAACTTCAGGGGGATAAGACTTCC
1 CTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTT-G
*
6084096 CTTT-TCAGTCTGTTCCGCTATAAACTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAA
65 CTTTCTCAGTCTGTTCCGCTACAAACTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAA
* ** * * *
6084160 CTTTAGACTGATAAGATCTGTTATTTGAATCCGCTCTACTACAACTTCAGGGAGAT-TGATTACT
130 CTTAAGAGAGATAAGATCTGTTATTTGAATTCGCTCCACTACAACTTCAGGGAGATGGGATTACT
6084224 AGCTTTAATCTACTCCACTGCAAA
195 AGCTTTAATCTACTCCACTGCAAA
* * * *
6084248 CTCAGGGAGATAAGATTCACAATCTTCAGTCTACCCCACTTCAACTTTAGTGGGATAAGACTTGC
1 CTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGC
* * * * * * *
6084313 TTTCTTAGTCT-TCTCTGCTGCAACCTTAGAGATATAAGACTTGATGCGATCTACTCTACTGCAA
66 TTTCTCAGTCTGT-TCCGCTACAAACTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAA
* * * * *
6084377 ATTCAGAGAGATAAGATATTTTATTTGAATTCGCTCCATTACAACTT
130 CTTAAGAGAGATAAGATCTGTTATTTGAATTCGCTCCACTACAACTT
6084424 NNNNNNNNNN
Statistics
Matches: 340, Mismatches: 48, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
216 5 0.01
217 204 0.60
218 126 0.37
219 5 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (218 bp):
CTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGC
TTTCTCAGTCTGTTCCGCTACAAACTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
TTAAGAGAGATAAGATCTGTTATTTGAATTCGCTCCACTACAACTTCAGGGAGATGGGATTACTA
GCTTTAATCTACTCCACTGCAAA
Found at i:6085158 original size:218 final size:218
Alignment explanation
Indices: 6084524--6085597 Score: 1499
Period size: 218 Copynumber: 4.9 Consensus size: 218
6084514 NNNNNNNNNN
* * * *
6084524 AGATGTGATTACTGGCATTAATCTACACCACTGCAGACTCAGGAAGATAAGATTCACCATCTTCA
1 AGATGAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGAAGATAAGATTCACCATCTTCA
* *
6084589 GTCTGCTCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCCCCGCTGCAACCTCA
66 GTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCA
*
6084654 GGGAGATAAGACCTGATGTGATCTACCCTACTGCAACTTCAGAGAGATAAGATCTATTATTCGAA
131 GGGAGATAAGACCTGATGCGATCTACCCTACTGCAACTTCAGAGAGATAAGATCTATTATTCGAA
*
6084719 TCCGCTCCATTGCAACTTCAGAG
196 TCCGCTCCACTGCAACTTCAGAG
* ** *
6084742 AGATGAGATTACTAGCTTTAATCTACTCCACTGCAAACTCAGGGGGATAAGATTCACCACCTTCA
1 AGATGAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGAAGATAAGATTCACCATCTTCA
6084807 GTCTG-CCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCA
66 GTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCA
* ** * * * * *
6084871 GGGAGATAAGACCTGATGCGATATATTCTAC-GGACACTTAAGAGAGATAGGATATATTATTTGA
131 GGGAGATAAGACCTGATGCGATCTACCCTACTGCA-ACTTCAGAGAGATAAGATCTATTATTCGA
* *
6084935 ATCCGCTCCACTGCAACTTTAGGG
195 ATCCGCTCCACTGCAACTTCAGAG
6084959 AGATGAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGAAGATAAGATTCACCATCTTCA
1 AGATGAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGAAGATAAGATTCACCATCTTCA
* * * *
6085024 GTCTGCCCCACTTCAACTTTAGGGGGATAAGACTT-CATTTCTCAGTCTGCTCCGCTGTAAACTT
66 GTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGC-TTTCTCAGTCTGCTCCGCTGCAACCTC
* * * * *
6085088 AGGGAGATAATACCTGATGCAATCTACCCTACTGCAAATTCAGAGAGATAAGATCTTTTATTTGA
130 AGGGAGATAAGACCTGATGCGATCTACCCTACTGCAACTTCAGAGAGATAAGATCTATTATTCGA
* * *
6085153 ATCCGCTCCATTACAACTTTAGAG
195 ATCCGCTCCACTGCAACTTCAGAG
* * *
6085177 AGATGGGATTACTGGCATTAATCTACTCCATTGCAAACTCAGGAAGATAAGATTCACCATCTTCA
1 AGATGAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGAAGATAAGATTCACCATCTTCA
* * * *
6085242 GTTTGCCCCAATTCAACTTTAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGTTGCAACCTCA
66 GTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCA
*
6085307 GGGAGATAAGACCTGATGCGATCTAGCCTACTGCAACTTCAGAGAGATAAGATCTATTATTCGAA
131 GGGAGATAAGACCTGATGCGATCTACCCTACTGCAACTTCAGAGAGATAAGATCTATTATTCGAA
* *
6085372 TCCGCTCCACTCCAACTTCAGGG
196 TCCGCTCCACTGCAACTTCAGAG
* * * ** *
6085395 AGATGAGATTACTGGCTTTAATCTACTCCACTGTAAACTTAGGGAGATAAGATTTGCCATCTTTA
1 AGATGAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGAAGATAAGATTCACCATCTTCA
* * * * *
6085460 GTATG-ACCACTTCAACTTCAGGGGGATTAGACTTGCTTTCTTAGTCTGCTCCGCTGCAACCTTA
66 GTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCA
* * * * * ** * * * *
6085524 GGGATATAAGACTTGATGCAATCCACTCTACAACAACTTTAGAGAGATAAGATCTGTTATCCAAA
131 GGGAGATAAGACCTGATGCGATCTACCCTACTGCAACTTCAGAGAGATAAGATCTATTATTCGAA
*
6085589 TTCGCTCCA
196 TCCGCTCCA
6085598 TTACTACTTC
Statistics
Matches: 758, Mismatches: 93, Indels: 11
0.88 0.11 0.01
Matches are distributed among these distances:
216 2 0.00
217 310 0.41
218 443 0.58
219 3 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (218 bp):
AGATGAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGAAGATAAGATTCACCATCTTCA
GTCTGCCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCA
GGGAGATAAGACCTGATGCGATCTACCCTACTGCAACTTCAGAGAGATAAGATCTATTATTCGAA
TCCGCTCCACTGCAACTTCAGAG
Found at i:6085472 original size:435 final size:435
Alignment explanation
Indices: 6084524--6085609 Score: 1575
Period size: 435 Copynumber: 2.5 Consensus size: 435
6084514 NNNNNNNNNN
* * * *
6084524 AGATGTGATTACTGGCATTAATCTACACCACTGCAGACTCAGGAAGATAAGATTCACCATCTTCA
1 AGATGAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGAAGATAAGATTCACCATCTTCA
* * *
6084589 GTCTGCTCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCCCCGCTGCAACCTCA
66 GTCTGCACCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTTA
**
6084654 GGGAGATAAGACCTGATGTGATCTACCCTACTGCAACTTCAGAGAGATAAGATCTATTATTCGAA
131 GGGAGATAAGACCTGATGCAATCTACCCTACTGCAACTTCAGAGAGATAAGATCTATTATTCGAA
* *
6084719 TCCGCTCCATTGCAACTTCAGAGAGATGAGATTACTAGCTTTAATCTACTCCACTGCAAACTCAG
196 TCCGCTCCATTACAACTTCAGAGAGATGAGATTACTAGCATTAATCTACTCCACTGCAAACTCAG
** *
6084784 GGGGATAAGATTCACCACCTTCAGTCTGCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTC
261 GAAGATAAGATTCACCACCTTCAGTCTGCCCAATTCAACTTCAGGGGGATAAGACTTGCTTTCTC
** *
6084849 AGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATATATTCTACGGACACTTAAGA
326 AGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATATAGCCTACGCACACTTAAGA
* * * *
6084914 GAGATAGGATATATTATTTGAATCCGCTCCACTGCAACTTTAGGG
391 GAGATAAGATATATTATTCGAATCCGCTCCACTCCAACTTCAGGG
6084959 AGATGAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGAAGATAAGATTCACCATCTTCA
1 AGATGAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGAAGATAAGATTCACCATCTTCA
* * * *
6085024 GTCTGCCCCACTTCAACTTTAGGGGGATAAGACTT-CATTTCTCAGTCTGCTCCGCTGTAAACTT
66 GTCTGCACCACTTCAACTTCAGGGGGATAAGACTTGC-TTTCTCAGTCTGCTCCGCTGCAACCTT
* * * *
6085088 AGGGAGATAATACCTGATGCAATCTACCCTACTGCAAATTCAGAGAGATAAGATCTTTTATTTGA
130 AGGGAGATAAGACCTGATGCAATCTACCCTACTGCAACTTCAGAGAGATAAGATCTATTATTCGA
* * * *
6085153 ATCCGCTCCATTACAACTTTAGAGAGATGGGATTACTGGCATTAATCTACTCCATTGCAAACTCA
195 ATCCGCTCCATTACAACTTCAGAGAGATGAGATTACTAGCATTAATCTACTCCACTGCAAACTCA
* * *
6085218 GGAAGATAAGATTCACCATCTTCAGTTTGCCCCAATTCAACTTTAGGGGGATAAGACTTGCTTTC
260 GGAAGATAAGATTCACCACCTTCAGTCTG-CCCAATTCAACTTCAGGGGGATAAGACTTGCTTTC
* * *
6085283 TCAGTCTGCTCCGTTGCAACCTCAGGGAGATAAGACCTGATGCGATCTAGCCTACTGCA-ACTTC
324 TCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATATAGCCTAC-GCACACTTA
*
6085347 AGAGAGATAAGATCTATTATTCGAATCCGCTCCACTCCAACTTCAGGG
388 AGAGAGATAAGATATATTATTCGAATCCGCTCCACTCCAACTTCAGGG
* * * ** *
6085395 AGATGAGATTACTGGCTTTAATCTACTCCACTGTAAACTTAGGGAGATAAGATTTGCCATCTTTA
1 AGATGAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGAAGATAAGATTCACCATCTTCA
* * *
6085460 GTATG-ACCACTTCAACTTCAGGGGGATTAGACTTGCTTTCTTAGTCTGCTCCGCTGCAACCTTA
66 GTCTGCACCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTTA
* * * * ** * * * *
6085524 GGGATATAAGACTTGATGCAATCCACTCTACAACAACTTTAGAGAGATAAGATCTGTTATCCAAA
131 GGGAGATAAGACCTGATGCAATCTACCCTACTGCAACTTCAGAGAGATAAGATCTATTATTCGAA
* *
6085589 TTCGCTCCATTACTACTTCAG
196 TCCGCTCCATTACAACTTCAG
6085610 GGANNNNNNN
Statistics
Matches: 579, Mismatches: 68, Indels: 8
0.88 0.10 0.01
Matches are distributed among these distances:
434 1 0.00
435 381 0.66
436 195 0.34
437 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (435 bp):
AGATGAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGAAGATAAGATTCACCATCTTCA
GTCTGCACCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTTA
GGGAGATAAGACCTGATGCAATCTACCCTACTGCAACTTCAGAGAGATAAGATCTATTATTCGAA
TCCGCTCCATTACAACTTCAGAGAGATGAGATTACTAGCATTAATCTACTCCACTGCAAACTCAG
GAAGATAAGATTCACCACCTTCAGTCTGCCCAATTCAACTTCAGGGGGATAAGACTTGCTTTCTC
AGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATATAGCCTACGCACACTTAAGA
GAGATAAGATATATTATTCGAATCCGCTCCACTCCAACTTCAGGG
Found at i:6087488 original size:45 final size:45
Alignment explanation
Indices: 6087400--6087521 Score: 122
Period size: 45 Copynumber: 2.7 Consensus size: 45
6087390 ACCGGCTTTA
* *
6087400 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCG
1 ATCTACTCCACTACAAACTCAGGGAGATAAGATTTGACATCTTCG
* * * *
6087445 ATCTACTCCACTAC-TACTTAGGGAGGATAAGATTCT-ACTTCTTCT
1 ATCTACTCCACTACAAACTCAGGGA-GATAAGATT-TGACATCTTCG
* * *
6087490 ATCTACTCCGCTGCAACCTCAAGGGAGATAAG
1 ATCTACTCCACTACAAACTC-AGGGAGATAAG
6087522 GTTCACAATC
Statistics
Matches: 62, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
44 8 0.13
45 40 0.65
46 9 0.15
47 5 0.08
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (45 bp):
ATCTACTCCACTACAAACTCAGGGAGATAAGATTTGACATCTTCG
Found at i:6087564 original size:91 final size:90
Alignment explanation
Indices: 6087400--6087567 Score: 205
Period size: 91 Copynumber: 1.9 Consensus size: 90
6087390 ACCGGCTTTA
** * * *
6087400 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTACTCCACTACTACTTA
1 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACAATCTTCGATCTACCCCACTACAACTTA
6087465 GGGAGGATAAGATTCTACTTCTTCT
66 GGGAGGATAAGATTCTACTTCTTCT
* * * *
6087490 ATCTACTCCGCTGCAACCTCAAGGGAGATAAGGTTCACAATCTTC-AGTCTACCCCACTTCAACT
1 ATCTACTCCACTGCAAACTC-AGGGAGATAAGATTCACAATCTTCGA-TCTACCCCACTACAACT
*
6087554 TCAGTG-GGATAAGA
64 T-AGGGAGGATAAGA
6087568 CTTGCTTTCT
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
90 19 0.29
91 43 0.66
92 3 0.05
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.28
Consensus pattern (90 bp):
ATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACAATCTTCGATCTACCCCACTACAACTTA
GGGAGGATAAGATTCTACTTCTTCT
Found at i:6087889 original size:218 final size:218
Alignment explanation
Indices: 6087490--6088234 Score: 972
Period size: 218 Copynumber: 3.4 Consensus size: 218
6087480 TACTTCTTCT
* * * * * *
6087490 ATCTACTCCGCTGCAACCTCAAGGGAGATAAGGTTCACAATCTTCAGTCTACCCCACTTCAACTT
1 ATCTACTCCACTGCAAACTC-AGGGAGATAAGATTCACCATCTTCAATCTGCCCCACTTCAACTT
* * * * * * *
6087555 CAGTGGGATAAGACTTGCTTTCTTAGTCTTCTCTGCTGCAACCTTTGGGATATAAGACTTGATGC
65 CAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGC
* * *
6087620 GAACTACTCTACAGCAACTTCAGAGAGATAAGATATGTTATTTGAATCCGCTCCATTGCAACTTC
130 GATCTACTCTACTGCAACTTCAGAGAGATAGGATATGTTATTTGAATCCGCTCCATTGCAACTTC
6087685 AGGGAGATGGGATTACTGGCTTTA
195 AGGGAGATGGGATTACTGGCTTTA
* *
6087709 ATCTACTCCACTGTAAACTCAGGGAGATAAGATTCACCATCTTTAATCTGCCCCACTTCAACTTC
1 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAATCTGCCCCACTTCAACTTC
* *
6087774 AGGGGGATAAGACTTGCTTTCTCAGCCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCG
66 AGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCG
* * * * * * * *
6087839 ATCAACTCTACTGCTACTTCAGAGAGATTGGATCTATTATTTGAATCCGCTCTACTGAAACTTCA
131 ATCTACTCTACTGCAACTTCAGAGAGATAGGATATGTTATTTGAATCCGCTCCATTGCAACTTCA
6087904 GGGAGATGGGATTACTGGCTTTA
196 GGGAGATGGGATTACTGGCTTTA
* * * *** * * * * **
6087927 ATCTACTCCACTGCATACTTAGGGGGATAAGATTTGGCATTTTCGATCTGCTCCACTACTGCTTC
1 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAATCTGCCCCACTTCAACTTC
* * *
6087992 AAGGGGATAAGACTGGCTTTCTCAGTCTGCTCCGCTACAACCTTAGGGAGATAAGACCTGATGCG
66 AGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCG
* * * *
6088057 ATCTACTCTACTGCAACTTCAGAGAGATAGGATTTGTTATTTGAATCTGCTGC-TCTACAACTTC
131 ATCTACTCTACTGCAACTTCAGAGAGATAGGATATGTTATTTGAATCCGCTCCAT-TGCAACTTC
* *
6088121 AGGGAGATGAGATTACTAGCTTTA
195 AGGGAGATGGGATTACTGGCTTTA
* * * *
6088145 ATCTAATCCACTGCAAACTAAGGGAGATAAGATTCACCATATTCAATCTG-CCCATTTCAACTTC
1 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAATCTGCCCCACTTCAACTTC
*
6088209 AGGGGGTTAAGACTTGCTTTCTCAGT
66 AGGGGGATAAGACTTGCTTTCTCAGT
6088235 NNNNNNNNNN
Statistics
Matches: 448, Mismatches: 77, Indels: 4
0.85 0.15 0.01
Matches are distributed among these distances:
217 32 0.07
218 399 0.89
219 17 0.04
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (218 bp):
ATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAATCTGCCCCACTTCAACTTC
AGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCG
ATCTACTCTACTGCAACTTCAGAGAGATAGGATATGTTATTTGAATCCGCTCCATTGCAACTTCA
GGGAGATGGGATTACTGGCTTTA
Found at i:6089415 original size:217 final size:216
Alignment explanation
Indices: 6088904--6089996 Score: 1331
Period size: 217 Copynumber: 5.0 Consensus size: 216
6088894 NNNNNNNNNN
*
6088904 TCAGGGAGATAAGACCTGATGCGATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTTATTT
1 TCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTT
* * * * * *
6088969 GAATCTGCTCCATTGGAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACCCCACTGCAAACT
66 GAATCCGCTCCACTGCAACTTCAGGGAGACGGGATTACTGGCTTTAATCTACTCCACTGCAAACT
* * * *
6089034 TAGGAAGATAGGATTTACCATTTTCGATCTGCTCCACTACTGCTTCTAGGGGATAAGA-CTTGCT
131 CAGGGAGATAAGATTTACCATCTTCGATCTGCTCCACTACTGC-T-TAGGGGATAAGATC-TGCT
* * * *
6089098 TTTTCAGTCTGCTCCGCAGTAACC
193 TCTTCGGTCTGCTCCGCTGCAACC
* * * * * * *
6089122 TTAGGGAGATAAGACCTGATGCGATCTACTCTACTGGAACTTTAGAGAGGTAGGATATATTATTT
1 TCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTT
* * * * * *
6089187 GAATTCGCTCCACCGCAACTTTAGGGAGACGGGCA-CACTGGTTTTAATCCACTCCACTGCAAAC
66 GAATCCGCTCCACTGCAACTTCAGGGAGACGGG-ATTACTGGCTTTAATCTACTCCACTGCAAAC
* *
6089251 TCAGGGAGATAAGATTTTCCATCTTCGATCTGCTCCACTACTTCTTAGGGAGATAAGATCTGCTT
130 TCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCACTACTGCTTAGGG-GATAAGATCTGCTT
* *
6089316 CTTCGGTTTACTCCGCTGCAACC
194 CTTCGGTCTGCTCCGCTGCAACC
* * ** *
6089339 TCAGGGAGATAAGACGTGATTCGATCTACTCTACTGCAACTTTGGAGAGATAAGATATGTTATTT
1 TCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTT
* *** * *
6089404 GAATCCGCTCCACTACAACTTCAGGGAGA-TTAATTACTAGCTTTAATCTAATCCACTGCAAACT
66 GAATCCGCTCCACTGCAACTTCAGGGAGACGGGATTACTGGCTTTAATCTACTCCACTGCAAACT
* * *
6089468 CAGGGAGATAAGATTCACAATCTTCGATCTGCTCCACTACTGCTTCAAGGGCATAAGA-CTTGCT
131 CAGGGAGATAAGATTTACCATCTTCGATCTGCTCCACTACTGCTT--AGGGGATAAGATC-TGCT
* *
6089532 T-TCTCAGTCTGCTCCGCTACAACC
193 TCT-TCGGTCTGCTCCGCTGCAACC
* * * * *
6089556 TTAGGGAGATAAGACTTGATGTGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTT
1 TCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTT
* * *
6089621 GGATTCGTTCCACTGCAACTTC-GAGGAGACGGGA-TACTGGCTTTAATCTACTCCACTGC-AAC
66 GAATCCGCTCCACTGCAACTTCAG-GGAGACGGGATTACTGGCTTTAATCTACTCCACTGCAAAC
* * * * * *
6089683 CCAAGGAGATAAGACTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGGTAAGATATGCTT
130 TCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCACTACTGCTTAGGG-GATAAGATCTGCTT
6089748 CTTCGGTCTGCTCCGCTGCAACC
194 CTTCGGTCTGCTCCGCTGCAACC
** * *
6089771 TCAGGGAGATAAGATGTGATGCGATCTACTGTACTGCAACTTCAGAGAGATAAGACCTGTTATTT
1 TCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTT
* * *
6089836 GAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTCGTTTTAATCTACTCCACTGCAAACT
66 GAATCCGCTCCACTGCAACTTCAGGGAGACGGGATTACTGGCTTTAATCTACTCCACTGCAAACT
* * *
6089901 CAGGGAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGTGATAGGATCTGCTTC
131 CAGGGAGATAAGATTTACCATCTTCGATCTGCTCCACTACTGCTTAGGG-GATAAGATCTGCTTC
* * *
6089966 TCCGGT-TAGCTCCGCTGTACCC
195 TTCGGTCT-GCTCCGCTGCAACC
6089988 TCAGGGAGA
1 TCAGGGAGA
6089997 CGGGATTACT
Statistics
Matches: 741, Mismatches: 117, Indels: 35
0.83 0.13 0.04
Matches are distributed among these distances:
214 4 0.01
215 115 0.16
216 143 0.19
217 327 0.44
218 151 0.20
219 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.29
Consensus pattern (216 bp):
TCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTT
GAATCCGCTCCACTGCAACTTCAGGGAGACGGGATTACTGGCTTTAATCTACTCCACTGCAAACT
CAGGGAGATAAGATTTACCATCTTCGATCTGCTCCACTACTGCTTAGGGGATAAGATCTGCTTCT
TCGGTCTGCTCCGCTGCAACC
Found at i:6090005 original size:132 final size:132
Alignment explanation
Indices: 6089843--6090128 Score: 362
Period size: 132 Copynumber: 2.2 Consensus size: 132
6089833 TTTGAATCCG
* * * * *
6089843 CTCCACTGCAACTTCAGGGAGATGGGATTACTCGTTTTAATCTACTCCACTGCAAA-CTCAGGGA
1 CTCCGCTGCAACATCAGGGAGACGGGATTACTCGCTTTAATCTACTCCACTGCAAACCT-AAGGA
* * * *
6089907 GATAAGA-TTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGTGATAGGATCTGCTTCTCCGG
65 GATAAGACTT-ACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATATGCTTCTCCGG
6089971 T-TA
129 TCTA
* * * * *
6089974 GCTCCGCTGTACCCTCAGGGAGACGGGATTACTGGCTTTAATCTACTCCACTGTAAACCTAAGGA
1 -CTCCGCTGCAACATCAGGGAGACGGGATTACTCGCTTTAATCTACTCCACTGCAAACCTAAGGA
* * * *
6090039 GATAAGACTTGCCATCTTCGATCTGCTCCGCTACTGCTTAGGGAGGTAAGATATGCTTCTTCGGT
65 GATAAGACTTACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATATGCTTCTCCGGT
6090104 CTA
130 CTA
6090107 CTCCGCTGCAACATCAGGGAGA
1 CTCCGCTGCAACATCAGGGAGA
6090129 TAAGACCTGA
Statistics
Matches: 131, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
132 125 0.95
133 6 0.05
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (132 bp):
CTCCGCTGCAACATCAGGGAGACGGGATTACTCGCTTTAATCTACTCCACTGCAAACCTAAGGAG
ATAAGACTTACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATATGCTTCTCCGGTC
TA
Found at i:6090075 original size:349 final size:347
Alignment explanation
Indices: 6089645--6090345 Score: 1197
Period size: 349 Copynumber: 2.0 Consensus size: 347
6089635 GCAACTTCGA
*
6089645 GGAGACGGGATACTGGCTTTAATCTACTCCACTGCAACCCAAGGAGATAAGACTTGCCATCTTCG
1 GGAGACGGGATACTGGCTTTAATCTACTCCACTGAAACCCAAGGAGATAAGACTTGCCATCTTCG
* *
6089710 ATCTGCTCCACTACTGCTTAGGGAGGTAAGATATGCTTCTTCGGTCTGCTCCGCTGCAACCTCAG
66 ATCTGCTCCACTACTGCTTAGGGAGGTAAGATATGCTTCTTCGGTCTACTCCGCTGCAACATCAG
** *
6089775 GGAGATAAGATGTGATGCGATCTACTGTACTGCAACTTCAGAGAGATAAGACCTGTTATTTGAAT
131 GGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGACCTGTTATTTGAAT
6089840 CCGCTCCACTGCAACTTCAGGGAGATGGGATTACTCGTTTTAATCTACTCCACTGCAAACTCAGG
196 CCGCTCCACTGCAACTTCAGGGAGATGGGATTACTCGTTTTAATCTACTCCACTGCAAACTCAGG
* * *
6089905 GAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGTGATAGGATCTGCTTCTCCG
261 GAGATAAGATTCACCATCTTCGATCGGCTCCACTACTGCTTAGGGAGATAGGATCTGCTTCTCCG
*
6089970 GT-TAGCTCCGCTGTACCCTCAG
326 GTCT-GCTCCGCTGTAACCTCAG
*
6089992 GGAGACGGGATTACTGGCTTTAATCTACTCCACTGTAAACCTAAGGAGATAAGACTTGCCATCTT
1 GGAGACGGGA-TACTGGCTTTAATCTACTCCACTG-AAACCCAAGGAGATAAGACTTGCCATCTT
*
6090057 CGATCTGCTCCGCTACTGCTTAGGGAGGTAAGATATGCTTCTTCGGTCTACTCCGCTGCAACATC
64 CGATCTGCTCCACTACTGCTTAGGGAGGTAAGATATGCTTCTTCGGTCTACTCCGCTGCAACATC
*
6090122 AGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGA
129 AGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGACCTGTTATTTGA
* * *
6090187 ATCCGCTCCACTGCAATTTCAGGGAGATGGGATTACTCGTTTTAATCTACTCTACTGCAAACTTA
194 ATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTCGTTTTAATCTACTCCACTGCAAACTCA
** *
6090252 GGGAGATAAGATTTGCCATCTTCGATCGGCTCCACTACTGCTTAGGGAGATAGGATCTGCTTCTT
259 GGGAGATAAGATTCACCATCTTCGATCGGCTCCACTACTGCTTAGGGAGATAGGATCTGCTTCTC
6090317 CGGTCTGCTCCGCTGTAACCTCAG
324 CGGTCTGCTCCGCTGTAACCTCAG
6090341 GGAGA
1 GGAGA
6090346 TAAGACGTGA
Statistics
Matches: 332, Mismatches: 19, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
347 10 0.03
348 24 0.07
349 297 0.89
350 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (347 bp):
GGAGACGGGATACTGGCTTTAATCTACTCCACTGAAACCCAAGGAGATAAGACTTGCCATCTTCG
ATCTGCTCCACTACTGCTTAGGGAGGTAAGATATGCTTCTTCGGTCTACTCCGCTGCAACATCAG
GGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGACCTGTTATTTGAAT
CCGCTCCACTGCAACTTCAGGGAGATGGGATTACTCGTTTTAATCTACTCCACTGCAAACTCAGG
GAGATAAGATTCACCATCTTCGATCGGCTCCACTACTGCTTAGGGAGATAGGATCTGCTTCTCCG
GTCTGCTCCGCTGTAACCTCAG
Found at i:6090213 original size:649 final size:651
Alignment explanation
Indices: 6088904--6090214 Score: 1419
Period size: 649 Copynumber: 2.0 Consensus size: 651
6088894 NNNNNNNNNN
*
6088904 TCAGGGAGATAAGACCTGATGCGATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTTATTT
1 TCAGGGAGATAAGACCTGATGCGATCTACTCTACTACAACTTCAGAGAGATAAGATCTATTATTT
* * * *
6088969 GAATCTGCTCCATTGGAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACCCCACTGCAAACT
66 GAATCTGCTCCACTGCAACTTCAGGGAGACGAGATTACTGGCTTTAATCTACCCCACTGCAAACC
* * * *
6089034 TAGGAAGATAGGATTTACCATTTTCGATCTGCTCCACTACTGCTTCTAGGGGATAAGACTTGCTT
131 AAGGAAGATAAGACTTACCATCTTCGATCTGCTCCACTACTGCTTCTAGGGGATAAGACTTGCTT
* * * *
6089099 TTTCAGTCTGCTCCGCAGTAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGGAACTT
196 CTTCAGTCTGCTCCGCAGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTT
* * * * * * *
6089164 TAGAGAGGTAGGATATATTATTTGAATTCGCTCCACCGCAACTTTAGGGAGACGGGCACACTGGT
261 CAGAGAGATAAGACATATTATTTGAATCCGCTCCACCGCAACTTCAGGGAGACGGGCACACTCGT
** *
6089229 TTTAATCCACTCCACTGCAAACTCAGGGAGATAAGATTTTCCATCTTCGATCTGCTCCACTACTT
326 TTTAATCCACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTACTG
* *
6089294 CTTAGGGAGATAAGATCTGCTTCTTCGGTTTACTCCGCTGCAACCTCAGGGAGATAAGACGTGAT
391 CTTAGGGAGATAAGATCTGCTTCTCCGGTTTACTCCGCTGCAACCTCAGGGAGAGAAGACGTGAT
* * * * ** **
6089359 TCGATCTACTCTACTGCAACTTTGGAGAGATAAGATATGTTATTTGAATCCGCTCCACTACAACT
456 TCAATCTACTCCACTGAAACCTAAGAGAGATAAGATATGCCATTTGAATCCGCTCCACTACAACT
* *
6089424 TCAGGGAGATTAATTACTAGCTTTAATCTAATCCACTGCAAACTCAGGGAGATAAGATTCACAAT
521 TCAGGGAGATAAATTACTAGCTTCAATCTAATCCACTGCAAACTCAGGGAGATAAGA-TCAC-AT
* * * ** * * * *
6089489 CTTCGATCTGCTCCACTACTGCTTCAAGGGCATAAGACTTGCTTTCTCAGTCTGCTCCGCTACAA
584 ATGCGATCTACTCCACTACAACTTCAAGAGCATAAGACTTGCTTTCTCAATCCGCTCCACTACAA
6089554 CCT
649 CCT
* * * *
6089557 T-AGGGAGATAAGACTTGATGTGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTT
1 TCAGGGAGATAAGACCTGATGCGATCTACTCTACTACAACTTCAGAGAGATAAGATCTATTATTT
* * * * *
6089621 GGAT-TCGTTCCACTGCAACTTC-GAGGAGACGGGA-TACTGGCTTTAATCTACTCCACTGCAAC
66 GAATCT-GCTCCACTGCAACTTCAG-GGAGACGAGATTACTGGCTTTAATCTACCCCACTGCAAA
* *
6089683 CCAAGG-AGATAAGACTTGCCATCTTCGATCTGCTCCACTACTGC-T-TAGGGAGGTAAGA-TAT
129 CCAAGGAAGATAAGACTTACCATCTTCGATCTGCTCCACTACTGCTTCTAGGG-GATAAGACT-T
* * ** *
6089744 GCTTCTTCGGTCTGCTCCGCTGCAACCTCAGGGAGATAAGATGTGATGCGATCTACTGTACTGCA
192 GCTTCTTCAGTCTGCTCCGCAGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCA
* * * * *
6089809 ACTTCAGAGAGATAAGACCTGTTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGG-ATTA
257 ACTTCAGAGAGATAAGACATATTATTTGAATCCGCTCCACCGCAACTTCAGGGAGACGGGCA-CA
* *
6089873 CTCGTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTGATCTGCTCCAC
321 CTCGTTTTAATCCACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCGATCTGCTCCAC
* * * *
6089938 TACTGCTTAGGGTGATAGGATCTGCTTCTCCGG-TTAGCTCCGCTGTACCCTCAGGGAGACGGGA
386 TACTGCTTAGGGAGATAAGATCTGCTTCTCCGGTTTA-CTCCGCTGCAACCTCAGGGAGA---GA
** * * *
6090002 TTAC-TGGCTTTAATCTACTCCACTGTAAACCTAAG-GAGATAAGACT-TGCCATCTTCG-ATCT
447 AGACGT-GATTCAATCTACTCCACTG-AAACCTAAGAGAGATAAGA-TATGCCAT-TT-GAATCC
* ** * * * ** * *
6090063 GCTCCGCTACTGCTT-AGGGAGGTAAGATATGCT-TCTTCGGTCTACTCCGCTGC-AACATCAGG
507 GCTCCACTACAACTTCAGGGAGATAA-AT-TACTAGCTTCAATCTAATCCACTGCAAAC-TCAGG
* * *
6090125 GAGATAAGA-C-C-TGATGCGATCTACTCTACTGCAACTTCAGAGAG-ATAAGA-TCTG-TTATT
569 GAGATAAGATCACAT-ATGCGATCTACTCCACTACAACTTCA-AGAGCATAAGACT-TGCTT-TC
* * *
6090184 TGAATCCGCTCCACTGCAA-TT
630 TCAATCCGCTCCACTACAACCT
6090205 TCAGGGAGAT
1 TCAGGGAGAT
6090215 GGGATTACTC
Statistics
Matches: 544, Mismatches: 92, Indels: 48
0.80 0.13 0.07
Matches are distributed among these distances:
648 16 0.03
649 274 0.50
650 38 0.07
651 34 0.06
652 124 0.23
653 54 0.10
654 4 0.01
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.29
Consensus pattern (651 bp):
TCAGGGAGATAAGACCTGATGCGATCTACTCTACTACAACTTCAGAGAGATAAGATCTATTATTT
GAATCTGCTCCACTGCAACTTCAGGGAGACGAGATTACTGGCTTTAATCTACCCCACTGCAAACC
AAGGAAGATAAGACTTACCATCTTCGATCTGCTCCACTACTGCTTCTAGGGGATAAGACTTGCTT
CTTCAGTCTGCTCCGCAGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTT
CAGAGAGATAAGACATATTATTTGAATCCGCTCCACCGCAACTTCAGGGAGACGGGCACACTCGT
TTTAATCCACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTACTG
CTTAGGGAGATAAGATCTGCTTCTCCGGTTTACTCCGCTGCAACCTCAGGGAGAGAAGACGTGAT
TCAATCTACTCCACTGAAACCTAAGAGAGATAAGATATGCCATTTGAATCCGCTCCACTACAACT
TCAGGGAGATAAATTACTAGCTTCAATCTAATCCACTGCAAACTCAGGGAGATAAGATCACATAT
GCGATCTACTCCACTACAACTTCAAGAGCATAAGACTTGCTTTCTCAATCCGCTCCACTACAACC
T
Found at i:6090259 original size:217 final size:216
Alignment explanation
Indices: 6089988--6092141 Score: 2473
Period size: 217 Copynumber: 9.9 Consensus size: 216
6089978 CGCTGTACCC
* * * * * *
6089988 TCAGGGAGACGGGATTACTGGCTTTAATCTACTCCACTGTAAAC-CTAAGGAGATAAGACTTGCC
1 TCAGGGAGATGGGATTACTCGCTTTAATCTACTCCACTGCAAACTC-AGGGAGATAAGATTTACC
* * * * *
6090052 ATCTTCGATCTGCTCCGCTACTGCTTAGGGAGGTAAGATATGCTTCTTCGGTCTACTCCGCTGCA
65 ATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGAT-TGCTTCTTCAGTCTGCTCCGCTGCA
*
6090117 ACATCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTA
129 ACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTA
6090182 TTTGAATCCGCTCCACTGCAATT
194 TTTGAATCCGCTCCACTGCAATT
* * * *
6090205 TCAGGGAGATGGGATTACTCGTTTTAATCTACTCTACTGCAAACTTAGGGAGATAAGATTTGCCA
1 TCAGGGAGATGGGATTACTCGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCA
* * * * *
6090270 TCTTCGATCGGCTCCACTACTGCTTAGGGAGATAGGATCTGCTTCTTCGGTCTGCTCCGCTGTAA
66 TCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGAT-TGCTTCTTCAGTCTGCTCCGCTGCAA
* *
6090335 CCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGAGATATGATCTGTTAT
130 CCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTAT
* * *
6090400 TTGAATCTGCTCCACTACAACT
195 TTGAATCCGCTCCACTGCAATT
* * ** * * * *
6090422 TCAGGGATATGAGATTACTAACTTTAATTTACTCCACTGTAAACTCAGGGAGATAAGATTCAGCA
1 TCAGGGAGATGGGATTACTCGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCA
* * * * * * * * * * * *
6090487 TATTCAATCTGCCCCATTTCAACTTCAGGGGGTTAAGACTTGCTTTTTCAGTTTGCTTCGTTGCA
66 TCTTCGATCTGCTCCACTACTACTT-AGGGAGATAAGA-TTGCTTCTTCAGTCTGCTCCGCTGCA
* * * * *
6090552 ACCTTAGGGACATAAGACTTGATACGATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTTA
129 ACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTA
* * * *
6090617 TTCGAATCTGCTCCATTACAACTT
194 TTTGAATCCGCTCCACTGCAA-TT
* * * ** * ** * *
6090641 T-AGGGAGATGGGATTGCTGGCTTTAATCTTCTCCACAACAAACTTAATGAGATAAGATTCACAA
1 TCAGGGAGATGGGATTACTCGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCA
* * * * *
6090705 TCTTC-AGTCTG-GCCACTTCAACTTTAGGGGGATAAGACCTGCTT-TCTCAGTCTGCTCCGCTG
66 TCTTCGA-TCTGCTCCACTACTAC-TTAGGGAGATAAGA-TTGCTTCT-TCAGTCTGCTCCGCTG
* * * * *
6090767 CAACCTCAGGGAGATAAGACCTGATGCGATGTACTCTACTGTAACTTCAGAGTGATAGGATCTAT
127 CAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
* * *
6090832 TATTTGCATCCGCTTCACTGCAACT
192 TATTTGAATCCGCTCCACTGCAATT
** * * * *
6090857 TCAGATAGATGAGATTACTGGCTTTAATCTACTACACTGCAAACTCAGGGAGATAAGATTTGCCA
1 TCAGGGAGATGGGATTACTCGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCA
* * * *
6090922 TATTCGATCTGCTCCACTACTGCTTCAGTGG-GATAAGACTTGCTT-TCCCATTCTGCTCCGCTG
66 TCTTCGATCTGCTCCACTACTACTT-AG-GGAGATAAGA-TTGCTTCT-TCAGTCTGCTCCGCTG
* * * * * *
6090985 TAATCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTTAGAGAGATAGGATCTAT
127 CAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
6091050 TATTTGAATCCGCTCCACTGCAACTT
192 TATTTGAATCCGCTCCACTGCAA-TT
* ** * * *
6091076 T-AGGGATATGCAATTACTC-ATATTAATCCACTCCACTGCAAACTCAGGGAGATAAGATTTGCC
1 TCAGGGAGATGGGATTACTCGCT-TTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACC
* * *
6091139 ATCATCGATCTGCTCCACTACTGCTTAGGGAGATAAGATATGCTTCTTCGGTCTGCTCCGCTGCA
65 ATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGAT-TGCTTCTTCAGTCTGCTCCGCTGCA
*
6091204 ACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTA
129 ACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTA
* *
6091269 TTTGAATACGCTCCAGTGCAACTT
194 TTTGAATCCGCTCCACTGCAA-TT
*
6091293 T-AGGGAGATGGGATTACTCGTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCA
1 TCAGGGAGATGGGATTACTCGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCA
* *
6091357 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATATGCTTCTTCGGTCTGCTCCGCTGCAA
66 TCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGAT-TGCTTCTTCAGTCTGCTCCGCTGCAA
* *
6091422 CCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTTAT
130 CCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTAT
* * *
6091487 TTGAATACGCTCCAGTGTAACTT
195 TTGAATCCGCTCCACTGCAA-TT
*
6091510 T-AGGGAGATGGGATTACTCGTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCA
1 TCAGGGAGATGGGATTACTCGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCA
* *
6091574 TCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCTTCTTCGGTCTGCTCCGCTGTAA
66 TCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGAT-TGCTTCTTCAGTCTGCTCCGCTGCAA
* * *
6091639 CCTTAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGAGATATGATCTGTTAT
130 CCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTAT
** ** * *
6091704 TTGAATTTGCTCCTTTACAACT
195 TTGAATCCGCTCCACTGCAATT
* * * *
6091726 TCAGGGAGATGAGATTCCTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCA
1 TCAGGGAGATGGGATTACTCGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCA
* * * * * * * * * * * * *
6091791 TATTCAATCTGCCCCATTTCAACTTCAGGGGGTTAAGACTTTCTTTTTCAGTTTGTTTCGCTGCA
66 TCTTCGATCTGCTCCACTACTACTT-AGGGAGATAAGA-TTGCTTCTTCAGTCTGCTCCGCTGCA
* * * * * *
6091856 ACCTTAGAGATATAAGACTTGATACGATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTTA
129 ACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTA
** * * *
6091921 TACGAATCCGCTCCATTACAACT
194 TTTGAATCCGCTCCACTGCAATT
* * * *
6091944 TCAGGGAGATGGGATTACTGGTTTTAATCTACTCCACTGCAAACTCAGGGATATAAGATTCACCA
1 TCAGGGAGATGGGATTACTCGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCA
* * * * *
6092009 TCTT-TAGTCTGC-CCACTTCAACTTCAGGGAGATAAGACTTACTT-TCTCAGTCTGCGCCGCTG
66 TCTTCGA-TCTGCTCCACTACTACTT-AGGGAGATAAGA-TTGCTTCT-TCAGTCTGCTCCGCTG
* * *
6092071 CAACCTCAGGGAGATAAGACCTGATGCGATGTACTCTACTACAACTTCAGAGAGATAAGATCTAT
127 CAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
6092136 TATTTG
192 TATTTG
6092142 NNNNNNNNNN
Statistics
Matches: 1683, Mismatches: 231, Indels: 46
0.86 0.12 0.02
Matches are distributed among these distances:
216 9 0.01
217 1134 0.67
218 532 0.32
219 8 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (216 bp):
TCAGGGAGATGGGATTACTCGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCA
TCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATTGCTTCTTCAGTCTGCTCCGCTGCAAC
CTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATT
TGAATCCGCTCCACTGCAATT
Found at i:6090648 original size:435 final size:435
Alignment explanation
Indices: 6089988--6092141 Score: 2641
Period size: 435 Copynumber: 5.0 Consensus size: 435
6089978 CGCTGTACCC
* * * * * *
6089988 TCAGGGAGACGGGATTACTGGCTTTAATCTACTCCACTGTAAAC-CTAAGGAGATAAGACTT-GC
1 TCAGGGAGATGAGATTACTAGCTTTAATCTACTCCACTGCAAACTC-AGGGAGATAAGA-TTCAC
* * * * ** * * * *
6090051 CATCTTCGATCTGCTCCGCTACTGCTT-AGGGAGG-TAAGA-TATGCTTCTTCGGTCTACTCCGC
64 CATATTCAATCTGCCCCACTACAACTTCAGGG-GGATAAGACT-TGCTTTTTCAGTTTGCTCCGC
* *
6090113 TGCAACATCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCT
127 TGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCT
*
6090178 GTTATTTGAATCCGCTCCACTGCAA-TTTCAGGGAGATGGGATTACTCGTTTTAATCTACTCTAC
192 GTTATTTGAATCCGCTCCACTGCAACTTT-AGGGAGATGGGATTACTCGTTTTAATCTACTCCAC
* * * * *
6090242 TGCAAACTTAGGGAGATAAGATTTGCCATCTTCGATCGGCTCCACTACTGCTTAGGGAGATAGGA
256 TGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGA
*
6090307 TCTGCTTCTTCGGTCTGCTCCGCTGTAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACT
321 TCTGCTTCTTCGGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACT
*
6090372 GCAACTTCAGAGAGATATGATCTGTTATTTGAATCTGCTCCACTACAACT
386 GCAACTTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTACAACT
* * * * *
6090422 TCAGGGATATGAGATTACTAACTTTAATTTACTCCACTGTAAACTCAGGGAGATAAGATTCAGCA
1 TCAGGGAGATGAGATTACTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCA
* * * * *
6090487 TATTCAATCTGCCCCATTTCAACTTCAGGGGGTTAAGACTTGCTTTTTCAGTTTGCTTCGTTGCA
66 TATTCAATCTGCCCCACTACAACTTCAGGGGGATAAGACTTGCTTTTTCAGTTTGCTCCGCTGCA
* * * *
6090552 ACCTTAGGGACATAAGACTTGATACGATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTTA
131 ACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTA
* * * * * * * * **
6090617 TTCGAATCTGCTCCATTACAACTTTAGGGAGATGGGATTGCTGGCTTTAATCTTCTCCACAACAA
196 TTTGAATCCGCTCCACTGCAACTTTAGGGAGATGGGATTACTCGTTTTAATCTACTCCACTGCAA
* ** * * * * * * *
6090682 ACTTAATGAGATAAGATTCACAATCTTC-AGTCTG-GCCACTTCAACTTTAGGGGGATAAGACCT
261 ACTCAGGGAGATAAGATTTACCATCTTCGA-TCTGCTCCACTACTAC-TTAGGGAGATAAGATCT
* * * *
6090745 GCTT-TCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATGTACTCTACTGT
324 GCTTCT-TCGGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGC
* * * * * * *
6090809 AACTTCAGAGTGATAGGATCTATTATTTGCATCCGCTTCACTGCAACT
388 AACTTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTACAACT
** * * **
6090857 TCAGATAGATGAGATTACTGGCTTTAATCTACTACACTGCAAACTCAGGGAGATAAGATTTGCCA
1 TCAGGGAGATGAGATTACTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCA
* * ** * ** *
6090922 TATTCGATCTGCTCCACTACTGCTTCAGTGGGATAAGACTTGCTTTCCCA-TTCTGCTCCGCTGT
66 TATTCAATCTGCCCCACTACAACTTCAGGGGGATAAGACTTGCTTTTTCAGTT-TGCTCCGCTGC
* * * *
6090986 AATCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTTAGAGAGATAGGATCTATT
130 AACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTT
* ** * * *
6091051 ATTTGAATCCGCTCCACTGCAACTTTAGGGATATGCAATTACTCATATTAATCCACTCCACTGCA
195 ATTTGAATCCGCTCCACTGCAACTTTAGGGAGATGGGATTACTCGTTTTAATCTACTCCACTGCA
* * * *
6091116 AACTCAGGGAGATAAGATTTGCCATCATCGATCTGCTCCACTACTGCTTAGGGAGATAAGATATG
260 AACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTG
6091181 CTTCTTCGGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAA
325 CTTCTTCGGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAA
* *
6091246 CTTCAGAGAGATAAGATCTGTTATTTGAATAC-GCTCCAGTGCAACT
390 CTTCAGAGAGATAAGATCTGTTATTTGAAT-CTGCTCCACTACAACT
* * * * *
6091292 TTAGGGAGATGGGATTACTCGTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCA
1 TCAGGGAGATGAGATTACTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCA
* * * ** * * * *
6091357 TCTTCGATCTGCTCCACTACTGCTT-AGGGAGATAAGA-TATGCTTCTTCGGTCTGCTCCGCTGC
66 TATTCAATCTGCCCCACTACAACTTCAGGGGGATAAGACT-TGCTTTTTCAGTTTGCTCCGCTGC
* * *
6091420 AACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTT
130 AACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTT
* * *
6091485 ATTTGAATACGCTCCAGTGTAACTTTAGGGAGATGGGATTACTCGTTTTAATCTACTCCACTGCA
195 ATTTGAATCCGCTCCACTGCAACTTTAGGGAGATGGGATTACTCGTTTTAATCTACTCCACTGCA
6091550 AACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTG
260 AACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTG
* *
6091615 CTTCTTCGGTCTGCTCCGCTGTAACCTTAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAA
325 CTTCTTCGGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAA
* * **
6091680 CTTCAGAGAGATATGATCTGTTATTTGAATTTGCTCCTTTACAACT
390 CTTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTACAACT
*
6091726 TCAGGGAGATGAGATTCCTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCA
1 TCAGGGAGATGAGATTACTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCA
* * * * * *
6091791 TATTCAATCTGCCCCATTTCAACTTCAGGGGGTTAAGACTTTCTTTTTCAGTTTGTTTCGCTGCA
66 TATTCAATCTGCCCCACTACAACTTCAGGGGGATAAGACTTGCTTTTTCAGTTTGCTCCGCTGCA
* * * * *
6091856 ACCTTAGAGATATAAGACTTGATACGATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTTA
131 ACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTA
** * * * *
6091921 TACGAATCCGCTCCATTACAACTTCAGGGAGATGGGATTACTGGTTTTAATCTACTCCACTGCAA
196 TTTGAATCCGCTCCACTGCAACTTTAGGGAGATGGGATTACTCGTTTTAATCTACTCCACTGCAA
* * * * *
6091986 ACTCAGGGATATAAGATTCACCATCTT-TAGTCTGC-CCACTTCAACTTCAGGGAGATAAGA-CT
261 ACTCAGGGAGATAAGATTTACCATCTTCGA-TCTGCTCCACTACTACTT-AGGGAGATAAGATC-
* * * * * *
6092048 TACTT-TCTCAGTCTGCGCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATGTACTCTACTA
323 TGCTTCT-TCGGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTG
*
6092112 CAACTTCAGAGAGATAAGATCTATTATTTG
387 CAACTTCAGAGAGATAAGATCTGTTATTTG
6092142 NNNNNNNNNN
Statistics
Matches: 1465, Mismatches: 232, Indels: 45
0.84 0.13 0.03
Matches are distributed among these distances:
433 3 0.00
434 475 0.32
435 972 0.66
436 15 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (435 bp):
TCAGGGAGATGAGATTACTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCA
TATTCAATCTGCCCCACTACAACTTCAGGGGGATAAGACTTGCTTTTTCAGTTTGCTCCGCTGCA
ACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTA
TTTGAATCCGCTCCACTGCAACTTTAGGGAGATGGGATTACTCGTTTTAATCTACTCCACTGCAA
ACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGC
TTCTTCGGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAAC
TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTACAACT
Found at i:6091213 original size:44 final size:44
Alignment explanation
Indices: 6091106--6091654 Score: 218
Period size: 44 Copynumber: 12.6 Consensus size: 44
6091096 TATTAATCCA
* * * *
6091106 CTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCATCGATCTG
1 CTCCACTGCAACCTCAGGGAGATAAGATATG-CTTCTTCGATCTG
* ** * *
6091151 CTCCACTAC-TGCTTAGGGAGATAAGATATGCTTCTTCGGTCTG
1 CTCCACTGCAACCTCAGGGAGATAAGATATGCTTCTTCGATCTG
* * ** * *
6091194 CTCCGCTGCAACCTCAGGGAGATAAG--ACG-TGATGCGATCTA
1 CTCCACTGCAACCTCAGGGAGATAAGATATGCTTCTTCGATCTG
* * * * * *
6091235 CTCTACTGCAACTTCAGAGAGATAAGATCTG-TTATTTGAATAC-G
1 CTCCACTGCAACCTCAGGGAGATAAGATATGCTTCTTCG-AT-CTG
* * * ** * *
6091279 CTCCAGTGCAACTTTAGGGAGATGGGATTACT-CGTT-TT-AATCTA
1 CTCCACTGCAACCTCAGGGAGATAAGA-TA-TGC-TTCTTCGATCTG
* * * *
6091323 CTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTG
1 CTCCACTGCAACCTCAGGGAGATAAGATAT-GCTTCTTCGATCTG
* ** * *
6091368 CTCCACTAC-TGCTTAGGGAGATAAGATATGCTTCTTCGGTCTG
1 CTCCACTGCAACCTCAGGGAGATAAGATATGCTTCTTCGATCTG
* * ** * *
6091411 CTCCGCTGCAACCTCAGGGAGATAAG--ACG-TGATGCGATCTA
1 CTCCACTGCAACCTCAGGGAGATAAGATATGCTTCTTCGATCTG
* * * * * * *
6091452 CTCTACTGTAACTTCAGAGAGATAAGATCTG-TTATTTGAATAC-G
1 CTCCACTGCAACCTCAGGGAGATAAGATATGCTTCTTCG-AT-CTG
* * * * ** * *
6091496 CTCCAGTGTAACTTTAGGGAGATGGGATTACT-CGTT-TT-AATCTA
1 CTCCACTGCAACCTCAGGGAGATAAGA-TA-TGC-TTCTTCGATCTG
* * * *
6091540 CTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTG
1 CTCCACTGCAACCTCAGGGAGATAAGATAT-GCTTCTTCGATCTG
* * * * *
6091585 CTCCACTACTA-CTTAGGGAGATAAGATCTGCTTCTTCGGTCTG
1 CTCCACTGCAACCTCAGGGAGATAAGATATGCTTCTTCGATCTG
* * *
6091628 CTCCGCTGTAACCTTAGGGAGATAAGA
1 CTCCACTGCAACCTCAGGGAGATAAGA
6091655 CGTGATGCGA
Statistics
Matches: 366, Mismatches: 109, Indels: 59
0.69 0.20 0.11
Matches are distributed among these distances:
41 57 0.16
42 6 0.02
43 69 0.19
44 187 0.51
45 37 0.10
46 6 0.02
47 4 0.01
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (44 bp):
CTCCACTGCAACCTCAGGGAGATAAGATATGCTTCTTCGATCTG
Found at i:6091234 original size:652 final size:649
Alignment explanation
Indices: 6089990--6092141 Score: 2900
Period size: 652 Copynumber: 3.3 Consensus size: 649
6089980 CTGTACCCTC
* * * * *
6089990 AGGGAGACGGGATTACTGGCTTTAATCTACTCCACTGTAAAC-CTAAGGAGATAAGACTT-GCCA
1 AGGGAGATGGGATTACTGGTTTTAATCTACTCCACTGCAAACTC-AGGGAGATAAGA-TTCACCA
* * ** * * * *
6090053 TCTTC-GATCTGCTCCGCTACTGC-TTAGGGAGGTAAGATATGC-TTCTTCGGTCTACTCCGCTG
64 TCTTCAG-TCTGC-CCACTTCAACTTTAGGGAGATAAGACATGCTTTC-TCAGTCTGCTCCGCTG
* *
6090115 CAACATCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
126 CAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTAT
*
6090180 TATTTGAATCCGCTCCACTGCAATTTCAGGGAGATGGGATTACTCGTTTTAATCTACTCTACTGC
191 TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTCGTTTTAATCTACTC-ACTGC
* * *
6090245 AAACTTAGGGAGATAAGATTTGCCATCTTCGATCGGCTCCACTACTGCTTAGGGAGATAGGATCT
255 AAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
*
6090310 GCTTCTTCGGTCTGCTCCGCTGTAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCA
320 GCTTCTTCGGTCTGCTCCGCTGTAACCTTAGGGAGATAAGACGTGATGCGATCTACTCTACTGCA
6090375 ACTTCAGAGAGATATGATCTGTTATTTGAATCTGCTCCACTACAACTTCAGGGATATGAGATTAC
385 ACTTCAGAGAGATATGATCTGTTATTTGAATCTGCTCCACTACAACTTCAGGGATATGAGATTAC
* *
6090440 TAACTTTAATTTACTCCACTGTAAACTCAGGGAGATAAGATTCAG-CATATTCAATCTGCCCCAT
450 T-ACTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATT-AGCCATATTCAATCTGCCCCAT
*
6090504 TTCAACTTCAGGGGGTTAAGACTTGCTTTTTCAGTTTGCTTCGTTGCAACCTTAGGGACATAAGA
513 TTCAACTTCAGGGGGTTAAGACTTGCTTTTTCAGTTTGCTTCGCTGCAACCTTAGGGACATAAGA
6090569 CTTGATACGATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTTATTCGAATCTGCTCCATT
578 CTTGATACGATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTTATTCGAATC-GCTCCATT
6090634 ACAACTTT
642 ACAACTTT
* * * ** * ** *
6090642 AGGGAGATGGGATTGCTGGCTTTAATCTTCTCCACAACAAACTTAATGAGATAAGATTCACAATC
1 AGGGAGATGGGATTACTGGTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATC
* * *
6090707 TTCAGTCTGGCCACTTCAACTTTAGGGGGATAAGACCTGCTTTCTCAGTCTGCTCCGCTGCAACC
66 TTCAGTCTGCCCACTTCAACTTTAGGGAGATAAGACATGCTTTCTCAGTCTGCTCCGCTGCAACC
* * * *
6090772 TCAGGGAGATAAGACCTGATGCGATGTACTCTACTGTAACTTCAGAGTGATAGGATCTATTATTT
131 TCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTT
* * ** * * *
6090837 GCATCCGCTTCACTGCAACTTCAGATAGATGAGATTACTGGCTTTAATCTACTACACTGCAAACT
196 GAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTCGTTTTAATCTACT-CACTGCAAACT
*
6090902 CAGGGAGATAAGATTTGCCATATTCGATCTGCTCCACTACTGCTTCAGTGG-GATAAGA-CTTGC
260 CAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTT-AG-GGAGATAAGATC-TGC
* ** * *
6090965 TT-TCCCATTCTGCTCCGCTGTAATCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAA
322 TTCT-TCGGTCTGCTCCGCTGTAACCTTAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAA
* * * * * *
6091029 CTTTAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTTAGGGATATGCA-ATTAC
386 CTTCAGAGAGATATGATCTGTTATTTGAATCTGCTCCACTACAACTTCAGGGATATG-AGATTAC
* * * *
6091093 T-CATATTAATCCACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCA-TCGATCTGCTCCA
450 TAC-T-TTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTAGCCAT-ATTCAATCTGCCCCA
* * ** * * * * * * * *
6091156 CTACTGCTT-AGGGAGATAAGA-TATGCTTCTTCGGTCTGCTCCGCTGCAACCTCAGGGAGATAA
512 TTTCAACTTCAGGGGGTTAAGACT-TGCTTTTTCAGTTTGCTTCGCTGCAACCTTAGGGACATAA
* * * *
6091219 GACGTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATACGCTCCA
576 GACTTGATACGATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTTATTCGAAT-CGCTCCA
* *
6091284 GTGCAACTTT
640 TTACAACTTT
* *
6091294 AGGGAGATGGGATTACTCGTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATC
1 AGGGAGATGGGATTACTGGTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATC
* ** * *
6091359 TTC-GATCTGCTCCACTACTGC-TTAGGGAGATAAGATATGC-TTCTTCGGTCTGCTCCGCTGCA
66 TTCAG-TCTGC-CCACTTCAACTTTAGGGAGATAAGACATGCTTTC-TCAGTCTGCTCCGCTGCA
* * *
6091421 ACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTTA
128 ACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTA
* * * *
6091486 TTTGAATACGCTCCAGTGTAACTTTAGGGAGATGGGATTACTCGTTTTAATCTACTCCACTGCAA
193 TTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTCGTTTTAATCTACT-CACTGCAA
* *
6091551 ACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGC
257 ACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGC
6091616 TTCTTCGGTCTGCTCCGCTGTAACCTTAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAAC
322 TTCTTCGGTCTGCTCCGCTGTAACCTTAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAAC
* ** * *
6091681 TTCAGAGAGATATGATCTGTTATTTGAATTTGCTCCTTTACAACTTCAGGGAGATGAGATTCCTA
387 TTCAGAGAGATATGATCTGTTATTTGAATCTGCTCCACTACAACTTCAGGGATATGAGATTACTA
6091746 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCA-CCATATTCAATCTGCCCCATTT
452 -CTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATT-AGCCATATTCAATCTGCCCCATTT
* * * *
6091810 CAACTTCAGGGGGTTAAGACTTTCTTTTTCAGTTTGTTTCGCTGCAACCTTAGAGATATAAGACT
515 CAACTTCAGGGGGTTAAGACTTGCTTTTTCAGTTTGCTTCGCTGCAACCTTAGGGACATAAGACT
*
6091875 TGATACGATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTTATACGAATCCGCTCCATTAC
580 TGATACGATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTTATTCGAAT-CGCTCCATTAC
*
6091940 AACTTC
644 AACTTT
*
6091946 AGGGAGATGGGATTACTGGTTTTAATCTACTCCACTGCAAACTCAGGGATATAAGATTCACCATC
1 AGGGAGATGGGATTACTGGTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATC
* * * * *
6092011 TTTAGTCTGCCCACTTCAACTTCAGGGAGATAAGACTTACTTTCTCAGTCTGCGCCGCTGCAACC
66 TTCAGTCTGCCCACTTCAACTTTAGGGAGATAAGACATGCTTTCTCAGTCTGCTCCGCTGCAACC
* *
6092076 TCAGGGAGATAAGACCTGATGCGATGTACTCTACTACAACTTCAGAGAGATAAGATCTATTATTT
131 TCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTT
6092141 G
196 G
6092142 NNNNNNNNNN
Statistics
Matches: 1290, Mismatches: 177, Indels: 66
0.84 0.12 0.04
Matches are distributed among these distances:
650 4 0.00
651 198 0.15
652 888 0.69
653 196 0.15
654 4 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (649 bp):
AGGGAGATGGGATTACTGGTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATC
TTCAGTCTGCCCACTTCAACTTTAGGGAGATAAGACATGCTTTCTCAGTCTGCTCCGCTGCAACC
TCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTT
GAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTCGTTTTAATCTACTCACTGCAAACTC
AGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCTTCT
TCGGTCTGCTCCGCTGTAACCTTAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCA
GAGAGATATGATCTGTTATTTGAATCTGCTCCACTACAACTTCAGGGATATGAGATTACTACTTT
AATCTACTCCACTGCAAACTCAGGGAGATAAGATTAGCCATATTCAATCTGCCCCATTTCAACTT
CAGGGGGTTAAGACTTGCTTTTTCAGTTTGCTTCGCTGCAACCTTAGGGACATAAGACTTGATAC
GATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTTATTCGAATCGCTCCATTACAACTTT
Found at i:6092025 original size:44 final size:44
Alignment explanation
Indices: 6091977--6092090 Score: 117
Period size: 44 Copynumber: 2.6 Consensus size: 44
6091967 TTAATCTACT
* *
6091977 CCACTGCAAACTCAGGGATATAAGA-TTCACCATCTTTAGTCTGC-
1 CCACTGCAAACTCAGGGAGATAAGACTT-ACCATC-TCAGTCTGCG
* **
6092021 CCACTTC-AACTTCAGGGAGATAAGACTTACTTTCTCAGTCTGCG
1 CCACTGCAAAC-TCAGGGAGATAAGACTTACCATCTCAGTCTGCG
* *
6092065 CCGCTGCAACCTCAGGGAGATAAGAC
1 CCACTGCAAACTCAGGGAGATAAGAC
6092091 CTGATGCGAT
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
43 11 0.19
44 43 0.74
45 4 0.07
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (44 bp):
CCACTGCAAACTCAGGGAGATAAGACTTACCATCTCAGTCTGCG
Found at i:6092653 original size:217 final size:217
Alignment explanation
Indices: 6092278--6093741 Score: 1732
Period size: 217 Copynumber: 6.7 Consensus size: 217
6092268 CGCTGTACCC
* * * * *
6092278 TCAGGGAGACGGGATTACTGGCTTTAATCTACTCCACTGTAAAC-CTAAGGAGATAAGACTTGCC
1 TCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTC-AGGGAGATAAGATTTACC
* * * *
6092342 ATCTTCGATCTGCTCCGCTACTGCTTAGGGAGGTAAGATATGCTTCTTCGGTCTACTCCGCTGCA
65 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCTTCTTCGGTCTGCTCCGCTGCA
* * *
6092407 ACCTCAGGGAGACAAGATGTGATGCGATCTACTGTACTGCAACTTCAGAGAGATAAGATCTGTTA
130 ACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTA
* *
6092472 TTTGAATCCACTCTACTGCAACT
195 TTTGAATCCGCTCCACTGCAACT
* * * *
6092495 TCAGGGAGATGGGATTACTCGTTTTAATCTACTCCACTCCAAACTCAGGGAGATAAGATTTGCCA
1 TCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCA
* *
6092560 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTACTTCTTTGGTCTGCTCCGCTGCAA
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCTTCTTCGGTCTGCTCCGCTGCAA
* * *
6092625 CCTTAGGGAGATAAGACGTGATGCGATCTACTCTACTACAACTTCAGAGAGATATGATCTGTTAT
131 CCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTAT
* * * *
6092690 TTAAATCTGCTCCTCTACAACT
196 TTGAATCCGCTCCACTGCAACT
* * * * * * *
6092712 TCAGGGAGATGAGATTACTAGCTTTAATCTACTCCATTTCAAACTAATGGAGATAAGATTCACCA
1 TCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCA
** * * * * ** * * ** * * * *
6092777 GATTCAATCTGCCCCATTTCAACTTCAGGGGGTTAAGACCTGCTTTTTCAGTCTGCTTCACTGCA
66 TCTTCGATCTGCTCCACTACTGCTT-AGGGAGATAAGATTTGCTTCTTCGGTCTGCTCCGCTGCA
* * * * * *
6092842 ACCTTAGCGATATAAGACTTGATACGATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTTA
130 ACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTA
* * *
6092907 TTCGAATCCGCTCCATTACAACT
195 TTTGAATCCGCTCCACTGCAACT
* * * * *
6092930 TCAGGGAGATGGGATTGCTGGCTTTAATCTTCTCCACAGCAAACTCAGGGAGATATGATTCACCA
1 TCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCA
* * ** * * * *
6092995 TCTTC-AGTCTG-GCCACTTCAACTTTAGGGGGATAAGACCTT-CTT-TCTCAGTCTGCCCCGCT
66 TCTTCGA-TCTGCTCCACTACTGC-TTAGGGAGATAAGA-TTTGCTTCT-TCGGTCTGCTCCGCT
* * * * *
6093056 GCAACCTCAGGGAGATAAGACCTGATGCGATGTACTCTACTGCAACTTCAAAGAGATAGGATCTA
127 GCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTG
* *
6093121 TTATTTGAATCTGCTCCATTGCAACT
192 TTATTTGAATCCGCTCCACTGCAACT
* * * * * * *
6093147 TCGGGGAGTTGGGATTACTGGCTTTAATTTACCCCACTACAAACTCAGGGAGATAAGATTCACTA
1 TCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCA
* * * * *
6093212 TCTTC-AGTCTGCCCCACTTCAGCTTCATGGG-GATAAGACTTT-CTT-TCTCAGTCTGCTCTGC
66 TCTTCGA-TCTGCTCCACTACTGCTT-A-GGGAGATAAGA-TTTGCTTCT-TCGGTCTGCTCCGC
* * *
6093273 TGCAACATCAGGAAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCA-AGGAGATAAGATC
126 TGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGA-GAGATAAGATC
6093337 TGTTATTTGAATCCGCTCCACTGCAACT
190 TGTTATTTGAATCCGCTCCACTGCAACT
* * * *
6093365 TCAGGGAGATGGGATTACTTGTTTTAAACTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCA
1 TCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCA
*
6093430 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATATGCTTCTTCGGTCTGCTCCGCTGCAA
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCTTCTTCGGTCTGCTCCGCTGCAA
6093495 CCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTAT
131 CCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTAT
*
6093560 TTGAATACGCTCCACTGCAACTT
196 TTGAATCCGCTCCACTGCAAC-T
* * * *
6093583 TTAGGGAGATGGGATTACTCGTTTTAATCTACTCCACTGCAAACTCA-GGAGATAAGACTTACCA
1 TCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCA
* * * *
6093647 TCTTCGATCTGCTCCACTATTGCTTAGAGAGATAAGATCTGCTTCTTTCGGTCTGCT-CGCTGTA
66 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCTTC-TTCGGTCTGCTCCGCTGCA
6093711 ACCT-A-GGAGATAAGACGTGATGCGATCTACT
130 ACCTCAGGGAGATAAGACGTGATGCGATCTACT
6093742 NNNNNNNNNN
Statistics
Matches: 1084, Mismatches: 146, Indels: 36
0.86 0.12 0.03
Matches are distributed among these distances:
215 26 0.02
216 7 0.01
217 621 0.57
218 426 0.39
219 4 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (217 bp):
TCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCA
TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCTTCTTCGGTCTGCTCCGCTGCAA
CCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTAT
TTGAATCCGCTCCACTGCAACT
Found at i:6093225 original size:435 final size:433
Alignment explanation
Indices: 6092278--6093741 Score: 1623
Period size: 435 Copynumber: 3.4 Consensus size: 433
6092268 CGCTGTACCC
* * ** * *
6092278 TCAGGGAGACGGGATTACTGGCTTTAATCTACTCCACTGTAAACCTAAGGAGATAAGACTT-GCC
1 TCAGGGAGATGGGATTACTAGCTTTAATCTACTCCACTACAAA-CTCAGGAGATAAGA-TTCACC
** * * * * ** ** * * **
6092342 ATCTTCGATCTGCTCCGCTACTGCTT-AGGGAGG-TAAGATATGC-TTCTTCGGTCTACTCCGCT
64 AGATTCAATCTGCCCCACTTCAACTTCAGGG-GGATAAGACCTGCTTTC-TCAGTCTGCTCTACT
* * * ** *
6092404 GCAACCTCAGGGAGACAAGATGTGATGCGATCTACTGTACTGCAACTTCAGAGAGATAAGATCTG
127 GCAACATCAGGAAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTG
* * *
6092469 TTATTTGAATCCACTCTACTGCAACTTCAGGGAGATGGGATTACTCGTTTTAATCTACTCCACTC
192 TTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTCGTTTTAATCTACTCCACTG
*
6092534 CAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATT
257 CAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAAT
* * *
6092599 TACTTCTTTGGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACGTGATGCGATCTACTCTACTAC
322 T-CTTCTTCGGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGC
* * *
6092664 AACTTCAGAGAGATATGATCTGTTATTTAAATCTGCTCC-TCTACAACT
386 AACTTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCAT-TGCAACT
* * * *
6092712 TCAGGGAGATGAGATTACTAGCTTTAATCTACTCCATTTCAAACTAATGGAGATAAGATTCACCA
1 TCAGGGAGATGGGATTACTAGCTTTAATCTACTCCACTACAAACTCA-GGAGATAAGATTCACCA
* * *
6092777 GATTCAATCTGCCCCATTTCAACTTCAGGGGGTTAAGACCTGCTTTTTCAGTCTGCT-TCACTGC
65 GATTCAATCTGCCCCACTTCAACTTCAGGGGGATAAGACCTGCTTTCTCAGTCTGCTCT-ACTGC
* * * * * *
6092841 AACCTTAGCG-ATATAAGACTTGATACGATCTACTCTACTACAACTTCAGAGAGATAAGATCTGT
129 AACATCAG-GAAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
* * * * * * * *
6092905 TATTCGAATCCGCTCCATTACAACTTCAGGGAGATGGGATTGCTGGCTTTAATCTTCTCCACAGC
193 TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTCGTTTTAATCTACTCCACTGC
* ** * * ** *
6092970 AAACTCAGGGAGATATGATTCACCATCTTC-AGTCTG-GCCACTTCAACTTTAGGGGGATAAGAC
258 AAACTCAGGGAGATAAGATTTGCCATCTTCGA-TCTGCTCCACTACTGC-TTAGGGAGATAAGA-
* * * * *
6093033 CTTCTT-TCTCAGTCTGCCCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATGTACTCTACT
320 ATTCTTCT-TCGGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACT
* * *
6093097 GCAACTTCAAAGAGATAGGATCTATTATTTGAATCTGCTCCATTGCAACT
384 GCAACTTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCATTGCAACT
* * * * * *
6093147 TCGGGGAGTTGGGATTACTGGCTTTAATTTACCCCACTACAAACTCAGGGAGATAAGATTCACTA
1 TCAGGGAGATGGGATTACTAGCTTTAATCTACTCCACTACAAACTCA-GGAGATAAGATTCACCA
** * * * * * *
6093212 TCTTCAGTCTGCCCCACTTCAGCTTCATGGGGATAAGACTTTCTTTCTCAGTCTGCTCTGCTGCA
65 GATTCAATCTGCCCCACTTCAACTTCAGGGGGATAAGACCTGCTTTCTCAGTCTGCTCTACTGCA
6093277 ACATCAGGAAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCA-AGGAGATAAGATCTGTT
130 ACATCAGGAAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGA-GAGATAAGATCTGTT
* *
6093341 ATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTTGTTTTAAACTACTCCACTGCA
194 ATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTCGTTTTAATCTACTCCACTGCA
*
6093406 AACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATATG
259 AACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA-ATT
6093471 CTTCTTCGGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAA
323 CTTCTTCGGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAA
*
6093536 CTTCAGAGAGATAAGATCTGTTATTTGAATAC-GCTCCACTGCAACTT
388 CTTCAGAGAGATAAGATCTGTTATTTGAAT-CTGCTCCATTGCAAC-T
* * * *
6093583 TTAGGGAGATGGGATTACTCGTTTTAATCTACTCCACTGCAAACTCAGGAGATAAGACTT-ACCA
1 TCAGGGAGATGGGATTACTAGCTTTAATCTACTCCACTACAAACTCAGGAGATAAGA-TTCACCA
** * * ** * * * * * *
6093647 TCTTCGATCTGCTCCACTAT-TGCTT-AGAGAGATAAGATCTGCTTCTTTCGGTCTGCTC-GCTG
65 GATTCAATCTGCCCCACT-TCAACTTCAGGGGGATAAGACCTGCTT-TCTCAGTCTGCTCTACTG
* * *
6093709 TAACCT-AGG-AGATAAGACGTGATGCGATCTACT
128 CAACATCAGGAAGATAAGACCTGATGCGATCTACT
6093742 NNNNNNNNNN
Statistics
Matches: 864, Mismatches: 143, Indels: 48
0.82 0.14 0.05
Matches are distributed among these distances:
432 23 0.03
433 9 0.01
434 100 0.12
435 672 0.78
436 60 0.07
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (433 bp):
TCAGGGAGATGGGATTACTAGCTTTAATCTACTCCACTACAAACTCAGGAGATAAGATTCACCAG
ATTCAATCTGCCCCACTTCAACTTCAGGGGGATAAGACCTGCTTTCTCAGTCTGCTCTACTGCAA
CATCAGGAAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTAT
TTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTCGTTTTAATCTACTCCACTGCAAA
CTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAATTCTT
CTTCGGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAACTT
CAGAGAGATAAGATCTGTTATTTGAATCTGCTCCATTGCAACT
Found at i:6093363 original size:44 final size:43
Alignment explanation
Indices: 6093263--6093592 Score: 183
Period size: 44 Copynumber: 7.6 Consensus size: 43
6093253 TCTTTCTCAG
** * * * **
6093263 TCTGCTCTGCTGCAACATCAGGAAGATAAGACCTG--ATGCGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTTATTTGA
* * *
6093304 TCTACTCTACTGCAACTTCAAGGAGATAAGATCTGTTATTTGAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTTATTTG-A
* ** *
6093348 TCCGCTCCACTGCAACTTCAGGGAGATGGGATTACT-TGT-TTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-T-CTGT-TATTTGA
* * * **
6093392 ACTACTCCACTGCAAAC-TCAGGGAGATAAGATTTGCCATCTTCGA
1 TCTGCTCCACTGC-AACTTCAGGGAGATAAGATCTGTTAT-TT-GA
* ** * * * *
6093437 TCTGCTCCACTACTGCTT-AGGGAGATAAGATATGCTTCTTCGG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTG-TTATTTGA
* * * **
6093480 TCTGCTCCGCTGCAACCTCAGGGAGATAAGA-C-GTGATGCGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTTATTTGA
* * *
6093521 TCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTTATTTG-A
*
6093565 TAC-GCTCCACTGCAACTTTTAGGGAGAT
1 T-CTGCTCCACTGCAAC-TTCAGGGAGAT
6093593 GGGATTACTC
Statistics
Matches: 213, Mismatches: 57, Indels: 34
0.70 0.19 0.11
Matches are distributed among these distances:
41 59 0.28
42 3 0.01
43 24 0.11
44 93 0.44
45 31 0.15
46 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.28
Consensus pattern (43 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGTTATTTGA
Found at i:6094742 original size:217 final size:215
Alignment explanation
Indices: 6094103--6095153 Score: 1183
Period size: 217 Copynumber: 4.8 Consensus size: 215
6094093 NNNNNNNNNN
* * * **
6094103 TTCAGGGAGATGGGATTACTTGTTTTAATCTACTCCACTGTAAACTTAGGGAGATAAGATTTGCC
1 TTCAGGGAGATGGGATTACTGGTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACC
* * ** * * ** * * *
6094168 ATCTTCGGTCTGCTCCACTACTGCTTAGGGAGATAGGATCTCCTTCTTCGGTCTGCTCCGCTGTA
66 ATCTTCAGTCTGC-CCACTTCAACTTAGGGGGATAAGA-CTTGTTTTTCAGTCTGCTCCGCTGCA
* * *
6094233 ACC-CTAGGGAGATAAGACGTGATGCGATCTACTCTACTGGAACTTCAGAGAGATATGATCTGTT
129 ACCTC-AGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTT
*
6094297 ATTTGAATCTGCTCCACTACAAC
193 ATTTGAATCCGCTCCACTACAAC
* * * * * *
6094320 TTCAGGGATATGAGATTACTAGCTTTAATCTATTCCACTGCAAACTCAGGGAGATAAGATTCAGC
1 TTCAGGGAGATGGGATTACTGGTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACC
* * * * * * * *
6094385 ATATTCAATCTGTCCCATTTCAACTTCAGGGGGTTAAGACTTGCTTTTTCAGTTTGCTTCGTTTC
66 ATCTTCAGTCTG-CCCACTTCAACTT-AGGGGGATAAGACTTG-TTTTTCAGTCTGCTCCGCTGC
* * * * *
6094450 AACCTTAGGGACATAAGACTTGATACGATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTT
128 AACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTT
* *
6094515 ATTCGAATCCGCTCCATTACAAC
193 ATTTGAATCCGCTCCACTACAAC
* *
6094538 TTCAGGGAGATGGGACTACTGGTTTTAATCTACTCCACTGCAAACTCAGGAAGATAAGATTCACC
1 TTCAGGGAGATGGGATTACTGGTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACC
*
6094603 ATCTTTAGTCTGCCCACTTCAACTTCAGGGGGATAAGACTTGTTTTCTCAGTCTGCTCCGCTGCA
66 ATCTTCAGTCTGCCCACTTCAACTT-AGGGGGATAAGACTTGTTTT-TCAGTCTGCTCCGCTGCA
* * * *
6094668 ACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAGGGTCTATTA
129 ACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTA
*
6094733 TTTGAATCCGCTCCACTGCAAC
194 TTTGAATCCGCTCCACTACAAC
* * * * * * **
6094755 TTTAGGGAGATGTGATTACTCGTTTTAATCCACTCCACTGCAAACTTAGGTAGATAAGATTTGCC
1 TTCAGGGAGATGGGATTACTGGTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACC
* * ** * *
6094820 ATCTTC-GATCTACTCCACTACTGCTTAGGGAGATAAGA-TCTGCTTTTTCAGTCTGCTCTGCTG
66 ATCTTCAG-TCTGC-CCACTTCAACTTAGGGGGATAAGACT-TG-TTTTTCAGTCTGCTCCGCTG
* * * *
6094883 TAACCTTAGGGAGATAAGACGTGATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
127 CAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
* * *
6094948 TATTTGAATCTGCTCCATTGCAAC
192 TATTTGAATCCGCTCCACTACAAC
** * *
6094972 TTCAGGGAGATGGGATTACTGGCGTTAATTTACCCCACTGCAAACTCAGGGAGATAAGATTCACC
1 TTCAGGGAGATGGGATTACTGGTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACC
* * * *
6095037 ATCTTCAGTCTACCCTACTTAAACTTTAAGGGGATAAGACTT-TCTTTCTCAGTCTGCTCTGCTG
66 ATCTTCAGTCTGCCC-ACTTCAAC-TTAGGGGGATAAGACTTGT-TTT-TCAGTCTGCTCCGCTG
* * * * *
6095101 CAACATCAGAGAGATAAAACCTGTTGTGATCTACTCTACTGCAACTTCAGAGA
127 CAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGA
6095154 NNNNNNNNNN
Statistics
Matches: 700, Mismatches: 119, Indels: 29
0.83 0.14 0.03
Matches are distributed among these distances:
216 9 0.01
217 434 0.62
218 256 0.37
219 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (215 bp):
TTCAGGGAGATGGGATTACTGGTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACC
ATCTTCAGTCTGCCCACTTCAACTTAGGGGGATAAGACTTGTTTTTCAGTCTGCTCCGCTGCAAC
CTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATT
TGAATCCGCTCCACTACAAC
Found at i:6096721 original size:217 final size:218
Alignment explanation
Indices: 6096078--6098772 Score: 3046
Period size: 217 Copynumber: 12.4 Consensus size: 218
6096068 NNAGATGGGG
* * * *
6096078 TTACTGGTTTTAATCTACTCCACTGCAAACTCAGGGAGGTAAGATTCAG-CATCTT-TAGTCTGC
1 TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATT-TGCCATCTTCGA-TCTGC
* ** * *
6096141 -CCACTTCAACTTCAAGGAGATAAGACTTGCTTTCTCTGTCTGCTCCGCTGCAACCTC-GAGGAG
64 TCCACTACTGCTTCAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAG-GGAG
* * *
6096204 ATAAGACCTGATGCGATGTACTCTACTACAACTTCAGAGAGATAGGATCTATTATTTGAATCCGC
128 ATAAGACTTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGC
6096269 TCCACTGCAACTTTAGGGAGAT-GAGA
193 TCCACTGCAACTTTAGGGAGATGGA-A
* * *
6096295 TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTTCCATATTCGATCTACTC
1 TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTC
* * * * * **
6096360 CACTACTGCTTAAAGGG-GATAACACTTGCTTTCTCATTCTGCTCCGCTGTAACCTTAGAAAGAT
66 CACTACTGCTT-CAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGAT
* * * * *
6096424 AAGA-TCTAATTCGATCCACTCTACCGCAACTTTAGAGAGATAGGATCTATTATTTGAATCCGCT
130 AAGACT-TGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCT
* *
6096488 CCACTACAACTTTAGGGAGATGTAA
194 CCACTGCAACTTTAGGGAGATGGAA
* * * *
6096513 TTACTCGTTTTAATGC-ACTCAACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCAATCTGCT
1 TTACTGGCTTTAAT-CTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCT
* * * * * *
6096577 CCACTACTGCTT-AGGGAGAAAAGA-TCTGTTTTTTCGGTCTGCTCTGCTGTAACCTCAGGGAGA
65 CCACTACTGCTTCAGGGAGATAAGACT-TGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGA
* * *
6096640 TAAGACTTGATGTGATCTACTCTACTGCAACTTCAGAGAGATTGGATCTATTATTTGAATCTGCT
129 TAAGACTTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCT
* * *
6096705 CCACTGCAAATTTAGGGAGACGGGA
194 CCACTGCAACTTTAGGGAGATGGAA
*
6096730 TTACTGGCTTTAATCTACTCCACTGCAAACAT-AGGGTA-ATAAGATTTGCCATTTTCGATCTGC
1 TTACTGGCTTTAATCTACTCCACTGCAAAC-TCAGGG-AGATAAGATTTGCCATCTTCGATCTGC
* *
6096793 TCCACTACTGCTTCAAGGG-GATAAGACTTGCTTTCTCAGTCTGCTCCGCTACAACCTTAGGGAG
64 TCCACTACTGCTTC-AGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAG
* * * * * * ***
6096857 ATAAGACCTGATGCGATCTACTCTACTGCAACGTCAGAGAGAGAAGACCTGTTATTTGAATCTTT
128 ATAAGACTTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGC
* * *
6096922 TCCTCTACAACTTCAGGGAGAT-GAGA
193 TCCACTGCAACTTTAGGGAGATGGA-A
* * ** * ** *
6096948 TTACTAGCTTTAATCTACTCCACTGCAAACTCAGGAAGATAAGATTCACCATATTTAATCTGCCC
1 TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTC
* * ** * * * * * * *
6097013 CATTTCAACTTCAGGGGGTTAAGACTTGCTTTTTCAGTTTGCTTCGCTGCAACCTTAGGGATATA
66 CACTACTGCTTCAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATA
* * * ** * * *
6097078 AGACTTGATACGATCTTCTCTTCCACAACTTCAGAGAGATAAGATCTGTTATTCGAATCCGCTCC
131 AGACTTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCC
* *
6097143 A-TGACAACTTCAGGGAGATGGGA
196 ACTG-CAACTTTAGGGAGATGGAA
* * * *
6097166 TTACTGGTTTTAATCTACTCCACTGCAAACTCAGGGAGGTAAGATTCAG-CATCTT-TAGTCTGC
1 TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATT-TGCCATCTTCGA-TCTGC
* * ** * *
6097229 -CCAGTTCAACTTCAGGGAGATAAGACTTGCTTTCTCTGTCTGCTCCGCTGCAACCTCAAGGAGA
64 TCCACTACTGCTTCAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGA
* * * * *
6097293 TAAGACCTGATACGATGTACTCTACTACAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCT
129 TAAGACTTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCT
* *
6097358 CCACTGCAATTTTAGAGAGAT-GAGA
194 CCACTGCAACTTTAGGGAGATGGA-A
* * *
6097383 TTACTGGCTTTAATCTGCTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTACTC
1 TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTC
* * * * * * * **
6097448 TACTACTGCTTAAAAGG-GATAACACTTGCTTTCTCATTCTGCTCCGCTGTAACCTTAGAAAGAT
66 CACTACTGCTT-CAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGAT
* * * * *
6097512 AAGA-TCTAATTCGATCCACTCTACTGCAACTTTAGAGAGATAGGATCTATTATTTGAATCCACT
130 AAGACT-TGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCT
* *
6097576 CCATTGCAACTTTAGGGAGATGTAA
194 CCACTGCAACTTTAGGGAGATGGAA
* * * * *
6097601 TTACTCGTTTTAATCCACTCTACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCAATCTGCTC
1 TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTC
* * * * * * * *
6097666 CACTACTGCTT-TGGGAGAAAAGA-TCTGCTTTTTCGGTCTGTTCTGCTGTAACCTTAGGGAGAT
66 CACTACTGCTTCAGGGAGATAAGACT-TGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGAT
* * *
6097729 AAGACTTGATGTGATCTACTCTACTGCAACTTCAGAGAGATTGGATCTATTATTTGAATCTGCTC
130 AAGACTTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTC
* *
6097794 CACTGCAACTTTAGGGAGACGGGA
195 CACTGCAACTTTAGGGAGATGGAA
* * * * *
6097818 TTAACTGGCTTTAATCTAATCCACTGCAAACTTAGGGTGATAAGATTTGCCTTTTTCGATCTGCT
1 TT-ACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCT
* ** *
6097883 CCACTACTGCTTCATGG-GATAAGACTTGCTTTCTCAGTCTGCTCCGCAACAACCTTAGGGAGAT
65 CCACTACTGCTTCAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGAT
* * * * *
6097947 AAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAGGATCTATTATTCGAATTCGTTC
130 AAGACTTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTC
* * *
6098012 CACTGTAACTTTAGGGAGACGGGA
195 CACTGCAACTTTAGGGAGATGGAA
*
6098036 TTACTGGCTTTAATCTACTCCACTGCAAACTCAAGGAGATAAGATTTGCCATCTTCGATCTGCTC
1 TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTC
* * *
6098101 CACTACCGCTT-AGGGAGATAAGA-TCTGC-TTCTCCGGTCTGCCCCGCTGCAACCTCAGGGAGA
66 CACTACTGCTTCAGGGAGATAAGACT-TGCTTTCT-CAGTCTGCTCCGCTGCAACCTCAGGGAGA
* * * * *
6098163 TAAGACGTGATGCGATCTACTCTACGGCAACTTCAGGGAGATAAGATCTGTTATTTGAATCCGCT
129 TAAGACTTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCT
* * *
6098228 CCACTGCAACTTCAGAGAGATGGGA
194 CCACTGCAACTTTAGGGAGATGGAA
*** * * * *
6098253 TTACTCATTTTAATCTACTCCATTACAAACTCAGGGAGATAATATTTTCCATCTTCGATCTGCTC
1 TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTC
* * *
6098318 CACTACTGCTT-AGAGAGATAAGA-TCTGC-TTCTTCGGTCTGCTCCGCTGTAACCTCAGGGAGA
66 CACTACTGCTTCAGGGAGATAAGACT-TGCTTTC-TCAGTCTGCTCCGCTGCAACCTCAGGGAGA
* * * * * * * *
6098380 TAAGACATGGTGCGATCTACTCTACAGCAACTTTAGAGAGATATGATCTGTTATTTGACTCTGCT
129 TAAGACTTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCT
* * *
6098445 CCTCTACAACTTCA-GGAGAT-GAGA
194 CCACTGCAACTTTAGGGAGATGGA-A
* ** *
6098469 TTACTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCGTTAG-TCTGC-
1 TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATC-TTCGATCTGCT
* ** *
6098532 CCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGAT
65 CCACTACTGCTTCAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGAT
* * *
6098597 AAGACTTGATGCGATCTAGTCTACTGCTACTTCAGAGAGATTGGATCTATTATTTGAATCCGCTC
130 AAGACTTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTC
* *
6098662 CACTGCAACTTCAGGGAGATGGGA
195 CACTGCAACTTTAGGGAGATGGAA
*
6098686 TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCTC
1 TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTC
*
6098751 CACTACTGCTTCAGGGGGATAA
66 CACTACTGCTTCAGGGAGATAA
6098773 NNNNNNNNNN
Statistics
Matches: 2091, Mismatches: 335, Indels: 103
0.83 0.13 0.04
Matches are distributed among these distances:
215 10 0.00
216 185 0.09
217 957 0.46
218 920 0.44
219 19 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (218 bp):
TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTC
CACTACTGCTTCAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATA
AGACTTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCC
ACTGCAACTTTAGGGAGATGGAA
Found at i:6096898 original size:435 final size:436
Alignment explanation
Indices: 6096078--6098772 Score: 3085
Period size: 435 Copynumber: 6.2 Consensus size: 436
6096068 NNAGATGGGG
* * * * *
6096078 TTACTGGTTTTAATCTACTCCACTGCAAACTCAGGGAGGTAAGATTCAG-CATCTT-TAGTCTGC
1 TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATT-TGCCATATTCGA-TCTGC
* ** * *
6096141 -CCACTTCAACTTCAAGGAGATAAGACTTGCTTTCTCTGTCTGCTCCGCTGCAACCTC-GAGGAG
64 TCCACTACTGCTTCAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAG-GGAG
* * *
6096204 ATAAGACCTGATGCGATGTACTCTACTACAACTTCAGAGAGATAGGATCTATTATTTGAATCCGC
128 ATAAGACTTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGC
*
6096269 TCCACTGCAACTTTAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGA
193 TCCACTGCAACTTTAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGA
* * * * * *
6096334 TAAGATTTTCCATATTCGATCTACTCCACTACTGCTTAAAGGG-GATAACACTTGCTTTCTCATT
258 TAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTT-CAGGGAGATAAGACTTGCTTTCTCAGT
* * ** * * * * * *
6096398 CTGCTCCGCTGTAACCTTAGAAAGATAAGATCTAATTCGATCCACTCTACCGCAACTTTAGAGAG
322 CTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAG
* * * *
6096463 ATAGGATCTATTATTTGAATCCGCTCCACTACAACTTTAGGGAGATGTAA
387 ATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGAA
* * * * *
6096513 TTACTCGTTTTAATGC-ACTCAACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCAATCTGCT
1 TTACTGGCTTTAAT-CTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCT
* * * * * *
6096577 CCACTACTGCTT-AGGGAGAAAAGA-TCTGTTTTTTCGGTCTGCTCTGCTGTAACCTCAGGGAGA
65 CCACTACTGCTTCAGGGAGATAAGACT-TGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGA
* * *
6096640 TAAGACTTGATGTGATCTACTCTACTGCAACTTCAGAGAGATTGGATCTATTATTTGAATCTGCT
129 TAAGACTTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCT
* *
6096705 CCACTGCAAATTTAGGGAGACGGGATTACTGGCTTTAATCTACTCCACTGCAAACAT-AGGGTA-
194 CCACTGCAACTTTAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAAC-TCAGGG-AG
*
6096768 ATAAGATTTGCCATTTTCGATCTGCTCCACTACTGCTTCAAGGG-GATAAGACTTGCTTTCTCAG
257 ATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTC-AGGGAGATAAGACTTGCTTTCTCAG
* * *
6096832 TCTGCTCCGCTACAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACGTCAGAGA
321 TCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGA
* * * *** * *
6096897 GAGAAGACCTGTTATTTGAATCTTTTCCTCTACAACTTCAGGGAGAT-GAGA
386 GATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGA-A
* * ** ** *
6096948 TTACTAGCTTTAATCTACTCCACTGCAAACTCAGGAAGATAAGATTCACCATATTTAATCTGCCC
1 TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCTC
* * ** * * * * * * *
6097013 CATTTCAACTTCAGGGGGTTAAGACTTGCTTTTTCAGTTTGCTTCGCTGCAACCTTAGGGATATA
66 CACTACTGCTTCAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATA
* * * ** * * *
6097078 AGACTTGATACGATCTTCTCTTCCACAACTTCAGAGAGATAAGATCTGTTATTCGAATCCGCTCC
131 AGACTTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCC
* * *
6097143 A-TGACAACTTCAGGGAGATGGGATTACTGGTTTTAATCTACTCCACTGCAAACTCAGGGAGGTA
196 ACTG-CAACTTTAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATA
* * * * ** *
6097207 AGATTCAG-CATCTT-TAGTCTGC-CCAGTTCAACTTCAGGGAGATAAGACTTGCTTTCTCTGTC
260 AGATT-TGCCATCTTCGA-TCTGCTCCACTACTGCTTCAGGGAGATAAGACTTGCTTTCTCAGTC
* * * *
6097269 TGCTCCGCTGCAACCTCAAGGAGATAAGACCTGATACGATGTACTCTACTACAACTTCAGAGAGA
323 TGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGA
* * *
6097334 TAAGATCTATTATTTGAATCCGCTCCACTGCAATTTTAGAGAGAT-GAGA
388 TAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGA-A
* *
6097383 TTACTGGCTTTAATCTGCTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTACTC
1 TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCTC
* * * * * * * **
6097448 TACTACTGCTTAAAAGG-GATAACACTTGCTTTCTCATTCTGCTCCGCTGTAACCTTAGAAAGAT
66 CACTACTGCTT-CAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGAT
* * * * *
6097512 AAGA-TCTAATTCGATCCACTCTACTGCAACTTTAGAGAGATAGGATCTATTATTTGAATCCACT
130 AAGACT-TGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCT
* ** * * * *
6097576 CCATTGCAACTTTAGGGAGATGTAATTACTCGTTTTAATCCACTCTACTGCAAACTCAGGGAGAT
194 CCACTGCAACTTTAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGAT
* * * * *
6097641 AAGATTTGCCATCTTCAATCTGCTCCACTACTGCTT-TGGGAGAAAAGA-TCTGCTTTTTCGGTC
259 AAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTCAGGGAGATAAGACT-TGCTTTCTCAGTC
* * * * * *
6097704 TGTTCTGCTGTAACCTTAGGGAGATAAGACTTGATGTGATCTACTCTACTGCAACTTCAGAGAGA
323 TGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGA
** * * * *
6097769 TTGGATCTATTATTTGAATCTGCTCCACTGCAACTTTAGGGAGACGGGA
388 TAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGAA
* * * * *
6097818 TTAACTGGCTTTAATCTAATCCACTGCAAACTTAGGGTGATAAGATTTGCCTTTTTCGATCTGCT
1 TT-ACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCT
* ** *
6097883 CCACTACTGCTTCATGG-GATAAGACTTGCTTTCTCAGTCTGCTCCGCAACAACCTTAGGGAGAT
65 CCACTACTGCTTCAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGAT
* * * * *
6097947 AAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAGGATCTATTATTCGAATTCGTTC
130 AAGACTTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTC
* * *
6098012 CACTGTAACTTTAGGGAGACGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAAGGAGATA
195 CACTGCAACTTTAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATA
* *
6098077 AGATTTGCCATCTTCGATCTGCTCCACTACCGCTT-AGGGAGATAAGA-TCTGC-TTCTCCGGTC
260 AGATTTGCCATCTTCGATCTGCTCCACTACTGCTTCAGGGAGATAAGACT-TGCTTTCT-CAGTC
* * * *
6098139 TGCCCCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACGGCAACTTCAGGGAGA
323 TGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGA
* * *
6098204 TAAGATCTGTTATTTGAATCCGCTCCACTGCAACTTCAGAGAGATGGGA
388 TAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGAA
*** * * * * *
6098253 TTACTCATTTTAATCTACTCCATTACAAACTCAGGGAGATAATATTTTCCATCTTCGATCTGCTC
1 TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCTC
* * *
6098318 CACTACTGCTT-AGAGAGATAAGA-TCTGC-TTCTTCGGTCTGCTCCGCTGTAACCTCAGGGAGA
66 CACTACTGCTTCAGGGAGATAAGACT-TGCTTTC-TCAGTCTGCTCCGCTGCAACCTCAGGGAGA
* * * * * * * *
6098380 TAAGACATGGTGCGATCTACTCTACAGCAACTTTAGAGAGATATGATCTGTTATTTGACTCTGCT
129 TAAGACTTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCT
* * * * *
6098445 CCTCTACAACTTCA-GGAGATGAGATTACTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGAT
194 CCACTGCAACTTTAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGAT
** * * ** *
6098509 AAGATTCACCATCGTTAG-TCTGC-CCACTTCAACTTCAGGGGGATAAGACTTGCTTTCTCAGTC
259 AAGATTTGCCATC-TTCGATCTGCTCCACTACTGCTTCAGGGAGATAAGACTTGCTTTCTCAGTC
* * *
6098572 TGCTCCGCTGCAACCTCAGGGAGATAAGACTTGATGCGATCTAGTCTACTGCTACTTCAGAGAGA
323 TGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGA
** *
6098637 TTGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGA
388 TAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGAA
6098686 TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCTC
1 TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCTC
*
6098751 CACTACTGCTTCAGGGGGATAA
66 CACTACTGCTTCAGGGAGATAA
6098773 NNNNNNNNNN
Statistics
Matches: 1908, Mismatches: 314, Indels: 77
0.83 0.14 0.03
Matches are distributed among these distances:
432 9 0.00
433 258 0.14
434 190 0.10
435 1193 0.63
436 256 0.13
437 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (436 bp):
TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCTC
CACTACTGCTTCAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATA
AGACTTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCC
ACTGCAACTTTAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAA
GATTTGCCATCTTCGATCTGCTCCACTACTGCTTCAGGGAGATAAGACTTGCTTTCTCAGTCTGC
TCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAA
GATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGAA
Found at i:6097395 original size:653 final size:653
Alignment explanation
Indices: 6096078--6098772 Score: 3232
Period size: 653 Copynumber: 4.1 Consensus size: 653
6096068 NNAGATGGGG
* * * * *
6096078 TTACTGGTTTTAATCTACTCCACTGCAAACTCAGGGAGGTAAGATTCAG-CATCTT-TAGTCTGC
1 TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATT-TGCCATATTCGA-TCTGC
* ** * * *
6096141 -CCACTTCAACTTCAAGGAGATAAGACTTGCTTTCTCTGTCTGCTCCGCTGCAACC-TCGAGGAG
64 TCCACTACTGCTTCAAGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTTAG-GGAG
* * *
6096204 ATAAGACCTGATGCGATGTACTCTACTACAACTTCAGAGAGATAGGATCTATTATTTGAATCCGC
128 ATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGC
* *
6096269 TCCACTGCAACTTTAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGA
193 TCCACTGCAACTTCAGGGAGATGAGATTACTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGA
* * * * *
6096334 TAAGATTTTCCATATTCGATCTACTCCACTACTGCTTAAAGGG-GATAACA-CTTGCTTTCTCAT
258 TAAGATTTTCCATATTCAATCTGCTCCACTACTGCTT--AGGGAGATAAGATC-TGCTTTTTCAG
** * * * * *
6096397 TCTGCTCCGCTGTAACCTTAGAAAGATAAGA-TCTAATTCGATCCACTCTACCGCAACTTTAGAG
320 TCTGCTCCGCTGTAACCTTAGGGAGATAAGACT-TGATGCGATCTACTCTACCACAACTTCAGAG
* ** * *
6096461 AGATAGGATCTATTATTTGAATCCGCTCCACT-ACAACTTTAGGGAGATGTAATTACTCGTTTTA
384 AGATAGGATCTATTATTTGAATCCGCTCCACTGACAACTTCAGGGAGATGGGATTACTGGCTTTA
* * * * **
6096525 ATGC-ACTCAACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCAATCTGCTCCACTACTGCTT
449 AT-CTACTCCACTGCAAACTCAGGGAGATAAGATTAG-CATCTTTAGTCTGCTCCACTACAACTT
* * * * * * *
6096589 -AGGGAGAAAAGA-TCTGTTTTTTCGGTCTGCTCTGCTGTAACCTCAGGGAGATAAGACTTGATG
512 CAGGGAGATAAGACT-TGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATG
* * * *
6096652 TGATCTACTCTACTGCAACTTCAGAGAGATTGGATCTATTATTTGAATCTGCTCCACTGCAAATT
576 CGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTT
6096717 TAGGGAGACGGGA
641 TAGGGAGACGGGA
*
6096730 TTACTGGCTTTAATCTACTCCACTGCAAACAT-AGGGTA-ATAAGATTTGCCATTTTCGATCTGC
1 TTACTGGCTTTAATCTACTCCACTGCAAAC-TCAGGG-AGATAAGATTTGCCATATTCGATCTGC
*
6096793 TCCACTACTGCTTCAAGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTACAACCTTAGGGAGA
64 TCCACTACTGCTTCAAGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGA
* * * * ***
6096858 TAAGACCTGATGCGATCTACTCTACTGCAACGTCAGAGAGAGAAGACCTGTTATTTGAATCTTTT
129 TAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCT
* * *
6096923 CCTCTACAACTTCAGGGAGATGAGATTACTAGCTTTAATCTACTCCACTGCAAACTCAGGAAGAT
194 CCACTGCAACTTCAGGGAGATGAGATTACTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGAT
** * * * * ** * * *
6096988 AAGATTCACCATATTTAATCTGCCCCATTTCAACTTCAGGGGGTTAAGA-CTTGCTTTTTCAGTT
259 AAGATTTTCCATATTCAATCTGCTCCACTACTGCTT-AGGGAGATAAGATC-TGCTTTTTCAGTC
* * * * * *
6097052 TGCTTCGCTGCAACCTTAGGGATATAAGACTTGATACGATCTTCTCTTCCACAACTTCAGAGAGA
322 TGCTCCGCTGTAACCTTAGGGAGATAAGACTTGATGCGATCTACTCTACCACAACTTCAGAGAGA
* * * *
6097117 TAAGATCTGTTATTCGAATCCGCTCCA-TGACAACTTCAGGGAGATGGGATTACTGGTTTTAATC
387 TAGGATCTATTATTTGAATCCGCTCCACTGACAACTTCAGGGAGATGGGATTACTGGCTTTAATC
* * *
6097181 TACTCCACTGCAAACTCAGGGAGGTAAGATTCAGCATCTTTAGTCTGC-CCAGTTCAACTTCAGG
452 TACTCCACTGCAAACTCAGGGAGATAAGATT-AGCATCTTTAGTCTGCTCCACTACAACTTCAGG
* * * *
6097245 GAGATAAGACTTGCTTTCTCTGTCTGCTCCGCTGCAACCTCAAGGAGATAAGACCTGATACGATG
516 GAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATC
* * * *
6097310 TACTCTACTACAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCTCCACTGCAATTTTAGAG
581 TACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTTAGGG
* *
6097375 AGATGAGA
646 AGACGGGA
* *
6097383 TTACTGGCTTTAATCTGCTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTACTC
1 TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCTC
* * * * * * **
6097448 TACTACTGCTTAAAAGGGATAACACTTGCTTTCTCATTCTGCTCCGCTGTAACCTTAGAAAGATA
66 CACTACTGCTTCAAGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATA
* * * * * * *
6097513 AGATCTAATTCGATCCACTCTACTGCAACTTTAGAGAGATAGGATCTATTATTTGAATCCACTCC
131 AGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCTCC
* * * * * *
6097578 ATTGCAACTTTAGGGAGATGTA-ATTACTCGTTTTAATCCACTCTACTGCAAACTCAGGGAGATA
196 ACTGCAACTTCAGGGAGATG-AGATTACTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGATA
* * * * * *
6097642 AGATTTGCCATCTTCAATCTGCTCCACTACTGCTTTGGGAGAAAAGATCTGCTTTTTCGGTCTGT
260 AGATTTTCCATATTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCTTTTTCAGTCTGC
* * ** *
6097707 TCTGCTGTAACCTTAGGGAGATAAGACTTGATGTGATCTACTCTACTGCAACTTCAGAGAGATTG
325 TCCGCTGTAACCTTAGGGAGATAAGACTTGATGCGATCTACTCTACCACAACTTCAGAGAGATAG
* * *
6097772 GATCTATTATTTGAATCTGCTCCACTG-CAACTTTAGGGAGACGGGATTAACTGGCTTTAATCTA
390 GATCTATTATTTGAATCCGCTCCACTGACAACTTCAGGGAGATGGGATT-ACTGGCTTTAATCTA
* * * * * * * ** *
6097836 ATCCACTGCAAACTTAGGGTGATAAGATTTGCCTTTTTCGATCTGCTCCACTACTGCTTCATGG-
454 CTCCACTGCAAACTCAGGGAGATAAGATTAGCATCTTTAG-TCTGCTCCACTACAACTTCAGGGA
** *
6097900 GATAAGACTTGCTTTCTCAGTCTGCTCCGCAACAACCTTAGGGAGATAAGACCTGATGCGATCTA
518 GATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTA
* * * * *
6097965 CTCTACTGTAACTTCAGAGAGATAGGATCTATTATTCGAATTCGTTCCACTGTAACTTTAGGGAG
583 CTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTTAGGGAG
6098030 ACGGGA
648 ACGGGA
* *
6098036 TTACTGGCTTTAATCTACTCCACTGCAAACTCAAGGAGATAAGATTTGCCATCTTCGATCTGCTC
1 TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCTC
* * * *
6098101 CACTACCGCTT--AGGGAGATAAGA-TCTGC-TTCTCCGGTCTGCCCCGCTGCAACCTCAGGGAG
66 CACTACTGCTTCAAGGG-GATAAGACT-TGCTTTCT-CAGTCTGCTCCGCTGCAACCTTAGGGAG
* * * *
6098162 ATAAGACGTGATGCGATCTACTCTACGGCAACTTCAGGGAGATAAGATCTGTTATTTGAATCCGC
128 ATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGC
* * * * *
6098227 TCCACTGCAACTTCAGAGAGATGGGATTACTCA-TTTTAATCTACTCCATTACAAACTCAGGGAG
193 TCCACTGCAACTTCAGGGAGATGAGATTACT-AGCTTTAATCTACTCCACTGCAAACTCAGGGAG
* * * * * *
6098291 ATAATATTTTCCATCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGCTTCTTCGGTC
257 ATAAGATTTTCCATATTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCTTTTTCAGTC
* * * *
6098356 TGCTCCGCTGTAACCTCAGGGAGATAAGACATGGTGCGATCTACTCTA-CAGCAACTTTAGAGAG
322 TGCTCCGCTGTAACCTTAGGGAGATAAGACTTGATGCGATCTACTCTACCA-CAACTTCAGAGAG
* * * * * * *
6098420 ATATGATCTGTTATTTGACTCTGCTCCTCT-ACAACTTCA-GGAGATGAGATTACTAGCTTTAAT
386 ATAGGATCTATTATTTGAATCCGCTCCACTGACAACTTCAGGGAGATGGGATTACTGGCTTTAAT
* * *
6098483 CTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCGTTAGTCTGC-CCACTTCAACTTCAG
451 CTACTCCACTGCAAACTCAGGGAGATAAGATT-AGCATCTTTAGTCTGCTCCACTACAACTTCAG
* *
6098547 GGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACTTGATGCGAT
515 GGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGAT
* * * *
6098612 CTAGTCTACTGCTACTTCAGAGAGATTGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGG
580 CTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTTAGG
*
6098677 GAGATGGGA
645 GAGACGGGA
6098686 TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCTC
1 TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCTC
*
6098751 CACTACTGCTTCAGGGGGATAA
66 CACTACTGCTTCAAGGGGATAA
6098773 NNNNNNNNNN
Statistics
Matches: 1731, Mismatches: 280, Indels: 65
0.83 0.13 0.03
Matches are distributed among these distances:
649 13 0.01
650 240 0.14
651 29 0.02
652 471 0.27
653 960 0.55
654 18 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (653 bp):
TTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCTC
CACTACTGCTTCAAGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATA
AGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCTCC
ACTGCAACTTCAGGGAGATGAGATTACTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAA
GATTTTCCATATTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCTTTTTCAGTCTGCT
CCGCTGTAACCTTAGGGAGATAAGACTTGATGCGATCTACTCTACCACAACTTCAGAGAGATAGG
ATCTATTATTTGAATCCGCTCCACTGACAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACT
CCACTGCAAACTCAGGGAGATAAGATTAGCATCTTTAGTCTGCTCCACTACAACTTCAGGGAGAT
AAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTC
TACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTTAGGGAGACG
GGA
Found at i:6097547 original size:41 final size:43
Alignment explanation
Indices: 6097502--6097590 Score: 110
Period size: 44 Copynumber: 2.1 Consensus size: 43
6097492 CGCTGTAACC
*
6097502 TTAGAAAGATAAGATCTA-ATTCG-ATCCACTCTACTGCAACT
1 TTAGAAAGATAAGATCTATATTCGAATCCACTCCACTGCAACT
* * * *
6097543 TTAGAGAGATAGGATCTATTATTTGAATCCACTCCATTGCAACT
1 TTAGAAAGATAAGATCTA-TATTCGAATCCACTCCACTGCAACT
6097587 TTAG
1 TTAG
6097591 GGAGATGTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
41 16 0.40
43 4 0.10
44 20 0.50
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.33
Consensus pattern (43 bp):
TTAGAAAGATAAGATCTATATTCGAATCCACTCCACTGCAACT
Found at i:6097628 original size:44 final size:44
Alignment explanation
Indices: 6097525--6097628 Score: 113
Period size: 44 Copynumber: 2.4 Consensus size: 44
6097515 ATCTAATTCG
* *
6097525 ATCCACTCTACTGCAACTTTAGAGAGATAGGATCTATTATTTGA
1 ATCCACTCTACTGCAACTTTAGAGAGATAGAATCTATCATTTGA
* * * * *
6097569 ATCCACTCCATTGCAACTTTAGGGAGAT-GTAAT-TACTCGTTTTA
1 ATCCACTCTACTGCAACTTTAGAGAGATAG-AATCTA-TCATTTGA
6097613 ATCCACTCTACTGCAA
1 ATCCACTCTACTGCAA
6097629 ACTCAGGGAG
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
43 3 0.06
44 46 0.94
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (44 bp):
ATCCACTCTACTGCAACTTTAGAGAGATAGAATCTATCATTTGA
Found at i:6098514 original size:44 final size:44
Alignment explanation
Indices: 6098451--6098731 Score: 145
Period size: 44 Copynumber: 6.5 Consensus size: 44
6098441 TGCTCCTCTA
*
6098451 CAACTTCA-GGAGATGAGATTACTAGCTTTAATCTACTCCACTG
1 CAACTTCAGGGAGATAAGATTACTAGCTTTAATCTACTCCACTG
* * * * * *
6098494 CAAAC-TCAGGGAGATAAGATTCACCATCGTTAGTCTGC-CCACTT
1 C-AACTTCAGGGAGATAAGATT-ACTAGCTTTAATCTACTCCACTG
* * ** * * * *
6098538 CAACTTCAGGGGGATAAGACTTGCTTTC-TCAGTCTGCTCCGCTG
1 CAACTTCAGGGAGATAAGA-TTACTAGCTTTAATCTACTCCACTG
* * * *
6098582 CAACCTCAGGGAGATAAGACTTGA-T-GC---GATCTAGTCTACTG
1 CAACTTCAGGGAGATAAGA-TT-ACTAGCTTTAATCTACTCCACTG
* * ** * **
6098623 CTACTTCAGAGAGATTGGATCTATTA--TTTGAATCCGCTCCACTG
1 CAACTTCAGGGAGATAAGAT-TACTAGCTTT-AATCTACTCCACTG
** *
6098667 CAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTG
1 CAACTTCAGGGAGATAAGATTACTAGCTTTAATCTACTCCACTG
6098711 CAAAC-TCAGGGAGATAAGATT
1 C-AACTTCAGGGAGATAAGATT
6098732 TGCCATATTC
Statistics
Matches: 178, Mismatches: 43, Indels: 33
0.70 0.17 0.13
Matches are distributed among these distances:
40 2 0.01
41 24 0.13
43 19 0.11
44 114 0.64
45 19 0.11
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.28
Consensus pattern (44 bp):
CAACTTCAGGGAGATAAGATTACTAGCTTTAATCTACTCCACTG
Found at i:6108642 original size:217 final size:218
Alignment explanation
Indices: 6108124--6108787 Score: 800
Period size: 217 Copynumber: 3.1 Consensus size: 218
6108114 NNNNNNCTGT
* * * * *
6108124 TCCGCTGTAACCTCAGAGAGATAAGACGTGATGTGATCTACTCTACTGCAACTTCAGAGAGATAT
1 TCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAA
* * * * *
6108189 GATTTGTTATTTGAATCTC-CTCCACTACAACTTCAGGGATATGAGATTACTAGCTTTAATCTAC
66 GATCTATTATTTGAATC-CGCTCCACTGCAACTTCAGGGAGATGAGATTACTAGATTTAATCTAC
* *
6108253 TCCACTGCAAACTCAGGGAGATAAGATTCACCATATTCAATCTGCTCCATTTCAACTTCAGGGGG
130 TCCACTGCAAACTCAGGGAGATAAGAGTCACCATATTCAATCTGCTCCACTTCAACTTCAGGGGG
* *
6108318 TTAAGACTTGCTTTTTCAGTTTGC
195 ATAAGACTTGCTTTTTCAGTCTGC
* * * * * * *
6108342 TTCGTTGCAACCTTAGGGACATAAGACTTGATACGATCTACTCTACTGCAACTTCAGAGGGATAA
1 TCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAA
* * * * * *
6108407 GATCTGA-TATTCGAATCCGCTCCATTGCAACTTCAGGGAGATGGGACTACTGGTTTTAATCTAC
66 GATCT-ATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTAGATTTAATCTAC
* * *
6108471 TCCACTGCAAACTCAGGGAGATAAGAGTCACCATTTTTAGTCTGC-CCACTTCAACTTCAGGGGG
130 TCCACTGCAAACTCAGGGAGATAAGAGTCACCATATTCAATCTGCTCCACTTCAACTTCAGGGGG
6108535 ATAAGACTTG-TTTTCTCAGTCTGC
195 ATAAGACTTGCTTTT-TCAGTCTGC
*
6108559 TCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAG
1 TCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAA
* * * * *
6108624 GGTCTATTATTTGAATCCGCTCCACTGCAACTTTAGGGAGATGTGATTACTCGATTTAATCCACT
66 GATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTAGATTTAATCTACT
* * * ** * * * * ** *
6108689 CTACTGCAAACTCAGGTAGATAAGATTTGCCATCTTCGATCTACTCCACTACTGCTT-AGGGAGA
131 CCACTGCAAACTCAGGGAGATAAGAGTCACCATATTCAATCTGCTCCACTTCAACTTCAGGGGGA
6108753 TAAGA-TCTGCTTTTTCAGTCTGC
196 TAAGACT-TGCTTTTTCAGTCTGC
* *
6108776 TCTGCTGTAACC
1 TCCGCTGCAACC
6108788 NNNNNNNNNN
Statistics
Matches: 378, Mismatches: 61, Indels: 15
0.83 0.13 0.03
Matches are distributed among these distances:
216 6 0.02
217 213 0.56
218 159 0.42
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (218 bp):
TCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAA
GATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTAGATTTAATCTACT
CCACTGCAAACTCAGGGAGATAAGAGTCACCATATTCAATCTGCTCCACTTCAACTTCAGGGGGA
TAAGACTTGCTTTTTCAGTCTGC
Found at i:6109598 original size:217 final size:217
Alignment explanation
Indices: 6108888--6111639 Score: 2828
Period size: 217 Copynumber: 12.7 Consensus size: 217
6108878 NNNNNNNNNN
** * * *
6108888 AGAGAGATAAGATCTGTTATTTGAATCTACTCCATTGCAACTTCAGGGAGATGGGATTACTGGCG
1 AGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGAAACTTCAGGGAGATGGGATTACTGGCT
* *
6108953 TTAATTTAC-CCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCTACTTA-AA
66 TTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAGTCTGCCC-AC-TACAA
* * * * *
6109016 CTTTAAGGGGATAAGACTTTCTTTCTCAGTCTGCTCTGCTGCAACATTAGGGAGATAAGACCTGA
129 CTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGA
*
6109081 TGTGATCTACTCTACTGCAACTTC
194 TGCGATCTACTCTACTGCAACTTC
* * * * * *
6109105 AGAGAGATAGGATCTGTTATTTGAAACTG--CCTCT-ACAACTTCAGGGAGATGAGATTACTAGC
1 AGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGA-AACTTCAGGGAGATGGGATTACTGGC
* * * ** * * **
6109167 TTTAATCTACTCCACTACAAACTCAGGGAGATAATATTCACCATATCCAATCTGCCCTATTTTAA
65 TTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAGTCTGCCC-ACTACAA
* * * * * * * *
6109232 CTTTAGGGGGTTAAGACTTACTTTTTCAGTTTGCTTCGCTGCAACCTTAGGGATATAAGACTTGA
129 CTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGA
* * *
6109297 TACGATATACTCTACTGCAACTTT
194 TGCGATCTACTCTACTGCAACTTC
* * * *
6109321 AGAGAGAAAAGATCTGTTAATTGAATCCGCTCCA-TTACAACTTCAGGGAGATGGGATTACTGGT
1 AGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGA-AACTTCAGGGAGATGGGATTACTGGC
* *
6109385 TTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAGTCTTCCCACAACAAC
65 TTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAGTCTGCCCACTACAAC
* * * *
6109450 TTCAGGGGGATAAGACTTGCATTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACTTCAT
130 TTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGAT
* * *
6109515 GCGATCTACTTTATTGCTACTTC
195 GCGATCTACTCTACTGCAACTTC
* * * *
6109538 AGAGAGATAAGATCTATTATTTGAATCCACTCCACTGAAACTTCACGGAGATGAGATTACTGGCT
1 AGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGAAACTTCAGGGAGATGGGATTACTGGCT
* ** * * * * **
6109603 TTAATCTATTCCACTGCAAACTCAGGGAGATAAGATTTGCCAT-ATTCGATTTACTCCACTACTG
66 TTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAG-TCTGC-CCACTACAA
* * * *
6109667 CTTCAAGGGGATAAGACTTGCTTTCCCATTCTGCTCCGCTGTAACCTTAGGGAGATAAGACCTGA
129 CTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGA
* * *
6109732 TGCGACCTATTCTACTGCAACTAC
194 TGCGATCTACTCTACTGCAACTTC
* * * * * * * * * *
6109756 AGAGAGATAGGATCTATTATTCGAATCCGCTACACTGCAACTTTAGGGATATGTGATTACTCGAT
1 AGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGAAACTTCAGGGAGATGGGATTACTGGCT
* ** * * * **
6109821 TTAATCCACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATC-TTCGATCTGTTCCACAACTG
66 TTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAG-TCTG-CCCACTACAA
* * * * * * * *
6109885 CTT-AGGGAGATAAGA-TCAGCTTTTTCGGTCTGCTCTGCTGTAACCTTAGAGAGATAAGACGTG
129 CTTCAGGGGGATAAGACT-TGCTTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTG
*
6109948 ATGTGATCTACTCTACTGCAACTTC
193 ATGCGATCTACTCTACTGCAACTTC
* * * * **
6109973 AGAGAGATAAGATCTATTATTTGAATCTGCTCTATTGCTACTTCAGGGAGATGGGATTACTGGCT
1 AGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGAAACTTCAGGGAGATGGGATTACTGGCT
* * * * * *
6110038 TTAATTTACCCCACTACAAACTCAGGAAGATAAGATTCTCCATCTTCAGTCTG-CC-CTACATTA
66 TTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAGTCTGCCCACTACA--A
* * * * * *
6110101 GCTTCAAGAGGATAAGACTTTCTTTTTCAGTCTGCTCCGCTGCAACATCAGGGAGATAAGACCTG
129 -CTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTG
*
6110166 ATGCAATCTACTCTACTGCAACTTC
193 ATGCGATCTACTCTACTGCAACTTC
* * *
6110191 AGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTCGTT
1 AGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGAAACTTCAGGGAGATGGGATTACTGGCT
* * ** * **
6110256 TTAATCTACTCTACTGCAAACTTAGGGAGATAAGATTTGCCATC-TTCGATCTGCTCCACTACTG
66 TTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAG-TCTGC-CCACTACAA
* * * *
6110320 CTT-AGGGGGATAGGA-TCTGC-TTCTTCGGTCTGCTCCGCTGTAA-CTTCAGGGAGATAAGACG
129 CTTCAGGGGGATAAGACT-TGCTTTC-TCAGTCTGCTCCGCTGCAACCTT-AGGGAGATAAGACC
6110381 TGATGCGATCTACTCTACTGCAACTTC
191 TGATGCGATCTACTCTACTGCAACTTC
* * * * * * *
6110408 AGAGAGATATGACCTGTTATTTGAATCTGCTCTACT-ACAACTTCA-GGAGATGAGATTTCTTGC
1 AGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGA-AACTTCAGGGAGATGGGATTACTGGC
* * * * * * * *
6110471 TTTAATCTACTCCCCTGCAAACCACAGAGAGATAAGATTCACCATATTCAATCT-CTCCATTTCA
65 TTTAATCTACTCCACTGCAAA-CTCAGGGAGATAAGATTCACCATCTTTAGTCTGC-CCACTACA
* * * * * * *
6110535 ACTTCAGGGGGTTAAGACTTGCTTTTTCAGTTTGCTTCGTTGCAACCTTAGGGATATAAGACTTG
128 ACTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTG
* *
6110600 ATACGATCTACTCTACTACAACTTC
193 ATGCGATCTACTCTACTGCAACTTC
* * * * *
6110625 AGAGAGATAAGATCTGTTATTCGAATCCACTCCA-TTACAACTTCAGGGAGATGGGACTACTGGT
1 AGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGA-AACTTCAGGGAGATGGGATTACTGGC
* *
6110689 TTTAATCTACTCCACTGCAAACTCAGGAAGATAAGATTCACCATCTTTAGTCTGCCCACTTCAAC
65 TTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAGTCTGCCCACTACAAC
* * *
6110754 TTCAGGGGGATAAGACTTGTTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGGCCTGAT
130 TTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGAT
6110819 GCGATCTACTCTACTGCAACTTC
195 GCGATCTACTCTACTGCAACTTC
* * * * * * ***
6110842 AGAGAGATAGGGTCTATTATTTGAATCCGCTCCACTGCAACTTTAGGGAGATGTGATTACTCATT
1 AGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGAAACTTCAGGGAGATGGGATTACTGGCT
* * * ** * * **
6110907 TTAATCCACTCCACTGCAAACTCAGGTAGATAATATTTGCCATC-TTCGATCTACTCCACTACTG
66 TTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAG-TCTGC-CCACTACAA
* * * * *
6110971 CTT-AGGGAGATAAGA-TCTGCTTTTTCAGTCTGCTCTGCTGTAACCTTAGGGAGATAAGACGTG
129 CTTCAGGGGGATAAGACT-TGCTTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTG
*
6111034 ATGTGATCTACTCTACTGCAACTTC
193 ATGCGATCTACTCTACTGCAACTTC
* * * * *
6111059 AGAGAGATAAGATCTGTTATTTGAATCTGCGCCATTGCAACTTCAGGGAGATGGGATTACTGGCG
1 AGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGAAACTTCAGGGAGATGGGATTACTGGCT
* * *
6111124 TTAATTTACCCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCTACTTA-AA
66 TTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAGTCTGCCC-AC-TACAA
* * * * * * *
6111188 ATTTAAGGGGATAAGACTTTCTTTCTCAGTCTGCTTCGCTGCAACATCAGGGAGATAAGACCTGA
129 CTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGA
*
6111253 TGTGATCTACTCTACTGCAACTTC
194 TGCGATCTACTCTACTGCAACTTC
* * * * * * *
6111277 AGAGAGATAGGATCTGTTATTTGAAACTG-T-C-TTTACAACTTCAGGGAGATGAGATTACTAGC
1 AGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGA-AACTTCAGGGAGATGGGATTACTGGC
* * * * * * * * * *
6111339 TTTAATATACTACACTACAAACACAGGGAGATAATATTCACCATATTCAATCTGCCCTATTTCAA
65 TTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAGTCTGCCC-ACTACAA
* * * * * * * *
6111404 CTTCAGGGGGTTAAGACATACTTTTTCAGTTTGCTTCGCTGCAACCTTAGGGATATAAGACTTGA
129 CTTCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGA
* *
6111469 TACGATCTACTCTACTGCAACTTT
194 TGCGATCTACTCTACTGCAACTTC
* * * * *
6111493 AGAGAGATAAGATCTGTTATTCGAATCCGCTCCA-TTACAGCTTCAGGGAGATGGGATTGCTGGT
1 AGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGA-AACTTCAGGGAGATGGGATTACTGGC
* * * *
6111557 TTTAATATACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAGTCTTCCAACTTCAAC
65 TTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAGTCTGCCCACTACAA-
*
6111622 CTT-AGGGAGATAAGACTT
129 CTTCAGGGGGATAAGACTT
6111640 CATGCGATCT
Statistics
Matches: 2099, Mismatches: 386, Indels: 100
0.81 0.15 0.04
Matches are distributed among these distances:
214 3 0.00
215 41 0.02
216 378 0.18
217 992 0.47
218 677 0.32
219 2 0.00
220 2 0.00
221 4 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (217 bp):
AGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGAAACTTCAGGGAGATGGGATTACTGGCT
TTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAGTCTGCCCACTACAACT
TCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATG
CGATCTACTCTACTGCAACTTC
Found at i:6109834 original size:435 final size:433
Alignment explanation
Indices: 6108888--6111639 Score: 3105
Period size: 435 Copynumber: 6.3 Consensus size: 433
6108878 NNNNNNNNNN
* ** **
6108888 AGAGAGATAAGATCTGTTATTTGAATCTACTCCATTGCAACTTCAGGGAGATGGGATTACTGGCG
1 AGAGAGATAAGATCTGTTATTCGAATCCGCTCCATTGCAACTTCAGGGAGATGGGATTACTGGTT
* *
6108953 TTAATTTAC-CCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCTACTTA-AA
66 TTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAGTCTGCCC-AC-TACAA
* * * * *
6109016 CTTTAAGGGGATAAGACTTTCTTTCTCAGTCTGCTCTGCTGCAACATTAGGGAGATAAGACCTGA
129 C-TTAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGA
* * *
6109081 TGTGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTGTTATTTGAA--ACTGCCTCT-ACAA
193 TGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCACT-CCACTGACAA
*
6109143 CTTCAGGGAGATGAGATTACTAGCTTTAATCTACTCCACTACAAACTCAGGGAGATAATATTCAC
257 CTTCAGGGAGATGAGATTACTAGCTTTAATCTACTCCACTACAAACTCAGGGAGATAAGATTCAC
* ** * * * * *
6109208 CATATCCAATCTGC-CCTA-TTTTAACTTTAGGGGGTTAAGACTTACTTTTTCAGTTTGCTTCGC
322 CATATTCAATCT-CTCC-ACTACT-ACTTCAAGGGGATAAGACTTGCTTTTTCAGTTTGCTCCGC
* * *
6109271 TGCAACCTTAGGGATATAAGACTTGATACGATATACTCTACTGCAACTTT
384 TGCAACCTTAGGGAGATAAGACTTGATACGATCTACTCTACTGCAACTTC
* *
6109321 AGAGAGAAAAGATCTGTTAATT-GAATCCGCTCCATTACAACTTCAGGGAGATGGGATTACTGGT
1 AGAGAGATAAGATCTGTT-ATTCGAATCCGCTCCATTGCAACTTCAGGGAGATGGGATTACTGGT
* *
6109385 TTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAGTCTTCCCACAACAAC
65 TTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAGTCTGCCCACTACAAC
* * *
6109450 TTCAGGGGGATAAGACTTGCATTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACTTCAT
130 TT-AGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGAT
* * * *
6109515 GCGATCTACTTTATTGCTACTTCAGAGAGATAAGATCTATTATTTGAATCCACTCCACTGA-AAC
194 GCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAAT-CACTCCACTGACAAC
* * * * **
6109579 TTCACGGAGATGAGATTACTGGCTTTAATCTATTCCACTGCAAACTCAGGGAGATAAGATTTGCC
258 TTCAGGGAGATGAGATTACTAGCTTTAATCTACTCCACTACAAACTCAGGGAGATAAGATTCACC
* * * **
6109644 ATATTCGATTTACTCCACTACTGCTTCAAGGGGATAAGACTTGCTTTCCCA-TTCTGCTCCGCTG
323 ATATTCAATCT-CTCCACTACTACTTCAAGGGGATAAGACTTGCTTTTTCAGTT-TGCTCCGCTG
* * * * * *
6109708 TAACCTTAGGGAGATAAGACCTGATGCGACCTATTCTACTGCAACTAC
386 CAACCTTAGGGAGATAAGACTTGATACGATCTACTCTACTGCAACTTC
* * * * * * * * *
6109756 AGAGAGATAGGATCTATTATTCGAATCCGCTACACTGCAACTTTAGGGATATGTGATTACTCGAT
1 AGAGAGATAAGATCTGTTATTCGAATCCGCTCCATTGCAACTTCAGGGAGATGGGATTACTGGTT
* ** * * * **
6109821 TTAATCCACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATC-TTCGATCTGTTCCACAACTG
66 TTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAG-TCTG-CCCACTACAA
* * * * * * * * *
6109885 CTTAGGGAGATAAGA-TCAGCTTTTTCGGTCTGCTCTGCTGTAACCTTAGAGAGATAAGACGTGA
129 CTTAGGGGGATAAGACT-TGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGA
* * * * * *
6109949 TGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCTGCTCTATTG-CTA
193 TGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATC-ACTCCACTGACAA
* * * * * *
6110013 CTTCAGGGAGATGGGATTACTGGCTTTAATTTACCCCACTACAAACTCAGGAAGATAAGATTCTC
257 CTTCAGGGAGATGAGATTACTAGCTTTAATCTACTCCACTACAAACTCAGGGAGATAAGATTCAC
* * * * * *
6110078 CATCTTCAGTCTGC-CCTAC-ATTAGCTTCAAGAGGATAAGACTTTCTTTTTCAGTCTGCTCCGC
322 CATATTCAATCT-CTCC-ACTACTA-CTTCAAGGGGATAAGACTTGCTTTTTCAGTTTGCTCCGC
* * * * *
6110141 TGCAACATCAGGGAGATAAGACCTGATGCAATCTACTCTACTGCAACTTC
384 TGCAACCTTAGGGAGATAAGACTTGATACGATCTACTCTACTGCAACTTC
* * *
6110191 AGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTCGTT
1 AGAGAGATAAGATCTGTTATTCGAATCCGCTCCATTGCAACTTCAGGGAGATGGGATTACTGGTT
* * ** * **
6110256 TTAATCTACTCTACTGCAAACTTAGGGAGATAAGATTTGCCATC-TTCGATCTGCTCCACTACTG
66 TTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAG-TCTGC-CCACTACAA
* * * * *
6110320 CTTAGGGGGATAGGA-TCTGC-TTCTTCGGTCTGCTCCGCTGTAACTTCAGGGAGATAAGACGTG
129 CTTAGGGGGATAAGACT-TGCTTTC-TCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTG
* * * * *
6110383 ATGCGATCTACTCTACTGCAACTTCAGAGAGATATGACCTGTTATTTGAATCTGCTCTACT-ACA
192 ATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATC-ACTCCACTGACA
* * * * * *
6110447 ACTTCA-GGAGATGAGATTTCTTGCTTTAATCTACTCCCCTGCAAACCACAGAGAGATAAGATTC
256 ACTTCAGGGAGATGAGATTACTAGCTTTAATCTACTCCACTACAAA-CTCAGGGAGATAAGATTC
* * * * * * *
6110511 ACCATATTCAATCTCTCCATTTCAACTTCAGGGGGTTAAGACTTGCTTTTTCAGTTTGCTTCGTT
320 ACCATATTCAATCTCTCCACTACTACTTCAAGGGGATAAGACTTGCTTTTTCAGTTTGCTCCGCT
* *
6110576 GCAACCTTAGGGATATAAGACTTGATACGATCTACTCTACTACAACTTC
385 GCAACCTTAGGGAGATAAGACTTGATACGATCTACTCTACTGCAACTTC
* * *
6110625 AGAGAGATAAGATCTGTTATTCGAATCCACTCCATTACAACTTCAGGGAGATGGGACTACTGGTT
1 AGAGAGATAAGATCTGTTATTCGAATCCGCTCCATTGCAACTTCAGGGAGATGGGATTACTGGTT
* *
6110690 TTAATCTACTCCACTGCAAACTCAGGAAGATAAGATTCACCATCTTTAGTCTGCCCACTTCAACT
66 TTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAGTCTGCCCACTACAACT
* *
6110755 TCAGGGGGATAAGACTTGTTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGGCCTGATG
131 T-AGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATG
* *
6110820 CGATCTACTCTACTGCAACTTCAGAGAGATAGGGTCTATTATTTGAATCCGCTCCACTG-CAACT
195 CGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAAT-CACTCCACTGACAACT
* * * * * * * **
6110884 TTAGGGAGATGTGATTACTCA-TTTTAATCCACTCCACTGCAAACTCAGGTAGATAATATTTGCC
259 TCAGGGAGATGAGATTACT-AGCTTTAATCTACTCCACTACAAACTCAGGGAGATAAGATTCACC
* * * * *
6110948 ATCTTCGATCTACTCCACTACTGCTT--AGGGAGATAAGA-TCTGCTTTTTCAGTCTGCTCTGCT
323 ATATTCAATCT-CTCCACTACTACTTCAAGGG-GATAAGACT-TGCTTTTTCAGTTTGCTCCGCT
* * **
6111010 GTAACCTTAGGGAGATAAGACGTGATGTGATCTACTCTACTGCAACTTC
385 GCAACCTTAGGGAGATAAGACTTGATACGATCTACTCTACTGCAACTTC
* * * **
6111059 AGAGAGATAAGATCTGTTATTTGAATCTGCGCCATTGCAACTTCAGGGAGATGGGATTACTGGCG
1 AGAGAGATAAGATCTGTTATTCGAATCCGCTCCATTGCAACTTCAGGGAGATGGGATTACTGGTT
* * * *
6111124 TTAATTTACCCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCTACTTAAAA
66 TTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAGTCTGCCC-AC-TACAA
* * * * *
6111189 TTTAAGGGGATAAGACTTTCTTTCTCAGTCTGCTTCGCTGCAACATCAGGGAGATAAGACCTGAT
129 CTTAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGAT
* * * * *
6111254 GTGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTGTTATTTGAA--ACTGTC-TTTACAAC
194 GCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCACT-CCACTGACAAC
* * * *
6111316 TTCAGGGAGATGAGATTACTAGCTTTAATATACTACACTACAAACACAGGGAGATAATATTCACC
258 TTCAGGGAGATGAGATTACTAGCTTTAATCTACTCCACTACAAACTCAGGGAGATAAGATTCACC
* * * * * * * *
6111381 ATATTCAATCTGC-CCTATTTCAACTTCAGGGGGTTAAGACATACTTTTTCAGTTTGCTTCGCTG
323 ATATTCAATCT-CTCC-ACTACTACTTCAAGGGGATAAGACTTGCTTTTTCAGTTTGCTCCGCTG
* *
6111445 CAACCTTAGGGATATAAGACTTGATACGATCTACTCTACTGCAACTTT
386 CAACCTTAGGGAGATAAGACTTGATACGATCTACTCTACTGCAACTTC
* * *
6111493 AGAGAGATAAGATCTGTTATTCGAATCCGCTCCATTACAGCTTCAGGGAGATGGGATTGCTGGTT
1 AGAGAGATAAGATCTGTTATTCGAATCCGCTCCATTGCAACTTCAGGGAGATGGGATTACTGGTT
* * * *
6111558 TTAATATACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAGTCTTCCAACTTCAACC
66 TTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAGTCTGCCCACTACAA-C
*
6111623 TTAGGGAGATAAGACTT
130 TTAGGGGGATAAGACTT
6111640 CATGCGATCT
Statistics
Matches: 1958, Mismatches: 314, Indels: 94
0.83 0.13 0.04
Matches are distributed among these distances:
432 12 0.01
433 267 0.14
434 758 0.39
435 897 0.46
436 24 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (433 bp):
AGAGAGATAAGATCTGTTATTCGAATCCGCTCCATTGCAACTTCAGGGAGATGGGATTACTGGTT
TTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAGTCTGCCCACTACAACT
TAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGC
GATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCACTCCACTGACAACTTC
AGGGAGATGAGATTACTAGCTTTAATCTACTCCACTACAAACTCAGGGAGATAAGATTCACCATA
TTCAATCTCTCCACTACTACTTCAAGGGGATAAGACTTGCTTTTTCAGTTTGCTCCGCTGCAACC
TTAGGGAGATAAGACTTGATACGATCTACTCTACTGCAACTTC
Found at i:6110272 original size:44 final size:44
Alignment explanation
Indices: 6110140--6111110 Score: 223
Period size: 44 Copynumber: 22.4 Consensus size: 44
6110130 GTCTGCTCCG
* *
6110140 CTGCAACATCAGGGAGATAAGACCTG--A--TGCAATCTACTCTA
1 CTGCAACTTCAGGGAGATAAGATCTGTTATTTG-AATCTACTCTA
* ** *
6110181 CTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCA
1 CTGCAACTTCAGGGAGATAAGATCTGTTATTTGAATCTACTCTA
**
6110225 CTGCAACTTCAGGGAGATGGGATTACTCG-T-TTT-AATCTACTCTA
1 CTGCAACTTCAGGGAGATAAGA-T-CT-GTTATTTGAATCTACTCTA
* ** * *
6110269 CTGCAAACTT-AGGGAGATAAGATTTGCCATCTTCG-ATCTGCTCCA
1 CTGC-AACTTCAGGGAGATAAGATCTGTTAT-TT-GAATCTACTCTA
* ** * * * * * * **
6110314 CTACTGCTT-AGGGGGATAGGATCTGCTTCTTCG-GTCTGCTCCG
1 CTGCAACTTCAGGGAGATAAGATCTG-TTATTTGAATCTACTCTA
* * **
6110357 CTGTAACTTCAGGGAGATAAGA-C-GTGATGCG-ATCTACTCTA
1 CTGCAACTTCAGGGAGATAAGATCTGTTATTTGAATCTACTCTA
* * * *
6110398 CTGCAACTTCAGAGAGATATGACCTGTTATTTGAATCTGCTCTA
1 CTGCAACTTCAGGGAGATAAGATCTGTTATTTGAATCTACTCTA
* * * * * **
6110442 CTACAACTTCA-GGAGATGAGATTTCTTGCTTT-AATCTACTCCC
1 CTGCAACTTCAGGGAGATAAGATCTGTT-ATTTGAATCTACTCTA
** * *** * *
6110485 CTGCAAACCACAGAGAGATAAGAT-TCACCATATTCAATCT-CTCCA
1 CTGC-AACTTCAGGGAGATAAGATCT-GTTAT-TTGAATCTACTCTA
* * * * * * * *
6110530 TTTCAACTTCAGGGGGTTAAGA-CTTGCTT-TTTCAGTTTGCT-T-
1 CTGCAACTTCAGGGAGATAAGATC-TG-TTATTTGAATCTACTCTA
* * **
6110572 CGTTGCAACCTT-AGGGATATAAGA-CT-TGATACG-ATCTACTCTA
1 C--TGCAA-CTTCAGGGAGATAAGATCTGTTATTTGAATCTACTCTA
* * * * *
6110615 CTACAACTTCAGAGAGATAAGATCTGTTATTCGAATCCACTCCA
1 CTGCAACTTCAGGGAGATAAGATCTGTTATTTGAATCTACTCTA
* * ** * *
6110659 TTACAACTTCAGGGAGATGGGACTACTGGT-TTT-AATCTACTCCA
1 CTGCAACTTCAGGGAGATAAGA-T-CTGTTATTTGAATCTACTCTA
* *** * * * *
6110703 CTGCAAAC-TCAGGAAGATAAGAT-TCACCATCTTTAGTCTGC-CCA
1 CTGC-AACTTCAGGGAGATAAGATCT-GTTAT-TTGAATCTACTCTA
* * * * * **
6110747 CTTCAACTTCAGGGGGATAAGA-CTTGTT-TTCTCAGTCTGCTCCG
1 CTGCAACTTCAGGGAGATAAGATC-TGTTATT-TGAATCTACTCTA
* ** **
6110791 CTGCAACCTCAGGGAGATAAGGCCTG--ATGCG-ATCTACTCTA
1 CTGCAACTTCAGGGAGATAAGATCTGTTATTTGAATCTACTCTA
* * * * ** *
6110832 CTGCAACTTCAGAGAGATAGGGTCTATTATTTGAATCCGCTCCA
1 CTGCAACTTCAGGGAGATAAGATCTGTTATTTGAATCTACTCTA
* ** * * * * *
6110876 CTGCAACTTTAGGGAGATGTGAT-TACTCATTTTAATCCACTCCA
1 CTGCAACTTCAGGGAGATAAGATCT-GTTATTTGAATCTACTCTA
* * * ** *
6110920 CTGCAAAC-TCAGGTAGATAATATTTGCCATCTTCG-ATCTACTCCA
1 CTGC-AACTTCAGGGAGATAAGATCTGTTAT-TT-GAATCTACTCTA
* ** * * * *
6110965 CTACTGCTT-AGGGAGATAAGATCTGCTT-TTTCAGTCTGCTCTG
1 CTGCAACTTCAGGGAGATAAGATCTG-TTATTTGAATCTACTCTA
* * *
6111008 CTGTAACCTT-AGGGAGATAAGA-C-GTGATGTG-ATCTACTCTA
1 CTGCAA-CTTCAGGGAGATAAGATCTGTTATTTGAATCTACTCTA
* * * *
6111049 CTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCTGCGCCA
1 CTGCAACTTCAGGGAGATAAGATCTGTTATTTGAATCTACTCTA
*
6111093 TTGCAACTTCAGGGAGAT
1 CTGCAACTTCAGGGAGAT
6111111 GGGATTACTG
Statistics
Matches: 662, Mismatches: 199, Indels: 135
0.66 0.20 0.14
Matches are distributed among these distances:
40 6 0.01
41 124 0.19
42 12 0.02
43 93 0.14
44 338 0.51
45 76 0.11
46 12 0.02
47 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (44 bp):
CTGCAACTTCAGGGAGATAAGATCTGTTATTTGAATCTACTCTA
Found at i:6111944 original size:218 final size:218
Alignment explanation
Indices: 6111618--6115335 Score: 2444
Period size: 218 Copynumber: 17.1 Consensus size: 218
6111608 CTTCCAACTT
* * * * * * * *
6111618 CAACCTTAGGGAGATAAGACTTCATGCGATCTACTTTACTGCTACTTTAGAGATAT-TGTATCTA
1 CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAG-ATCTG
* *
6111682 TTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATGTACTCCACTG
65 TTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTG
* * ** * * ***
6111747 CAAACTTAGGTTA-ATAAGATTTGCCATTTTCGATCTGCTCCACTACTGTTTCAAGGGGATAAGA
130 CAAACTCAGG-GAGATAAGATTCACCATATTCGATCTGCTCCACTTCAACTTCAAGGGGATAAGA
* *
6111811 CTTGCTTTCTCAGTTTGCTCCGCTA
194 CTTGCTTTCTCAGTCTGCTCCGCTG
* * * *
6111836 CAACCTTAGAGAGATAAGACCTGATGCGATCTACTCTACAGCAACTTCAGAGAGATAGGATCTAT
1 CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
* * * * * * * * *
6111901 TATTTGAATTCGTTCCGCTGCAAATTTAGGAAGACGGGATTACTGGCTTTAATCTACCCCACTGC
66 TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGC
* * *
6111966 AAACTCAGGGAGATAAGATTCACCATCTTC-AGTCTGCCCCACTTCATCTTCAAGGGGATAAGAC
131 AAACTCAGGGAGATAAGATTCACCATATTCGA-TCTGCTCCACTTCAACTTCAAGGGGATAAGAC
* * *
6112030 TTTCTCTCTCAGTCTGCTCCACTG
195 TTGCTTTCTCAGTCTGCTCCGCTG
* *
6112054 CAACATCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
1 CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
* * * * * * * *
6112119 TATTTGGATCCGCTCGACTGCAACATAAGGGGAGATGAAATTACTAGCTTTAATCTACTCTAGTG
66 TATTTGAATCCGCTCCACTGCAACTTCA-GGGAGATGAGATTACTGGCTTTAATCTACTCCACTG
* * * *
6112184 CAAACTCAGGGAGATAAGATTCACCATATTTCAATCTG-TCCTATTTCAACTTCAGGGGGTTAAG
130 CAAACTCAGGGAGATAAGATTCACCATA-TTCGATCTGCTCC-ACTTCAACTTCAAGGGGATAAG
* * * * ** *
6112248 ACTTACTTTTTCAGTTTACTTGGTTG
193 ACTTGCTTTCTCAGTCTGCTCCGCTG
* * * * * *
6112274 CAACCTTAGGGACATAAAACTTGATTCGATCTACTCTACTACAACCTCAGAGAGATAAGATCTGT
1 CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
* * * * * *
6112339 TATTCGAATCCGCTCCATTACAACTTCAGGGAGATG-GCATTACTAGTTTTAATCTACTCCACTC
66 TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAG-ATTACTGGCTTTAATCTACTCCACTG
* * * * *
6112403 CAAACTCAGTGAGATAAGATTCACCATCTT-TAGTCCGC-CCACTTCAACTTCAGGGGGATAAGA
130 CAAACTCAGGGAGATAAGATTCACCATATTCGA-TCTGCTCCACTTCAACTTCAAGGGGATAAGA
* *
6112466 CTTGTTTTCTCAGTCTGCCCCGCTG
194 CTTGCTTTCTCAGTCTGCTCCGCTG
* * * * *
6112491 CAACCTTAGGGAGATAAGACCTGATGCGATGTACTCTACTACAACTACAGAGAGATATGATCTAT
1 CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
*
6112556 TATTTGAATCCGCTCTACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGC
66 TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGC
*** * * **
6112621 AAACTCAGGGAGATAAGATTTGTCATATTCGATCTGCTACACTACTGCTTCAAGGGGATAAGACT
131 AAACTCAGGGAGATAAGATTCACCATATTCGATCTGCTCCACTTCAACTTCAAGGGGATAAGACT
*
6112686 TGCTTTCTCATTCTGCTCCGCTG
196 TGCTTTCTCAGTCTGCTCCGCTG
* * * *
6112709 TAACCCTT-GGGAGATAAGACCTGATGCGATCTACTCTATTGCAACTTCAGAGAGATAGGATCTA
1 CAA-CCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTG
* * * * *
6112773 TTATTTGAATCCGCTCCACTGCAACTTTAGGGAGATGTGATTACTCGTTTTAATCCACTCCACTG
65 TTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTG
** * **
6112838 CAAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCTCCACTACTGC-TC-AGGGAGATAAGA
130 CAAACTCAGGGAGATAAGATTCACCATATTCGATCTGCTCCACTTCAACTTCAAGGG-GATAAGA
* ** *
6112901 -TCTGCTTTTTCAGTCTGCTATGATG
194 CT-TGCTTTCTCAGTCTGCTCCGCTG
* * * * *
6112926 TAACCTCAGGGAGATAAGTCGTGATGGGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
1 CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
* * * * * *
6112991 TATTTGAATCTGCTCCATTACAACTTCAGGGAGATGAGATTACTGGGTTTAATTTACCCCACTGC
66 TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGC
6113056 AAACTCAGGGAGATAAGATTCACCATATTC-AGTCTGC-CCTACTTCAACTTCAAGGGGATAAGA
131 AAACTCAGGGAGATAAGATTCACCATATTCGA-TCTGCTCC-ACTTCAACTTCAAGGGGATAAGA
* * *
6113119 CTTTCTTTCTCAGCCTGCTCTGCTG
194 CTTGCTTTCTCAGTCTGCTCCGCTG
* * * *
6113144 CAACATCAGAGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTGT
1 CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
** * * * *
6113209 TATTTGAATCTTCTCCTCTACAACTTCAGGGAGATGAGATTACTAGCTTTAATCTACTCCACTAC
66 TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGC
* * ** * * * *
6113274 AAACTCAGGGAGGTAATATTCACCATATTAAATCTGCCCCATTTCAACTTCAGGGGGTTAAGACT
131 AAACTCAGGGAGATAAGATTCACCATATTCGATCTGCTCCACTTCAACTTCAAGGGGATAAGACT
* * *
6113339 TACTTTTTCAGTCTGCTTCGCTG
196 TGCTTTCTCAGTCTGCTCCGCTG
* * *
6113362 CAACCTTAGGGATATAAGACTTGATACGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
1 CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
* * * * ** * *
6113427 TATTCGAATCCGCTCCATTTCAACTTCAGGGATATGAGATTACTAACTTTAATTTACTCCACTGT
66 TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGC
* *******************************
6113492 AAACTCAGGGAGATAAGATTCAGCATATTC-A--ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
131 AAACTCAGGGAGATAAGATTCACCATATTCGATCTGCTCCACTTCAACTTCAAGGGGATAAGACT
***********************
6113554 NNNNNNNNNNNNNNNNNNNNNNN
196 TGCTTTCTCAGTCTGCTCCGCTG
*****************************************************************
6113577 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
*****************************************************************
6113642 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGC
******************** * * * * *
6113707 NNNNNNNNNNNNNNNNNNNNCACCATCTTC-AGTCTG-GCCATTTCAACTTTAGGGGGATAAGAC
131 AAACTCAGGGAGATAAGATTCACCATATTCGA-TCTGCTCCACTTCAACTTCAAGGGGATAAGAC
*
6113770 CTGCTTTCTCAGTCTGCTCCGCTG
195 TTGCTTTCTCAGTCTGCTCCGCTG
* * * * * *
6113794 CAACCTCAGGGAGATAAGACCTGATGCGATGTACGCTACTGCAACTTCAGAGTGATAGGATCTAT
1 CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
* ** * *
6113859 TATTTGAATCCGCTTCACTGCAACTTCAGATAGATGAGATTACTAGCTTTAATCTACTACACTGC
66 TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGC
** * ** *
6113924 AAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCTCCACTACTGCTTCAGGGGGATAAGACT
131 AAACTCAGGGAGATAAGATTCACCATATTCGATCTGCTCCACTTCAACTTCAAGGGGATAAGACT
* *
6113989 TGCTTTCCCATTCTGCTCCGCTG
196 TGCTTTCTCAGTCTGCTCCGCTG
* * * *
6114012 TAACCTTAGGGAGATAAGACCTGATACGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTAT
1 CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
* * * * *
6114077 TATTTGAATCCGCTCCACTGCAACTTTAGGGAGATGTGATTACTCGTTTTAATCCACTCCACTGC
66 TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGC
** * * * ** *
6114142 AAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGGTCCACTACTGCTT--AGGGAAATAAGA-
131 AAACTCAGGGAGATAAGATTCACCATATTCGATCTGCTCCACTTCAACTTCAAGGG-GATAAGAC
* * * **
6114204 TCTACTTTTTTAGTCTGCTATGCTG
195 T-TGCTTTCTCAGTCTGCTCCGCTG
* ** * *
6114229 TAACCAAAGGGAGATAAGACGTGATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
1 CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
* * * * * * * *
6114294 TATTTGAATCTGCTCCATTGCAACTTCAGGGAGATGGGGTTCCTGGATTTAATGTACCCCACTGC
66 TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGC
* *
6114359 AAACTCAGGGAGATAAAATTCACCATATTC-AGTCTGC-CCTACTTCAACTTCAAGGGGATAAAA
131 AAACTCAGGGAGATAAGATTCACCATATTCGA-TCTGCTCC-ACTTCAACTTCAAGGGGATAAGA
* *
6114422 CTTTCTTTCTCAGTCTGCTCTGCTG
194 CTTGCTTTCTCAGTCTGCTCCGCTG
* * * *
6114447 CAACATCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAAAGAGATAGGATCTGT
1 CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
* * * * * *
6114512 TATTTGAATCTGCTCCTCTACAACTTTAGGGAGATGAGATTACTAGCTTTAATCTACTCCACTAC
66 TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGC
* ** * ** * * *
6114577 AAACTCAGGGAGATAATATTCACCATATTAAATCTGCCCCGTTTTAACTTCAGGGGGTTAAGACT
131 AAACTCAGGGAGATAAGATTCACCATATTCGATCTGCTCCACTTCAACTTCAAGGGGATAAGACT
* * * *
6114642 TACTTT-TCAGTTTGGTTCGCTG
196 TGCTTTCTCAGTCTGCTCCGCTG
* * * *
6114664 CAACCTTAGGGATATAAGACTTGATACGATCTACTCTACTGCAACTTCAGAGAGACAAGATCTGT
1 CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
* * * * * *
6114729 TATTCGAATCTGCTCCATTACAACTTCAGGGAGATGGGATTACTGGTTTTAATCTACTCCACTGC
66 TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGC
* * *
6114794 AAACTCAGGGAGATAAGATTCACCATCGTTAG-TCTGC-CCACTTCAACTTCAGGGGGATAAGAC
131 AAACTCAGGGAGATAAGATTCACCAT-ATTCGATCTGCTCCACTTCAACTTCAAGGGGATAAGAC
6114857 TTGCTTTCTCAGTCTGCTCCGCTG
195 TTGCTTTCTCAGTCTGCTCCGCTG
* * * * * * * *
6114881 CAACCTCAAGGAGATAAAACCTGATGCGATGTACTTTACTACAACTTCAGAGAGATAGGATCTAT
1 CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
* *
6114946 TATTTGAATCCGCTCCACAGCAACTTCAGGGAGATGAGATTACTGGCTCTAATCTACTCCACTGC
66 TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGC
* * * * **
6115011 AAACTCAGGGAGATAAGACTT-GCCATATTCGATTTACTCCACTACTGCTTCAAGGGGATAAGAC
131 AAACTCAGGGAGATAAGA-TTCACCATATTCGATCTGCTCCACTTCAACTTCAAGGGGATAAGAC
*
6115075 TTGCTTTCTCATTCTGCTCCGCTG
195 TTGCTTTCTCAGTCTGCTCCGCTG
* * * * * * * * *
6115099 TAACCTTA-GAATGATAAGATCTGATTCGATCCACTCTACTGCAACTTTAAAGAGATAGGATCTA
1 CAACCTTAGGGA-GATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTG
* * * *
6115163 TTATTTGAATCCGCTCCACTGCAACTTTAGGGAGATGTA-ATTACTCGTTTTAATCCACTCCACT
65 TTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATG-AGATTACTGGCTTTAATCTACTCCACT
*** * * ** *
6115227 GCAAACTCAGGGAGATAAGATTTGTCATCTTCGATCTGCTCCACTACTGCTT--AGGGAGAAAAG
129 GCAAACTCAGGGAGATAAGATTCACCATATTCGATCTGCTCCACTTCAACTTCAAGGG-GATAAG
* *
6115290 A-TCTGCCTTT-TCGGTCTGCTCTGCTG
193 ACT-TG-CTTTCTCAGTCTGCTCCGCTG
*
6115316 TAACCTTAGGGAGATAAGAC
1 CAACCTTAGGGAGATAAGAC
6115336 TTGCTTTCTC
Statistics
Matches: 2623, Mismatches: 827, Indels: 101
0.74 0.23 0.03
Matches are distributed among these distances:
215 9 0.00
216 54 0.02
217 881 0.34
218 1423 0.54
219 135 0.05
220 120 0.05
221 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.29
Consensus pattern (218 bp):
CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGC
AAACTCAGGGAGATAAGATTCACCATATTCGATCTGCTCCACTTCAACTTCAAGGGGATAAGACT
TGCTTTCTCAGTCTGCTCCGCTG
Found at i:6112070 original size:44 final size:46
Alignment explanation
Indices: 6111957--6112073 Score: 120
Period size: 44 Copynumber: 2.6 Consensus size: 46
6111947 CTTTAATCTA
6111957 CCCCACTGCAA-ACTCAGGGAGATAAGA-TTCACCATCTTCAGTCTG
1 CCCCACTGCAACA-TCAGGGAGATAAGACTTCACCATCTTCAGTCTG
* * * *
6112002 CCCCACTTCATCTTCAAGGG-GATAAGACTT--TC-TCTCTCAGTCTG
1 CCCCACTGCAACATC-AGGGAGATAAGACTTCACCATCT-TCAGTCTG
*
6112046 CTCCACTGCAACATCAGGGAGATAAGAC
1 CCCCACTGCAACATCAGGGAGATAAGAC
6112074 CTGATGCGAT
Statistics
Matches: 59, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
43 7 0.12
44 28 0.47
45 18 0.31
46 6 0.10
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (46 bp):
CCCCACTGCAACATCAGGGAGATAAGACTTCACCATCTTCAGTCTG
Found at i:6112684 original size:829 final size:823
Alignment explanation
Indices: 6110794--6112638 Score: 2046
Period size: 825 Copynumber: 2.2 Consensus size: 823
6110784 TGCTCCGCTG
* * * * * * * * **
6110794 CAACCTCAGGGAGATAAGGCCTGATGCGATCTACTCTACTGCAA-CTTCAGAGAGATAGGGTCTA
1 CAACCTTAGGGAGATAAGACTTCATGCCATCTACCCCACTGCAACCTT-AGAGATATAGTATCTA
* ** * * ** * *
6110858 TTATTTGAATCCGCTCCACTGCAACTTTAGGGAGAT-GTGATTACT-CATTTTAATCCACTCCAC
65 TGATGCGAATCCACTCCACTACAACTACAGAGAGATAG-GATTACTGGA-TTTAATCCACTCCAC
* * * ** *
6110921 TGCAAACTCAGGT-AGATAATATTTGCCATCTTCGATCTACTCCACTAC-TGCT-TAGGGAGATA
128 TGCAAACTTAGGTGA-ATAAGATTTGCCAT-TTCAATCTACTCCACTACAAACTCAAGGG-GATA
* * ** * *
6110983 AGA-TCTGCTTTTTCAGTCTGCT-CTGCTGTAACCTTAGGGAGATAAGACGTGATGTGATCTACT
190 AGACT-TGCTTTCTCAGTCTGCTAC-ACTACAACCTTAGGG-GATAAGACCTGATGCGATCTACT
* * * * * *
6111046 CTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCTGCGCCATTGCAACTTCAGGGAGAT
252 CTACAGCAACTTCAGAGAGATAAGATCTATTATTTGAATCTGCGCCACTGCAAATTCAGGAAGAC
*
6111111 GGGATTACTGGCGTTAATTTACCCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCT
317 GGGATTACTGGCGTTAATCTACCCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCT
* * * * *
6111176 GCCCTACTTAAAATTTAAGGGGATAAGACTTTCTTTCTCAGTCTGCTTCGCTGCAACATCAGGGA
382 GCCCCACTTAAAATTCAAGGGGATAAGACTTTCTCTCTCAGTCTGCTCCACTGCAACATCAGGGA
* * *
6111241 GATAAGACCTGATGTGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTGTTATTTGAAACTG
447 GATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAAACCG
** * * *
6111306 TCTTTACAACTTCAGGGAGATGAGATTACTAGCTTTAATATACTACACTACAAACACAGGGAGAT
512 TCACTACAACATAAGGGAGATGAAATTACTAGCTTTAATATACTACACTACAAACACAGGGAGAT
*
6111371 AATATTCACCATATTCAATCTGCCCTATTTCAACTTCAGGGGGTTAAGACATACTTTTTCAGTTT
577 AAGATTCACCATATTCAATCTGCCCTATTTCAACTTCAGGGGGTTAAGACATACTTTTTCAGTTT
* * * * * *
6111436 GCTTCGCTGCAACCTTAGGGATATAAGACTTGATACGATCTACTCTACTGCAACTTTAGAGAGAT
642 ACTTCGCTGCAACCTTAGGGACATAAAACTTGATACGATCTACTCTACTACAACCTCAGAGAGAT
* * * *
6111501 AAGATCTGTTATTCGAATCCGCTCCATTACAGCTTCAGGGAGATGGGATTGCTGGTTTTAATATA
707 AAGATCTGTTATTCGAATCCGCTCCATTACAACTTCAGGGAGATGGCATTACTAGTTTTAATATA
* **
6111566 CTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAGTCTTCCAACTT
772 CTCCACTCCAAACTCAGGGAGATAAGATTCACCATCTTTAGTCCGCCAACTT
* *** * * *
6111618 CAACCTTAGGGAGATAAGACTTCATGCGATCTACTTTACTGCTACTTTAGAGATATTGTATCTAT
1 CAACCTTAGGGAGATAAGACTTCATGCCATCTACCCCACTGCAACCTTAGAGATATAGTATCTAT
* ** * * * * * * **
6111683 TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATGTACTCCACTGC
66 GATGCGAATCCACTCCACTACAACTACAGAGAGATAGGATTACTGGATTTAATCCACTCCACTGC
* * * ****
6111748 AAACTTAGGTTAATAAGATTTGCCATTTTCGATCTGCTCCACTACTGTTTCAAGGGGATAAGACT
131 AAACTTAGGTGAATAAGATTTGCCA-TTTCAATCTACTCCACTACAAACTCAAGGGGATAAGACT
* * * *
6111813 TGCTTTCTCAGTTTGCTCCGCTACAACCTTAGAGAGATAAGACCTGATGCGATCTACTCTACAGC
195 TGCTTTCTCAGTCTGCTACACTACAACCTTAG-GGGATAAGACCTGATGCGATCTACTCTACAGC
* * *
6111878 AACTTCAGAGAGATAGGATCTATTATTTGAAT-T-CGTTCCGCTGCAAATTTAGGAAGACGGGAT
259 AACTTCAGAGAGATAAGATCTATTATTTGAATCTGCG--CCACTGCAAATTCAGGAAGACGGGAT
*
6111941 TACTGGCTTTAATCTACCCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCC
322 TACTGGCGTTAATCTACCCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCC
* **
6112006 ACTTCATCTTCAAGGGGATAAGACTTTCTCTCTCAGTCTGCTCCACTGCAACATCAGGGAGATAA
387 ACTTAAAATTCAAGGGGATAAGACTTTCTCTCTCAGTCTGCTCCACTGCAACATCAGGGAGATAA
* *
6112071 GACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGGATCCGCTCGA
452 GACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAAACCG-TC-A
* * * * *
6112136 CTGCAACATAAGGGGAGATGAAATTACTAGCTTTAATCTACT-CTAGTGCAAACTCAGGGAGATA
515 CTACAACATAA-GGGAGATGAAATTACTAGCTTTAATATACTAC-ACTACAAACACAGGGAGATA
* *
6112200 AGATTCACCATATTTCAATCTGTCCTATTTCAACTTCAGGGGGTTAAGACTTACTTTTTCAGTTT
578 AGATTCACCATA-TTCAATCTGCCCTATTTCAACTTCAGGGGGTTAAGACATACTTTTTCAGTTT
* * *
6112265 ACTTGGTTGCAACCTTAGGGACATAAAACTTGATTCGATCTACTCTACTACAACCTCAGAGAGAT
642 ACTTCGCTGCAACCTTAGGGACATAAAACTTGATACGATCTACTCTACTACAACCTCAGAGAGAT
*
6112330 AAGATCTGTTATTCGAATCCGCTCCATTACAACTTCAGGGAGATGGCATTACTAGTTTTAATCTA
707 AAGATCTGTTATTCGAATCCGCTCCATTACAACTTCAGGGAGATGGCATTACTAGTTTTAATATA
* *
6112395 CTCCACTCCAAACTCAGTGAGATAAGATTCACCATCTTTAGTCCGCCCACTT
772 CTCCACTCCAAACTCAGGGAGATAAGATTCACCATCTTTAGTCCGCCAACTT
* ** * * *
6112447 CAA-CTTCAGGGGGATAAGACTTGTTTTCTCAGTCTGCCCCGCTGCAACCTTAGGGAGATA-AG-
1 CAACCTT-AGGGAGATAAGACTT-CATGC-CA-TCTACCCCACTGCAACCTTA--GAGATATAGT
* ** * * * *
6112509 A-C-CTGATGCG-ATGTACTCTACTACAACTACAGAGAGATATGATCTA-T-TATTTGAATCCGC
60 ATCTATGATGCGAATCCACTCCACTACAACTACAGAGAGATAGGAT-TACTGGATTT-AATCCAC
* * * *
6112569 TCTACTGC-AACTTCAGG-GAGATGAGATTACTGGC-TTT-AATCTACTCCACTGCAAACTC-AG
123 TCCACTGCAAACTT-AGGTGA-ATAAGATT--TGCCATTTCAATCTACTCCACTACAAACTCAAG
6112629 GGAGATAAGA
184 GG-GATAAGA
6112639 TTTGTCATAT
Statistics
Matches: 863, Mismatches: 128, Indels: 56
0.82 0.12 0.05
Matches are distributed among these distances:
823 2 0.00
824 147 0.17
825 291 0.34
826 9 0.01
827 12 0.01
828 89 0.10
829 279 0.32
830 8 0.01
831 5 0.01
832 14 0.02
833 1 0.00
834 6 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (823 bp):
CAACCTTAGGGAGATAAGACTTCATGCCATCTACCCCACTGCAACCTTAGAGATATAGTATCTAT
GATGCGAATCCACTCCACTACAACTACAGAGAGATAGGATTACTGGATTTAATCCACTCCACTGC
AAACTTAGGTGAATAAGATTTGCCATTTCAATCTACTCCACTACAAACTCAAGGGGATAAGACTT
GCTTTCTCAGTCTGCTACACTACAACCTTAGGGGATAAGACCTGATGCGATCTACTCTACAGCAA
CTTCAGAGAGATAAGATCTATTATTTGAATCTGCGCCACTGCAAATTCAGGAAGACGGGATTACT
GGCGTTAATCTACCCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTT
AAAATTCAAGGGGATAAGACTTTCTCTCTCAGTCTGCTCCACTGCAACATCAGGGAGATAAGACC
TGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAAACCGTCACTACAA
CATAAGGGAGATGAAATTACTAGCTTTAATATACTACACTACAAACACAGGGAGATAAGATTCAC
CATATTCAATCTGCCCTATTTCAACTTCAGGGGGTTAAGACATACTTTTTCAGTTTACTTCGCTG
CAACCTTAGGGACATAAAACTTGATACGATCTACTCTACTACAACCTCAGAGAGATAAGATCTGT
TATTCGAATCCGCTCCATTACAACTTCAGGGAGATGGCATTACTAGTTTTAATATACTCCACTCC
AAACTCAGGGAGATAAGATTCACCATCTTTAGTCCGCCAACTT
Found at i:6112900 original size:435 final size:435
Alignment explanation
Indices: 6111618--6115273 Score: 2394
Period size: 435 Copynumber: 8.4 Consensus size: 435
6111608 CTTCCAACTT
* * * * * * * *
6111618 CAACCTTAGGGAGATAAGACTTCATGCGATCTACTTTACTGCTACTTTAGAGATAT-TGTATCTA
1 CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAG-ATCTG
* *
6111682 TTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATGTACTCCACTG
65 TTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTG
* * ** * ***
6111747 CAAACTTAGGTTA-ATAAGATTTGCCATTTTCGATCTGCTCC-ACTACTGTTTCAAGGGGATAAG
130 CAAACTCAGG-GAGATAAGATTCACCATATTCGATCTGCTCCTACTACAACTTCAAGGGGATAAG
*
6111810 ACTTGCTTTCTCAGTTTGCTCCGCTACAACCTTAGAGAGATAAGACCTGATGCGATCTACTCTAC
194 ACTTGCTTTCTCAGTTTGCTCCGCTGCAACCTTAGAGAGATAAGACCTGATGCGATCTACTCTAC
* * * * * * * * *
6111875 AGCAACTTCAGAGAGATAGGATCTATTATTTGAATTCGTTCCGCTGCAAATTTAGGAAGACGGGA
259 TGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTACAACTTCAGGGAGA-TGGA
* * *
6111940 TTACTGGCTTTAATCTACCCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCC
323 TTACTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATATTCAGTCTGCCC
* * * *
6112005 CACTTCATCTTCAAGGGGATAAGACTT-TCTCTCTCAGTCTGCTCCACTG
388 CACTTCAACTTCAGGGGGATAAGACTTGT-T-TTTCAGTCTGCTCCGCTG
* *
6112054 CAACATCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
1 CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
* * * * * * * *
6112119 TATTTGGATCCGCTCGACTGCAACATAAGGGGAGATGAAATTACTAGCTTTAATCTACTCTAGTG
66 TATTTGAATCCGCTCCACTGCAACTTCA-GGGAGATGAGATTACTGGCTTTAATCTACTCCACTG
* * * * *
6112184 CAAACTCAGGGAGATAAGATTCACCATATTTCAATCTG-TCCTATTTCAACTTCAGGGGGTTAAG
130 CAAACTCAGGGAGATAAGATTCACCATA-TTCGATCTGCTCCTACTACAACTTCAAGGGGATAAG
* * * ** * * * * * *
6112248 ACTTACTTTTTCAGTTTACTTGGTTGCAACCTTAGGGACATAAAACTTGATTCGATCTACTCTAC
194 ACTTGCTTTCTCAGTTTGCTCCGCTGCAACCTTAGAGAGATAAGACCTGATGCGATCTACTCTAC
* * * * * *
6112313 TACAACCTCAGAGAGATAAGATCTGTTATTCGAATCCGCTCCATTACAACTTCAGGGAGATGGCA
259 TGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTACAACTTCAGGGAGATGG-A
* * * * * *
6112378 TTACTAGTTTTAATCTACTCCACTCCAAACTCAGTGAGATAAGATTCACCATCTTTAGTCCG-CC
323 TTACTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATATTCAGTCTGCCC
*
6112442 CACTTCAACTTCAGGGGGATAAGACTTGTTTTCTCAGTCTGCCCCGCTG
388 CACTTCAACTTCAGGGGGATAAGACTTGTTTT-TCAGTCTGCTCCGCTG
* * * * *
6112491 CAACCTTAGGGAGATAAGACCTGATGCGATGTACTCTACTACAACTACAGAGAGATATGATCTAT
1 CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
*
6112556 TATTTGAATCCGCTCTACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGC
66 TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGC
*** * **
6112621 AAACTCAGGGAGATAAGATTTGTCATATTCGATCTGCTAC-ACTACTGCTTCAAGGGGATAAGAC
131 AAACTCAGGGAGATAAGATTCACCATATTCGATCTGCTCCTACTACAACTTCAAGGGGATAAGAC
* * *
6112685 TTGCTTTCTCA-TTCTGCTCCGCTGTAACCCTT-GGGAGATAAGACCTGATGCGATCTACTCTAT
196 TTGCTTTCTCAGTT-TGCTCCGCTGCAA-CCTTAGAGAGATAAGACCTGATGCGATCTACTCTAC
* *
6112748 TGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTTAGGGAGATGTGA
259 TGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTACAACTTCAGGGAGATG-GA
* * * ** *
6112813 TTACTCGTTTTAATCCACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTC-GATCTGCT
323 TTACTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATATTCAG-TCTGCC
* ** * ** *
6112877 CCACTACTGC-TCAGGGAGATAAGA-TCTGCTTTTTCAGTCTGCTATGATG
387 CCACTTCAACTTCAGGGGGATAAGACT-TG-TTTTTCAGTCTGCTCCGCTG
* * * * *
6112926 TAACCTCAGGGAGATAAGTCGTGATGGGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
1 CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
* * * * * *
6112991 TATTTGAATCTGCTCCATTACAACTTCAGGGAGATGAGATTACTGGGTTTAATTTACCCCACTGC
66 TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGC
*
6113056 AAACTCAGGGAGATAAGATTCACCATATTC-AGTCTGC-CCTACTTCAACTTCAAGGGGATAAGA
131 AAACTCAGGGAGATAAGATTCACCATATTCGA-TCTGCTCCTACTACAACTTCAAGGGGATAAGA
* ** * * *
6113119 CTTTCTTTCTCAGCCTGCTCTGCTGCAACATCAGAGAGATAAGACCTGATGCGATCTACTCTACT
195 CTTGCTTTCTCAGTTTGCTCCGCTGCAACCTTAGAGAGATAAGACCTGATGCGATCTACTCTACT
* ** *
6113184 GCAACTTCAGAGAGATAGGATCTGTTATTTGAATCTTCTCCTCTACAACTTCAGGGAGATGAGAT
260 GCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTACAACTTCAGGGAGATG-GAT
* * * * *
6113249 TACTAGCTTTAATCTACTCCACTACAAACTCAGGGAGGTAATATTCACCATATTAAATCTGCCCC
324 TACTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATATTCAGTCTGCCCC
* * * *
6113314 ATTTCAACTTCAGGGGGTTAAGACTTACTTTTTCAGTCTGCTTCGCTG
389 ACTTCAACTTCAGGGGGATAAGACTT-GTTTTTCAGTCTGCTCCGCTG
* * *
6113362 CAACCTTAGGGATATAAGACTTGATACGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
1 CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
* * * * ** * *
6113427 TATTCGAATCCGCTCCATTTCAACTTCAGGGATATGAGATTACTAACTTTAATTTACTCCACTGT
66 TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGC
* *******************************
6113492 AAACTCAGGGAGATAAGATTCAGCATATTC-A--ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
131 AAACTCAGGGAGATAAGATTCACCATATTCGATCTGCTCCTACTACAACTTCAAGGGGATAAGAC
*****************************************************************
6113554 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
196 TTGCTTTCTCAGTTTGCTCCGCTGCAACCTTAGAGAGATAAGACCTGATGCGATCTACTCTACTG
*****************************************************************
6113619 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
261 CAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTACAACTTCAGGGAGATGGATTA
******************************************* * * *
6113684 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCATCTTCAGTCTG-GCCAT
326 CTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATATTCAGTCTGCCCCAC
* * *
6113748 TTCAACTTTAGGGGGATAAGACCTGCTTTCTCAGTCTGCTCCGCTG
391 TTCAACTTCAGGGGGATAAGACTTG-TTTTTCAGTCTGCTCCGCTG
* * * * * *
6113794 CAACCTCAGGGAGATAAGACCTGATGCGATGTACGCTACTGCAACTTCAGAGTGATAGGATCTAT
1 CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
* ** * *
6113859 TATTTGAATCCGCTTCACTGCAACTTCAGATAGATGAGATTACTAGCTTTAATCTACTACACTGC
66 TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGC
** ** *
6113924 AAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCTCC-ACTACTGCTTCAGGGGGATAAGAC
131 AAACTCAGGGAGATAAGATTCACCATATTCGATCTGCTCCTACTACAACTTCAAGGGGATAAGAC
* * * *
6113988 TTGCTTTCCCA-TTCTGCTCCGCTGTAACCTTAGGGAGATAAGACCTGATACGATCTACTCTACT
196 TTGCTTTCTCAGTT-TGCTCCGCTGCAACCTTAGAGAGATAAGACCTGATGCGATCTACTCTACT
* *
6114052 GCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTTAGGGAGATGTGAT
260 GCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTACAACTTCAGGGAGATG-GAT
* * * ** * **
6114117 TACTCGTTTTAATCCACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTC-GATCTGGTC
324 TACTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATATTCAG-TCTGCCC
* ** ** ** * **
6114181 CACTACTGCTT-AGGGAAATAAGATCTACTTTTTTAGTCTGCTATGCTG
388 CACTTCAACTTCAGGGGGATAAGA-CTTGTTTTTCAGTCTGCTCCGCTG
* ** * *
6114229 TAACCAAAGGGAGATAAGACGTGATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
1 CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
* * * * * * * *
6114294 TATTTGAATCTGCTCCATTGCAACTTCAGGGAGATGGGGTTCCTGGATTTAATGTACCCCACTGC
66 TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGC
* * *
6114359 AAACTCAGGGAGATAAAATTCACCATATTC-AGTCTGC-CCTACTTCAACTTCAAGGGGATAAAA
131 AAACTCAGGGAGATAAGATTCACCATATTCGA-TCTGCTCCTACTACAACTTCAAGGGGATAAGA
* * * * * *
6114422 CTTTCTTTCTCAGTCTGCTCTGCTGCAACATCAGGGAGATAAGACCTGATGCGATCTACTCTACT
195 CTTGCTTTCTCAGTTTGCTCCGCTGCAACCTTAGAGAGATAAGACCTGATGCGATCTACTCTACT
* * * * *
6114487 GCAACTTCAAAGAGATAGGATCTGTTATTTGAATCTGCTCCTCTACAACTTTAGGGAGATGAGAT
260 GCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTACAACTTCAGGGAGATG-GAT
* * * *
6114552 TACTAGCTTTAATCTACTCCACTACAAACTCAGGGAGATAATATTCACCATATTAAATCTGCCCC
324 TACTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATATTCAGTCTGCCCC
** * * ** * * *
6114617 GTTTTAACTTCAGGGGGTTAAGACTTACTTTTCAGTTTGGTTCGCTG
389 ACTTCAACTTCAGGGGGATAAGACTTGTTTTTCAGTCTGCTCCGCTG
* * * *
6114664 CAACCTTAGGGATATAAGACTTGATACGATCTACTCTACTGCAACTTCAGAGAGACAAGATCTGT
1 CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
* * * * * *
6114729 TATTCGAATCTGCTCCATTACAACTTCAGGGAGATGGGATTACTGGTTTTAATCTACTCCACTGC
66 TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGC
* * * *
6114794 AAACTCAGGGAGATAAGATTCACCATCGTTAG-TCTGC-CC-ACTTCAACTTCAGGGGGATAAGA
131 AAACTCAGGGAGATAAGATTCACCAT-ATTCGATCTGCTCCTACTACAACTTCAAGGGGATAAGA
* * * * *
6114856 CTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCA-AGGAGATAAAACCTGATGCGATGTACTTTAC
195 CTTGCTTTCTCAGTTTGCTCCGCTGCAACCTTAGA-GAGATAAGACCTGATGCGATCTACTCTAC
*
6114920 TACAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCAC-AGCAACTTCAGGGAGATGAG
259 TGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTA-CAACTTCAGGGAGATG-G
* * * * *
6114984 ATTACTGGCTCTAATCTACTCCACTGCAAACTCAGGGAGATAAGACTT-GCCATATTC-GATTTA
322 ATTACTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGA-TTCACCATATTCAG-TCTG
* * ** * * *
6115047 CTCCACTACTGCTTCAAGGGGATAAGACTTGCTTTCTCATTCTGCTCCGCTG
385 CCCCACTTCAACTTCAGGGGGATAAGACTTG-TTTTTCAGTCTGCTCCGCTG
* * * * * * * * *
6115099 TAACCTTA-GAATGATAAGATCTGATTCGATCCACTCTACTGCAACTTTAAAGAGATAGGATCTA
1 CAACCTTAGGGA-GATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTG
* * * *
6115163 TTATTTGAATCCGCTCCACTGCAACTTTAGGGAGATGTA-ATTACTCGTTTTAATCCACTCCACT
65 TTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATG-AGATTACTGGCTTTAATCTACTCCACT
*** *
6115227 GCAAACTCAGGGAGATAAGATTTGTCATCTTCGATCTGCTCC-ACTAC
129 GCAAACTCAGGGAGATAAGATTCACCATATTCGATCTGCTCCTACTAC
6115274 TGCTTAGGGA
Statistics
Matches: 2344, Mismatches: 826, Indels: 100
0.72 0.25 0.03
Matches are distributed among these distances:
432 180 0.08
433 15 0.01
434 221 0.09
435 1212 0.52
436 355 0.15
437 182 0.08
438 179 0.08
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.29
Consensus pattern (435 bp):
CAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGT
TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGC
AAACTCAGGGAGATAAGATTCACCATATTCGATCTGCTCCTACTACAACTTCAAGGGGATAAGAC
TTGCTTTCTCAGTTTGCTCCGCTGCAACCTTAGAGAGATAAGACCTGATGCGATCTACTCTACTG
CAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTACAACTTCAGGGAGATGGATTA
CTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATATTCAGTCTGCCCCAC
TTCAACTTCAGGGGGATAAGACTTGTTTTTCAGTCTGCTCCGCTG
Found at i:6115323 original size:652 final size:651
Alignment explanation
Indices: 6111625--6115338 Score: 2182
Period size: 652 Copynumber: 5.7 Consensus size: 651
6111615 CTTCAACCTT
* * * * * * * * *
6111625 AGGGAGATAAGACTTCATGCGATCTACTTTACTGCTACTTTAGAGATAT-TGTATCTATTATTTG
1 AGGGAGATAAAACCTGATGCGATCTACTCTACTACAACTTCAGAGAGATAAG-ATCTATTATTTG
* * * * * * *
6111689 AATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATGTACTCCACTGCAAACTT
65 AATCCGCTCCACAGCAACTTCAGGGAGATGAGATTACTGGATCTAATCTACCCCACTGCAAACTC
* * ** * * ***
6111754 AGGTTA-ATAAGATTTGCCATTTTC-GATCTGCTCC-ACTACTGTTTCAAGGGGATAAGACTTGC
130 AGG-GAGATAAAATTCACCATATTCAG-TCTAC-CCTACTACAACTTCAAGGGGATAAGACTTGC
* * * * *
6111816 TTTCTCAGTTTGCTCCGCTACAACCTTAGAGAGATAAGACCTGATGCGATCTACTCTACAGCAAC
192 TTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * * * * * *
6111881 TTCAGAGAGATAGGATCTATTATTTGAATTCGTTCCGCTGCAAATTTAGGAAGACGGGATTACTG
257 TTCAAAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTTAGGGAGATGAGATTACTA
* ** * * *
6111946 GCTTTAATCTACCCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTC-AGTCTGCCCCACTT
322 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGA-TCTGCTCCACTA
* * * ** * * *
6112010 CAT-CTTCAAGGGGATAAGACTTTCTCTCTCAGTCTGCTCCACTGCAACATCAGGGAGATAAGAC
386 C-TGCTTCAGGGGGATAAGAC-TGCT-TTTCAGTCTGCTCTGCTGTAACCTTAGGGAGATAAGAC
* * * * * * * *
6112074 CTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGGATCCGCTCGACTG
448 TTGATACGATCTACTCTACTGCAACTTCAGAGAGACAAGATCTATTATTCGAATCCGCTCCACTA
* * ** * * * * *
6112139 CAACATAAGGGGAGATGAAATTACTAGCTTTAATCTACTCTAGTGCAAACTCAGGGAGATAAGAT
513 CAACTTCA-GGGAGATGGGATTACTCGTTTTAATCCACTCCACTGCAAACTCAGGGAGATAAGAT
* * * * * *** * * *
6112204 TCACCATATTTCA-ATCTGTCCTATTTCAACTTCAGGGGGTTAAGA-CTTACTTTTTCAGTTTAC
577 TCACCAT-CTT-AGATCTGGCCCACTACAACTT-AGGGAAATAAGATC-TACTTTCTCAGTCTGC
** * **
6112267 TTGGTTGCAACCTT
638 TACGCTGCAACCAA
* * * * * *
6112281 AGGGACATAAAACTTGATTCGATCTACTCTACTACAACCTCAGAGAGATAAGATCTGTTATTCGA
1 AGGGAGATAAAACCTGATGCGATCTACTCTACTACAACTTCAGAGAGATAAGATCTATTATTTGA
* * * * * *
6112346 ATCCGCTCCATTA-CAACTTCAGGGAGATG-GCATTACTAGTTTTAATCTACTCCACTCCAAACT
66 ATCCGCTCCA-CAGCAACTTCAGGGAGATGAG-ATTACTGGATCTAATCTACCCCACTGCAAACT
* * * * ** * * *
6112409 CAGTGAGATAAGATTCACCATCTTTAGTCCGCCC-ACTTCAACTTCAGGGGGATAAGACTTGTTT
129 CAGGGAGATAAAATTCACCATATTCAGTCTACCCTACTACAACTTCAAGGGGATAAGACTTGCTT
* * * * *
6112473 TCTCAGTCTGCCCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATGTACTCTACTACAACTA
194 TCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTT
* * * * *
6112538 CAGAGAGATATGATCTATTATTTGAATCCGCTCTACTGCAACTTCAGGGAGATGAGATTACTGGC
259 CAAAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTTAGGGAGATGAGATTACTAGC
* *
6112603 TTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGTCATATTCGATCTGCTACACTACTG
324 TTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCTCCACTACTG
* * * *
6112668 CTTCAAGGGGATAAGACTTGCTTTCTCATTCTGCTCCGCTGTAACCCTT-GGGAGATAAGACCTG
389 CTTCAGGGGGATAAGAC-TGCTTT-TCAGTCTGCTCTGCTGTAA-CCTTAGGGAGATAAGACTTG
* * * * * *
6112732 ATGCGATCTACTCTATTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAA
451 ATACGATCTACTCTACTGCAACTTCAGAGAGACAAGATCTATTATTCGAATCCGCTCCACTACAA
* * **
6112797 CTTTAGGGAGATGTGATTACTCGTTTTAATCCACTCCACTGCAAACTCAGGGAGATAAGATTTGC
516 CTTCAGGGAGATGGGATTACTCGTTTTAATCCACTCCACTGCAAACTCAGGGAGATAAGATTCAC
* * ** * * * * * *
6112862 CATATTCGATCT-GCTCCACTACTGCTCAGGGAGATAAGATCTGCTTTTTCAGTCTGCTATGATG
581 CATCTTAGATCTGGC-CCACTACAACTTAGGGAAATAAGATCTACTTTCTCAGTCTGCTACGCTG
* **
6112926 TAACCTC
645 CAACCAA
** * * * *
6112933 AGGGAGATAAGTCGTGATGGGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGA
1 AGGGAGATAAAACCTGATGCGATCTACTCTACTACAACTTCAGAGAGATAAGATCTATTATTTGA
* * * * *
6112998 ATCTGCTCCATTA-CAACTTCAGGGAGATGAGATTACTGGGTTTAATTTACCCCACTGCAAACTC
66 ATCCGCTCCA-CAGCAACTTCAGGGAGATGAGATTACTGGATCTAATCTACCCCACTGCAAACTC
* * * *
6113062 AGGGAGATAAGATTCACCATATTCAGTCTGCCCTACTTCAACTTCAAGGGGATAAGACTTTCTTT
130 AGGGAGATAAAATTCACCATATTCAGTCTACCCTACTACAACTTCAAGGGGATAAGACTTGCTTT
* * * *
6113127 CTCAGCCTGCTCTGCTGCAACATCAGAGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTC
195 CTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTC
* * ** * * *
6113192 AGAGAGATAGGATCTGTTATTTGAATCTTCTCCTCTACAACTTCAGGGAGATGAGATTACTAGCT
260 AAAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTTAGGGAGATGAGATTACTAGCT
* * * ** ** * * * **
6113257 TTAATCTACTCCACTACAAACTCAGGGAGGTAATATTCACCATATTAAATCTGCCCCATTTCAAC
325 TTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCTCCACTACTGC
* * * *
6113322 TTCAGGGGGTTAAGACTTACTTTTTCAGTCTGCT-TCGCTGCAACCTTAGGGATATAAGACTTGA
390 TTCAGGGGGATAAGAC-TGC-TTTTCAGTCTGCTCT-GCTGTAACCTTAGGGAGATAAGACTTGA
* * * *
6113386 TACGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTCGAATCCGCTCCATTTCAAC
452 TACGATCTACTCTACTGCAACTTCAGAGAGACAAGATCTATTATTCGAATCCGCTCCACTACAAC
* * *** ** * *
6113451 TTCAGGGATATGAGATTACTAACTTTAATTTACTCCACTGTAAACTCAGGGAGATAAGATTCAGC
517 TTCAGGGAGATGGGATTACTCGTTTTAATCCACTCCACTGCAAACTCAGGGAGATAAGATTCACC
* ******************************************************
6113516 ATATTCA-A--NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
582 ATCTT-AGATCTGGCCCACTACAACTTAGGGAAATAAGATCTACTTTCTCAGTCTGCTACGCTGC
******
6113578 NNNNNN
646 AACCAA
*****************************************************************
6113584 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 AGGGAGATAAAACCTGATGCGATCTACTCTACTACAACTTCAGAGAGATAAGATCTATTATTTGA
*****************************************************************
6113649 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 ATCCGCTCCACAGCAACTTCAGGGAGATGAGATTACTGGATCTAATCTACCCCACTGCAAACTCA
************* * ** * * * * *
6113714 NNNNNNNNNNNNNCACCATCTTCAGTCTGGCC-ATTTCAACTTTAGGGGGATAAGACCTGCTTTC
131 GGGAGATAAAATTCACCATATTCAGTCTACCCTACTACAACTTCAAGGGGATAAGACTTGCTTTC
* *
6113778 TCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATGTACGCTACTGCAACTTCA
196 TCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCA
* * * * **
6113843 GAGTGATAGGATCTATTATTTGAATCCGCTTCACTGCAACTTCAGATAGATGAGATTACTAGCTT
261 AAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTTAGGGAGATGAGATTACTAGCTT
*
6113908 TAATCTACTACACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCTCCACTACTGCT
326 TAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCTCCACTACTGCT
* * * *
6113973 TCAGGGGGATAAGACTTGCTTTCCCATTCTGCTCCGCTGTAACCTTAGGGAGATAAGACCTGATA
391 TCAGGGGGATAAGAC-TGCTTT-TCAGTCTGCTCTGCTGTAACCTTAGGGAGATAAGACTTGATA
* * * *
6114038 CGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTT
454 CGATCTACTCTACTGCAACTTCAGAGAGACAAGATCTATTATTCGAATCCGCTCCACTACAACTT
* * **
6114103 TAGGGAGATGTGATTACTCGTTTTAATCCACTCCACTGCAAACTCAGGGAGATAAGATTTGCCAT
519 CAGGGAGATGGGATTACTCGTTTTAATCCACTCCACTGCAAACTCAGGGAGATAAGATTCACCAT
* * ** * * * *
6114168 CTTCGATCTGGTCCACTACTGCTTAGGGAAATAAGATCTACTTTTTTAGTCTGCTATGCTGTAAC
584 CTTAGATCTGGCCCACTACAACTTAGGGAAATAAGATCTACTTTCTCAGTCTGCTACGCTGCAAC
6114233 CAA
649 CAA
* * * * *
6114236 AGGGAGATAAGACGTGATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGA
1 AGGGAGATAAAACCTGATGCGATCTACTCTACTACAACTTCAGAGAGATAAGATCTATTATTTGA
* ** * * * * *
6114301 ATCTGCTCCATTGCAACTTCAGGGAGATGGGGTTCCTGGATTTAATGTACCCCACTGCAAACTCA
66 ATCCGCTCCACAGCAACTTCAGGGAGATGAGATTACTGGATCTAATCTACCCCACTGCAAACTCA
* * * *
6114366 GGGAGATAAAATTCACCATATTCAGTCTGCCCTACTTCAACTTCAAGGGGATAAAACTTTCTTTC
131 GGGAGATAAAATTCACCATATTCAGTCTACCCTACTACAACTTCAAGGGGATAAGACTTGCTTTC
* *
6114431 TCAGTCTGCTCTGCTGCAACATCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCA
196 TCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCA
* * * *
6114496 AAGAGATAGGATCTGTTATTTGAATCTGCTCCTCTACAACTTTAGGGAGATGAGATTACTAGCTT
261 AAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTTAGGGAGATGAGATTACTAGCTT
* * ** ** ** *
6114561 TAATCTACTCCACTACAAACTCAGGGAGATAATATTCACCATATTAAATCTGC-CC-CGTTTTAA
326 TAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCTCCAC-TACT-G
* * * * * *
6114624 CTTCAGGGGGTTAAGACTTACTTTTCAGTTTGGT-TCGCTGCAACCTTAGGGATATAAGACTTGA
389 CTTCAGGGGGATAAGAC-TGCTTTTCAGTCTGCTCT-GCTGTAACCTTAGGGAGATAAGACTTGA
* * *
6114688 TACGATCTACTCTACTGCAACTTCAGAGAGACAAGATCTGTTATTCGAATCTGCTCCATTACAAC
452 TACGATCTACTCTACTGCAACTTCAGAGAGACAAGATCTATTATTCGAATCCGCTCCACTACAAC
* *
6114753 TTCAGGGAGATGGGATTACTGGTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACC
517 TTCAGGGAGATGGGATTACTCGTTTTAATCCACTCCACTGCAAACTCAGGGAGATAAGATTCACC
* ** * *
6114818 ATCGTTAG-TCT-GCCCACTTCAACTTCAGGGGGATAAGA-CTTGCTTTCTCAGTCTGCTCCGCT
582 ATC-TTAGATCTGGCCCACTACAACTT-AGGGAAATAAGATC-TACTTTCTCAGTCTGCTACGCT
*
6114880 GCAACCTCA
644 GCAACC-AA
* * *
6114889 A-GGAGATAAAACCTGATGCGATGTACTTTACTACAACTTCAGAGAGATAGGATCTATTATTTGA
1 AGGGAGATAAAACCTGATGCGATCTACTCTACTACAACTTCAGAGAGATAAGATCTATTATTTGA
* *
6114953 ATCCGCTCCACAGCAACTTCAGGGAGATGAGATTACTGGCTCTAATCTACTCCACTGCAAACTCA
66 ATCCGCTCCACAGCAACTTCAGGGAGATGAGATTACTGGATCTAATCTACCCCACTGCAAACTCA
* * * **
6115018 GGGAGATAAGACTT-GCCATATTC-GATTTACTCC-ACTACTGCTTCAAGGGGATAAGACTTGCT
131 GGGAGATAA-AATTCACCATATTCAG-TCTAC-CCTACTACAACTTCAAGGGGATAAGACTTGCT
* * * * * * *
6115080 TTCTCATTCTGCTCCGCTGTAACCTTA-GAATGATAAGATCTGATTCGATCCACTCTACTGCAAC
193 TTCTCAGTCTGCTCCGCTGCAACCTCAGGGA-GATAAGACCTGATGCGATCTACTCTACTGCAAC
*
6115144 TTTAAAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTTAGGGAGATGTA-ATTACT
257 TTCAAAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTTAGGGAGATG-AGATTACT
* * * * *
6115208 CGTTTTAATCCACTCCACTGCAAACTCAGGGAGATAAGATTTGTCATCTTCGATCTGCTCCACTA
321 AGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCTCCACTA
* * *
6115273 CTGCTT-AGGGAGAAAAGATCTGCCTTTTCGGTCTGCTCTGCTGTAACCTTAGGGAGATAAGACT
386 CTGCTTCAGGGGGATAAGA-CTG-CTTTTCAGTCTGCTCTGCTGTAACCTTAGGGAGATAAGACT
6115337 TG
449 TG
6115339 CTTTCTCAGT
Statistics
Matches: 2234, Mismatches: 781, Indels: 90
0.72 0.25 0.03
Matches are distributed among these distances:
649 3 0.00
650 362 0.16
651 42 0.02
652 735 0.33
653 595 0.27
654 60 0.03
655 308 0.14
656 127 0.06
657 2 0.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.29
Consensus pattern (651 bp):
AGGGAGATAAAACCTGATGCGATCTACTCTACTACAACTTCAGAGAGATAAGATCTATTATTTGA
ATCCGCTCCACAGCAACTTCAGGGAGATGAGATTACTGGATCTAATCTACCCCACTGCAAACTCA
GGGAGATAAAATTCACCATATTCAGTCTACCCTACTACAACTTCAAGGGGATAAGACTTGCTTTC
TCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCA
AAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTTAGGGAGATGAGATTACTAGCTT
TAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCTCCACTACTGCT
TCAGGGGGATAAGACTGCTTTTCAGTCTGCTCTGCTGTAACCTTAGGGAGATAAGACTTGATACG
ATCTACTCTACTGCAACTTCAGAGAGACAAGATCTATTATTCGAATCCGCTCCACTACAACTTCA
GGGAGATGGGATTACTCGTTTTAATCCACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCT
TAGATCTGGCCCACTACAACTTAGGGAAATAAGATCTACTTTCTCAGTCTGCTACGCTGCAACCA
A
Found at i:6115324 original size:44 final size:44
Alignment explanation
Indices: 6115276--6115379 Score: 131
Period size: 44 Copynumber: 2.4 Consensus size: 44
6115266 TCCACTACTG
* * * **
6115276 CTTAGGGAGAAAAGA-TCTGCCTTT-TCGGTCTGCTCTGCTGTAAC
1 CTTAGGGAGATAAGACT-TG-CTTTCTCAGTCTGCTCCGCTACAAC
6115320 CTTAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTACAAC
1 CTTAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTACAAC
6115364 CTTAGGGAGATAAGAC
1 CTTAGGGAGATAAGAC
6115380 CTGATGCGAT
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
43 4 0.08
44 48 0.91
45 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (44 bp):
CTTAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTACAAC
Found at i:6115378 original size:261 final size:261
Alignment explanation
Indices: 6115063--6115596 Score: 734
Period size: 261 Copynumber: 2.0 Consensus size: 261
6115053 TACTGCTTCA
* ** * *
6115063 AGGG-GATAAGACTTGCTTTCTCATTCTGCTCCGCTGTAACCTTAGAATGATAAGATCTGATTCG
1 AGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTACAACCTTAGAATGATAAGACCTGATGCG
* *
6115127 ATCCACTCTACTGCAACTTTAAAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTT-T
66 ATCCACTCTACTGCAACTTCAAAGAGATAGGATCTATTATTCGAATCCGCTCCACTGCAACTTCT
* * * *
6115191 AGGGAGATGTAATTACTCGTTTTAATCCACTCCACTGCAAACTCAGGGAGATAAGATTTGTCATC
131 -GGGAGACGTAATTACTCGCTTTAATCCACTCCACTGCAAACTCAAGGAGATAAGATTTGCCATC
* * * ** *
6115256 TTCGATCTGCTCCACTACTGCTTAGGGAGAAAAGATCTGCCTT-TTCGGTCTGCTCTGCTGTAAC
195 TTCGATCTGCTCCACTACCGCTTAGGGAGAAAAGATCT-ACTTCTTCGGTCTGCGCCACTGCAAC
*
6115320 CTT
259 CTC
*
6115323 AGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTACAACCTTAGGGA-GATAAGACCTGATGC
1 AGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTACAACCTTA-GAATGATAAGACCTGATGC
* * * * *
6115387 GATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTCGAATTCGTTCCACTGTAACTTC
65 GATCCACTCTACTGCAACTTCAAAGAGATAGGATCTATTATTCGAATCCGCTCCACTGCAACTTC
* * * * * *
6115452 TGGGAGACGTGATTACTGGCTTTAATCTACTGCTCTGCAAATTCAAGGAGATAAGATTTGCCATC
130 TGGGAGACGTAATTACTCGCTTTAATCCACTCCACTGCAAACTCAAGGAGATAAGATTTGCCATC
*
6115517 TTCGATCTGCTCCACTACCGCTTAGGGAGATAAGATCTACTTCTTCGGTCTGCGCCACTGCAACC
195 TTCGATCTGCTCCACTACCGCTTAGGGAGAAAAGATCTACTTCTTCGGTCTGCGCCACTGCAACC
6115582 TC
260 TC
6115584 AGGGAGATAAGAC
1 AGGGAGATAAGAC
6115597 GTGATGCGAT
Statistics
Matches: 239, Mismatches: 31, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
260 7 0.03
261 229 0.96
262 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.30
Consensus pattern (261 bp):
AGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTACAACCTTAGAATGATAAGACCTGATGCG
ATCCACTCTACTGCAACTTCAAAGAGATAGGATCTATTATTCGAATCCGCTCCACTGCAACTTCT
GGGAGACGTAATTACTCGCTTTAATCCACTCCACTGCAAACTCAAGGAGATAAGATTTGCCATCT
TCGATCTGCTCCACTACCGCTTAGGGAGAAAAGATCTACTTCTTCGGTCTGCGCCACTGCAACCT
C
Found at i:6115604 original size:217 final size:215
Alignment explanation
Indices: 6115320--6116586 Score: 1132
Period size: 217 Copynumber: 5.9 Consensus size: 215
6115310 CTGCTGTAAC
* * *
6115320 CTTAGGGAGATAAGACTTGCTT-TCTCAGTCTGCTCCGCTACAACCTTAGGGAGATAAGACCTGA
1 CTTAGGGAGATAAGAC-TGCTTCT-TCAGTCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGA
* * * * *
6115384 TGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTCGAATTCGTTCCACTGTAAC
64 TGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATTCGCTCCACTGCAAC
* * * * * *
6115449 TTCTGGGAGACGTGATTACTGGCTTTAATCTACTGCTCTGCAAATTCAAGGAGATAAGATTTGCC
129 TTCAGGGAGATGTGATTACT-GCTTTAATCTACTCCTCTACAAACTCAGGGAGATAAGATTTGCC
*
6115514 ATCTTCGATCTGCTCCACTACCG
193 ATCTTCGATCTGCTCCACTACTG
* * * *
6115537 CTTAGGGAGATAAGATCTACTTCTTCGGTCTGCGCCACTGCAACCTCAGGGAGATAAGACGTGAT
1 CTTAGGGAGATAAGA-CTGCTTCTTCAGTCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGAT
* * * * * *
6115602 GCGATCTACTCTACTGCAACTTCTGGGAGATAAGATCTGTTATTTGAATCCACTCCCCGGCAACT
65 GCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATTCGCTCCACTGCAACT
* * *
6115667 TCAAGGAGATGGGATTACT-CATTTTATCTACTCCAT-TACAAACTCAGGGAGATAAGATTTGCC
130 TCAGGGAGATGTGATTACTGC-TTTAATCTACTCC-TCTACAAACTCAGGGAGATAAGATTTGCC
6115730 ATCTTCGATCTGCTCCACTACTG
193 ATCTTCGATCTGCTCCACTACTG
* * * * *
6115753 CTTAGGGAGATAAGAACTGTTTCTTC-TTCTCCTCCCCTTGCAACCTCAGGGAGATAAGACATGA
1 CTTAGGGAGATAAG-ACTGCTTCTTCAGTCTGCTCCAC-TGCAACCTCAGGGAGATAAGACCTGA
* * *
6115817 TGCGATCTACTTCTACTGCAACTTCAGAGAGATATGATCTGTTATTTGAA-TCTGCTCCTCTACA
64 TGCGATCTAC-TCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATTC-GCTCCACTGCA
* * * **
6115881 ACTTCAGGGAGATGAGATTACTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCA
127 ACTTCAGGGAGATGTGATTACT-GCTTTAATCTACTCCTCTACAAACTCAGGGAGATAAGATTTG
* * * * * **
6115946 CCATATTCAATCTGCCCCATTTCAA
191 CCATCTTCGATCTGCTCCACTACTG
* * * * * *
6115971 CTTCAGGGGGTTAAGACTTGCTTTTTCATTCTGCTCCACTGTAACCTTAGGGAGATAAGACCTGA
1 CTT-AGGGAGATAAGAC-TGCTTCTTCAGTCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGA
* * * *
6116036 TGCGATCTACTCTACTTCAACTTTAGAGAGATAGGATCTATTATTTGAATAT-GCTCCACTGCAA
64 TGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAAT-TCGCTCCACTGCAA
* * *
6116100 CTTTAGGGAGATGTGATTACTCGTTTTAATCCACT-CTACTACAAACTCAGGGAGATAAGATTTG
128 CTTCAGGGAGATGTGATTACT-GCTTTAATCTACTCCT-CTACAAACTCAGGGAGATAAGATTTG
*
6116164 CAATCTTCGATCTGCTCCACTACTG
191 CCATCTTCGATCTGCTCCACTACTG
* * ** * * *
6116189 CTTAGGGAGATAGGATCTGCTTCTTC-GATCTGTTCTGCTGTAACGTCAGGGAGATAAGACGTGA
1 CTTAGGGAGATAAGA-CTGCTTCTTCAG-TCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGA
* * *
6116253 TACGATCTACTCTACAGCAACTTCAGAGAGATAAGATCTGTTATTTTAA-----T---CTG---C
64 TGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATTCGCTCCACTGCAAC
* * * * **
6116307 -TC-----CAT-T-ACTACTAGCTTTAATCTACTCCACTACAAACTCAGGGAGATAATATTCACC
129 TTCAGGGAGATGTGATTACT-GCTTTAATCTACTCCTCTACAAACTCAGGGAGATAAGATTTGCC
* ** * * * **
6116364 ATATTAAATCTGCCCCATTTCAA
193 ATCTTCGATCTGCTCCACTACTG
* * * * * * * * * *
6116387 CTTCAGAGG-GTTAAGACTTACTTTTTCAGTTTACTTCGCTGCAACCTTAGGGATATAAGACTTG
1 CTT-AG-GGAGATAAGAC-TGCTTCTTCAGTCTGCTCCACTGCAACCTCAGGGAGATAAGACCTG
* * * * * * *
6116451 ATACGATCTACTCTACTGCAACTTTAGAGAGATAAGATCTGTTATTCGAATCCGCTCCATTACAG
63 ATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATTCGCTCCACTGCAA
* * * * * * **
6116516 CTTCAGGGAGATGGGATTGCTGGTTTTAATATACTCCACTGCAAACTCAGGGAGATAAGATTCAC
128 CTTCAGGGAGATGTGATTACT-GCTTTAATCTACTCCTCTACAAACTCAGGGAGATAAGATTTGC
6116581 CATCTT
192 CATCTT
6116587 TAGTCTTCCA
Statistics
Matches: 851, Mismatches: 156, Indels: 85
0.78 0.14 0.08
Matches are distributed among these distances:
198 59 0.07
199 87 0.10
200 5 0.01
204 1 0.00
205 1 0.00
206 1 0.00
207 1 0.00
209 3 0.00
210 1 0.00
211 2 0.00
212 1 0.00
215 8 0.01
216 117 0.14
217 278 0.33
218 226 0.27
219 50 0.06
220 10 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (215 bp):
CTTAGGGAGATAAGACTGCTTCTTCAGTCTGCTCCACTGCAACCTCAGGGAGATAAGACCTGATG
CGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATTCGCTCCACTGCAACTT
CAGGGAGATGTGATTACTGCTTTAATCTACTCCTCTACAAACTCAGGGAGATAAGATTTGCCATC
TTCGATCTGCTCCACTACTG
Found at i:6115667 original size:261 final size:261
Alignment explanation
Indices: 6115111--6115681 Score: 632
Period size: 261 Copynumber: 2.2 Consensus size: 261
6115101 ACCTTAGAAT
* * * * * *
6115111 GATAAGATCTGATTCGATCCACTCTACTGCAACTTTAAAGAGATAGGATCTATTATTTGAATCCG
1 GATAAGACCTGATGCGATCCACTCCACGGCAACTTCAAAGAGATAGGATCTATTATTCGAATCCG
* * *
6115176 CTCCACTGCAACTTTAGGGAGATGTAATTACTCGTTTTAATCCACTCCACTGCAAACTCAGGGAG
66 CTCCACTGCAACTTTAGGGAGACGTAATTACTCGCTTTAATCCACTCCACTGCAAACTCAAGGAG
* * *
6115241 ATAAGATTTGTCATCTTCGATCTGCTCCACTACTGCTTAGGGAGAAAAGATCTGCCTTTTCGGTC
131 ATAAGATTTGCCATCTTCGATCTGCTCCACTACCGCTTAGGGAGAAAAGATCTGACTTTTCGGTC
* ** * * * * * * *
6115306 TGCTCTGCTGTAACCTTAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTACAACCTTAGGG
196 TGCGCCACTGCAACCTCAGGGAGATAAGACGTGCATGCTCAGTCTACTCCACTACAACCTTAGGG
6115371 A
261 A
* * * * *
6115372 GATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTCGAATTCG
1 GATAAGACCTGATGCGATCCACTCCACGGCAACTTCAAAGAGATAGGATCTATTATTCGAATCCG
* * * * * * * *
6115437 TTCCACTGTAACTTCT-GGGAGACGTGATTACTGGCTTTAATCTACTGCTCTGCAAATTCAAGGA
66 CTCCACTGCAACTT-TAGGGAGACGTAATTACTCGCTTTAATCCACTCCACTGCAAACTCAAGGA
*
6115501 GATAAGATTTGCCATCTTCGATCTGCTCCACTACCGCTTAGGGAGATAAGATCT-ACTTCTTCGG
130 GATAAGATTTGCCATCTTCGATCTGCTCCACTACCGCTTAGGGAGAAAAGATCTGACTT-TTCGG
* * * *
6115565 TCTGCGCCACTGCAACCTCAGGGAGATAAGACGTG-ATGC-GA-TCTACTCTACTGCAA-CTTCT
194 TCTGCGCCACTGCAACCTCAGGGAGATAAGACGTGCATGCTCAGTCTACTCCACTACAACCTT-A
6115626 GGGA
258 GGGA
* ** * * *
6115630 GATAAGATCTGTTATTTGAATCCACTCCCCGGCAACTTCAAGGAGATGGGAT
1 GATAAGACCTG--ATGCG-ATCCACTCCACGGCAACTTCAAAGAGATAGGAT
6115682 TACTCATTTT
Statistics
Matches: 258, Mismatches: 46, Indels: 12
0.82 0.15 0.04
Matches are distributed among these distances:
257 3 0.01
258 25 0.10
259 1 0.00
260 8 0.03
261 220 0.85
262 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (261 bp):
GATAAGACCTGATGCGATCCACTCCACGGCAACTTCAAAGAGATAGGATCTATTATTCGAATCCG
CTCCACTGCAACTTTAGGGAGACGTAATTACTCGCTTTAATCCACTCCACTGCAAACTCAAGGAG
ATAAGATTTGCCATCTTCGATCTGCTCCACTACCGCTTAGGGAGAAAAGATCTGACTTTTCGGTC
TGCGCCACTGCAACCTCAGGGAGATAAGACGTGCATGCTCAGTCTACTCCACTACAACCTTAGGG
A
Found at i:6115885 original size:913 final size:913
Alignment explanation
Indices: 6114411--6116248 Score: 2423
Period size: 913 Copynumber: 2.0 Consensus size: 913
6114401 TTCAACTTCA
* * * *
6114411 AGGG-GATAAAACTTTCTTTCTCAGTCTGCTCTGCTGCAACATCAGGGAGATAAGACCTGATGCG
1 AGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTACAACATCAGGGAGATAAGACCTGATGCG
* * *
6114475 ATCTACTCTACTGCAACTTCAAAGAGATAGGATCTGTTATTTGAATCTGCTCCTCTACAACTTTA
66 ATCTACTCTACTGCAACTTCAAAGAGATAGGATCTATTATTCGAATCTGCTCCACTACAACTTTA
* * *
6114540 GGGAGATGAGATTACTAGCTTTAATCTACTCCACTACAAACTCAGGGAGATAATATTCACCATAT
131 GGGAGACGAGATTACTAGCTTTAATCTACTCCACTACAAACTCAAGGAGATAAGATTCACCATAT
** ** * * * * *
6114605 TAAATCTGCCCCGTTTTAACTTCAGGGGGTTAAGACTTACTTTTCAGTTTGGTTCGCTGCAACCT
196 TAAATCTGCCCCACTACAACTTCAGGGAGATAAGACTTACTTTTCAGTCTGGTCCACTGCAACCT
* * *
6114670 TAGGGATATAAGACTTGATACGATCTACTCTACTGCAACTTCAGAGAGACAAGATCTGTTATTCG
261 CAGGGAGATAAGACGTGATACGATCTACTCTACTGCAACTTCAGAGAGACAAGATCTGTTATTCG
** ** * ** *
6114735 AATCTGCTCCATTACAACTTCAGGGAGATGGGATTACTGGTTTTAATCTACTCCACTGCAAACTC
326 AATCCACTCCACGACAACTTCAAGGAGATGGGATTACTCATTTTAATCTACTCCACTACAAACTC
* *
6114800 AGGGAGATAAGATTCACCATCGTTAGTCTGCCCACTTCAACTTCAGGGGGATAAGACTTGCTTTC
391 AGGGAGATAAGATTCACCATCGTTAGTCTGCCCACTACAACTTCAGGGAGATAAGACTTGCTTTC
* * * *
6114865 TCAGTCTGCTCCGCTGCAACCTCAAGGAGATAAAACCTGATGCGATGTACTTTACTACAACTTCA
456 TCAGTCTCCTCCCCTGCAACCTCAAGGAGATAAAACATGATGCGATCTACTTTACTACAACTTCA
*
6114930 GAGAGATAGGATCTATTATTTGAATCCGCTCCACAGCAACTTCAGGGAGATGAGATTACTGGCTC
521 GAGAGATAGGATCTATTATTTGAATCCGCTCCACAGCAACTTCAGGGAGATGAGATTACTAGCTC
* * * * **
6114995 TAATCTACTCCACTGCAAACTCAGGGAGATAAGACTT-GCCATATTCGATTTACTCCACTACTGC
586 TAATCTACTCCACTGCAAACTCAGGGAGATAAGA-TTCACCATATTCAATCTACCCCACTACAAC
* *
6115059 TTCAAGGGGATAAGACTTGCTTTCTCATTCTGCTCCGCTGTAACCTTA-GAATGATAAGATCTGA
650 TTCAAGGGGATAAGACTTGCTTTCTCATTCTGCTCCACTGTAACCTTAGGAA-GATAAGACCTGA
* *
6115123 TTCGATCCACTCTACTGCAACTTTAAAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAAC
714 TGCGATCCACTCTACTGCAACTTTAAAGAGATAGGATCTATTATTTGAATACGCTCCACTGCAAC
*
6115188 TTTAGGGAGATGTAATTACTCGTTTTAATCCACTCCACTGCAAACTCAGGGAGATAAGATTTGTC
779 TTTAGGGAGATGTAATTACTCGTTTTAATCCACTCCACTACAAACTCAGGGAGATAAGATTTG-C
*
6115253 -ATCTTCGATCTGCTCCACTACTGCTTAGGGAGAAAAGATCTGCCTT-TTCGGTCTGCTCTGCTG
843 AATCTTCGATCTGCTCCACTACTGCTTAGGGAGAAAAGATCTG-CTTCTTCGATCTGCTCTGCTG
*
6115316 TAACCTT
907 TAACCTC
* *
6115323 AGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTACAACCTTAGGGAGATAAGACCTGATGCG
1 AGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTACAACATCAGGGAGATAAGACCTGATGCG
* * **
6115388 ATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTCGAAT-TCGTTCCACTGTAACTTC
66 ATCTACTCTACTGCAACTTCAAAGAGATAGGATCTATTATTCGAATCT-GCTCCACTACAACTT-
* * * * * * **
6115452 T-GGGAGACGTGATTACTGGCTTTAATCTACTGCTCTGCAAATTCAAGGAGATAAGATTTGCCAT
129 TAGGGAGACGAGATTACTAGCTTTAATCTACTCCACTACAAACTCAAGGAGATAAGATTCACCAT
* ** * ** *
6115516 CTTCGATCTGCTCCACTACCGCTT-AGGGAGATAAGA-TCTACTTCTTCGGTCTGCG-CCACTGC
194 ATTAAATCTGCCCCACTACAACTTCAGGGAGATAAGACT-TACTT-TTCAGTCTG-GTCCACTGC
* * * *
6115578 AACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCTGGGAGATAAGATCTGTT
256 AACCTCAGGGAGATAAGACGTGATACGATCTACTCTACTGCAACTTCAGAGAGACAAGATCTGTT
* * * *
6115643 ATTTGAATCCACTCCCCGGCAACTTCAAGGAGATGGGATTACTCATTTT-ATCTACTCCATTACA
321 ATTCGAATCCACTCCACGACAACTTCAAGGAGATGGGATTACTCATTTTAATCTACTCCACTACA
** * **
6115707 AACTCAGGGAGATAAGATTTGCCATC-TTCGATCTGCTCCACTACTGCTT-AGGGAGATAAGAAC
386 AACTCAGGGAGATAAGATTCACCATCGTTAG-TCTGC-CCACTACAACTTCAGGGAGATAAG-AC
* * *
6115770 -TG-TTTCTTC-TTCTCCTCCCCTTGCAACCTCAGGGAGATAAGACATGATGCGATCTACTTCTA
448 TTGCTTTC-TCAGTCTCCTCCCC-TGCAACCTCAAGGAGATAAAACATGATGCGATCTACTT-TA
* * * * *
6115832 CTGCAACTTCAGAGAGATATGATCTGTTATTTGAATCTGCTCCTCTA-CAACTTCAGGGAGATGA
510 CTACAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCAC-AGCAACTTCAGGGAGATGA
* *
6115896 GATTACTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATATTCAATCTGC
574 GATTACTAGCTCTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATATTCAATCTAC
* * * * * *
6115961 CCCATTTCAACTTCAGGGGGTTAAGACTTGCTTTTTCATTCTGCTCCACTGTAACCTTAGGGAGA
639 CCCACTACAACTTCAAGGGGATAAGACTTGCTTTCTCATTCTGCTCCACTGTAACCTTAGGAAGA
* * * *
6116026 TAAGACCTGATGCGATCTACTCTACTTCAACTTTAGAGAGATAGGATCTATTATTTGAATATGCT
704 TAAGACCTGATGCGATCCACTCTACTGCAACTTTAAAGAGATAGGATCTATTATTTGAATACGCT
* *
6116091 CCACTGCAACTTTAGGGAGATGTGATTACTCGTTTTAATCCACTCTACTACAAACTCAGGGAGAT
769 CCACTGCAACTTTAGGGAGATGTAATTACTCGTTTTAATCCACTCCACTACAAACTCAGGGAGAT
* *
6116156 AAGATTTGCAATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTGCTTCTTCGATCTG
834 AAGATTTGCAATCTTCGATCTGCTCCACTACTGCTTAGGGAGAAAAGATCTGCTTCTTCGATCTG
* *
6116221 TTCTGCTGTAACGTC
899 CTCTGCTGTAACCTC
6116236 AGGGAGATAAGAC
1 AGGGAGATAAGAC
6116249 GTGATACGAT
Statistics
Matches: 799, Mismatches: 110, Indels: 33
0.85 0.12 0.04
Matches are distributed among these distances:
911 16 0.02
912 116 0.15
913 662 0.83
914 5 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (913 bp):
AGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTACAACATCAGGGAGATAAGACCTGATGCG
ATCTACTCTACTGCAACTTCAAAGAGATAGGATCTATTATTCGAATCTGCTCCACTACAACTTTA
GGGAGACGAGATTACTAGCTTTAATCTACTCCACTACAAACTCAAGGAGATAAGATTCACCATAT
TAAATCTGCCCCACTACAACTTCAGGGAGATAAGACTTACTTTTCAGTCTGGTCCACTGCAACCT
CAGGGAGATAAGACGTGATACGATCTACTCTACTGCAACTTCAGAGAGACAAGATCTGTTATTCG
AATCCACTCCACGACAACTTCAAGGAGATGGGATTACTCATTTTAATCTACTCCACTACAAACTC
AGGGAGATAAGATTCACCATCGTTAGTCTGCCCACTACAACTTCAGGGAGATAAGACTTGCTTTC
TCAGTCTCCTCCCCTGCAACCTCAAGGAGATAAAACATGATGCGATCTACTTTACTACAACTTCA
GAGAGATAGGATCTATTATTTGAATCCGCTCCACAGCAACTTCAGGGAGATGAGATTACTAGCTC
TAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATATTCAATCTACCCCACTACAACT
TCAAGGGGATAAGACTTGCTTTCTCATTCTGCTCCACTGTAACCTTAGGAAGATAAGACCTGATG
CGATCCACTCTACTGCAACTTTAAAGAGATAGGATCTATTATTTGAATACGCTCCACTGCAACTT
TAGGGAGATGTAATTACTCGTTTTAATCCACTCCACTACAAACTCAGGGAGATAAGATTTGCAAT
CTTCGATCTGCTCCACTACTGCTTAGGGAGAAAAGATCTGCTTCTTCGATCTGCTCTGCTGTAAC
CTC
Found at i:6116694 original size:416 final size:411
Alignment explanation
Indices: 6115571--6116641 Score: 1026
Period size: 416 Copynumber: 2.5 Consensus size: 411
6115561 TCGGTCTGCG
* * * *
6115571 CCACTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCT-GGGAGATAA
1 CCACTGCAACCTTAGGGAGATAAGACCTGATACGATCTACTCTACTGCAACTT-TAGAGAGATAA
* * * * * ** * *
6115635 GATCTGTTATTTGAATCCACTCCCCGGCAACTTCAAGGAGATGGGATTACTCATTTT-AT-CTAC
65 GATCTATTATTCGAATACGCTCCACTACAACTTCAGGGAGATGGGATTACTCGTTTTAATAC-AC
* ** * * **
6115698 TCCATTACAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGA
129 TCCACTACAAACTCAGGGAGATAAGATTCACAATCTTAGATCT-CTCCACTACACCTTAGGGAGA
* * * * ** * * * *
6115763 TAAGAACTGTTTCTTC-TTCTCCTCCCCTTGCAACCTCAGGGAGATAAGACATGATGCGATCTAC
193 TAAG-A-T-CTTCTGCGATCTCTTCTAC-TGTAACGTCA-GGAGATAAGACATGATACGATCCAC
* * * *
6115827 TTCTACTGCAACTTCAGAGAGATATGATCTGTTATTTGAATCTGCTCCTCTACAACTTCAGGGAG
253 -TCCACAGCAACTTCAGAGAGATAAGATCTGTTATTTTAATCTG---CTC--C-A--T-------
* * *
6115892 ATGAGATTACTAGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATATTCAAT
302 -T---ACTACTAGCTTTAATCTACTCCACTACAAACTCAGGGAGATAAGATTCACCATATTAAAT
* * *
6115957 CTGCCCCATTTCAACTTCAGGGGGTTAAGACTTGCTTTTTCATTCTGCT
363 CTGCCCCATTTCAACTTCAGAGGGTTAAGACTTACTTTTTCATTCTACT
* * * *
6116006 CCACTGTAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTTCAACTTTAGAGAGATAGG
1 CCACTGCAACCTTAGGGAGATAAGACCTGATACGATCTACTCTACTGCAACTTTAGAGAGATAAG
* * * * * *
6116071 ATCTATTATTTGAATATGCTCCACTGCAACTTTAGGGAGATGTGATTACTCGTTTTAATCCACTC
66 ATCTATTATTCGAATACGCTCCACTACAACTTCAGGGAGATGGGATTACTCGTTTTAATACACTC
* ** * **
6116136 TACTACAAACTCAGGGAGATAAGATTTGCAATCTTCGATCTGCTCCACTACTGCTTAGGGAGATA
131 CACTACAAACTCAGGGAGATAAGATTCACAATCTTAGATCT-CTCCACTACACCTTAGGGAGATA
* * * * * * *
6116201 GGATCTGCTTCTTCGATCTGTTCTGCTGTAACGTCAGGGAGATAAGACGTGATACGATCTACTCT
195 AGA--T-CTTCTGCGATCTCTTCTACTGTAACGTCA-GGAGATAAGACATGATACGATCCACTCC
6116266 ACAGCAACTTCAGAGAGATAAGATCTGTTATTTTAATCTGCTCCATTACTACTAGCTTTAATCTA
256 ACAGCAACTTCAGAGAGATAAGATCTGTTATTTTAATCTGCTCCATTACTACTAGCTTTAATCTA
*
6116331 CTCCACTACAAACTCAGGGAGATAATATTCACCATATTAAATCTGCCCCATTTCAACTTCAGAGG
321 CTCCACTACAAACTCAGGGAGATAAGATTCACCATATTAAATCTGCCCCATTTCAACTTCAGAGG
6116396 GTTAAGACTTACTTTTTCAGTT-TACT
386 GTTAAGACTTACTTTTTCA-TTCTACT
* * * *
6116422 TCGCTGCAACCTTAGGGATATAAGACTTGATACGATCTACTCTACTGCAACTTTAGAGAGATAAG
1 CCACTGCAACCTTAGGGAGATAAGACCTGATACGATCTACTCTACTGCAACTTTAGAGAGATAAG
* * * * * * *
6116487 ATCTGTTATTCGAATCCGCTCCATTACAGCTTCAGGGAGATGGGATTGCTGGTTTTAATATACTC
66 ATCTATTATTCGAATACGCTCCACTACAACTTCAGGGAGATGGGATTACTCGTTTTAATACACTC
* * *
6116552 CACTGCAAACTCAGGGAGATAAGATTCACCATCTTTAG-TCT-TCCAACTTCAACCTTAGGGAGA
131 CACTACAAACTCAGGGAGATAAGATTCACAATC-TTAGATCTCTCC-ACTAC-ACCTTAGGGAGA
6116615 TAAGA-CTTCATGCGATCTACTT-TACTG
193 TAAGATCTTC-TGCGATCT-CTTCTACTG
6116642 CTACTTTAGA
Statistics
Matches: 551, Mismatches: 74, Indels: 44
0.82 0.11 0.07
Matches are distributed among these distances:
412 4 0.01
413 11 0.02
414 5 0.01
415 4 0.01
416 253 0.46
417 5 0.01
419 1 0.00
427 1 0.00
429 1 0.00
430 1 0.00
432 3 0.01
434 1 0.00
435 144 0.26
436 110 0.20
437 7 0.01
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (411 bp):
CCACTGCAACCTTAGGGAGATAAGACCTGATACGATCTACTCTACTGCAACTTTAGAGAGATAAG
ATCTATTATTCGAATACGCTCCACTACAACTTCAGGGAGATGGGATTACTCGTTTTAATACACTC
CACTACAAACTCAGGGAGATAAGATTCACAATCTTAGATCTCTCCACTACACCTTAGGGAGATAA
GATCTTCTGCGATCTCTTCTACTGTAACGTCAGGAGATAAGACATGATACGATCCACTCCACAGC
AACTTCAGAGAGATAAGATCTGTTATTTTAATCTGCTCCATTACTACTAGCTTTAATCTACTCCA
CTACAAACTCAGGGAGATAAGATTCACCATATTAAATCTGCCCCATTTCAACTTCAGAGGGTTAA
GACTTACTTTTTCATTCTACT
Found at i:6116927 original size:218 final size:217
Alignment explanation
Indices: 6116601--6117018 Score: 579
Period size: 218 Copynumber: 1.9 Consensus size: 217
6116591 CTTCCAACTT
* * * * * * * * *
6116601 CAACCTTAGGGAGATAAGACTTCATGCGATCTACTTTACTGCTACTTTAGAGATATTGTATCTAT
1 CAACCTTAGAGAGATAAGACCTCATGCGATCTACTCTACAGCAACTTCAGAGAGATAGGATCTAT
* * * *
6116666 TATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATGTACTCCACTGC
66 TATTTGAATCCGCTCCACTGCAAATTCAGGAAGACGGGATTACTGGCTTTAATCTACTCCACTGC
* * * * * *
6116731 AAACTTAGGTTA-ATAAGATTTGCCATTTTCGATCTGCTCCACTACTGTTTCAAGGGGATAAGA-
131 AAACTCAAG-CAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTT-AAGGAGATAAGAT
6116794 CTTGCTTTCTCAGTTTGCTCCGCTA
194 C-TGCTTTCTCAGTTTGCTCCGCTA
*
6116819 CAACCTTAGAGAGATAAGACCTGATGCGATCTACTCTACAGCAACTTCAGAGAGATAGGATCTAT
1 CAACCTTAGAGAGATAAGACCTCATGCGATCTACTCTACAGCAACTTCAGAGAGATAGGATCTAT
* * * *
6116884 TATTTGAATTCGTTCCGCTGCAAATTTAGGAAGACGGGATTACTGGCTTTAATCTACTCCACTGC
66 TATTTGAATCCGCTCCACTGCAAATTCAGGAAGACGGGATTACTGGCTTTAATCTACTCCACTGC
6116949 AAACTCAAGCAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCT
131 AAACTCAAGCAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCT
6117014 GCTTT
196 GCTTT
6117019 TTCGGTCTGC
Statistics
Matches: 174, Mismatches: 24, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
217 18 0.10
218 156 0.90
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (217 bp):
CAACCTTAGAGAGATAAGACCTCATGCGATCTACTCTACAGCAACTTCAGAGAGATAGGATCTAT
TATTTGAATCCGCTCCACTGCAAATTCAGGAAGACGGGATTACTGGCTTTAATCTACTCCACTGC
AAACTCAAGCAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCT
GCTTTCTCAGTTTGCTCCGCTA
Found at i:6117553 original size:217 final size:218
Alignment explanation
Indices: 6117162--6124674 Score: 7803
Period size: 217 Copynumber: 34.6 Consensus size: 218
6117152 NNNNNNNNNN
* * *
6117162 TTTCTCAGTCTGCTCTGCTGCAACATCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * * * *
6117227 TTCAAAGAGATAGGATCTGTTATTTGAATCTGCTCCTCTACAACTTTAGGGAGATGAGATTACTA
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * * ** * *
6117292 GCTTTAATCTACTCCACTACAAACTCAGGGAGATAATATTCACCATATTAAATCTGCCCCATTTT
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCATTCT
* *
6117357 AACTTCAGGGGGTTAAGACTTAC
196 AACTTCAGGGGGATAAGACTTGC
* * * * * *
6117380 TTT-TCAGTTTGGTTCGCTGCAACCTTAGGGATATAAGACTTGATACGATCTACTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * *
6117444 TTCAGAGAGACAAGATCTGTTATTCGAATCTGCTCCATTACAACTTCAGGGAGATGGGATTACTG
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * *
6117509 GTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCGTTAG-TCTGC-CCACTT
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATC-TTCGATCTGCTCCA-TT
6117572 C-AACTTCAGGGGGATAAGACTTGC
194 CTAACTTCAGGGGGATAAGACTTGC
* * *
6117596 TTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACTTGATGCGATCTACTCTACTGCTAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* ** * *
6117661 ATCAGAGAGATTGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * * * *
6117726 GCTTTAATCTACTTCACTGCAAACTTAGGGTGATAAGATTTACCATTTTAGATCTGCTCCACTAC
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCA-TTC
*
6117791 T-ACTTCAAGGGGATAAGACTTGC
195 TAACTTCAGGGGGATAAGACTTGC
* * * *
6117814 TTTCTCATTCTGCTCCGCTGTAACCCTAGGGAGATTAGACCTGATGCGATCTACTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * ** * * *
6117879 TTCAGAGAGATAGGATCTATTATTTGAATCCACTCCATCTGTAACTTTAGGGAGATGTGATTACT
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCA-CTGCAACTTCAGGGAGATGGGATTACT
* * * * * * *
6117944 CGTTTTAATCCACTCCACCGCAAACTCAGGGAGATAAGATTTTCCATCTTCGATCTGGTCCACTA
130 GGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCA-TT
* *
6118009 CT-GCTT-AGGGAGATAAGA-TCTGC
194 CTAACTTCAGGGGGATAAGACT-TGC
* ** * ** * *
6118032 TTTTTCAGTCTGCTATGCTGTAACCAAAGGGAGATAAGACGTGATGTGATCTACTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * *
6118097 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTTCATTGCAACTTCAGGGAGATGGGGTTCCTG
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * * * * * *
6118162 GATTTAATGTACCCCACTGCAAACTCAGGGAGATAAAATTCACCATATT-TAGTCTGC-CTACTT
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGA-TCTGCTCCA-TT
* *
6118225 C-AACTTCAGGGAGATAAGACTTAC
194 CTAACTTCAGGGGGATAAGACTTGC
* * * * * **
6118249 TTTCTCTGTCTGCTCTGCTGCAACCTCAAGGAGATAAGACCTGATGCGATGTACTCTACAACAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * **
6118314 TTCAGAGAGATAGGATCTGTTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTACTG
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * *
6118379 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGATCTACTCCACTAC
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCA-TTC
* *
6118444 T-GCTTCAAGGGGATAAGACTTGC
195 TAACTTCAGGGGGATAAGACTTGC
* * * * *
6118467 TTTCTCATTCTGCTCCGCTGTAACCTTAGGGAGATAAGATCTGATTCGATCCACTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * * * * * *
6118532 TTTAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGTAACTTTAGTGAGATGTGATTACTC
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * * * *
6118597 GTTTTAATCCACTCCACTGCAAACTCTGGGAGATAAGATTTGCCATCTTCGATCTACTCCACTAC
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCA-TTC
* * * * *
6118662 T-GCTT-AGGGAGA-AAAAATCTAC
195 TAACTTCAGGGGGATAAGACT-TGC
* * ** * * ** *
6118684 TTTTTCGGTCTGCTCTTCTGTAACCTTAGGGAGATAAGACTTGATTTGATCTAGTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* ** * * *
6118749 TTGAGAGAGATTGGATCTTTTATTTGAACCTGCTCCACTGCAACTTTAGGGAGATGGGATTACTG
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * * * *
6118814 GCTTTAATCTACTCCACTGCAAACTTAAGGTGATAAGATTTGCCTTTTTCGATCTGCTCCA--CT
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCATTCT
*
6118877 AATGCTTCATGGGGATAAGACTTGC
196 AA--CTTCAGGGGGATAAGACTTGC
* *
6118902 TTTCTCAGTCTGCTCCGCTACAACCTTAGGGTGATAAGACCTGATGCGATCTACTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * *
6118967 TTCAGAGAGATAAGATCTATTATTCGAAT-TCGTTCCACTGTAACTTTAGGGAGATGGGATTACT
66 TTCAGAGAGATAAGATCTGTTATTTGAATCT-GCTCCACTGCAACTTCAGGGAGATGGGATTACT
* ** *
6119031 GGCTTTAATCTACTCCACTGTAAACTCAATGAGATAAGATTTGCCATCTTCGATCTGCTCCA--C
130 GGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCATTC
* *
6119094 TACCGCTT-AGGGAGATAAGA-TCTGC
195 TA--ACTTCAGGGGGATAAGACT-TGC
* * * *
6119119 -TTCTTCGGTCTGCTCCGCTACAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAA
1 TTTC-TCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAA
* * * * * * *
6119183 CTTCAGGGAGAT-AGATCTATTATTCGAAT-TCGTTCCATTGTAACTTCAGGGAGACGGGATTAC
65 CTTCAGAGAGATAAGATCTGTTATTTGAATCT-GCTCCACTGCAACTTCAGGGAGATGGGATTAC
* * * *
6119246 TGGCTTTAATCTACTCCTCTGCAAACTCAAGGAGATAAGATTTTCCATTTTCGATCTGCTCCA--
129 TGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCATT
* * * *
6119309 CTACCGCTT-AAGGAGATAAGACCTGC
194 CTA--ACTTCAGGGGGATAAGACTTGC
* * *
6119335 -TTCTTCGGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAA
1 TTTC-TCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAA
* **
6119399 CTTCAGGGAGATAAGATCTGTTATTTGAATCCACTCCACTGCAACTTCAGGGAGATGGGATTACT
65 CTTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACT
*** * * *
6119464 CATTTTAATCTACTCCATTACAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCC--TC
130 GGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCATTC
* *
6119527 T-ACTGCTTAGGGAGATAAGAAC-TGC
195 TAACT--TCAGGGGGATAAG-ACTTGC
* * * * *
6119552 -TTCTTCGGTCTGCTCCGCTGTAACCTCAGGGGGATAAGACATGATGCGATCTACTCTACTGCAA
1 TTTC-TCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAA
* * * *
6119616 CTTCAGAGAGATATGATCTGTTATTTGAATCTGCTCCTCTACAACTTCAGGGAGATGAGATTACT
65 CTTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACT
* * * * *
6119681 AGCTTTAATCTACTCCACTGCAAACTCAGGGGAGATAAGATTCACCATATTCAATCTGCCCCCAT
130 GGCTTTAATCTACTCCACTGCAAACTCA-GGGAGATAAGATTTACCATCTTCGATCTG-CTCCAT
* *
6119746 T-TCAACTTCAGGGGGATAAGACATAC
193 TCT-AACTTCAGGGGGATAAGACTTGC
* * * * * * *
6119772 TTTTTCAGTTTGCTTCGCTGCAACCTTAGGGATATAAGACTTGATACGATCTACTCTACTACAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * *
6119837 TTCAGAGAGATAAGATCTGTTATTCGAATCCGCTCCATTACAACTTCAGGGAGATGGGATTACTG
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * * * *
6119902 GTTTTAATCTACTCCACTGAAAACCCAGGGAGATAAGATTCACCATCTT-TATTCTGC-CTATT-
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGA-TCTGCTCCATTC
* *
6119964 TCAACTTCAAGGAGATAAGACTTGC
195 T-AACTTCAGGGGGATAAGACTTGC
* * * * * * *
6119989 TTTCTCTGTCTGCTCTGCTGCAACCTCAAGGAGATAAGACCTAATGCGATGTACTCTACTACAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * *
6120054 TTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTG
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * * *
6120119 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAATATTTGCCATATTCGATCTACTCCACTAC
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCA-TTC
* *
6120184 T-GCTTCA-AGGGATAAGACTTGC
195 TAACTTCAGGGGGATAAGACTTGC
* *
6120206 TTTCTCATTCTGCTCCGCTGTAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * * * *
6120271 TTCAGAGAGATAGGGTCTATTATTTGAATCTGCTCCACTGCAACTTTAAGGAGATGTGATTACTC
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * * *
6120336 GTTTTAAT-TCAGTCCACTGCAAACTCAGGTAGATAAGATTTGCCATCTTCGATCTGCTCCACTA
131 GCTTTAATCT-ACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCA-TT
* *
6120400 CT-GCTT-AGGGAGATAAGA-TCTGC
194 CTAACTTCAGGGGGATAAGACT-TGC
* * * * * *
6120423 TTTTTCAGTCTGCTCTGCTGTAACCTCAGGGAGATAAGACGTGATGTGATCTACTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * *
6120488 TTCAGAGAGATAAGATCTGCTATTTGAATATGCTCCATTGCAACTTCAGGGAGATGGGATTACTG
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * * * * *
6120553 GCGTTAATTTACCCCACTACAAACTCAGGGAGATAAGATTCACCATCTTCGATCTACTCCACTAC
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCA-TTC
*
6120618 T-GCTTC-GAGGGGATAAGACTTGC
195 TAACTTCAG-GGGGATAAGACTTGC
* * *
6120641 TTTC-CATTCTGCTCCGCTGTAACCTAAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * *
6120705 TTTAGAGAGATAGGATCTATTATTTGAATCTGCTCCACTGCAACTTTAGGGAGATGTGATTAC-G
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * * * *
6120769 CGTTTTAATCCACTCCACTGCAACCTCAGGGAGATAATATTTGCCATCTTCGATCTGCTCCACTA
131 -GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCA-TT
* * *
6120834 CT-CCTT-AGGGAGATAAGATTTGC
194 CTAACTTCAGGGGGATAAGACTTGC
* * * * * * * *
6120857 TTTTTCGGTTTCCTCTGCTGTAACCTTAGGGAGATAAGACGTGATGTGATCTACTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * *
6120922 TTCAAAGAGATAAGATCTGTTATTTGAATCTGCTCTATTGCTACTTCAGGGAGATAGGATTACTG
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * * * *
6120987 GATTTAATTTACCCCACTACAAACTCAGGGAGATAAGATTCACCATTTTC-AGTCTGC-CCTACT
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGA-TCTGCTCC-A-T
* *
6121050 T-TAACTTCATGGGGATAAGACTTTC
193 TCTAACTTCAGGGGGATAAGACTTGC
* * * * *
6121075 TTTCTAAGTCTGCTCCGCTGCAACATCAGGGAGATAAGACCTGATACGATCTTCTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * *
6121140 TTTAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGCAACCTCAGGGAGATGGGATTACTC
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * * *
6121205 GTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATATTCAATCTGCCCCATT-T
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCATTCT
*
6121269 CAACTTCAGGGGGTTAAGACTTGC
196 -AACTTCAGGGGGATAAGACTTGC
* * * * * * * * * *
6121293 TTTTTCAGTTTGCTTCGTTGCAACCTTAGGGACATAAGACTTGATACGATTTACTCAACTACAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * ** *
6121358 TTCAGAGAGATAAGATCTGTTACTCGAATCCGCTCCGTTACAACTTCAGGGAGATGGGATTACTG
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* *
6121423 GTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTC-AGTCTGC-CCAACT
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGA-TCTGCTCC-A-T
* *
6121486 TC-AACTTCAAGGGGATAAGACTTTC
193 TCTAACTTCAGGGGGATAAGACTTGC
* * * ** * * * * *
6121511 TTTCTAAGTCTGCTCCGCTACAACATCGGGGAGATAAGACTTAATGCGATGTACTCTACTACAGC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * *
6121576 TTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTG
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * * *
6121641 GCTTTAATCTACTCCACTGCAAACTTAGGGAGATAAGATTTGCCATATTCGATCTACTCCACTAC
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCA-TTC
* *
6121706 T-GCTTCAAGGGGATAAGACTTGC
195 TAACTTCAGGGGGATAAGACTTGC
* * * * *
6121729 TTTCTCATTCTGCTCCGCTGTAACCTTAGGGAGATAAGATCTGATTCGATCCACTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * * * * * *
6121794 TTTAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGTAACTTTAGTGAGATGTGATTACTC
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * * * *
6121859 GTTTTAATCCACTCCACTGCAAACTCTGGGAGATAAGATTTGCCATCTTCGATCTACTCCACTAC
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCA-TTC
* * * * *
6121924 T-GCTT-AGGGAGA-AAAAATCTAC
195 TAACTTCAGGGGGATAAGACT-TGC
* * ** * * ** *
6121946 TTTTTCGGTCTGCTCTTCTGTAACCTTAGGGAGATAAGACTTGATTTGATCTAGTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* ** * * *
6122011 TTGAGAGAGATTGGATCTTTTATTTGAACCTGCTCCACTGCAACTTTAGGGAGATGGGATTACTG
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * * * *
6122076 GCTTTAATCTACTCCACTGC-AACTTAAGGTGATAAGATTTGCCTTTTTCGATCTGCTCCA--CT
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCATTCT
*
6122138 AATGCTTCATGGGGATAAGACTTGC
196 AA--CTTCAGGGGGATAAGACTTGC
* *
6122163 TTTCTCAGTCTGCTCCGCTACAACCTTAGGGTGATAAGACCTGATGCGATCTACTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * *
6122228 TTCAGAGAGATAAGATCTATTATTCGAAT-TCGTTCCACTGTAACTTTAGGGAGATGGGATTACT
66 TTCAGAGAGATAAGATCTGTTATTTGAATCT-GCTCCACTGCAACTTCAGGGAGATGGGATTACT
* ** *
6122292 GGCTTTAATCTACTCCACTGTAAACTCAATGAGATAAGATTTGCCATCTTCGATCTGCTCCA--C
130 GGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCATTC
* *
6122355 TACCGCTT-AGGGAGATAAGA-TCTGC
195 TA--ACTTCAGGGGGATAAGACT-TGC
* * * *
6122380 -TTCTTCGGTCTGCTCCGCTACAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAA
1 TTTC-TCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAA
* * * * *
6122444 CTTCAGGGAGATAAGATCTGTTATTTGAATCCT-CTCGACTGCAACTTTAGGGAGATAGGATTAT
65 CTTCAGAGAGATAAGATCTGTTATTTGAAT-CTGCTCCACTGCAACTTCAGGGAGATGGGATTAC
*** * * * * *
6122508 TCATTTTAATCTACTCCATTACAAATTCAGGGAGATAAGATTTGCCATCTTCAATCTGCTCCACT
129 TGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCA-T
* * *
6122573 ACT-GCTT-AGGGAGATAAGA-TCTGC
193 TCTAACTTCAGGGGGATAAGACT-TGC
* * * * *
6122597 -TTCTTCGGTCTGCTCTGCTGTAA-CTTCAGGGAGATAAGACGTGATGCGATCTACTCTATTGCA
1 TTTC-TCAGTCTGCTCCGCTGCAACCTT-AGGGAGATAAGACCTGATGCGATCTACTCTACTGCA
* * * * *
6122660 ACTTTAGAGAGATATGATCTGTTATTTGAATCTGCTCCTCTACAACTTCAGGGAGATGAGATTAC
64 ACTTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTAC
* * * * * * *
6122725 TAGCTTTAATCTACTCCACTGCAAACTTAGGGAGATAAGATTCACCATATTCAATCTACCCCATT
129 TGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCATT
* * *
6122790 -TCAACTTTAGGGGGTTAAGACTTGT
194 CT-AACTTCAGGGGGATAAGACTTGC
* * * * * * * * * *
6122815 TTTTTCAGTTTGCTTCGTTGCAACCTTAGGGACATAAGACTTGATACGATTTACTCAACTACAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * *
6122880 TTCAGAGAGATAAGATCTGTTATTCGAATCCGCTCCATTACAGCTTCAGGGAGATGGGATTACTG
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * * *
6122945 GTTTTAAT-TCACTCCACTGCAAACTCAGGGATATAAGACTCACCATCTT-TAGTCTGC-CCACT
131 GCTTTAATCT-ACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGA-TCTGCTCCA-T
* * *
6123007 GC-AACTTCAAGGGGATAAGACTTGT
193 TCTAACTTCAGGGGGATAAGACTTGC
* * * * *
6123032 TTTCTCAGTCTGCTCCACTGCAACCTCAAGGAGATAAGACCTGATGCGATGTACTCTACTACAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * * *
6123097 TACAGAGAGATAGGATCTATTATTTGAATCTGCTACATTGCAACTTCTGGGAGATGGGATTACTG
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * * * *
6123162 GCTTTAATTTACCCCATTGCAAACTCAGGGAGATAAGATTCAGCATATTC-AGTCTG-TCCTACT
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGA-TCTGCTCC-A-T
* *
6123225 TC-AACTTCAAGGGGATAAGACTTTC
193 TCTAACTTCAGGGGGATAAGACTTGC
* * *
6123250 TTTCTCAGTCTGCTCCGCTGTAACCTTAGCGAGATAAGACCTGATGCGATCTACTTTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * * * * * *
6123315 TTTAGAGAGATAGGATCTATAATTTGAATCTGCTCCACTGTAACTTTAGGGAGACGGGCTCACTG
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * *
6123380 GCTTTAATCTATTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTAC
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCA-TTC
* *
6123445 T-GCTT-AGGGAGATAAGA-TCTGC
195 TAACTTCAGGGGGATAAGACT-TGC
* * * * * * *
6123467 TTTATCAGTCTGCTCTGATGTAACCTCAGGGAGATAAGACGTGATGTGATCTACTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* *
6123532 TTCAGAGAGATAAGATCTGTTATTTGAATCTTCTCCATTGCAACTTCAGGGAGATGGGATTACTG
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * * * *
6123597 GTTTTAATTTACCCCACCGCAAACTCAGAGAGATAAGATTCACCATCTTC-AGTCTGC-CCTACT
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGA-TCTGCTCC-A-T
* *
6123660 TC-AACTTCAAGGGGATAAGACTTTC
193 TCTAACTTCAGGGGGATAAGACTTGC
* * * * **
6123685 TTTCTAAGTCTACTCCGCTACAACATCGGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * * * *
6123750 TTCAGAGAGATATGATCTATTATTTGAATCTGCTTCTCTACAACTTCAGGGAGATGAGATTACTA
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * * * *
6123815 GCTTTAATCTACTCCACTACAAACTCAGGGAGATAATATTCACCATATTCAATCTGCCCCACTTC
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCA-TTC
* * *
6123880 -AACTTCAGGGGGTTCAGACTTAC
195 TAACTTCAGGGGGATAAGACTTGC
* * * * * *
6123903 TTTTTCAGTTTGCTTCGCTGCAACCTTAGGGATATAAGACTTGATACGATCTACTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * * *
6123968 TTCAGAGAGATAAGACCTGTTATTCGAATCCGCTCCATTACAACTTCAGGGAGATGGGATTTCTG
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * * * *
6124033 GTTTTAATCTACTCCACTACAAACTCAGGAAGATAAGATTCACCATCTT-TAGTTTGC-CCACTT
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGA-TCTGCTCCA-TT
*
6124096 C-AACTTCAAGGGGATAAGACTTGC
194 CTAACTTCAGGGGGATAAGACTTGC
* * * * * *
6124120 TTTCTCATTCTGCTCCGCTGTAACCTCAAGGAGATAATACCTGATGCGATCTACTCTACTGCTAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
** * * * * * *
6124185 TTCAGAGAGATTGGATCTATTATATGAATCCGCTCCACTGTAACTTAAGGGAGATGGGATTGCTG
66 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * *
6124250 GCTTTAATCTACTCCACTGCAAACTTA-GGATGATAAGATTTGCCATATTCGATCTGCTCCACTA
131 GCTTTAATCTACTCCACTGCAAACTCAGGGA-GATAAGATTTACCATCTTCGATCTGCTCCA-TT
* * *
6124314 CT-GCTTCAAGTGGATAAGACTTGC
194 CTAACTTCAGGGGGATAAGACTTGC
* * * *
6124338 TTTCTCAATCTCCTCCGCTACAACCTTAGGGAGATAAGACCTGATGCGATATACTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * * * * *
6124403 TTCAGAGAGATAGGATGTATTATTTGAAT-TCGTTCCGCTGCAAATTTAGGGAGACGGGATTACT
66 TTCAGAGAGATAAGATCTGTTATTTGAATCT-GCTCCACTGCAACTTCAGGGAGATGGGATTACT
* * ** *
6124467 GGCCTTAATCTACTCCACTGCAAACTCAAGGAGATAAGATTTGTCATCTTCGATCTGCTCCACTA
130 GGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCA-TT
* *
6124532 CT-GCTT-AGGGAGATAAGA-TATGC
194 CTAACTTCAGGGGGATAAGACT-TGC
* * *
6124555 -TTCTTCGGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAA
1 TTTC-TCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAA
* *
6124619 CTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGTAACTTCAGGGAGAT
65 CTTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGAT
6124675 AAGATTTCCC
Statistics
Matches: 6194, Mismatches: 975, Indels: 253
0.83 0.13 0.03
Matches are distributed among these distances:
213 2 0.00
214 4 0.00
215 1 0.00
216 337 0.05
217 3220 0.52
218 2329 0.38
219 145 0.02
220 150 0.02
221 3 0.00
222 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (218 bp):
TTTCTCAGTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCTTCGATCTGCTCCATTCT
AACTTCAGGGGGATAAGACTTGC
Found at i:6118489 original size:435 final size:436
Alignment explanation
Indices: 6117162--6124674 Score: 8269
Period size: 435 Copynumber: 17.3 Consensus size: 436
6117152 NNNNNNNNNN
* *
6117162 TTTCTCAGTCTGCTCTGCTGCAACATCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * * * * *
6117227 TTCAAAGAGATAGGATCTGTTATTTGAATCTGCTCCTCTACAACTTTAGGGAGATGAGATTACTA
66 TTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * ** * ** * **
6117292 GCTTTAATCTACTCCACTACAAACTCAGGGAGATAATATTCACCATATTAAATCTGCCCCA-TTT
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATTTTCGATCTGCTCCACTAC
* * * * * * *
6117356 TAACTTCAGGGGGTTAAGACTTACTTT-TCAGTTTGGT-TCGCTGCAACCTTAGGGATATAAGAC
196 T-ACTTCAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCT-GCTGCAACCTCAGGGAGATAAGAC
* * * * * * *
6117419 TTGATACGATCTACTCTACTGCAACTTCAGAGAGACAAGATCTGTTATTCGAATCTGCTCCATTA
259 CTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTG
*
6117484 CAACTTCAGGGAGATGGGATTACTGGTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATT
324 CAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATT
* * ** *
6117549 CACCATCGTTAG-TCTGC-CCACTTCAACTTCAGGGGGATAAGACTTGC
389 CACCATC-TTCGATCTGCTCCACTACTGCTTCAAGGGGATAAGACTTGC
* *
6117596 TTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACTTGATGCGATCTACTCTACTGCTAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* *
6117661 ATCAGAGAGATTGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
66 TTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * * *
6117726 GCTTTAATCTACTTCACTGCAAACTTAGGGTGATAAGATTTACCATTTTAGATCTGCTCCACTAC
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATTTTCGATCTGCTCCACTAC
* * * *
6117791 TACTTCAAGGG-GATAAGACTTGCTTTCTCATTCTGCTCCGCTGTAACC-CTAGGGAGATTAGAC
196 TACTTC-AGGGAGATAAGACTTGCTTTCTCAGTCTGCTCTGCTGCAACCTC-AGGGAGATAAGAC
* * *
6117854 CTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCACTCCATCT
259 CTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCA-CT
* * * * * * *
6117919 GTAACTTTAGGGAGATGTGATTACTCGTTTTAATCCACTCCACCGCAAACTCAGGGAGATAAGAT
323 GCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGAT
** *
6117984 TTTCCATCTTCGATCTGGTCCACTACTGCTT--AGGGAGATAAGA-TCTGC
388 TCACCATCTTCGATCTGCTCCACTACTGCTTCAAGGG-GATAAGACT-TGC
* ** * ** * *
6118032 TTTTTCAGTCTGCTATGCTGTAACCAAAGGGAGATAAGACGTGATGTGATCTACTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * * * *
6118097 TTCAGAGAGATAAGATCTGTTATTTGAATCTGCTTCATTGCAACTTCAGGGAGATGGGGTTCCTG
66 TTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * * ** * * *
6118162 GATTTAATGTACCCCACTGCAAACTCAGGGAGATAAAATTCACCATATTTAG-TCTGC-CTACTT
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCAT-TTTCGATCTGCTCCACTA
* * * *
6118225 CAACTTCAGGGAGATAAGACTTACTTTCTCTGTCTGCTCTGCTGCAACCTCAAGGAGATAAGACC
195 CTACTTCAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCTGCTGCAACCTCAGGGAGATAAGACC
* ** *
6118290 TGATGCGATGTACTCTACAACAACTTCAGAGAGATAGGATCTGTTATTTGAATCCGCTCCACTGC
260 TGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGC
** *
6118355 AACTTCAGGGAGATAAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTT
325 AACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTC
* * *
6118420 GCCATATTCGATCTACTCCACTACTGCTTCAAGGGGATAAGACTTGC
390 ACCATCTTCGATCTGCTCCACTACTGCTTCAAGGGGATAAGACTTGC
* * * * * *
6118467 TTTCTCATTCTGCTCCGCTGTAACCTTAGGGAGATAAGATCTGATTCGATCCACTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * * *
6118532 TTTAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGTAACTTTAGTGAGATGTGATTACTC
66 TTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * * *
6118597 GTTTTAATCCACTCCACTGCAAACTCTGGGAGATAAGATTTGCCATCTTCGATCTACTCCACTAC
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATTTTCGATCTGCTCCACTAC
* * * * * * * * * *
6118662 TGCTT-AGGGAGA-AAAAATCTACTTTTTCGGTCTGCTCTTCTGTAACCTTAGGGAGATAAGACT
196 TACTTCAGGGAGATAAGACT-TGCTTTCTCAGTCTGCTCTGCTGCAACCTCAGGGAGATAAGACC
** * * ** *
6118725 TGATTTGATCTAGTCTACTGCAACTTGAGAGAGATTGGATCTTTTATTTGAA-CCTGCTCCACTG
260 TGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCC-GCTCCACTG
* * * *
6118789 CAACTTTAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTTAAGGTGATAAGATT
324 CAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATT
** * * * *
6118854 TGCCTTTTTCGATCTGCTCCACTAATGCTTCATGGGGATAAGACTTGC
389 CACCATCTTCGATCTGCTCCACTACTGCTTCAAGGGGATAAGACTTGC
* * *
6118902 TTTCTCAGTCTGCTCCGCTACAACCTTAGGGTGATAAGACCTGATGCGATCTACTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * * *
6118967 TTCAGAGAGATAAGATCTATTATTCGAATTCGTTCCACTGTAACTTTAGGGAGATGGGATTACTG
66 TTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* ** *
6119032 GCTTTAATCTACTCCACTGTAAACTCAATGAGATAAGATTTGCCATCTTCGATCTGCTCCACTAC
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATTTTCGATCTGCTCCACTAC
** * * *
6119097 CGCTT-AGGGAGATAAGA-TCTGC-TTCTTCGGTCTGCTCCGCTACAACCTCAGGGAGATAAGAC
196 TACTTCAGGGAGATAAGACT-TGCTTTC-TCAGTCTGCTCTGCTGCAACCTCAGGGAGATAAGAC
* * * * * * *
6119159 GTGATGCGATCTACTCTACTGCAACTTCAGGGAGAT-AGATCTATTATTCGAATTCGTTCCATTG
259 CTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTG
* * * *
6119223 TAACTTCAGGGAGACGGGATTACTGGCTTTAATCTACTCCTCTGCAAACTCAAGGAGATAAGATT
324 CAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATT
** * * * *
6119288 TTCCATTTTCGATCTGCTCCACTACCGCTT-AAGGAGATAAGACCTGC
389 CACCATCTTCGATCTGCTCCACTACTGCTTCAAGGGGATAAGACTTGC
* *
6119335 -TTCTTCGGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAA
1 TTTC-TCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAA
* * * *
6119399 CTTCAGGGAGATAAGATCTGTTATTTGAATCCACTCCACTGCAACTTCAGGGAGATGGGATTACT
65 CTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACT
*** * * * *
6119464 CATTTTAATCTACTCCATTACAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCTCTA
130 GGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATTTTCGATCTGCTCCACTA
* * * * *
6119529 CTGCTT-AGGGAGATAAGAAC-TGC-TTCTTCGGTCTGCTCCGCTGTAACCTCAGGGGGATAAGA
195 CTACTTCAGGGAGATAAG-ACTTGCTTTC-TCAGTCTGCTCTGCTGCAACCTCAGGGAGATAAGA
* * * *
6119591 CATGATGCGATCTACTCTACTGCAACTTCAGAGAGATATGATCTGTTATTTGAATCTGCTCCTCT
258 CCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACT
* * *
6119656 ACAACTTCAGGGAGATGAGATTACTAGCTTTAATCTACTCCACTGCAAACTCAGGGGAGATAAGA
323 GCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCA-GGGAGATAAGA
* * * * * ** * * *
6119721 TTCACCATATTCAATCTGCCCCCATTTCAACTTCAGGGGGATAAGACATAC
387 TTCACCATCTTCGATCTG-CTCCACTACTGCTTCAAGGGGATAAGACTTGC
* * * * * * * *
6119772 TTTTTCAGTTTGCTTCGCTGCAACCTTAGGGATATAAGACTTGATACGATCTACTCTACTACAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * *
6119837 TTCAGAGAGATAAGATCTGTTATTCGAATCCGCTCCATTACAACTTCAGGGAGATGGGATTACTG
66 TTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * ** * *
6119902 GTTTTAATCTACTCCACTGAAAACCCAGGGAGATAAGATTCACCATCTTT--ATTCTGC-CTATT
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCAT-TTTCGA-TCTGCTCCACT
* * * * *
6119964 TCAACTTCAAGGAGATAAGACTTGCTTTCTCTGTCTGCTCTGCTGCAACCTCAAGGAGATAAGAC
194 ACTACTTCAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCTGCTGCAACCTCAGGGAGATAAGAC
* * * * *
6120029 CTAATGCGATGTACTCTACTACAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTG
259 CTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTG
* *
6120094 CAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAATATT
324 CAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATT
** * *
6120159 TGCCATATTCGATCTACTCCACTACTGCTTCAA-GGGATAAGACTTGC
389 CACCATCTTCGATCTGCTCCACTACTGCTTCAAGGGGATAAGACTTGC
* * *
6120206 TTTCTCATTCTGCTCCGCTGTAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * * *
6120271 TTCAGAGAGATAGGGTCTATTATTTGAATCTGCTCCACTGCAACTTTAAGGAGATGTGATTACTC
66 TTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * *
6120336 GTTTTAAT-TCAGTCCACTGCAAACTCAGGTAGATAAGATTTGCCATCTTCGATCTGCTCCACTA
131 GCTTTAATCT-ACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATTTTCGATCTGCTCCACTA
* * *
6120400 CTGCTT-AGGGAGATAAGA-TCTGCTTTTTCAGTCTGCTCTGCTGTAACCTCAGGGAGATAAGAC
195 CTACTTCAGGGAGATAAGACT-TGCTTTCTCAGTCTGCTCTGCTGCAACCTCAGGGAGATAAGAC
* * * ** *
6120463 GTGATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGCTATTTGAATATGCTCCATTG
259 CTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTG
* * * *
6120528 CAACTTCAGGGAGATGGGATTACTGGCGTTAATTTACCCCACTACAAACTCAGGGAGATAAGATT
324 CAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATT
* *
6120593 CACCATCTTCGATCTACTCCACTACTGCTTCGAGGGGATAAGACTTGC
389 CACCATCTTCGATCTGCTCCACTACTGCTTCAAGGGGATAAGACTTGC
* * *
6120641 TTTC-CATTCTGCTCCGCTGTAACCTAAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * *
6120705 TTTAGAGAGATAGGATCTATTATTTGAATCTGCTCCACTGCAACTTTAGGGAGATGTGATTAC-G
66 TTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * * *
6120769 CGTTTTAATCCACTCCACTGCAACCTCAGGGAGATAATATTTGCCATCTTCGATCTGCTCCACTA
131 -GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATTTTCGATCTGCTCCACTA
* * * * * * * * *
6120834 CTCCTT-AGGGAGATAAGATTTGCTTTTTCGGTTTCCTCTGCTGTAACCTTAGGGAGATAAGACG
195 CTACTTCAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCTGCTGCAACCTCAGGGAGATAAGACC
* * * * *
6120898 TGATGTGATCTACTCTACTGCAACTTCAAAGAGATAAGATCTGTTATTTGAATCTGCTCTATTGC
260 TGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGC
* * * * * *
6120963 TACTTCAGGGAGATAGGATTACTGGATTTAATTTACCCCACTACAAACTCAGGGAGATAAGATTC
325 AACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTC
* * * * *
6121028 ACCATTTTC-AGTCTGC-CCTACT-TTAACTTCATGGGGATAAGACTTTC
390 ACCATCTTCGA-TCTGCTCC-ACTACT-GCTTCAAGGGGATAAGACTTGC
* * * *
6121075 TTTCTAAGTCTGCTCCGCTGCAACATCAGGGAGATAAGACCTGATACGATCTTCTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * *
6121140 TTTAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGCAACCTCAGGGAGATGGGATTACTC
66 TTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* ** * * * * *
6121205 GTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATATTCAATCTGCCCCATTTC
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATTTTCGATCTGCTCCACTAC
* * * * * * * * *
6121270 AACTTCAGGGGGTTAAGACTTGCTTTTTCAGTTTGCT-TCGTTGCAACCTTAGGGACATAAGACT
196 TACTTCAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCT-GCTGCAACCTCAGGGAGATAAGACC
* * * * * * ** *
6121334 TGATACGATTTACTCAACTACAACTTCAGAGAGATAAGATCTGTTACTCGAATCCGCTCCGTTAC
260 TGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGC
*
6121399 AACTTCAGGGAGATGGGATTACTGGTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTC
325 AACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTC
* ** *
6121464 ACCATCTTC-AGTCTGC-CCAACTTCAACTTCAAGGGGATAAGACTTTC
390 ACCATCTTCGA-TCTGCTCC-ACTACTGCTTCAAGGGGATAAGACTTGC
* * * * * * * * *
6121511 TTTCTAAGTCTGCTCCGCTACAACATCGGGGAGATAAGACTTAATGCGATGTACTCTACTACAGC
1 TTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
*
6121576 TTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTG
66 TTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * *
6121641 GCTTTAATCTACTCCACTGCAAACTTAGGGAGATAAGATTTGCCATATTCGATCTACTCCACTAC
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATTTTCGATCTGCTCCACTAC
* * * * * *
6121706 TGCTTCAAGGG-GATAAGACTTGCTTTCTCATTCTGCTCCGCTGTAACCTTAGGGAGATAAGATC
196 TACTTC-AGGGAGATAAGACTTGCTTTCTCAGTCTGCTCTGCTGCAACCTCAGGGAGATAAGACC
* * * * * *
6121770 TGATTCGATCCACTCTACTGCAACTTTAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGT
260 TGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGC
* * * * * * * *
6121835 AACTTTAGTGAGATGTGATTACTCGTTTTAATCCACTCCACTGCAAACTCTGGGAGATAAGATTT
325 AACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTC
* * * * *
6121900 GCCATCTTCGATCTACTCCACTACTGCTT--AGGGAGA-AAAAATCTAC
390 ACCATCTTCGATCTGCTCCACTACTGCTTCAAGGG-GATAAGACT-TGC
* * ** * * * ** *
6121946 TTTTTCGGTCTGCTCTTCTGTAACCTTAGGGAGATAAGACTTGATTTGATCTAGTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * *
6122011 TTGAGAGAGATTGGATCTTTTATTTGAA-CCTGCTCCACTGCAACTTTAGGGAGATGGGATTACT
66 TTCAGAGAGATAGGATCTATTATTTGAATCC-GCTCCACTGCAACTTCAGGGAGATGGGATTACT
* * * *
6122075 GGCTTTAATCTACTCCACTGC-AACTTAAGGTGATAAGATTTGCCTTTTTCGATCTGCTCCACTA
130 GGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATTTTCGATCTGCTCCACTA
* * * * * *
6122139 ATGCTTCATGGG-GATAAGACTTGCTTTCTCAGTCTGCTCCGCTACAACCTTAGGGTGATAAGAC
195 CTACTTCA-GGGAGATAAGACTTGCTTTCTCAGTCTGCTCTGCTGCAACCTCAGGGAGATAAGAC
* * * *
6122203 CTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTCGAATTCGTTCCACTG
259 CTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTG
* * * **
6122268 TAACTTTAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGTAAACTCAATGAGATAAGATT
324 CAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATT
** *
6122333 TGCCATCTTCGATCTGCTCCACTACCGCTT--AGGGAGATAAGA-TCTGC
389 CACCATCTTCGATCTGCTCCACTACTGCTTCAAGGG-GATAAGACT-TGC
* * *
6122380 -TTCTTCGGTCTGCTCCGCTACAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAA
1 TTTC-TCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAA
* * * * * * * *
6122444 CTTCAGGGAGATAAGATCTGTTATTTGAATCCTCTCGACTGCAACTTTAGGGAGATAGGATTATT
65 CTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACT
*** * * * * *
6122509 CATTTTAATCTACTCCATTACAAATTCAGGGAGATAAGATTTGCCATCTTCAATCTGCTCCACTA
130 GGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATTTTCGATCTGCTCCACTA
* * * *
6122574 CTGCTT-AGGGAGATAAGA-TCTGC-TTCTTCGGTCTGCTCTGCTGTAACTTCAGGGAGATAAGA
195 CTACTTCAGGGAGATAAGACT-TGCTTTC-TCAGTCTGCTCTGCTGCAACCTCAGGGAGATAAGA
* * * * * *
6122636 CGTGATGCGATCTACTCTATTGCAACTTTAGAGAGATATGATCTGTTATTTGAATCTGCTCCTCT
258 CCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACT
* * * *
6122701 ACAACTTCAGGGAGATGAGATTACTAGCTTTAATCTACTCCACTGCAAACTTAGGGAGATAAGAT
323 GCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGAT
* * * * * * ** * * * *
6122766 TCACCATATTCAATCTACCCCATTTCAACTTTAGGGGGTTAAGACTTGT
388 TCACCATCTTCGATCTGCTCCACTACTGCTTCAAGGGGATAAGACTTGC
* * * * * * * * * * *
6122815 TTTTTCAGTTTGCTTCGTTGCAACCTTAGGGACATAAGACTTGATACGATTTACTCAACTACAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * * *
6122880 TTCAGAGAGATAAGATCTGTTATTCGAATCCGCTCCATTACAGCTTCAGGGAGATGGGATTACTG
66 TTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * * ** *
6122945 GTTTTAAT-TCACTCCACTGCAAACTCAGGGATATAAGACTCACCATCTTTAG-TCTGC-CCACT
131 GCTTTAATCT-ACTCCACTGCAAACTCAGGGAGATAAGATTTGCCAT-TTTCGATCTGCTCCACT
* * * ** *
6123007 GCAACTTCAAGGG-GATAAGACTTGTTTTCTCAGTCTGCTCCACTGCAACCTCAAGGAGATAAGA
194 ACTACTTC-AGGGAGATAAGACTTGCTTTCTCAGTCTGCTCTGCTGCAACCTCAGGGAGATAAGA
* * * * * * * *
6123071 CCTGATGCGATGTACTCTACTACAACTACAGAGAGATAGGATCTATTATTTGAATCTGCTACATT
258 CCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACT
* * * *
6123136 GCAACTTCTGGGAGATGGGATTACTGGCTTTAATTTACCCCATTGCAAACTCAGGGAGATAAGAT
323 GCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGAT
* * * ** *
6123201 TCAGCATATTC-AGTCTG-TCCTACTTCAACTTCAAGGGGATAAGACTTTC
388 TCACCATCTTCGA-TCTGCTCC-ACTACTGCTTCAAGGGGATAAGACTTGC
* * * *
6123250 TTTCTCAGTCTGCTCCGCTGTAACCTTAGCGAGATAAGACCTGATGCGATCTACTTTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * * * * *
6123315 TTTAGAGAGATAGGATCTATAATTTGAATCTGCTCCACTGTAACTTTAGGGAGACGGGCTCACTG
66 TTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* *
6123380 GCTTTAATCTATTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTAC
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATTTTCGATCTGCTCCACTAC
* * * * *
6123445 TGCTT-AGGGAGATAAGA-TCTGCTTTATCAGTCTGCTCTGATGTAACCTCAGGGAGATAAGACG
196 TACTTCAGGGAGATAAGACT-TGCTTTCTCAGTCTGCTCTGCTGCAACCTCAGGGAGATAAGACC
* ** *
6123508 TGATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCTTCTCCATTGC
260 TGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGC
* * * * *
6123573 AACTTCAGGGAGATGGGATTACTGGTTTTAATTTACCCCACCGCAAACTCAGAGAGATAAGATTC
325 AACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTC
* ** *
6123638 ACCATCTTC-AGTCTGC-CCTACTTCAACTTCAAGGGGATAAGACTTTC
390 ACCATCTTCGA-TCTGCTCC-ACTACTGCTTCAAGGGGATAAGACTTGC
* * * * *
6123685 TTTCTAAGTCTACTCCGCTACAACATCGGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * * * *
6123750 TTCAGAGAGATATGATCTATTATTTGAATCTGCTTCTCTACAACTTCAGGGAGATGAGATTACTA
66 TTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* * ** * * * *
6123815 GCTTTAATCTACTCCACTACAAACTCAGGGAGATAATATTCACCATATTCAATCTGCCCCACTTC
131 GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATTTTCGATCTGCTCCACTAC
* * * * * * * * * *
6123880 AACTTCAGGGGGTTCAGACTTACTTTTTCAGTTTGCT-TCGCTGCAACCTTAGGGATATAAGACT
196 TACTTCAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCT-GCTGCAACCTCAGGGAGATAAGACC
* * * * *
6123944 TGATACGATCTACTCTACTGCAACTTCAGAGAGATAAGACCTGTTATTCGAATCCGCTCCATTAC
260 TGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGC
* * * *
6124009 AACTTCAGGGAGATGGGATTTCTGGTTTTAATCTACTCCACTACAAACTCAGGAAGATAAGATTC
325 AACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTC
* * * **
6124074 ACCATCTT-TAGTTTGC-CCACTTCAACTTCAAGGGGATAAGACTTGC
390 ACCATCTTCGA-TCTGCTCCACTACTGCTTCAAGGGGATAAGACTTGC
* * * * *
6124120 TTTCTCATTCTGCTCCGCTGTAACCTCAAGGAGATAATACCTGATGCGATCTACTCTACTGCTAC
1 TTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * *
6124185 TTCAGAGAGATTGGATCTATTATATGAATCCGCTCCACTGTAACTTAAGGGAGATGGGATTGCTG
66 TTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
* *
6124250 GCTTTAATCTACTCCACTGCAAACTTA-GGATGATAAGATTTGCCATATTCGATCTGCTCCACTA
131 GCTTTAATCTACTCCACTGCAAACTCAGGGA-GATAAGATTTGCCATTTTCGATCTGCTCCACTA
* * * * * * *
6124314 CTGCTTCAAGTG-GATAAGACTTGCTTTCTCAATCTCCTCCGCTACAACCTTAGGGAGATAAGAC
195 CTACTTC-AGGGAGATAAGACTTGCTTTCTCAGTCTGCTCTGCTGCAACCTCAGGGAGATAAGAC
* * * * * * *
6124378 CTGATGCGATATACTCTACTGCAACTTCAGAGAGATAGGATGTATTATTTGAATTCGTTCCGCTG
259 CTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTG
* * * * *
6124443 CAAATTTAGGGAGACGGGATTACTGGCCTTAATCTACTCCACTGCAAACTCAAGGAGATAAGATT
324 CAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATT
***
6124508 TGTCATCTTCGATCTGCTCCACTACTGCTT--AGGGAGATAAGA-TATGC
389 CACCATCTTCGATCTGCTCCACTACTGCTTCAAGGG-GATAAGACT-TGC
* *
6124555 -TTCTTCGGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAA
1 TTTC-TCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAA
* * *
6124619 CTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGTAACTTCAGGGAGAT
65 CTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGAT
6124675 AAGATTTCCC
Statistics
Matches: 6017, Mismatches: 964, Indels: 195
0.84 0.13 0.03
Matches are distributed among these distances:
432 3 0.00
433 290 0.05
434 1789 0.30
435 2534 0.42
436 1052 0.17
437 342 0.06
438 7 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (436 bp):
TTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
TTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGGGATTACTG
GCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATTTTCGATCTGCTCCACTAC
TACTTCAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCTGCTGCAACCTCAGGGAGATAAGACCT
GATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGCA
ACTTCAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTCA
CCATCTTCGATCTGCTCCACTACTGCTTCAAGGGGATAAGACTTGC
Found at i:6119479 original size:44 final size:44
Alignment explanation
Indices: 6117427--6137030 Score: 733
Period size: 44 Copynumber: 450.8 Consensus size: 44
6117417 ACTTGATACG
* * * * * *
6117427 ATCTACTCTACTGCAACTTCAGAGAGACAAGATCTGTTATTCGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * ** ** *
6117471 ATCTGCTCCATTACAACTTCAGGGAGATGGGAT-TACTGGTTTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
*
6117515 ATCTACTCCACTGCAAAC-TCAGGGAGATAAGAT-TCACCATCGTT-A
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCAT--TTGA
* * * * * *
6117560 GTCTGC-CCACTTCAACTTCAGGGGGATAAGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCT-CATT-TGA
* * * * * **
6117603 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGA-CT-TGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * ** * *
6117644 ATCTACTCTACTGCTACATCAGAGAGATTGGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** **
6117688 ATCCGCTCCACTGCAACTTCAGGGAGATGGGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* * * *
6117732 ATCTACTTCACTGCAAACTT-AGGGTGATAAGATTTAC-CATTTTA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCATTTGA
* * * * *
6117776 GATCTGCTCCACTACTACTTCAAGGG-GATAAGA-CT-TGCTTTCTCA
1 -ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCT-CATT-TGA
* * * * * * * **
6117821 TTCTGCTCCGCTGTAAC-CCTAGGGAGATTAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCTCATTTGA
* * * * *
6117862 ATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * ** * *
6117906 ATCCACTCCATCTGTAACTTTAGGGAGATGTGAT-TACTCGTTTTA
1 ATCTACTCCA-CTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
* * *
6117951 ATCCACTCCACCGCAAAC-TCAGGGAGATAAGAT-TTTCCATCTTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTCT-CAT-TT-GA
** * ** * *
6117996 ATCTGGTCCACTACTGCTT-AGGGAGATAAGATCTGCT-TTTTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
* * *** * *** * * *
6118039 GTCTGCTATGCTGTAACCAAAGGGAGATAAGA-C-GTGATGTG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * *
6118080 ATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * ** * *
6118124 ATCTGCTTCATTGCAACTTCAGGGAGATGGGGT-TCCTGGATTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT-CATTTGA
* * * * *
6118168 ATGTACCCCACTGCAAAC-TCAGGGAGATAAAAT-TCACCATATTTA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * * *
6118213 GTCTGC-CTACTTCAACTTCAGGGAGATAAGACTTACTTTC-TCTG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGA--T-CTCTCATTTGA
* ** * * * **
6118257 -TCTGCTCTGCTGCAACCTCAAGGAGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * ** * * * *
6118297 ATGTACTCTACAACAACTTCAGAGAGATAGGATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
**
6118341 ATCCGCTCCACTGCAACTTCAGGGAGATAAGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
*
6118385 ATCTACTCCACTGCAAAC-TCAGGGAGATAAGATTTGC-CATATTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* ** * *
6118430 ATCTACTCCACTACTGCTTCAAGGG-GATAAGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCT-CATT-TGA
* * * * * *
6118474 TTCTGCTCCGCTGTAACCTT-AGGGAGATAAGA--TCTGATTCG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * * *
6118515 ATCCACTCTACTGCAACTTTAGAGAGATAGGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * * * ** * *
6118559 ATCCGCTCCACTGTAACTTTAGTGAGATGTGAT-TACTCGTTTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
* * *
6118603 ATCCACTCCACTGCAAAC-TCTGGGAGATAAGATTTGC-CATCTTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* ** * * *
6118648 ATCTACTCCACTACTGCTT-AGGGAGAAAAAATCTACT-TTTTCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTT-GA
* * ** * *
6118691 GTCTGCTCTTCTGTAACCTT-AGGGAGATAAGA-CT-TGATTTG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * * ** * *
6118732 ATCTAGTCTACTGCAACTTGAGAGAGATTGGATCTTTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * **
6118776 ACCTGCTCCACTGCAACTTTAGGGAGATGGGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* * * *
6118820 ATCTACTCCACTGCAAACTT-AAGGTGATAAGATTTGC-CTTTTTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTC-ATTT-GA
* * *
6118865 ATCTGCTCCACT--AATGCTTCATGGG-GATAAGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAA--CTTCA-GGGAGATAAGATCTCT-CATT-TGA
* * * * * * **
6118909 GTCTGCTCCGCTACAACCTT-AGGGTGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * * *
6118950 ATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTCGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * **
6118994 AT-T-CGTTCCACTGTAACTTTAGGGAGATGGGAT-TACTGGC-TTT-A
1 ATCTAC--TCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* ** *
6119038 ATCTACTCCACTGTAAAC-TCAATGAGATAAGATTTGC-CATCTTCG-
1 ATCTACTCCACTG-CAACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* * ** *
6119083 ATCTGCTCCACTACCGCTT-AGGGAGATAAGATCTGCTTC-TTCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-C-TCATTTGA
* * * * * * * **
6119126 GTCTGCTCCGCTACAACCTCAGGGAGATAAGA-C-GTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * *
6119167 ATCTACTCTACTGCAACTTCAGGGAGAT-AGATCTATTATTCGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * ***
6119210 AT-T-CGTTCCATTGTAACTTCAGGGAGACGGGAT-TACTGGC-TTT-A
1 ATCTAC--TCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* * *
6119254 ATCTACTCCTCTGCAAAC-TCAAGGAGATAAGAT-TTTCCATTTTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTCT-CA-TTT-GA
* * ** * * *
6119299 ATCTGCTCCACTACCGCTT-AAGGAGATAAGACCTGCTTC-TTCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-C-TCATTTGA
* * * * * * **
6119342 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGA-C-GTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * *
6119383 ATCTACTCTACTGCAACTTCAGGGAGATAAGATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* ** *
6119427 ATCCACTCCACTGCAACTTCAGGGAGATGGGAT-TACTCATTTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
* * *
6119471 ATCTACTCCATTACAAAC-TCAGGGAGATAAGATTTGC-CATCTTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* * * ** * *
6119516 ATCTGCTCCTCTACTGCTT-AGGGAGATAAGAACTGCTTC-TTCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-C-TCATTTGA
* * * * * * * * **
6119559 GTCTGCTCCGCTGTAACCTCAGGGGGATAAGA-C-ATGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * *
6119600 ATCTACTCTACTGCAACTTCAGAGAGATATGATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * *
6119644 ATCTGCTCCTCTACAACTTCAGGGAGATGAGAT-TACT-AGCTTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCA--TTTGA
* *
6119688 ATCTACTCCACTGCAAAC-TCAGGGGAGATAAGAT-TCACCATATTCA
1 ATCTACTCCACTGC-AACTTCA-GGGAGATAAGATCTC-TCAT-TTGA
* * * * * * *
6119734 ATCTGCCCCCATTTCAACTTCAGGGGGATAAGA-CATACT-TTTTCA
1 ATCT-ACTCCACTGCAACTTCAGGGAGATAAGATC-T-CTCATTTGA
* * * * * * * **
6119779 GTTTGCTTCGCTGCAACCTT-AGGGATATAAGA-CT-TGATACG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * *
6119820 ATCTACTCTACTACAACTTCAGAGAGATAAGATCTGTTATTCGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * * ** ** *
6119864 ATCCGCTCCATTACAACTTCAGGGAGATGGGAT-TACTGGTTTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
* * * *
6119908 ATCTACTCCACTGAAAAC-CCAGGGAGATAAGAT-TCACCATCTTTA
1 ATCTACTCCACTG-CAACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * * * * *
6119953 TTCTGC-CTATTTCAACTTCAAGGAGATAAGACTTGCTTTC-TCTG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGA--T-CTCTCATTTGA
* ** * * * **
6119997 -TCTGCTCTGCTGCAACCTCAAGGAGATAAGA-C-CTAATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * * *
6120037 ATGTACTCTACTACAACTTCAGAGAGATAGGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** *
6120081 ATCCGCTCCACTGCAACTTCAGGGAGATGAGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* *
6120125 ATCTACTCCACTGCAAAC-TCAGGGAGATAATATTTGC-CATATTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* ** * * *
6120170 ATCTACTCCACTACTGCTTCAAGG-GATAAGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCT-CATT-TGA
* * * * * **
6120213 TTCTGCTCCGCTGTAACCTT-AGGGAGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * *
6120254 ATCTACTCTACTGCAACTTCAGAGAGATAGGGTCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * ** * *
6120298 ATCTGCTCCACTGCAACTTTAAGGAGATGTGAT-TACTCGTTTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
* * *
6120342 AT-TCAGTCCACTGCAAAC-TCAGGTAGATAAGATTTGC-CATCTTCG-
1 ATCT-ACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* * ** * *
6120387 ATCTGCTCCACTACTGCTT-AGGGAGATAAGATCTGCT-TTTTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
* * ** * * * * *
6120430 GTCTGCTCTGCTGTAACCTCAGGGAGATAAGA-C-GTGATGTG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* *
6120471 ATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGCT-ATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
* * * ** *
6120515 ATATGCTCCATTGCAACTTCAGGGAGATGGGAT-TACTGGC-GTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* * * *
6120559 ATTTACCCCACTACAAAC-TCAGGGAGATAAGAT-TCACCATCTTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCAT-TT-GA
* ** *
6120604 ATCTACTCCACTACTGCTTCGAGGG-GATAAGA-CT-TGC-TTTCCA
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCT-CATTT-GA
* * * * * * * **
6120647 TTCTGCTCCGCTGTAACCTAAGGGAGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * *
6120688 ATCTACTCTACTGCAACTTTAGAGAGATAGGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * ** * * *
6120732 ATCTGCTCCACTGCAACTTTAGGGAGATGTGAT-TACGCGTTTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
* * * *
6120776 ATCCACTCCACTGCAACCTCAGGGAGATAATATTTGC-CATCTTCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* * ** * *
6120821 ATCTGCTCCACTACTCCTT-AGGGAGATAAGATTTGCT-TTTTCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTT-GA
* * * ** * * * *
6120864 GTTTCCTCTGCTGTAACCTT-AGGGAGATAAGA-C-GTGATGTG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* ** * *
6120905 ATCTACTCTACTGCAACTTCAAAGAGATAAGATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * *
6120949 ATCTGCTCTATTGCTACTTCAGGGAGATAGGAT-TACTGGATTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT-CATTTGA
* * * * *
6120993 ATTTACCCCACTACAAAC-TCAGGGAGATAAGAT-TCACCATTTTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCA-TTTGA
* * ** * *
6121038 GTCTGC-CCTACTTTAACTTCATGGG-GATAAGA-CTTTC-TTTCTA
1 ATCTACTCC-ACTGCAACTTCA-GGGAGATAAGATCTCTCATTT-GA
* * * * **
6121081 AGTCTGCTCCGCTGCAACATCAGGGAGATAAGA-C-CTGATACG-
1 A-TCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * *
6121123 ATCTTCTCTACTGCAACTTTAGAGAGATAAGATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * ** * *
6121167 ATCCGCTCCACTGCAACCTCAGGGAGATGGGAT-TACTCGTTTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
* *
6121211 ATCTACTCCACTGCAAAC-TCAGGGAGATAAGAT-TCACCATATTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * * * * *
6121256 ATCTGCCCCATTTCAACTTCAGGGGGTTAAGA-CT-TGCTTTTTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCT-C-ATTTGA
* * * * ** * * **
6121300 GTTTGCTTCGTTGCAACCTT-AGGGACATAAGA-CT-TGATACG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * * * *
6121341 ATTTACTCAACTACAACTTCAGAGAGATAAGATCTGTTACTCGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** ** * ** ** *
6121385 ATCCGCTCCGTTACAACTTCAGGGAGATGGGAT-TACTGGTTTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
* *
6121429 ATCTACTCCACTGCAAAC-TCAGGGAGATAAGAT-TCACCATCTTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * *
6121474 GTCTGC-CCAACTTCAACTTCAAGGG-GATAAGA-CTTTC-TTTCTA
1 ATCTACTCC-ACTGCAACTTC-AGGGAGATAAGATCTCTCATTT-GA
* * * * * * **
6121517 AGTCTGCTCCGCTACAACATCGGGGAGATAAGA-CT-TAATGCG-
1 A-TCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * * * *
6121559 ATGTACTCTACTACAGCTTCAGAGAGATAGGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** *
6121603 ATCCGCTCCACTGCAACTTCAGGGAGATGAGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
*
6121647 ATCTACTCCACTGCAAACTT-AGGGAGATAAGATTTGC-CATATTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* ** * *
6121692 ATCTACTCCACTACTGCTTCAAGGG-GATAAGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCT-CATT-TGA
* * * * * *
6121736 TTCTGCTCCGCTGTAACCTT-AGGGAGATAAGA--TCTGATTCG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * * *
6121777 ATCCACTCTACTGCAACTTTAGAGAGATAGGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * * * ** * *
6121821 ATCCGCTCCACTGTAACTTTAGTGAGATGTGAT-TACTCGTTTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
* * *
6121865 ATCCACTCCACTGCAAAC-TCTGGGAGATAAGATTTGC-CATCTTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* ** * * *
6121910 ATCTACTCCACTACTGCTT-AGGGAGAAAAAATCTACT-TTTTCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTT-GA
* * ** * *
6121953 GTCTGCTCTTCTGTAACCTT-AGGGAGATAAGA-CT-TGATTTG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * * ** * *
6121994 ATCTAGTCTACTGCAACTTGAGAGAGATTGGATCTTTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * **
6122038 ACCTGCTCCACTGCAACTTTAGGGAGATGGGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* * * *
6122082 ATCTACTCCACTGCAACTT-AAGGTGATAAGATTTGC-CTTTTTCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTC-ATTT-GA
* * *
6122126 ATCTGCTCCACT--AATGCTTCATGGG-GATAAGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAA--CTTCA-GGGAGATAAGATCTCT-CATT-TGA
* * * * * * **
6122170 GTCTGCTCCGCTACAACCTT-AGGGTGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * * *
6122211 ATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTCGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * **
6122255 AT-T-CGTTCCACTGTAACTTTAGGGAGATGGGAT-TACTGGC-TTT-A
1 ATCTAC--TCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* ** *
6122299 ATCTACTCCACTGTAAAC-TCAATGAGATAAGATTTGC-CATCTTCG-
1 ATCTACTCCACTG-CAACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* * ** *
6122344 ATCTGCTCCACTACCGCTT-AGGGAGATAAGATCTGCTTC-TTCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-C-TCATTTGA
* * * * * * * **
6122387 GTCTGCTCCGCTACAACCTCAGGGAGATAAGA-C-GTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * *
6122428 ATCTACTCTACTGCAACTTCAGGGAGATAAGATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * *
6122472 ATCCT-CTCGACTGCAACTTTAGGGAGATAGGAT-TATTCATTTTA
1 AT-CTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
* * * * *
6122516 ATCTACTCCATTACAAATTCAGGGAGATAAGATTTGC-CATCTTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCAT-TTGA
* * ** *
6122561 ATCTGCTCCACTACTGCTT-AGGGAGATAAGATCTGCTTC-TTCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-C-TCATTTGA
* * ** * * * **
6122604 GTCTGCTCTGCTGTAACTTCAGGGAGATAAGA-C-GTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * * *
6122645 ATCTACTCTATTGCAACTTTAGAGAGATATGATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * *
6122689 ATCTGCTCCTCTACAACTTCAGGGAGATGAGAT-TACT-AGCTTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCA--TTTGA
* *
6122733 ATCTACTCCACTGCAAACTT-AGGGAGATAAGAT-TCACCATATTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * * * * ** *
6122778 ATCTACCCCATTTCAACTTTAGGGGGTTAAGA-CTTGTTTTTTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATC-TCTCATTTGA
* * * * ** * * **
6122822 GTTTGCTTCGTTGCAACCTT-AGGGACATAAGA-CT-TGATACG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * * *
6122863 ATTTACTCAACTACAACTTCAGAGAGATAAGATCTGTTATTCGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * * * ** ** *
6122907 ATCCGCTCCATTACAGCTTCAGGGAGATGGGAT-TACTGGTTTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
* * *
6122951 AT-TCACTCCACTGCAAAC-TCAGGGATATAAGA-CTCACCATCTTTA
1 ATCT-ACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * ** *
6122996 GTCTGC-CCACTGCAACTTCAAGGG-GATAAGA-CT-TGTTTTCTCA
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCT-CATT-TGA
* * * * * **
6123039 GTCTGCTCCACTGCAACCTCAAGGAGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * * * *
6123080 ATGTACTCTACTACAACTACAGAGAGATAGGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * **
6123124 ATCTGCTACATTGCAACTTCTGGGAGATGGGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* * * * *
6123168 ATTTACCCCATTGCAAAC-TCAGGGAGATAAGAT-TCAGCATATTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * * *
6123213 GTCT-GTCCTACTTCAACTTCAAGGG-GATAAGA-CTTTCTTTCTCA
1 ATCTACTCC-ACTGCAACTTC-AGGGAGATAAGATCTCTCATT-TGA
* * * * * * **
6123257 GTCTGCTCCGCTGTAACCTT-AGCGAGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
** * * * * *
6123298 ATCTACTTTACTGCAACTTTAGAGAGATAGGATCTATAATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * *** * *
6123342 ATCTGCTCCACTGTAACTTTAGGGAGACGGGCTCACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCT--CATTTGA
* *
6123386 ATCTATTCCACTGCAAAC-TCAGGGAGATAAGATTTGC-CATCTTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* * ** *
6123431 ATCTGCTCCACTACTGCTT-AGGGAGATAAGATCTGCT--TTATCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATT-TGA
* * * * * * * *
6123474 GTCTGCTCTGA-TGTAACCTCAGGGAGATAAGA-C-GTGATGTG-
1 ATCTACTC-CACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * *
6123515 ATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * ** ** *
6123559 ATCTTCTCCATTGCAACTTCAGGGAGATGGGAT-TACTGGTTTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
* * * * * *
6123603 ATTTACCCCACCGCAAAC-TCAGAGAGATAAGAT-TCACCATCTTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * *
6123648 GTCTGC-CCTACTTCAACTTCAAGGG-GATAAGA-CTTTC-TTTCTA
1 ATCTACTCC-ACTGCAACTTC-AGGGAGATAAGATCTCTCATTT-GA
* * * * * **
6123691 AGTCTACTCCGCTACAACATCGGGGAGATAAGA-C-CTGATGCG-
1 A-TCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * *
6123733 ATCTACTCTACTGCAACTTCAGAGAGATATGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * *
6123777 ATCTGCTTCTCTACAACTTCAGGGAGATGAGAT-TACT-AGCTTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCA--TTTGA
* * * *
6123821 ATCTACTCCACTACAAAC-TCAGGGAGATAATAT-TCACCATATTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * * * * *
6123866 ATCTGCCCCACTTCAACTTCAGGGGGTTCAGA-CT-TACTTTTTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCT-C-ATTTGA
* * * * * * * **
6123910 GTTTGCTTCGCTGCAACCTT-AGGGATATAAGA-CT-TGATACG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * *
6123951 ATCTACTCTACTGCAACTTCAGAGAGATAAGACCTGTTATTCGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * * ** * ** *
6123995 ATCCGCTCCATTACAACTTCAGGGAGATGGGATTTCTGGTTTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * *
6124039 ATCTACTCCACTACAAAC-TCAGGAAGATAAGAT-TCACCATCTTTA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * * *
6124084 GTTTGC-CCACTTCAACTTCAAGGG-GATAAGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCT-CATT-TGA
* * * * * * * * **
6124127 TTCTGCTCCGCTGTAACCTCAAGGAGATAATA-C-CTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * ** * * *
6124168 ATCTACTCTACTGCTACTTCAGAGAGATTGGATCTATTATATGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * * **
6124212 ATCCGCTCCACTGTAACTTAAGGGAGATGGGAT-TGCTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
*
6124256 ATCTACTCCACTGCAAACTT-A-GGATGATAAGATTTGC-CATATTCG-
1 ATCTACTCCACTGC-AACTTCAGGGA-GATAAGATCT-CTCAT-TT-GA
* * ** * * *
6124301 ATCTGCTCCACTACTGCTTCAAGTG-GATAAGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCT-CATT-TGA
* * * * **
6124345 ATCTCCTCCGCTACAACCTT-AGGGAGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * * *
6124386 ATATACTCTACTGCAACTTCAGAGAGATAGGATGTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * *** *
6124430 AT-T-CGTTCCGCTGCAAATTTAGGGAGACGGGAT-TACTGGC-CTT-A
1 ATCTAC--TCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* * *
6124474 ATCTACTCCACTGCAAAC-TCAAGGAGATAAGATTTGTCATCTTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTCTCAT-TT-GA
* * ** * *
6124519 ATCTGCTCCACTACTGCTT-AGGGAGATAAGATATGCTTC-TTCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-C-TCATTTGA
* * * * * * **
6124562 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGA-C-GTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * *
6124603 ATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * * *
6124647 ATCCGCTCCACTGTAACTTCAGGGAGATAAGATTTCCCATCTTCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCAT-TT-GA
* * ** *
6124692 ATCTGCTCCACTACTGCTT-AGGGAGATAATATCTGCT--TTTCCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTT--GA
* * ** * * * * * * *
6124735 GTCTGCTCTGCTGTAACCTGAGAGAGATAAGA-C-GTGATGTG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * *
6124776 ATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * ** *
6124820 ATCTGCTCCATTGCAACTTCTGGGAGATGGGAT-TACTGACTTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCA-TTTGA
* * * * *
6124864 ATTTACCCCACTACAAAC-TCAGGGAGATAAGAT-TCAGCATATTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * * * *
6124909 GTCTGC-CCTAATTCAACTTCAAGGG-GATAAGA-CTTTCTTTCTCA
1 ATCTACTCC-ACTGCAACTTC-AGGGAGATAAGATCTCTCATT-TGA
* * ** * * * * *
6124953 GTCTGCTCTGCTGTAACATCAGAGAGATAAGA-C-CTGATGTG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * * *
6124994 ATCTACTCTACTGCAACTTTAGAGACATAGGATCTATAATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * ** *
6125038 ATTTGCTCCACTGTAACTTTAGGGAGA-CGGACTCACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGA-TCTCT--CATTTGA
*
6125082 ATCTACTCCACTGCAAAC-TCAGGGAGATAAGATTTGC-CATCTTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* * ** *
6125127 ATCTGCTCCACTACTGCTT-AGGGAGATAAGATCTGCTTC-TTCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-C-TCATTTGA
* * * * * * * **
6125170 GTCTGCTCCGCTGCAACCTCAGGGAGATAGGA-C-GTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * *
6125211 ATCTACTCCACTACAAAC-TCAGGGAGATAAGAT-TCACCATCTTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * * * *
6125256 GTCTGCCCCACTTCAACTTCAGGGGGATAAGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCT-CATT-TGA
* * * * * * **
6125300 GTCTGCTCCGCAGCAACGTCAGGGAGATAAGA-C-CTGATACG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * *
6125341 ATCTACTCTACTGCTACTTCAGAGAGAT-TGAATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAG-ATCTCTCATTTGA
** * * **
6125385 ATCCGCTCCACTGAAACTTTAGGGAGATGGGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* * * *
6125429 ATCTGCTCCACTGCAAAC-TCAAGTAGATAAGAT-TTTCCATTTTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTCT-CA-TTT-GA
* * ** * *
6125474 ATCTGCTCCACTACTGCTTCAAGGG-GATAAGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCT-CATT-TGA
* * * * * **
6125518 GTCTGCTCCGCTACAACCTT-AGGGAGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * *
6125559 ATCTACTCTACTGAAACTTCAGAGAGATAGGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * *
6125603 AT-TCATTCCACTGTAACTTCAGGAAGACAGGAT-TACTGGC-TTT-A
1 ATCT-ACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* * * * *
6125647 ATCTACTCCACTGCAAAC-TCAAGGAGATAACATTTGTCGTCTTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTCTCAT-TT-GA
* * ** *
6125692 ATCTGCTCCACTACTGCTT-AGGGAGATAAGATCTGCTTC-TTCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-C-TCATTTGA
* * ** * * **
6125735 GTCTGCTCCGTTGTAACCTCAGGGAGATAAGA-CGT-T-ATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATC-TCTCATTTGA
* * * *
6125776 ATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * * * *
6125820 ATCCGCTCCACTGCAACTTTAGGGAGATGAGAT-TACTCGTTTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
*
6125864 ATCTACTCCACTGCAAAC-TCAGGGAGATAAGATTTGC-CATCTTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* ** ** * *
6125909 ATCTGCTCCACCACTGCTT-AGGGAGATAAGATCTGCTTC-TTCGG
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-C-TCATTTGA
* * * * * * * * **
6125953 CT-TGCTCCGCTGTAACCTCAGAGAGATAAGA-C-GTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * *
6125993 ATCTACTCTACTGCAACTTC-GGAGAGATAAGATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGG-GAGATAAGATCTCTCATTTGA
* * ** *
6126037 ATCTGCTCCATTGCAACTTCAGGGAGATGGGAT-TACTGC-TTTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT-CATTTGA
* * * * * * *
6126081 ATTTACCCCATTGTAAAC-TCAGGGAGATAATAT-TCACCATCTTCA
1 ATCTACTCCACTG-CAACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * * *
6126126 GTCTGC-CCTACTTCAACTTCAAGGG-GATAAGA-CTTTCTTTCTCA
1 ATCTACTCC-ACTGCAACTTC-AGGGAGATAAGATCTCTCATT-TGA
* * * * **
6126170 GTCTACTCCGCTGCAACATCAGGGAGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * ** *
6126211 ATCTACTCTACTGCAACTTCAGAGAGATAAGATCGGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * **
6126255 ATC-GCTCCATTGCAACTTCAGGGAGATGGGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* * * * **
6126298 ATCTACACCACTACAAAC-TCGGGGAGATAAGATTTAGCATCTTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTCTCAT-TT-GA
** * ** * * *
6126343 ATCTGTTCCACTACTGCTTCAAAGG-GATAAGA-CT-TGCTTTTCCA
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCT-CATTT-GA
* * * * * **
6126387 ATCTGCTCCGCAGTAACCTT-AGGGAGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * * *
6126428 ATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATAATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * *** * * *
6126472 ATTTGCTCCACTGCAACTTCAGAGAGACGGGCTCACGGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTC--TCATTTGA
* *
6126516 ATCTACTCCATTGCAAAC-TCAGGGAGATAAGATTTGC-CATCTTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* * ** * * *
6126561 ATCTGCTCCACTACTGCTT-AAGGATATAAGATCTGCT--TCTTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCAT-TTGA
* * * * * * *
6126604 GTCTGCTCCGCTGTAAACTT-AGAGAGATAAGAT-TCACCATCTTCA
1 ATCTACTCCACTG-CAACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * * * *
6126649 GTCTGCCCCACTTCAACTTCAGGGGGATAAGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCT-CATT-TGA
* * * * * **
6126693 GTCTCCTCCGCTGCAACCTCAGGGAGATAAGA-CT-TGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * *
6126734 ATCTACTCTACTGCTACTTCAGAGAGAT-TGAATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAG-ATCTCTCATTTGA
** * * **
6126778 ATCCGCTCCACTGTAACTTTAGGGAGATGGGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* * *
6126822 GTCTACTCCACTGCAAAC-TCAAGGAGATAAGATTTGC-CATTTTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCA-TTT-GA
* ** * * *
6126867 ATCTACTCCACTACTGCTTCTACGG-GATAAGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCT-CATT-TGA
* * * * * * **
6126911 GTCTGCTCCGCTGCAGCCTCAGGGAGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * *
6126952 ATCTACTCTACTGCTACTTCAGAGAGAT-TGAATCTTTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAG-ATCTCTCATTTGA
** * * **
6126996 ATCCGCTCTACTGCAACTTTAGGGAGATGGGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* * * *
6127040 ATCTACTCCACTGCAAATTTAGGGTGATAAGATTTGC-CATTTTCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCA-TTT-GA
* **** * *
6127085 ATCTGCTCCACTATTGCTTCAAGGG-GATAAG-TCT-TGCTTTCTCA
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCT-CATT-TGA
* * * * * * * **
6127129 GTTTGCTCCGCTACAACCTT-AGGGAGATAA-AAC-CTGATGCG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * * *
6127170 ATCTACTCTACTGTAACTTTAGTGAGATATGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* **
6127214 AT-T-CGTTCCACTGTAACTTCTA-GGAGACGAGAT-TACTGGC-TTT-A
1 ATCTAC--TCCACTGCAACTTC-AGGGAGATAAGATCT-CT--CATTTGA
* *
6127258 ATCTACTCCACTGCAAAC-TCAAGGAGATAAGATTTGC-CATCTTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* * ** *
6127303 ATCTGCTCCACTACTGCTT-AGGGAGATAAGATCTGCTTC-TTCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-C-TCATTTGA
* * * * * * * **
6127346 GTCTGCTTCGCTGCAACCTCAGGGAGATAAGA-C-GTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** ** * * *
6127387 ATCTACTTTACTATAACTTCAGAGAGATAAGATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * * * * * *
6127431 ATCCGCTCCTCTACAACTTCAGAGAGATGAGAT-TACTCTTTTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
* *
6127475 AACTACTCCACTGCAAAC-TCAGGGAGATAAGATTTGC-CATATTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* * ** * *
6127520 ATCTGCTCCACTACTGCTT-AGGGAGATAAGATATGCTTC-TTCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-C-TCATTTGA
* * * * * * **
6127563 GTCTGCTTCGCTGCAACCTCAGGGAGATAAG--C-CGTGATACG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTC-TCATTTGA
* * * * * *
6127604 ATCTACTCTATTACAACTTCAGAGAGATAAGATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * * * * * ** ** *
6127648 ATCCGCTCTATTACAACTTTAGGAAGATGGGAT-TACTGGTTTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
*
6127692 ATCTACTCCACTGCAAACTT-AGGGAGATAAGAT-TCATCATATTTA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* ** * * * * *
6127737 GTCGGC-CCACTTCAACTTCAAGGAGATGAGGCATGCTTTC-TCTG-
1 ATCTACTCCACTGCAACTTCAGGGAGAT-AAG-AT-CTCTCATTTGA
* * * * ***
6127781 -TCTGCTCCGCTGCAACCTCAGGGAGATAAGA-C-CTGAAGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * * *
6127821 ATGTACTCTACTACAACTTCAGAGAGATAGGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* *
6127865 ATCCACTCCACTGCAACTTCAGGGAGATGAGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* *
6127909 ATCTACTCCACTGCAAAC-TCAGGGAGATAAGATTTGC-CATATCCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCAT-T-TGA
* * * ** * * *
6127954 ATTTGCTCCACTACTGCTTCAAGGG-GTTAAGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCT-CATT-TGA
* * * * * **
6127998 TTCTGCTCCGCTGTAACCTT-AGGGAGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * * *
6128039 ATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** ** * *
6128083 ATCCGCTCCACTGCAACTTCAGGGAGATGTGAT-TACTCGTTTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
* * *
6128127 ATCCACTCTACTGCAAAC-TCAGGGAGATAAGATTTGC-CATCTTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* * * ** * * * *
6128172 ATCTGCTCTACTAC-TGTTTAGGGAGATAACATCTGCT-TTTTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
* * ** * * * * *
6128215 GTCTGCTCTGCTGTAACCTCAGGGAGATAAGA-C-GTGATGTG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * *
6128256 ATCTACTCTACTGCAACTTCAGAGAGATAAAATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * *
6128300 ATCTTCTCCATTGCAACTTTAGAGAGATAGGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* * * *
6128344 ATTTACCCCACTGCAAACTT-AGAGAGATAAGATCTGCTTC-TTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-C-TCATTTGA
* * * * * * * * **
6128388 GTCTGCTCCGCTGTAACCTCAGAGAGATAAGA-C-GTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * *
6128429 ATCTACTCTACTGCAACTTCAGAGAGATATGATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * *
6128473 ATCTGCTCCTCTACAACTTCAGGGAGATGAGAT-TACT-AGCTTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCA--TTTGA
* * *
6128517 ATCTACTCCATTGCAAACTT-AGGGAGATAAGAT-TCACCATATTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * * * * *
6128562 ATCTGCCCCATTTCAACTTCAGGGGGTTAAGA-CT-TGCTTTTTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCT-C-ATTTGA
* * * * * * * **
6128606 GTTTGCTTCGCTGCAACCTT-AGGGATATAAGA-CT-TGATACG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
** * * * *
6128647 ATCTACTCCACCACAACTTCAGAGAGATAAGATCTGTTATTCGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * * ** ** *
6128691 ATCCGCTCCATTACAACTTCAGGGAGATGGGAT-TACTGGTTTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
* * *
6128735 ATCTACTCCACTGAAAAC-TCAGGGAGATAAGAT-TCACCATCTTTA
1 ATCTACTCCACTG-CAACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * *
6128780 GTCTGC-CCACTTCAACTTCAGGGAGATAAGACTTGCTTTC-TCTG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGA--T-CTCTCATTTGA
* ** * * * **
6128824 -TCTGCTCTGCTGTAACCTCAGGGAGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * * * *
6128864 ATGTAGTCTACTACAACTTCAGAGAGATAGGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * *
6128908 ATCCGCTCCACTGCAACTTTAGGGAGATGAGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* * **
6128952 ATGTACTCCACTGCAAAC-TCAGGGAGATAAGATTTGGCATATTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTCTCAT-TT-GA
* * ** *
6128997 ATCTGCTCCACTACTGCTT-AGGGAGATAAGATCTACTTC-TTCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-C-TCATTTGA
** * * * * * **
6129040 GCCTGCTCCGCTGCAACCTCAGGGAGATAAGA-C-GTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * * * *
6129081 ATCTACTGTACTGCAACTTCAGAGAGATAAGATATGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * * *
6129125 ATCCGCTCCAGTACAACTTCAGGGAGATTA-AT-TACT-AGCTTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCA--TTTGA
* *
6129168 ATCTACTCCACTGCAAAC-TCAGGGAGATAAGAT-TCACAATCTTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTCTC-AT-TTGA
* * * * *
6129213 GTCTACCCCACTTCAACTTCAGTGG-GATAAGA-CT-TGCTTTCTTA
1 ATCTACTCCACTGCAACTTCAG-GGAGATAAGATCTCT-CATT-TGA
* * ** * * **
6129257 GTCTTCTCTGCTGCAACCTT-AGGGATATAAGA-CT-TGATGCG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * *
6129298 ATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * **
6129342 ATCCGCTCCATTGCAACTTCAGGGAGATGGGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* * *
6129386 ATCTACTCCACTACCAAC-TCAGGGAGATAAGAT-TCACCATCTTCA
1 ATCTACTCCACT-GCAACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * * *
6129431 GTCTGCCCCACTTCAACTTCAAGGG-GATAAGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCT-CATT-TGA
* * ** * * * **
6129475 GTCTGCTCTGCTGCAACCTCAGGGAGATAAG-GCT-TGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * ** ** * *
6129516 ATCTACTCTACTGCTACTTCATAGAGATTGGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * * *
6129560 ATCCGCTCCACTACAACTTAAGGGAGATGAGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* * *
6129604 ATCTACTCCACTGTAAACTT-AGGGTGATAAGATTTGC-CATTTTCG-
1 ATCTACTCCACTG-CAACTTCAGGGAGATAAGATCT-CTCA-TTT-GA
* * ** * *
6129649 ATCTGCTCCACTACTGCTTCAAGGG-GATAAGA-CT-TGCTTTCTTA
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCT-CATT-TGA
* * * * * **
6129693 GTCTGCTCCGCTACAACCTT-AGGGAGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * *
6129734 ATCTACTCTACTGCAACTTCAGCGAGATAGGATTTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* ** * *** *
6129778 ATTTGTTCCACTGTAACTTCAGGGAGACGGGAT-TACTCGCTTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTC-ATTTGA
* *
6129822 ATCTACTCCACTGCAAAC-TCAAGGAGATAAGATTTGC-CATCTTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* * ** * *
6129867 ATCTGCTCCACTACTGCTT-AGGGGGATAAGATCTGCTTC-TTCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-C-TCATTTGA
* * * * * * * **
6129910 GTCTGCTCCGCTGCAACCTCAGGGAAATAAGA-C-GTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * *
6129951 ATCCACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * * *
6129995 ATCCGCTCCACTGCAACTTCAGGGAGAT-GGAAT-TACTCGTTTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAG-ATCT-CTCATTTGA
* * * *
6130039 AACTACTCCACTGCAAAC-TCAGGAAGATAAGTTTTGC-CATCTTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* * ** * *
6130084 ATCTGCTCCACTACTGCTT-AGGTAGATAAGATCTGCTTC-TTCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-C-TCATTTGA
* * * * * * **
6130127 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGA-C-GTGATACG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * *
6130168 ATCTACTCTACTGGCAACTTCAGAGAGATAAGATCTGTTATTTGA
1 ATCTACTCCACT-GCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * *
6130213 ATCTGCTCCTCTACAACTTCAGGGAGATGAGAT-TACT-AGCTTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCA--TTTGA
* * *
6130257 ATCTACTCCATTGCAAACTT-AGGGAGATAAGAT-TCACCATATTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * * * * *
6130302 ATCTGCCCCATTTCAACTTCAGGGGGTTAAGA-CT-TGCTTTTTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCT-C-ATTTGA
* * * * * * * **
6130346 GTTTGCTTCGCTGCAACCTT-AGGGATATAAGA-CT-TGATACG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * * *
6130387 ATCTACTCCACCGCAACTTCAGAGAGATAAGATCTGTTATTCGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * * ** ** *
6130431 ATCCGCTCCATTACAACTTCAGGGAGATGGGAT-TACTGGTTTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
* * *
6130475 ATCTACTCCACTGAAAAC-TCAGGGAGATAAGAT-TCACCATCTTTA
1 ATCTACTCCACTG-CAACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * *
6130520 GTCTGCCCCACTTCAACTTCAGGGGAGATAAGA-CT-TGCTTTTTCG-
1 ATCTACTCCACTGCAACTTCA-GGGAGATAAGATCTCT-C-ATTT-GA
* * * * * * **
6130565 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGA-C-GTGATACG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * *
6130606 ATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * *
6130650 ATCTGCTCCTCTACAACTTCAGGGAGATGAGAT-TACT-AGCTTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCA--TTTGA
* *
6130694 ATCTACTCCACTGCAAAC-TCAGGGAGATAAGAT-TCATCTAATTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TC-ATTTGA
** * * * * * * *
6130739 GCCTGCCCCATTTCAACTTCAGGGGGATAAGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCT-CATT-TGA
* * * * ** * **
6130783 GTCTGCTCCGCTACAACCACAGGGAGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * * * *
6130824 ATGTACTCTACTGTAACTTCAGAGAGATATGATATATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * * * *
6130868 ATCCGCTCCACTACAACTTCAGTGAGATGATAT-TACTTGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-C-T-CATTTGA
*
6130912 ATCTACTCCACTGCAAAC-TCAGGGAGATAAGATTTGC-CATATTTG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTC--ATTTGA
* * * ** * *
6130957 ATTTGCTCCACTACTGCTTCAAGGG-GATAAGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCT-CATT-TGA
* ** * * * **
6131001 TTCTGTTCCGCTGTAACCTT-AGGGAGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * * *
6131042 ATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** **
6131086 ATCCGCTCCACTGCAACTTCAGGGAGATGTGAT-TACTCA-TT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
* * *
6131128 ATCTACTCCACTACAAAC-TCAGGGAGATAAGAT-TCACCATTTTTA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCA-TTTGA
* * * * ** *
6131173 GTCTGC-CCACTTCAACTTCAGGGGGATAAGA-CT-TGTTTTCTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCT-CATT-TGA
* * * * **
6131216 GTCTACTCCGCTGCAACCTCAGGGAGATAAGA-C-CTGATACG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * *
6131257 ATCTACTCTACTG-ACACTTCAGAGAGATATGATCTATTA-TTGA
1 ATCTACTCCACTGCA-ACTTCAGGGAGATAAGATCTCTCATTTGA
* * * ** *
6131300 ATCCACTCCACTACAACTTTAGGGAGATGGGAT-TACTGGC-TCT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* * *
6131344 ATCTACTCCACTGGAAAC-TCAGGGAGATAAGAT-TCACCATCTTCA
1 ATCTACTCCACT-GCAACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * * * *
6131389 GTATGC-CCTACTTCAACTTCAGGGGGATAAGA-CTTCCTC-TCTCA
1 ATCTACTCC-ACTGCAACTTCAGGGAGATAAGATC-T-CTCATTTGA
* ** * * * * * **
6131433 GTCTGTTCCGCTGTAACCTT-AGGAAGATAAGA-C-ATGATGCG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * * *
6131474 ATATACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * *
6131518 ATCTATTCCTCTACAACTTCAGGGAGATGAGAT-TACT-AGCTTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCA--TTTGA
* * *
6131562 ATCTAATCCACTGCAAAC-TCAGGGAGATAAGAT-TCACTATCTTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTCTC-AT-TTGA
* * * * * * * *
6131607 GTCTGCCCCAGTTCAACTTCAAGGG-GATAA-AACT-TACTTTCTCA
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCT-CATT-TGA
* * ** * * **
6131651 GTCTGCTCCGTTGCAACCTT-AGGGAAATAAG-GC-CTGC-TGCG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCT-CATTTGA
* * * * *
6131692 ATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * **
6131736 ATCCACTCAACTGCAACTTTAGGGAGATGGGAT-TGCTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
** * *
6131780 ATCTACTCCTTTGCAAAC-TCAGGGAGATAAGAT-TCACCATTTTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCA-TTTGA
* * * * * ** *
6131825 GTCTGCCCCACTTCAACTTTTAGGG-GATAAGA-CT-TGTTTTCTCA
1 ATCTACTCCACTGCAAC-TTCAGGGAGATAAGATCTCT-CATT-TGA
* * * * * * * *
6131869 GTTTGCTGCGCTGCAACCTCAGGGAGATAAGA-C-CTGATGTG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * *
6131910 ATCTACTCTACTGCAACTTCAGAGAGATAGGATATATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * *
6131954 ATCCGCTCCACTGCAACTTCAGCGAGATGAGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* * *
6131998 ATCTACTCCACTCCAAAC-TCATGGAGATAAGATTTGC-CATATTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* * ** * * *
6132043 ATCTGCTCCACTACTGCTTAAAGGG-GATAAGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAACTT-CAGGGAGATAAGATCTCT-CATT-TGA
* * ** * * **
6132087 TTCTGCTCTGCTGTAACCTT-AGGGAGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * * *
6132128 ATCTACTCTACTGTAACTTGAGAGAGACAAGATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * *
6132172 ATCTGCTCCTCTACAACTTCAGGGAGATGAGAT-TACTAAATTTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT-CATTTGA
* * * *
6132217 ACCTACTCCACTGCAAAC-TCAAGGAGATAAGAT-TCACTATCTTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTCTC-AT-TTGA
* * * * * *
6132262 GTCTGCCCCACTTCAACTTCAAGGG-GATAAGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCT-CATT-TGA
* * * * * **
6132306 GTCTGCTCCGCTGCAACCTCAGGGAAATAAGA-C-CTGC-TACG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCT-CATTTGA
* * * * *
6132347 ATATACTCTACTGCAACTTCAGTGAGATAAGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * **
6132391 AT-TCGCTCCACAGTAACTTTAGGGAGATGGGAT-TGCTGGC-TTT-A
1 ATCT-ACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
** * *
6132435 ATCTACTCCTTTGCAAAC-TCAGGGAGATAAGAT-TCACCATTTTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCA-TTTGA
* * * * ** * * *
6132480 GTCTGCCCCACTTCAACTTTTGGGGGATAAGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCT-CATT-TGA
* * * * * * * **
6132524 GTTTGCTCCGCTGCAACCTCCGGGAGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * * *
6132565 ATTTACTCTACTGCAACTTCAGAGAGATAGGTTCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * ** *
6132609 ATCCGCTCCACTACAACTTCA-GGAGATGGGAT-TATTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* * * *
6132652 ATCTACTCCACCGCAAAC-TCAAGGAGATAAGATTTGC-CATCTTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCAT-TTGA
* * * * * * * * *
6132697 GTATGC-CCACTTCAACTTCTGGGGGATTAGA-CT-TGCTTTTTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCT-C-ATTTGA
* * * * * * **
6132740 GTCTACTCTATTGTAACCTT-AGGGATATAAGA-CT-TGATGCG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * * ** * * *
6132781 ATCAACTCTACAGCAACTTTAAAGAGATAAGATCTGTTATTCGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * **
6132825 AT-TCGCTTCATTACAACTTCAGGGAGATGGGAT-TACTGGC-TTT-A
1 ATCT-ACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
** * * *
6132869 ATCTACTCCTTTGCAAAC-TAAGGGAGATAAGAT-TCACCATCTTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * * * *
6132914 GTATGCT-CACTTCAACTTCAGGGGGATAAGA-CT-TACTTTCTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCT-CATT-TGA
* * * * * * * **
6132957 GTCTGCTCCGCTGCAACCTCAAGGATATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * *
6132998 ATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
***
6133042 AT-TCACTCCACTGCAACTTCAGGGAGACGGGAT-TACTGGC-TTT-A
1 ATCT-ACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* *
6133086 ATCTACTCCACTGCAAAC-TCAGGGAGATAAGATTTGC-CATCTTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCAT-TTGA
* * * * * * * *
6133131 GTATGC-CAACTTCAACTTCAGGGGGATAAGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCT-CATT-TGA
* * * **
6133174 GTCTAAT-CAGCTGCAACCTT-AGGGAGATAAGA-C-CTGATGCG-
1 ATCTACTCCA-CTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * * *
6133215 ATCAACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * *** *
6133259 AT-TCGCTCCACTACAACTTCAGGGAGACGGGAT-TACTGACTTT-A
1 ATCT-ACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCA-TTTGA
* * *
6133303 ATCTACTCCACTGCAAATTCAGGGAGATAAGAT-TCAACATCTTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * *
6133348 ATATGC-CCACTTCAACTTCA-GGAGGATAAGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAACTTCAGGGA-GATAAGATCTCT-CATT-TGA
* * * * * ***
6133391 GTCTAATCCGCTGCAACCTT-AGGGATATAAGA-CT-TGAAGCG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * ** * * * * *
6133432 ATCCACTCTACAACAACTTTAGAGAGATAAGATCTGTTATTCGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * ** *
6133476 ATCCGCTCC-CTTGCAAGTTCAGGGAGATGGGAT-TAATGGC-TTT-A
1 ATCTACTCCAC-TGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* *
6133520 ATCTACTCCACTACAAAC-TCAGGGAGATAAGAT-TCATCATCTTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * * * **
6133565 GTATGC-CCACTTCAACTTCAGGGGGATAAGA-CT-TACTTTCTCC
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCT-CATT-TGA
* * * * * * **
6133608 GTCTGCTCCGCTGCAACCTCAGGGGGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * * *
6133649 ATCAACTCTACTGCAATTTCAGGGATATATGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
**
6133693 ATCCGCTCCACTGCAACTTCAGGGAGATAAGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* *
6133737 ATCTACTCCACTACAAAC-TCAGGGAGATAAGATTTGC-CATATTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* * ** * * *
6133782 ATCTGCTCCACTACTGCTTCAAGGG-TATAAGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCT-CATT-TGA
* * * * * **
6133826 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * *
6133867 ATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * * *
6133911 ATCCGCTACACTGCAACTTCAAGGAGATGAGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* *
6133955 ATCTACTCCAC-GCAAAC-TCAGGGAGATAAGAT-TCACCATATTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * * *
6133999 GTCTACCCCACTTCAACTTCAAGGG-GATTAGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCT-CATT-TGA
* * * * **
6134043 ATCTGCTCCGCTGCAACCTCAGGGAGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * ** * * *
6134084 ATCTACTCTACTGCAACTTTAAAGAGATAATATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * **
6134128 ATC-AGTTTCATTGCAACTTCAGGGAGATGGGAT-TACTGGC-TTT-A
1 ATCTA-CTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* * *
6134172 ATCTACCCCACTGCAAAC-TCAGGGAGATAAGAT-TCACCATCTTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * *
6134217 GTCTGCCCCACTGTAACTTCAAGGG-GATAAGACTTTCTTTC-TTTG-
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGA---TCTCTCATTTGA
* * * * * * * * **
6134262 -TCTGCTCCGCTGCAGCATAAGGAACATAAGA-C-CTGATACG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * * *
6134302 ATCTACTCTGCTGCAACTTCAGAGAGATAAGATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * * *
6134346 ATCCGCTCCATTGTAACTTCAGGGAGATAGGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* *
6134390 ATCTA-TCCCACTGCAAACTT-GGGGAGATAAGATTTGC-CATCTTTG-
1 ATCTACT-CCACTGC-AACTTCAGGGAGATAAGATCT-CTCA--TTTGA
* * * * * * *
6134435 ATATGCTCAACTACTACTTCAAGGG-GATAAGA-CT-TCCTTTCTCA
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCT-CATT-TGA
* * ** * * **
6134479 GTCTGCTCCGA-TTTAACCTCAGGGAGATAAGA-C-CTGATGCG-
1 ATCTACTCC-ACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * *
6134520 ATCTACTCTACTGTAACTTCAGAGAGATAGGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
*** *
6134564 AT-TCACTCCACTGCAACTTCAGGGAGACGGGATCACTGGC-TTT-A
1 ATCT-ACTCCACTGCAACTTCAGGGAGATAAGATCTCT--CATTTGA
* *
6134608 ATCTACTCCTCTGCAAAC-TCAGGGAGATAAGATTTGC-CATCTTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* * * ** * *
6134653 ATTTGCTCCACTACTGCTT-AGGGAGATCAGATCTGCTTC-TTCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-C-TCATTTGA
* * * * * * **
6134696 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGA-C-GTGATACG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * *
6134737 ATCAACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * *
6134781 TTCCACTCCACTACAACTTC-GAGAGATTA-ATTTCT-AGCTTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCA--TTTGA
* ** *
6134823 ATGTACTCCACTGCAAAC-TCAGGGAGATAAGAT-TGACAATCTTTA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTCTC-AT-TTGA
* * * * * *
6134868 GTCTACCCCACTTCATCTTCAGTGG-GATAAGA-CT-TGCTTTCTTA
1 ATCTACTCCACTGCAACTTCAG-GGAGATAAGATCTCT-CATT-TGA
* * ** * * * **
6134912 GTCTTCTCTGCTGTAACCTT-AGGGATATAAGA-CT-TGATGCG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * *
6134953 ATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * *
6134997 ATCCGCTCCATTGCAACTT-ATGGGAGATGAGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCA-GGGAGATAAGATCT-CT--CATTTGA
* * * *
6135041 ATCTACTCCACTGTAAAC-TCAGAGAGATAAGAT-TCACCATCTTCA
1 ATCTACTCCACTG-CAACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * * * *
6135086 GTCTACCCCACTTCAACTTCAGGGGGATAGGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCT-CATT-TGA
* * ** * * * * **
6135130 GTCTGCTCCGTTACAACCTCAGGGAGATAATA-C-CTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * ** * *
6135171 ATCTACTCTACTGCTACTTCAGAGAGATTGGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * **
6135215 ATCCGCTCCACTACAACTTCAGGGAGATGGGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* * *
6135259 ATCTACTCCATTGGAAACTT-AGGGAGATAAGATTTAC-CATCTTCG-
1 ATCTACTCCACT-GCAACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* * ** * ** *
6135304 ATCTGCTCCACTACTGCTTCAAGGG-GATAATA-CT-TGTTTTCTTA
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCT-CATT-TGA
* * * * * * **
6135348 GTCTGCTCCTCTGCAACCTCAGGGAGATAACA-C-CTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * *
6135389 ATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * *
6135433 ATCCGCTCCACTGCAACTTCAGTGAGATGAGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* *
6135477 ATCTACTCCACTACAAAC-TCAGGGAGATAAGATTTGC-CATATTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* * ** * *
6135522 ATCTGCTCCACTACTGCTTCAAGGG-GATAAGA-CT-TGCTTTCTCA
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCT-CATT-TGA
* * * * * **
6135566 TTCTGCTCCGCTGTAACCTT-AGGGAGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAA-CTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * *
6135607 ATCTACTCTACTGCAACTTCAGAGAGACAAGATATGTTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * **
6135651 ATCTGCTCCACTACAACTTCAGGGAGAT-GGATACTAGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGAT-CTCTCATTTGA
* *
6135693 ATCTAAC-CCACTGCAAAC-TCAGGGAGATAAGAT-TCGCAATCTTCA
1 ATCT-ACTCCACTGC-AACTTCAGGGAGATAAGATCTCTC-AT-TTGA
* * * * * * *
6135738 GTCTACCCCACTTCAACTTCCGGGGGATAAGA-CT-TGCTTTCTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCT-CATT-TGA
* * ** * **
6135782 GTCTTCTCCACTATAACCTT-AGGG-GTATAAGA-CT-TGATGCG-
1 ATCTACTCCACTGCAA-CTTCAGGGAG-ATAAGATCTCTCATTTGA
* * * * * *
6135823 ATCTACTCTACTGCAACTTCAGAGAGATAGGATCTGTTATTTAA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * ** **
6135867 ATCCGCTCCACTACAACTTCAGGGAGATGGGAGTACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGA-T-CTCTCATTTGA
* * *
6135911 ATCTACTCCACTGCAAAC-TCAGGGAGATAGGAT-TCACCATCTTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * * * *
6135956 GTCTGCCCCACTTCAACTTCAGGGGGATAAGA-CT-TACTTTCTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCT-CATT-TGA
* * * * * * **
6136000 GTCTGCTCCGCTGCAACCTCAGGGATATAAGA-C-CTGACGTG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * * *
6136041 ATCGACTCTACTGCTACTTCAGAGAGATAGGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * *
6136085 ATCCGCTCCACTGCAAATTCAGGGAGATGAGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* * *
6136129 ATATACTCCACTGCAAACTT-AGGGAGATAAGATTTGTCATCTTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTCTCAT-TT-GA
* * ** * *
6136174 ATCTGCTCCACTACTTCTTCAAGGG-GATAAGA-CT-TACTTTCTCA
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCT-CATT-TGA
* * * * * * **
6136218 GTCTGCTCCGCTGCAACCTCAGTGAGATAAG-TC-CTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * *
6136259 ATCTATTCTACTGCAACTTCAGAGAGATATGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
** * * * *
6136303 ATCCGCTCCACTGTAAATTTAGGGAGAT-GGAAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAG-ATCT-CT--CATTTGA
*
6136347 ATCTACTCCACTGCAAAC-TCAGGGAGATAAGATTTGC-CATCTTCG-
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCT-CTCAT-TT-GA
* * **
6136392 ATCTGCTCCACTACTGCTT-AGGGAGATAAGATCTGCTTC-TTTG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-C-TCATTTGA
* * * * * **
6136435 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * *
6136476 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCTACT-ATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CTCATTTGA
** * * *
6136520 ATCCGCTCCGCTGCAACTTTAGGGAGATGAGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* *
6136564 ATCTACTCCACTGCAAAC-TCAGGGAGATAAGAT-TCACAATCTTCA
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGATCTCTC-AT-TTGA
* * * * * * * * *
6136609 GTCTGCCCCTCTTCAACTTTAGGGGGATAAGA-CT-TACTTTCTCA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCT-CATT-TGA
* * * * * * **
6136653 GTCTGCTCCGCTGCAACCTCAGGAAGATAAGA-C-CTTATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * *
6136694 ATCTACTCTACTGCAACTTCTA-AGAGATAAGATCTGTTATTTGA
1 ATCTACTCCACTGCAACTTC-AGGGAGATAAGATCTCTCATTTGA
** * * * **
6136738 ATCCGCTCCATTGTAACTTTAGGGAGATGGGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
* * * * * *
6136782 ATCTACCCCACTGTAAAC-TGAGGGAGGTAAGAT-TCACCATATTCA
1 ATCTACTCCACTG-CAACTTCAGGGAGATAAGATCTC-TCAT-TTGA
* * * * * * * * * *
6136827 GTTTGCCCCACTTCAACTTCAGGGGGATATGA-CTCGCTTTCTTA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATT-TGA
* * * * * * **
6136871 GTCTGCTCCGCTACAACATCAGGGAGATAAGA-C-CTGATGCG-
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* * * * * * *
6136912 ATCTACTCTA-TTCAACTTTAGAGAGATAGGATCTATTATTTGA
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
* *
6136955 ATCTGCTCCACTGCAACTTCAGGGAGATGAGAT-TACTGGC-TTT-A
1 ATCTACTCCACTGCAACTTCAGGGAGATAAGATCT-CT--CATTTGA
6136999 ATCTACTCCACT-CAAAC-TCAGGGAGATAAGAT
1 ATCTACTCCACTGC-AACTTCAGGGAGATAAGAT
6137031 TTGGCATCTT
Statistics
Matches: 13606, Mismatches: 4313, Indels: 3283
0.64 0.20 0.15
Matches are distributed among these distances:
39 5 0.00
40 154 0.01
41 2049 0.15
42 323 0.02
43 1568 0.12
44 7050 0.52
45 2225 0.16
46 205 0.02
47 19 0.00
48 7 0.00
49 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (44 bp):
ATCTACTCCACTGCAACTTCAGGGAGATAAGATCTCTCATTTGA
Found at i:6124669 original size:85 final size:85
Alignment explanation
Indices: 6124563--6124847 Score: 252
Period size: 85 Copynumber: 3.3 Consensus size: 85
6124553 GCTTCTTCGG
*
6124563 TCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGA
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGA
6124628 GATAAGATCTGTTATTTGAA
66 GATAAGATCTGTTATTTGAA
* * * ** * * * * * **
6124648 TCCGCTCCACTGTAACTTCAGGGAGATAAGATTTCCCATCTTCGATCTGCTCCACTACTGCTT-A
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGACGT--GA--TGCGATCTACTCTACTGCAACTTCA
* * * *
6124712 GGGAGATAATATCTGCTT-TTCCG-G
62 GAGAGATAAGATCTG-TTATT-TGAA
** * * * *
6124736 TCTGCTCTGCTGTAACCTGAGAGAGATAAGACGTGATGTGATCTACTCTACTGCAACTTCAGAGA
1 TCTGCTCCACTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGA
*
6124801 GATAAGATCTATTATTTGAA
66 GATAAGATCTGTTATTTGAA
* * *
6124821 TCTGCTCCATTGCAACTTCTGGGAGAT
1 TCTGCTCCACTGCAACCTCAGGGAGAT
6124848 GGGATTACTG
Statistics
Matches: 145, Mismatches: 46, Indels: 18
0.69 0.22 0.09
Matches are distributed among these distances:
84 19 0.13
85 62 0.43
86 1 0.01
87 1 0.01
88 42 0.29
89 20 0.14
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (85 bp):
TCTGCTCCACTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGA
GATAAGATCTGTTATTTGAA
Found at i:6124690 original size:173 final size:173
Alignment explanation
Indices: 6124479--6124847 Score: 562
Period size: 173 Copynumber: 2.1 Consensus size: 173
6124469 CCTTAATCTA
* **
6124479 CTCCACTGCAAAC-TCAAGGAGATAAGATTTGTCATCTTCGATCTGCTCCACTACTGCTTAGGGA
1 CTCCACTG-AAACTTCAGGGAGATAAGATTTCCCATCTTCGATCTGCTCCACTACTGCTTAGGGA
*
6124543 GATAAGATATGCTTCTT-CGGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCT
65 GATAAGATATGCTT-TTCCGGTCTGCTCCGCTGCAACCTCAGAGAGATAAGACGTGATGCGATCT
*
6124607 ACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCG
129 ACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCG
*
6124652 CTCCACTGTAACTTCAGGGAGATAAGATTTCCCATCTTCGATCTGCTCCACTACTGCTTAGGGAG
1 CTCCACTGAAACTTCAGGGAGATAAGATTTCCCATCTTCGATCTGCTCCACTACTGCTTAGGGAG
* * * * * *
6124717 ATAATATCTGCTTTTCCGGTCTGCTCTGCTGTAACCTGAGAGAGATAAGACGTGATGTGATCTAC
66 ATAAGATATGCTTTTCCGGTCTGCTCCGCTGCAACCTCAGAGAGATAAGACGTGATGCGATCTAC
*
6124782 TCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCTG
131 TCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCG
* * *
6124825 CTCCATTGCAACTTCTGGGAGAT
1 CTCCACTGAAACTTCAGGGAGAT
6124848 GGGATTACTG
Statistics
Matches: 178, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
172 5 0.03
173 173 0.97
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (173 bp):
CTCCACTGAAACTTCAGGGAGATAAGATTTCCCATCTTCGATCTGCTCCACTACTGCTTAGGGAG
ATAAGATATGCTTTTCCGGTCTGCTCCGCTGCAACCTCAGAGAGATAAGACGTGATGCGATCTAC
TCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCG
Found at i:6124890 original size:173 final size:173
Alignment explanation
Indices: 6124479--6124896 Score: 473
Period size: 173 Copynumber: 2.4 Consensus size: 173
6124469 CCTTAATCTA
* *** * * * ** *
6124479 CTCCACTGCAAAC-TCAAGGAGATAAGATTTGTCATCTTCGATCTGCTCCACTACTGCTTAGGGA
1 CTCCACTGC-AACTTCAGGGAGATAAGATTACCCATCTTCAATCTACCCCACTACAACTCAGGGA
*
6124543 GATAAGATATGCTTCTTCGGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCTA
65 GATAAGATATGCTTCTTCGGTCTGCTCCGCTGCAACCTCAGAGAGATAAGACGTGATGCGATCTA
*
6124608 CTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCG
130 CTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCG
* * * * * ** *
6124652 CTCCACTGTAACTTCAGGGAGATAAGATTTCCCATCTTCGATCTGCTCCACTACTGCTTAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGATTACCCATCTTCAATCTACCCCACTACAACTCAGGGAG
* * * * * *
6124717 ATAATATCTGCTT-TTCCGGTCTGCTCTGCTGTAACCTGAGAGAGATAAGACGTGATGTGATCTA
66 ATAAGATATGCTTCTT-CGGTCTGCTCCGCTGCAACCTCAGAGAGATAAGACGTGATGCGATCTA
*
6124781 CTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCTG
130 CTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCG
* * ** ** * *
6124825 CTCCATTGCAACTTCTGGGAGATGGGATTACTGA-CTTTAATTTACCCCACTACAAACTCAGGGA
1 CTCCACTGCAACTTCAGGGAGATAAGATTACCCATCTTCAATCTACCCCACTAC-AACTCAGGGA
6124889 GATAAGAT
65 GATAAGAT
6124897 TCAGCATATT
Statistics
Matches: 212, Mismatches: 30, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
172 19 0.09
173 193 0.91
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (173 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTACCCATCTTCAATCTACCCCACTACAACTCAGGGAG
ATAAGATATGCTTCTTCGGTCTGCTCCGCTGCAACCTCAGAGAGATAAGACGTGATGCGATCTAC
TCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCG
Found at i:6125236 original size:347 final size:347
Alignment explanation
Indices: 6124871--6125566 Score: 1013
Period size: 347 Copynumber: 2.0 Consensus size: 347
6124861 TTAATTTACC
* *
6124871 CCACTACAAACTCAGGGAGATAAGATTCAGCATATTCAGTCTGCCCTAATTCAACTTCAAGGGGA
1 CCACTACAAACTCAGGGAGATAAGATTCACCATATTCAGTCTGCCCCAATTCAACTTCAAGGGGA
* * * * **
6124936 TAAGACTTTCTTTCTCAGTCTGCTCTGCTGTAACATCAGAGAGATAAGACCTGATGTGATCTACT
66 TAAGACTTGCTTTCTCAGTCTGCTCCGCAGCAACATCAGAGAGATAAGACCTGATACGATCTACT
* * ** *
6125001 CTACTGCAACTTTAGAGACATAGGATCTATAATTTGAATTTGCTCCACTGTAACTTTAGGGAGA-
131 CTACTGCAACTTCAGAGACATAGAATCTATAATTTGAATCCGCTCCACTGAAACTTTAGGGAGAT
*
6125065 CGGACTCACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATC
196 CGGA-TCACTGGCTTTAATCTACTCCACTGCAAACTCAAGGAGATAAGATTTGCCATCTTCGATC
* *
6125130 TGCTCCACTACTGCTT-AGGGAGATAAGA-TCTGC-TTCTTCGGTCTGCTCCGCTGCAACCTCAG
260 TGCTCCACTACTGCTTAAGGG-GATAAGACT-TGCTTTC-TCAGTCTGCTCCGCTACAACCTCAG
* *
6125192 GGAGATAGGACGTGATGCGATCTACT
322 GGAGATAAGACCTGATGCGATCTACT
* * *
6125218 CCACTACAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGA
1 CCACTACAAACTCAGGGAGATAAGATTCACCATATTCAGTCTGCCCCAATTCAACTTCAAGGGGA
* *
6125283 TAAGACTTGCTTTCTCAGTCTGCTCCGCAGCAACGTCAGGGAGATAAGACCTGATACGATCTACT
66 TAAGACTTGCTTTCTCAGTCTGCTCCGCAGCAACATCAGAGAGATAAGACCTGATACGATCTACT
* * * *
6125348 CTACTGCTACTTCAGAGAGATTGAATCTATTATTTGAATCCGCTCCACTGAAACTTTAGGGAGAT
131 CTACTGCAACTTCAGAGACATAGAATCTATAATTTGAATCCGCTCCACTGAAACTTTAGGGAGAT
* * * * * *
6125413 GGGATTACTGGCTTTAATCTGCTCCACTGCAAACTCAAGTAGATAAGATTTTCCATTTTCGATCT
196 CGGATCACTGGCTTTAATCTACTCCACTGCAAACTCAAGGAGATAAGATTTGCCATCTTCGATCT
*
6125478 GCTCCACTACTGCTTCAAGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTACAACCTTAGGGA
261 GCTCCACTACTGCTT-AAGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTACAACCTCAGGGA
6125543 GATAAGACCTGATGCGATCTACT
325 GATAAGACCTGATGCGATCTACT
6125566 C
1 C
6125567 TACTGAAACT
Statistics
Matches: 310, Mismatches: 34, Indels: 9
0.88 0.10 0.03
Matches are distributed among these distances:
347 242 0.78
348 60 0.19
349 8 0.03
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.29
Consensus pattern (347 bp):
CCACTACAAACTCAGGGAGATAAGATTCACCATATTCAGTCTGCCCCAATTCAACTTCAAGGGGA
TAAGACTTGCTTTCTCAGTCTGCTCCGCAGCAACATCAGAGAGATAAGACCTGATACGATCTACT
CTACTGCAACTTCAGAGACATAGAATCTATAATTTGAATCCGCTCCACTGAAACTTTAGGGAGAT
CGGATCACTGGCTTTAATCTACTCCACTGCAAACTCAAGGAGATAAGATTTGCCATCTTCGATCT
GCTCCACTACTGCTTAAGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTACAACCTCAGGGAG
ATAAGACCTGATGCGATCTACT
Found at i:6125368 original size:130 final size:129
Alignment explanation
Indices: 6125082--6125354 Score: 354
Period size: 130 Copynumber: 2.1 Consensus size: 129
6125072 ACTGGCTTTA
** * **
6125082 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTA
1 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCGATCTGCCCCACTACAACTTA
* * * * *
6125147 GGGAGATAAGATCTGCTTCTTCGGTCTGCTCCGCTGCAACCTCAGGGAGATAGGACGTGATGCG
66 GGGAGATAAGATCTGCTTCTTCAGTCTGCTCCGCAGCAACCTCAGGGAGATAAGACCTGATACG
* *
6125211 ATCTACTCCACTACAAACTCAGGGAGATAAGATTCACCATCTTC-AGTCTGCCCCACTTCAACTT
1 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCGA-TCTGCCCCACTACAACTT
* *
6125275 CAGGGGGATAAGA-CTTGCTT-TCTCAGTCTGCTCCGCAGCAACGTCAGGGAGATAAGACCTGAT
65 -AGGGAGATAAGATC-TGCTTCT-TCAGTCTGCTCCGCAGCAACCTCAGGGAGATAAGACCTGAT
6125338 ACG
127 ACG
*
6125341 ATCTACTCTACTGC
1 ATCTACTCCACTGC
6125355 TACTTCAGAG
Statistics
Matches: 124, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
128 1 0.01
129 57 0.46
130 66 0.53
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (129 bp):
ATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCGATCTGCCCCACTACAACTTA
GGGAGATAAGATCTGCTTCTTCAGTCTGCTCCGCAGCAACCTCAGGGAGATAAGACCTGATACG
Found at i:6125448 original size:565 final size:565
Alignment explanation
Indices: 6124758--6125808 Score: 1538
Period size: 565 Copynumber: 1.9 Consensus size: 565
6124748 TAACCTGAGA
* **
6124758 GAGATAAGACGTGATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATC
1 GAGATAAGACCTGATACGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATC
* * * * *
6124823 TGCTCCATTGCAACTTCTGGGAGATGGGATTACTGACTTTAATTTACCCCACTACAAACTCAGGG
66 CGCTCCACTGAAACTTCTGGGAGATGGGATTACTGACTTTAATCTACCCCACTACAAACTCAAGG
* * *
6124888 AGATAAGATTCAGCATATTC-AGTCTGC-CCTAATTCAACTTCAAGGGGATAAGACTTTCTTTCT
131 AGATAAGATTCACCATATTCGA-TCTGCTCC-AATACAACTTCAAGGGGATAAGACTTGCTTTCT
* ** * * *
6124951 CAGTCTGCTCTGCTGTAACATCAGAGAGATAAGACCTGATGTGATCTACTCTACTGCAACTTTAG
194 CAGTCTGCTCCGCTACAACATCAGAGAGATAAGACCTGATGCGATCTACTCTACTGAAACTTCAG
** * *
6125016 AGACATAGGATCTATAATTTGAATTTGCTCCACTGTAACTTTAGGGAGAC-GGACTCACTGGCTT
259 AGACATAGGATCTATAATTTGAATTCACTCCACTGTAACTTCAGGAAGACAGGA-TCACTGGCTT
* *
6125080 TAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCT
323 TAATCTACTCCACTGCAAACTCAAGGAGATAACATTTGCCATCTTCGATCTGCTCCACTACTGCT
*
6125145 TAGGGAGATAAGATCTGCTTCTTCGGTCTGCTCCGCTGCAACCTCAGGGAGATAGGACGTGATGC
388 TAGGGAGATAAGATCTGCTTCTTCGGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATGC
*
6125210 GATCTACTCCACTACAAAC-TCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACT
453 GATCTACTCCACTAC-AACTTCAGAGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACT
6125274 TCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCAGCAACGTCAGG
517 TCAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCAGCAACGTCAGG
* *
6125323 GAGATAAGACCTGATACGATCTACTCTACTGCTACTTCAGAGAGAT-TGAATCTATTATTTGAAT
1 GAGATAAGACCTGATACGATCTACTCTACTGCAACTTCAGAGAGATAAG-ATCTATTATTTGAAT
* * * *
6125387 CCGCTCCACTGAAACTT-TAGGGAGATGGGATTACTGGCTTTAATCTGCTCCACTGCAAACTCAA
65 CCGCTCCACTGAAACTTCT-GGGAGATGGGATTACTGACTTTAATCTACCCCACTACAAACTCAA
* ** * * **
6125451 GTAGATAAGATTTTCCATTTTCGATCTGCTCCACTACTGCTTCAAGGGGATAAGACTTGCTTTCT
129 GGAGATAAGATTCACCATATTCGATCTGCTCCAATACAACTTCAAGGGGATAAGACTTGCTTTCT
* * *
6125516 CAGTCTGCTCCGCTACAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGAAACTTCAG
194 CAGTCTGCTCCGCTACAACATCAGAGAGATAAGACCTGATGCGATCTACTCTACTGAAACTTCAG
* * * *
6125581 AGAGATAGGATCTATTATTTGAATTCATTCCACTGTAACTTCAGGAAGACAGGATTACTGGCTTT
259 AGACATAGGATCTATAATTTGAATTCACTCCACTGTAACTTCAGGAAGACAGGATCACTGGCTTT
* *
6125646 AATCTACTCCACTGCAAACTCAAGGAGATAACATTTGTCGTCTTCGATCTGCTCCACTACTGCTT
324 AATCTACTCCACTGCAAACTCAAGGAGATAACATTTGCCATCTTCGATCTGCTCCACTACTGCTT
* * *
6125711 AGGGAGATAAGATCTGCTTCTTCGGTCTGCTCCGTTGTAACCTCAGGGAGATAAGACGTTATGCG
389 AGGGAGATAAGATCTGCTTCTTCGGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATGCG
* *
6125776 ATCTACTCTACTGCAACTTCAGAGAGATAAGAT
454 ATCTACTCCACTACAACTTCAGAGAGATAAGAT
6125809 CTGTTATTTG
Statistics
Matches: 428, Mismatches: 52, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
564 5 0.01
565 417 0.97
566 6 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (565 bp):
GAGATAAGACCTGATACGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATC
CGCTCCACTGAAACTTCTGGGAGATGGGATTACTGACTTTAATCTACCCCACTACAAACTCAAGG
AGATAAGATTCACCATATTCGATCTGCTCCAATACAACTTCAAGGGGATAAGACTTGCTTTCTCA
GTCTGCTCCGCTACAACATCAGAGAGATAAGACCTGATGCGATCTACTCTACTGAAACTTCAGAG
ACATAGGATCTATAATTTGAATTCACTCCACTGTAACTTCAGGAAGACAGGATCACTGGCTTTAA
TCTACTCCACTGCAAACTCAAGGAGATAACATTTGCCATCTTCGATCTGCTCCACTACTGCTTAG
GGAGATAAGATCTGCTTCTTCGGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATGCGAT
CTACTCCACTACAACTTCAGAGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAG
GGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCAGCAACGTCAGG
Found at i:6125675 original size:347 final size:346
Alignment explanation
Indices: 6124871--6125676 Score: 810
Period size: 347 Copynumber: 2.3 Consensus size: 346
6124861 TTAATTTACC
* * * * * * *
6124871 CCACTACAAACTCAGGGAGATAAGATTCAGCATATTCAGTCTGCCCTAATTCAACTTCAAGG-GG
1 CCACTACAAACTCAGAGAGATAAGATTCACCATCTTAAGTCT-CCCCACTTCAACTTC-AGGAAG
* * ** * * ** * * * **
6124935 ATAAGACTTTCTTTCTCAGTCTGCTCTGCTGTAACATC-AGAGAGATAAGACCTGATGTGATCTA
64 ACAAGACTTACTGGCTCAATCTACTCCACAGCAACGTCAAG-GAGATAAGACCTGATACGATCTA
* * ** *
6124999 CTCTACTGCAACTTTAGAGACATAGGATCTATAATTTGAATTTGCTCCACTGTAACTTTAGGGAG
128 CTCTACTGCAACTTCAGAGACATAGAATCTATAATTTGAATCCGCTCCACTGAAACTTTAGGGAG
*
6125064 ACGGACTCACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGAT
193 ACGGACTCACTGGCTTTAATCTACTCCACTGCAAACTCAAGGAGATAAGATTTGCCATCTTCGAT
* *
6125129 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCTTCTTCGGTCTGCTCCGCTGCAACCTCAGGG
258 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGCTTCTTCAGTCTGCTCCGCTACAACCTCAGGG
* *
6125194 AGATAGGACGTGATGCGATCTACT
323 AGATAAGACCTGATGCGATCTACT
* * **
6125218 CCACTACAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGA
1 CCACTACAAACTCAGAGAGATAAGATTCACCATCTTAAGTCT-CCCCACTTCAACTTCAGGAAGA
* * ** * * * *
6125283 TAAGACTTGCTTTCTCAGTCTGCTCCGCAGCAACGTCAGGGAGATAAGACCTGATACGATCTACT
65 CAAGACTTACTGGCTCAATCTACTCCACAGCAACGTCAAGGAGATAAGACCTGATACGATCTACT
* * * *
6125348 CTACTGCTACTTCAGAGAGATTGAATCTATTATTTGAATCCGCTCCACTGAAACTTTAGGGAGAT
130 CTACTGCAACTTCAGAGACATAGAATCTATAATTTGAATCCGCTCCACTGAAACTTTAGGGAGA-
* * * * * *
6125413 GGGA-TTACTGGCTTTAATCTGCTCCACTGCAAACTCAAGTAGATAAGATTTTCCATTTTCGATC
194 CGGACTCACTGGCTTTAATCTACTCCACTGCAAACTCAAGGAGATAAGATTTGCCATCTTCGATC
*
6125477 TGCTCCACTACTGCTTCAAGGG-GATAAGA-CTTGCTT-TCTCAGTCTGCTCCGCTACAACCTTA
259 TGCTCCACTACTGCTT--AGGGAGATAAGATC-TGCTTCT-TCAGTCTGCTCCGCTACAACCTCA
6125539 GGGAGATAAGACCTGATGCGATCTACT
320 GGGAGATAAGACCTGATGCGATCTACT
* * * ** * *
6125566 CTACT-GAAACTTCAGAGAGATAGGA-TCTATTAT-TTGAATTCAT-TCCACTGT-AACTTCAGG
1 CCACTACAAAC-TCAGAGAGATAAGATTC-ACCATCTT-AAGTC-TCCCCACT-TCAACTTCAGG
* * *
6125626 AAGACAGGA-TTACTGGCTTTAATCTACTCCACTGCAAAC-TCAAGGAGATAA
61 AAGACAAGACTTACTGGC-TCAATCTACTCCACAGC-AACGTCAAGGAGATAA
6125677 CATTTGTCGT
Statistics
Matches: 390, Mismatches: 55, Indels: 28
0.82 0.12 0.06
Matches are distributed among these distances:
346 8 0.02
347 289 0.74
348 88 0.23
349 5 0.01
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (346 bp):
CCACTACAAACTCAGAGAGATAAGATTCACCATCTTAAGTCTCCCCACTTCAACTTCAGGAAGAC
AAGACTTACTGGCTCAATCTACTCCACAGCAACGTCAAGGAGATAAGACCTGATACGATCTACTC
TACTGCAACTTCAGAGACATAGAATCTATAATTTGAATCCGCTCCACTGAAACTTTAGGGAGACG
GACTCACTGGCTTTAATCTACTCCACTGCAAACTCAAGGAGATAAGATTTGCCATCTTCGATCTG
CTCCACTACTGCTTAGGGAGATAAGATCTGCTTCTTCAGTCTGCTCCGCTACAACCTCAGGGAGA
TAAGACCTGATGCGATCTACT
Found at i:6125832 original size:217 final size:216
Alignment explanation
Indices: 6125211--6126635 Score: 1706
Period size: 217 Copynumber: 6.6 Consensus size: 216
6125201 ACGTGATGCG
* ** * * **
6125211 ATCTACTCCACTACAAACTCAGGGAGATAAGATTCACCATCTTC-AGTCTGCCCCACTTCAACTT
1 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGA-TCTGCTCCACTACTGCTT
* * * *
6125275 CAGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCAGCAACGTCAGGGAGATAAGACCTGATAC
65 CA-GGGGATAAGACTTGCTTT-TCAGTCTGCTCCGCTGTAACCTCAGGGAGATAAGACCTGATGC
* * *
6125340 GATCTACTCTACTGCTACTTCAGAGAGAT-TGAATCTATTATTTGAATCCGCTCCACTGAAACTT
128 GATCTACTCTACTGCAACTTCAGAGAGATAAG-ATCTATTATTTGAATCCGCTCCACTGCAACTT
*
6125404 TAGGGAGATGGGATTACTGGCTTTA
192 CAGGGAGATGGGATTACTGGCTTTA
* * * * *
6125429 ATCTGCTCCACTGCAAACTCAAGTAGATAAGATTTTCCATTTTCGATCTGCTCCACTACTGCTTC
1 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTC
** *
6125494 AAGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTACAACCTTAGGGAGATAAGACCTGATGCG
66 -AGGGGATAAGACTTGCTTT-TCAGTCTGCTCCGCTGTAACCTCAGGGAGATAAGACCTGATGCG
* * * ** *
6125559 ATCTACTCTACTGAAACTTCAGAGAGATAGGATCTATTATTTGAATTCATTCCACTGTAACTTCA
129 ATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCA
* **
6125624 GGAAGACAGGATTACTGGCTTTA
194 GGGAGATGGGATTACTGGCTTTA
* * * *
6125647 ATCTACTCCACTGCAAACTCAAGGAGATAACATTTGTCGTCTTCGATCTGCTCCACTACTGCTT-
1 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTC
* * * *
6125711 AGGGAGATAAGA-TCTGCTTCTTCGGTCTGCTCCGTTGTAACCTCAGGGAGATAAGACGTTATGC
66 AGGG-GATAAGACT-TGCTT-TTCAGTCTGCTCCGCTGTAACCTCAGGGAGATAAGACCTGATGC
* *
6125775 GATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGCAACTTT
128 GATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTC
* * *
6125840 AGGGAGATGAGATTACTCGTTTTA
193 AGGGAGATGGGATTACTGGCTTTA
*
6125864 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACCACTGCTT-
1 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTC
* * *
6125928 AGGGAGATAAGA-TCTGCTTCTTC-GGCTTGCTCCGCTGTAACCTCAGAGAGATAAGACGTGATG
66 AGGG-GATAAGACT-TGCTT-TTCAGTC-TGCTCCGCTGTAACCTCAGGGAGATAAGACCTGATG
* * * *
6125991 CGATCTACTCTACTGCAACTTCGGAGAGATAAGATCTGTTATTTGAATCTGCTCCATTGCAACTT
127 CGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTT
6126056 CAGGGAGATGGGATTACT-GCTTTTA
192 CAGGGAGATGGGATTACTGGC-TTTA
* * * * * ** * **
6126081 ATTTACCCCATTGTAAACTCAGGGAGATAATATTCACCATCTTC-AGTCTGC-CCTACTTCAACT
1 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGA-TCTGCTCC-ACTACTGCT
* * * *
6126144 TCAAGGGGATAAGACTTTCTTTCTCAGTCTACTCCGCTGCAACATCAGGGAGATAAGACCTGATG
64 TC-AGGGGATAAGACTTGCTTT-TCAGTCTGCTCCGCTGTAACCTCAGGGAGATAAGACCTGATG
** *
6126209 CGATCTACTCTACTGCAACTTCAGAGAGATAAGATCGGTTATTTGAAT-CGCTCCATTGCAACTT
127 CGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTT
6126273 CAGGGAGATGGGATTACTGGCTTTA
192 CAGGGAGATGGGATTACTGGCTTTA
* * * *
6126298 ATCTACACCACTACAAACTCGGGGAGATAAGATTTAG-CATCTTCGATCTGTTCCACTACTGCTT
1 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTT-GCCATCTTCGATCTGCTCCACTACTGCTT
* * * *
6126362 CAAAGGGATAAGACTTGCTTTTCCAATCTGCTCCGCAGTAACCTTAGGGAGATAAGACCTGATGC
65 C-AGGGGATAAGACTTGCTTTT-CAGTCTGCTCCGCTGTAACCTCAGGGAGATAAGACCTGATGC
* * **
6126427 GATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATAATTTGAATTTGCTCCACTGCAACTTC
128 GATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTC
* * * * *
6126492 AGAGAGACGGGCTCACGGGCTTTA
193 AGGGAGATGGGATTACTGGCTTTA
* *
6126516 ATCTACTCCATTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTA
1 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTC
** * * *
6126581 AGGATATAAGA-TCTGCTTCTTCAGTCTGCTCCGCTGTAAACTTAGAGAGATAAGA
66 AGGGGATAAGACT-TGCTT-TTCAGTCTGCTCCGCTGTAACCTCAGGGAGATAAGA
6126636 TTCACCATCT
Statistics
Matches: 1047, Mismatches: 136, Indels: 49
0.85 0.11 0.04
Matches are distributed among these distances:
216 13 0.01
217 593 0.57
218 431 0.41
219 10 0.01
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (216 bp):
ATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTC
AGGGGATAAGACTTGCTTTTCAGTCTGCTCCGCTGTAACCTCAGGGAGATAAGACCTGATGCGAT
CTACTCTACTGCAACTTCAGAGAGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGG
GAGATGGGATTACTGGCTTTA
Found at i:6125840 original size:435 final size:435
Alignment explanation
Indices: 6125211--6126635 Score: 1744
Period size: 435 Copynumber: 3.3 Consensus size: 435
6125201 ACGTGATGCG
* * *
6125211 ATCTACTCCACTACAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTC
1 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCTCCACTACAACTTC
* * * *
6125276 AGGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCAGCAACGTCAGGGAGATAAGACCTGATACG
66 AGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCG
* * * *
6125341 ATCTACTCTACTGCTACTTCAGAGAGAT-TGAATCTATTATTTGAATCCGCTCCACTGAAACTTT
131 ATCTACTCTACTGCAACTTCAGAGAGATAAG-ATCTGTTATTTGAATCCGCTCCACTGCAACTTT
* * * * *
6125405 AGGGAGATGGGATTACTGGCTTTAATCTGCTCCACTGCAAACTCAAGTAGATAAGATTTTCCATT
195 AGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATC
*
6125470 TTCGATCTGCTCCACTACTGCTTCAAGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTACAAC
260 TTCGATCTGCTCCACTACTGCTTCAAGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTATAAC
*
6125535 CTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGAAACTTCAGAGAGATAGGATCTATTATT
325 CTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATT
* *
6125600 TGAATTCATTCCACTGTAACTTCAGGAAGACAGGATTACTGGCTTTA
390 TGAATTC-TTCCACTGCAACTTCAGGAAGACGGGATTACTGGCTTTA
* * *** * **
6125647 ATCTACTCCACTGCAAACTCAAGGAGATAACATTTGTCGTCTTC-GATCTGCTCCACTACTGCTT
1 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTGCTCCACTACAACTT
* * * * *
6125711 -AGGGAGATAAGA-TCTGC-TTCTTCGGTCTGCTCCGTTGTAACCTCAGGGAGATAAGACGTTAT
65 CAGGGAGATAAGACT-TGCTTTC-TCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGAT
6125773 GCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGCAACT
128 GCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGCAACT
* * * *
6125838 TTAGGGAGATGAGATTACTCGTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCA
193 TTAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCA
* *
6125903 TCTTCGATCTGCTCCACCACTGCTT--AGGGAGATAAGA-TCTGC-TTCTTC-GGCTTGCTCCGC
258 TCTTCGATCTGCTCCACTACTGCTTCAAGGG-GATAAGACT-TGCTTTC-TCAGTC-TGCTCCGC
* * * * * *
6125963 TGTAACCTCAGAGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCGGAGAGATAAGATCT
319 TATAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCT
* * * *
6126028 GTTATTTGAA-TCTGCTCCATTGCAACTTCAGGGAGATGGGATTACT-GCTTTTA
384 ATTATTTGAATTCT--TCCACTGCAACTTCAGGAAGACGGGATTACTGGC-TTTA
* * * * * *
6126081 ATTTACCCCATTGTAAACTCAGGGAGATAATATTCACCATCTTCAGTCTGC-CCTACTTCAACTT
1 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCTCC-ACTACAACTT
* * *
6126145 CAAGGG-GATAAGACTTTCTTTCTCAGTCTACTCCGCTGCAACATCAGGGAGATAAGACCTGATG
65 C-AGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATG
* *
6126209 CGATCTACTCTACTGCAACTTCAGAGAGATAAGATCGGTTATTTGAAT-CGCTCCATTGCAACTT
129 CGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGCAACTT
* * * * *
6126273 CAGGGAGATGGGATTACTGGCTTTAATCTACACCACTACAAACTCGGGGAGATAAGATTTAGCAT
194 TAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCAT
* * *
6126338 CTTCGATCTGTTCCACTACTGCTTCAAAGGGATAAGACTTGCTTT-TCCAATCTGCTCCGC-AGT
259 CTTCGATCTGCTCCACTACTGCTTCAAGGGGATAAGACTTGCTTTCT-CAGTCTGCTCCGCTA-T
*
6126401 AACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATA
322 AACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATT
* * *
6126466 ATTTGAATT-TGCTCCACTGCAACTTCA-GAGAGACGGGCTCACGGGCTTTA
387 ATTTGAATTCT--TCCACTGCAACTTCAGGA-AGACGGGATTACTGGCTTTA
* ** **
6126516 ATCTACTCCATTGCAAACTCAGGGAGATAAGATTTGCCATCTTC-GATCTGCTCCACTACTGCTT
1 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTGCTCCACTACAACTT
* * * * * *
6126580 -AAGGATATAAGA-TCTGC-TTCTTCAGTCTGCTCCGCTGTAAACTTAGAGAGATAAGA
65 CAGGGAGATAAGACT-TGCTTTC-TCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGA
6126636 TTCACCATCT
Statistics
Matches: 840, Mismatches: 117, Indels: 66
0.82 0.11 0.06
Matches are distributed among these distances:
432 1 0.00
433 23 0.03
434 299 0.36
435 445 0.53
436 72 0.09
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (435 bp):
ATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCTCCACTACAACTTC
AGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCG
ATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGCAACTTTA
GGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTACCATCT
TCGATCTGCTCCACTACTGCTTCAAGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTATAACC
TTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTT
GAATTCTTCCACTGCAACTTCAGGAAGACGGGATTACTGGCTTTA
Found at i:6126524 original size:652 final size:652
Alignment explanation
Indices: 6125211--6126635 Score: 1841
Period size: 652 Copynumber: 2.2 Consensus size: 652
6125201 ACGTGATGCG
* ** * * **
6125211 ATCTACTCCACTACAAACTCAGGGAGATAAGATTCACCATCTTC-AGTCTGCCCCACTTCAACTT
1 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGA-TCTGCTCCACTACTGCTT
* * * * *
6125275 CAGGGGGATAAGA-CTTGCTT-TCTCAGTCTGCTCCGCAGCAACGTCAGGGAGATAAGACCTGAT
65 -AGGGAGATAAGATC-TGCTTCT-TCAGTCTGCTCCGCTGTAACCTCAGAGAGATAAGACCTGAT
* *
6125338 ACGATCTACTCTACTGCTACTTCAGAGAGATTGAATCTATTATTTGAATCCGCTCCACTGAAACT
127 ACGATCTACTCTACTGCAACTTCAGAGAGATAGAATCTATTATTTGAATCCGCTCCACTGAAACT
* * * * **
6125403 TTAGGGAGATGGGATTACTGGCTTTAATCTGCTCCACTGCAAACTCAAGTAGATAAGATTTTCCA
192 TCAGGGAGATGGGATTACTGGCTTTAATCTACCCCACTGCAAACTCAAGGAGATAAGATTCACCA
* ** *
6125468 TTTTCGATCTGCTCCACTACTGCTTCAAGGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTACA
257 TCTTCGATCTGCTCCACTACAACTTCAAGGGGATAAGACTTGCTTTCTCAGTCTACTCCGCTACA
* * * *
6125533 ACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGAAACTTCAGAGAGATAGGATCTATTA
322 ACATCAGGGAGATAAGACCTGATGCGATCTACTCTACTGAAACTTCAGAGAGATAAGATCGATTA
* * * *
6125598 TTTGAATTCATTCCACTGTAACTTCAGGAAGACAGGATTACTGGCTTTAATCTACTCCACTGCAA
387 TTTGAATTCACTCCACTGCAACTTCAGGAAGACAGGATTACTGGCTTTAATCTACACCACTACAA
* *
6125663 ACTCAAGGAGATAACATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGC
452 ACTCAAGGAGATAACATTTGTCATCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGC
** ** * *
6125728 TTCTTCGGTCTGCTCCGTTGTAACCTCAGGGAGATAAGACGTTATGCGATCTACTCTACTGCAAC
517 TTCTTCAATCTGCTCCGCAGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAAC
* * * * * * *
6125793 TTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCACTGCAACTTTAGGGAGATGAGATTACTC
582 TTCAGAGAGATAAGATCTATAATTTGAATCCGCTCCACTGCAACTTCAGAGAGACGAGATCACGC
*
6125858 GTTTTA
647 GCTTTA
*
6125864 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACCACTGCTTA
1 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTA
* * *
6125929 GGGAGATAAGATCTGCTTCTTC-GGCTTGCTCCGCTGTAACCTCAGAGAGATAAGACGTGATGCG
66 GGGAGATAAGATCTGCTTCTTCAGTC-TGCTCCGCTGTAACCTCAGAGAGATAAGACCTGATACG
* * * * *
6125993 ATCTACTCTACTGCAACTTCGGAGAGATA-AGATCTGTTATTTGAATCTGCTCCATTGCAACTTC
130 ATCTACTCTACTGCAACTTCAGAGAGATAGA-ATCTATTATTTGAATCCGCTCCACTGAAACTTC
* * * * *
6126057 AGGGAGATGGGATTACT-GCTTTTAATTTACCCCATTGTAAACTCAGGGAGATAATATTCACCAT
194 AGGGAGATGGGATTACTGGC-TTTAATCTACCCCACTGCAAACTCAAGGAGATAAGATTCACCAT
* * *
6126121 CTTC-AGTCTGC-CCTACTTCAACTTCAAGGGGATAAGACTTTCTTTCTCAGTCTACTCCGCTGC
258 CTTCGA-TCTGCTCC-ACTACAACTTCAAGGGGATAAGACTTGCTTTCTCAGTCTACTCCGCTAC
* *
6126184 AACATCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCGGTT
321 AACATCAGGGAGATAAGACCTGATGCGATCTACTCTACTGAAACTTCAGAGAGATAAGATCGATT
* * * **
6126249 ATTTGAA-TCGCTCCATTGCAACTTCAGGGAGATGGGATTACTGGCTTTAATCTACACCACTACA
386 ATTTGAATTCACTCCACTGCAACTTCAGGAAGACAGGATTACTGGCTTTAATCTACACCACTACA
** * *
6126313 AACTCGGGGAGATAAGATTTAG-CATCTTCGATCTGTTCCACTACTGCTTCAAAGG-GATAAGA-
451 AACTCAAGGAGATAACATTT-GTCATCTTCGATCTGCTCCACTACTGCTT--AAGGAGATAAGAT
*
6126375 CTTGCTT-TTCCAATCTGCTCCGCAGTAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTAC
513 C-TGCTTCTT-CAATCTGCTCCGCAGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTAC
* ** * *
6126439 TGCAACTTCAGAGAGATAGGATCTATAATTTGAATTTGCTCCACTGCAACTTCAGAGAGACGGGC
576 TGCAACTTCAGAGAGATAAGATCTATAATTTGAATCCGCTCCACTGCAACTTCAGAGAGACGAGA
*
6126504 TCACGGGCTTTA
641 TCACGCGCTTTA
*
6126516 ATCTACTCCATTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTA
1 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTA
* * * *
6126581 AGGATATAAGATCTGCTTCTTCAGTCTGCTCCGCTGTAAACTTAGAGAGATAAGA
66 GGGAGATAAGATCTGCTTCTTCAGTCTGCTCCGCTGTAACCTCAGAGAGATAAGA
6126636 TTCACCATCT
Statistics
Matches: 668, Mismatches: 90, Indels: 29
0.85 0.11 0.04
Matches are distributed among these distances:
651 101 0.15
652 505 0.76
653 61 0.09
654 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (652 bp):
ATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTA
GGGAGATAAGATCTGCTTCTTCAGTCTGCTCCGCTGTAACCTCAGAGAGATAAGACCTGATACGA
TCTACTCTACTGCAACTTCAGAGAGATAGAATCTATTATTTGAATCCGCTCCACTGAAACTTCAG
GGAGATGGGATTACTGGCTTTAATCTACCCCACTGCAAACTCAAGGAGATAAGATTCACCATCTT
CGATCTGCTCCACTACAACTTCAAGGGGATAAGACTTGCTTTCTCAGTCTACTCCGCTACAACAT
CAGGGAGATAAGACCTGATGCGATCTACTCTACTGAAACTTCAGAGAGATAAGATCGATTATTTG
AATTCACTCCACTGCAACTTCAGGAAGACAGGATTACTGGCTTTAATCTACACCACTACAAACTC
AAGGAGATAACATTTGTCATCTTCGATCTGCTCCACTACTGCTTAAGGAGATAAGATCTGCTTCT
TCAATCTGCTCCGCAGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCA
GAGAGATAAGATCTATAATTTGAATCCGCTCCACTGCAACTTCAGAGAGACGAGATCACGCGCTT
TA
Found at i:6126878 original size:306 final size:307
Alignment explanation
Indices: 6126366--6126923 Score: 811
Period size: 306 Copynumber: 1.8 Consensus size: 307
6126356 CTGCTTCAAA
* * *
6126366 GGGATAAGACTTGCTTTTCCAATCTGCTCCGCAGTAACCTTAGGGAGATAAGACCTGATGCGATC
1 GGGATAAGACTTGCTTTTCCAATCTCCTCCGCAGCAACCTCAGGGAGATAAGACCTGATGCGATC
* **
6126431 TACTCTACTGCAACTTCAGAGAGATAGGATCTATAATTTGAATTTGCTCCACTGCAACTTCAGAG
66 TACTCTACTGCAACTTCAGAGAGATAGAATCTATAATTTGAATCCGCTCCACTGCAACTTCAGAG
* * *
6126496 AGACGGGCTCACGGGCTTTAATCTACTCCATTGCAAACTCAGGGAGATAAGATTTGCCATCTTCG
131 AGACGGGATCACGGGCTTTAATCTACTCCACTGCAAACTCAAGGAGATAAGATTTGCCATCTTCG
* *
6126561 ATCTGCTCCACTACTGC-T-TAAGGATATAAGA-TCTGC-TTCTTCAGTCTGCTCCGCTGTAAAC
196 ATCTACTCCACTACTGCTTCTAAGG-GATAAGACT-TGCTTTC-TCAGTCTGCTCCGCTGTAAAC
6126622 TTAGAGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGG
258 TTAGAGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGG
* * *
6126672 GGGATAAGACTTGC-TTTCTCAGTCTCCTCCGCTGCAACCTCAGGGAGATAAGACTTGATGCGAT
1 GGGATAAGACTTGCTTTTC-CAATCTCCTCCGCAGCAACCTCAGGGAGATAAGACCTGATGCGAT
* * * * * *
6126736 CTACTCTACTGCTACTTCAGAGAGATTGAATCTATTATTTGAATCCGCTCCACTGTAACTTTAGG
65 CTACTCTACTGCAACTTCAGAGAGATAGAATCTATAATTTGAATCCGCTCCACTGCAACTTCAGA
* * * * *
6126801 GAGATGGGATTACTGGCTTTAGTCTACTCCACTGCAAACTCAAGGAGATAAGATTTGCCATTTTC
130 GAGACGGGATCACGGGCTTTAATCTACTCCACTGCAAACTCAAGGAGATAAGATTTGCCATCTTC
*
6126866 GATCTACTCCACTACTGCTTCTACGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTG
195 GATCTACTCCACTACTGCTTCTAAGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTG
6126924 CAGCCTCAGG
Statistics
Matches: 221, Mismatches: 26, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
305 4 0.02
306 183 0.83
307 26 0.12
308 8 0.04
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (307 bp):
GGGATAAGACTTGCTTTTCCAATCTCCTCCGCAGCAACCTCAGGGAGATAAGACCTGATGCGATC
TACTCTACTGCAACTTCAGAGAGATAGAATCTATAATTTGAATCCGCTCCACTGCAACTTCAGAG
AGACGGGATCACGGGCTTTAATCTACTCCACTGCAAACTCAAGGAGATAAGATTTGCCATCTTCG
ATCTACTCCACTACTGCTTCTAAGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGTAAACTTA
GAGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGG
Found at i:6126922 original size:218 final size:219
Alignment explanation
Indices: 6126665--6128376 Score: 2075
Period size: 217 Copynumber: 7.9 Consensus size: 219
6126655 CCCACTTCAA
* * *
6126665 CTTC-AGGGGGATAAGACTTGCTTTCTCAGTCTCCTCCGCTGCAACCTCAGGGAGATAAGACTTG
1 CTTCTAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTG
* *
6126729 ATGCGATCTACTCTACTGCTACTTCAGAGAGATTGAATCTATTATTTGAATCCGCTCCACTGTAA
66 ATGCGATCTACTCTACTGCAACTTCAGAGAGATTGAATCTATTATTTGAATCCGCTCCACTGCAA
* *
6126794 CTTTAGGGAGATGGGATTACTGGCTTTAGTCTACTCCACTGCAAACTCAAGGAGATAAGATTTGC
131 CTTTAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGC
*
6126859 CATTTTCGATCTACTCCACTACTG
196 CATTTTCGATCTGCTCCACTACTG
* *
6126883 CTTCTACGG-GATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAGCCTCAGGGAGATAAGACCTG
1 CTTCTAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTG
* * *
6126947 ATGCGATCTACTCTACTGCTACTTCAGAGAGATTGAATCTTTTATTTGAATCCGCTCTACTGCAA
66 ATGCGATCTACTCTACTGCAACTTCAGAGAGATTGAATCTATTATTTGAATCCGCTCCACTGCAA
* * *
6127012 CTTTAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAATTTAGGGTGATAAGATTTGC
131 CTTTAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGC
*
6127077 CATTTTCGATCTGCTCCACTATTG
196 CATTTTCGATCTGCTCCACTACTG
* * * * * *
6127101 CTTCAAGGG-GATAAGTCTTGCTTTCTCAGTTTGCTCCGCTACAACCTTAGGGAGATAAAACCTG
1 CTTCTAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTG
* * * * * *
6127165 ATGCGATCTACTCTACTGTAACTTTAGTGAGATATG-ATCTATTATTTGAATTCGTTCCACTGTA
66 ATGCGATCTACTCTACTGCAACTTCAGAGAGAT-TGAATCTATTATTTGAATCCGCTCCACTGCA
* * *
6127229 ACTTCTA-GGAGACGAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAAGGAGATAAGATTT
130 ACTT-TAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTT
*
6127293 GCCATCTTCGATCTGCTCCACTACTG
194 GCCATTTTCGATCTGCTCCACTACTG
* * *
6127319 C-T-TAGGGAGATAAGA-TCTGC-TTCTTCGGTCTGCTTCGCTGCAACCTCAGGGAGATAAGACG
1 CTTCTAGGGAGATAAGACT-TGCTTTC-TCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACC
* ** * * * *
6127380 TGATGCGATCTACTTTACTATAACTTCAGAGAGA-TAAGATCTGTTATTTGAATCCGCTCCTCTA
64 TGATGCGATCTACTCTACTGCAACTTCAGAGAGATTGA-ATCTATTATTTGAATCCGCTCCACTG
* * * *** *
6127444 CAACTTCAGAGAGATGAGATTACTCTTTTTAAACTACTCCACTGCAAACTCAGGGAGATAAGATT
128 CAACTTTAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATT
*
6127509 TGCCATATTCGATCTGCTCCACTACTG
193 TGCCATTTTCGATCTGCTCCACTACTG
* *
6127536 C-T-TAGGGAGATAAGA-TATGC-TTCTTCGGTCTGCTTCGCTGCAACCTCAGGGAGATAAG-CC
1 CTTCTAGGGAGATAAGACT-TGCTTTC-TCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACC
* * * * * * *
6127596 GTGATACGATCTACTCTATTACAACTTCAGAGAGA-TAAGATCTGTTATTTGAATCCGCTCTATT
64 -TGATGCGATCTACTCTACTGCAACTTCAGAGAGATTGA-ATCTATTATTTGAATCCGCTCCACT
* * * *
6127660 ACAACTTTAGGAAGATGGGATTACTGGTTTTAATCTACTCCACTGCAAACTTAGGGAGATAAGAT
127 GCAACTTTAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGAT
*** * * * **
6127725 TCATCATATTTAG-TCGGC-CCACTTCAA
192 TTGCCAT-TTTCGATCTGCTCCACTACTG
* * * * *
6127752 CTTC-AAGGAGATGAGGCATGCTTTCTCTGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTG
1 CTTCTAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTG
* * * * * *
6127816 AAGCGATGTACTCTACTACAACTTCAGAGAGATAGGATCTATTATTTGAATCCACTCCACTGCAA
66 ATGCGATCTACTCTACTGCAACTTCAGAGAGATTGAATCTATTATTTGAATCCGCTCCACTGCAA
* *
6127881 CTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGC
131 CTTTAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGC
* * *
6127946 CATATCCGATTTGCTCCACTACTG
196 CATTTTCGATCTGCTCCACTACTG
* * * * *
6127970 CTTCAAGGG-GTTAAGACTTGCTTTCTCATTCTGCTCCGCTGTAACCTTAGGGAGATAAGACCTG
1 CTTCTAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTG
* *
6128034 ATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAA
66 ATGCGATCTACTCTACTGCAACTTCAGAGAGATTGAATCTATTATTTGAATCCGCTCCACTGCAA
* * * * * *
6128099 CTTCAGGGAGATGTGATTACTCGTTTTAATCCACTCTACTGCAAACTCAGGGAGATAAGATTTGC
131 CTTTAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGC
* *
6128164 CATCTTCGATCTGCTCTACTACTG
196 CATTTTCGATCTGCTCCACTACTG
* * * * *
6128188 -TT-TAGGGAGATAACA-TCTGCTTTTTCAGTCTGCTCTGCTGTAACCTCAGGGAGATAAGACGT
1 CTTCTAGGGAGATAAGACT-TGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCT
* ** * ** *
6128250 GATGTGATCTACTCTACTGCAACTTCAGAGAGATAAAATCTGTTATTTGAATCTTCTCCATTGCA
65 GATGCGATCTACTCTACTGCAACTTCAGAGAGATTGAATCTATTATTTGAATCCGCTCCACTGCA
* * * * * *
6128315 ACTTTAGAGAGATAGGATTACTGGCTTTAATTTACCCCACTGCAAACTTAGAGAGATAAGAT
130 ACTTTAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGAT
6128377 CTGCTTCTTC
Statistics
Matches: 1295, Mismatches: 177, Indels: 45
0.85 0.12 0.03
Matches are distributed among these distances:
215 1 0.00
216 24 0.02
217 666 0.51
218 594 0.46
219 10 0.01
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (219 bp):
CTTCTAGGGAGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTG
ATGCGATCTACTCTACTGCAACTTCAGAGAGATTGAATCTATTATTTGAATCCGCTCCACTGCAA
CTTTAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGC
CATTTTCGATCTGCTCCACTACTG
Found at i:6126996 original size:524 final size:524
Alignment explanation
Indices: 6126092--6127158 Score: 1525
Period size: 524 Copynumber: 2.0 Consensus size: 524
6126082 TTTACCCCAT
* * *
6126092 TGTAAACTCAGGGAGATAATATTCACCATCTTCAGTCTGCCCTACTTCAACTTCAAGGGGATAAG
1 TGTAAACTTAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAAGGGGATAAG
*
6126157 ACTTTCTTTCTCAGTCTACTCCGCTGCAACATCAGGGAGATAAGACCTGATGCGATCTACTCTAC
66 ACTTGCTTTCTCAGTCTACTCCGCTGCAACATCAGGGAGATAAGACCTGATGCGATCTACTCTAC
* *
6126222 TGCAACTTCAGAGAGATAAGATCGGTTATTTGAATCGCTCCATTGCAACTTCAGGGAGATGGGAT
131 TGCAACTTCAGAGAGATAAGATCGATTATTTGAATCGCTCCACTGCAACTTCAGGGAGATGGGAT
** **
6126287 TACTGGCTTTAATCTACACCACTACAAACTCGGGGAGATAAGATTTAGCATCTTCGATCTGTTCC
196 TACTGGCTTTAATCTACACCACTACAAACTCAAGGAGATAAGATTTAGCATCTTCGATCTACTCC
* *
6126352 ACTACTGCTTCAAAGGGATAAGACTTGCTTTTCCAATCTGCTCCGCAGTAACCTTAGGGAGATAA
261 ACTACTGCTTCAAAGGGATAAGACTTGCTTTTCCAATCTGCTCCGCAGCAACCTCAGGGAGATAA
* **
6126417 GACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATAATTTGAATTTGCTCCA
326 GACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGAATCTATAATTTGAATCCGCTCCA
* *
6126482 CTGCAACTTCAGAGAGACGGGCTCACGGGCTTTAATCTACTCCATTGCAAACTCAGGGAGATAAG
391 CTGCAACTTCAGAGAGACGGGATCACGGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAG
*
6126547 ATTTGCCATCTTCGATCTGCTCCACTACTGCTT-AAGGATATAAGATC-TGC-TTCTTCAGTCTG
456 ATTTGCCATCTTCGATCTGCTCCACTACTGCTTCAAGGAGATAAG-TCTTGCTTTC-TCAGTCTG
6126609 CTCCGC
519 CTCCGC
* *
6126615 TGTAAACTTAGAGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAG
1 TGTAAACTTAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAAGGGGATAAG
* * *
6126680 ACTTGCTTTCTCAGTCTCCTCCGCTGCAACCTCAGGGAGATAAGACTTGATGCGATCTACTCTAC
66 ACTTGCTTTCTCAGTCTACTCCGCTGCAACATCAGGGAGATAAGACCTGATGCGATCTACTCTAC
* * * * *
6126745 TGCTACTTCAGAGAGAT-TGAATCTATTATTTGAATCCGCTCCACTGTAACTTTAGGGAGATGGG
131 TGCAACTTCAGAGAGATAAG-ATCGATTATTTGAAT-CGCTCCACTGCAACTTCAGGGAGATGGG
* * * *
6126809 ATTACTGGCTTTAGTCTACTCCACTGCAAACTCAAGGAGATAAGATTT-GCCATTTTCGATCTAC
194 ATTACTGGCTTTAATCTACACCACTACAAACTCAAGGAGATAAGATTTAG-CATCTTCGATCTAC
* * * * *
6126873 TCCACTACTGCTTCTACGGGATAAGACTTGC-TTTCTCAGTCTGCTCCGCTGCAGCCTCAGGGAG
258 TCCACTACTGCTTCAAAGGGATAAGACTTGCTTTTC-CAATCTGCTCCGCAGCAACCTCAGGGAG
* * * *
6126937 ATAAGACCTGATGCGATCTACTCTACTGCTACTTCAGAGAGATTGAATCTTTTATTTGAATCCGC
322 ATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGAATCTATAATTTGAATCCGC
* * * * * * * * *
6127002 TCTACTGCAACTTTAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAATTTAGGGTGA
387 TCCACTGCAACTTCAGAGAGACGGGATCACGGGCTTTAATCTACTCCACTGCAAACTCAGGGAGA
* * * *
6127067 TAAGATTTGCCATTTTCGATCTGCTCCACTATTGCTTCAAGGGGATAAGTCTTGCTTTCTCAGTT
452 TAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTCAAGGAGATAAGTCTTGCTTTCTCAGTC
6127132 TGCTCCGC
517 TGCTCCGC
** *
6127140 TACAACCTTAGGGAGATAA
1 TGTAAACTTAGGGAGATAA
6127159 AACCTGATGC
Statistics
Matches: 479, Mismatches: 58, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
522 1 0.00
523 155 0.32
524 280 0.58
525 40 0.08
526 3 0.01
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (524 bp):
TGTAAACTTAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAAGGGGATAAG
ACTTGCTTTCTCAGTCTACTCCGCTGCAACATCAGGGAGATAAGACCTGATGCGATCTACTCTAC
TGCAACTTCAGAGAGATAAGATCGATTATTTGAATCGCTCCACTGCAACTTCAGGGAGATGGGAT
TACTGGCTTTAATCTACACCACTACAAACTCAAGGAGATAAGATTTAGCATCTTCGATCTACTCC
ACTACTGCTTCAAAGGGATAAGACTTGCTTTTCCAATCTGCTCCGCAGCAACCTCAGGGAGATAA
GACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGAATCTATAATTTGAATCCGCTCCA
CTGCAACTTCAGAGAGACGGGATCACGGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAG
ATTTGCCATCTTCGATCTGCTCCACTACTGCTTCAAGGAGATAAGTCTTGCTTTCTCAGTCTGCT
CCGC
Found at i:6128407 original size:173 final size:173
Alignment explanation
Indices: 6128189--6128549 Score: 537
Period size: 173 Copynumber: 2.1 Consensus size: 173
6128179 CTACTACTGT
* * * *
6128189 TTAGGGAGATAACATCTGCTTTTTCAGTCTGCTCTGCTGTAACCTCAGGGAGATAAGACGTGATG
1 TTAGGGAGATAAGATCTGCTTCTTCAGTCTGCTCCGCTGTAACCTCAGAGAGATAAGACGTGATG
* * *
6128254 TGATCTACTCTACTGCAACTTCAGAGAGATAAAATCTGTTATTTGAATCTTCTCCAT-TGCAACT
66 CGATCTACTCTACTGCAACTTCAGAGAGATAAAATCTGTTATTTGAATCTGCTCC-TCTACAACT
* * *
6128318 TTAGAGAGAT-AGGATTACTGGCTTTAATTTACCCCACTGCAAAC
130 TCAGAGAGATGA-GATTACTAGCTTTAATCTACCCCACTGCAAAC
* *
6128362 TTAGAGAGATAAGATCTGCTTCTTCGGTCTGCTCCGCTGTAACCTCAGAGAGATAAGACGTGATG
1 TTAGGGAGATAAGATCTGCTTCTTCAGTCTGCTCCGCTGTAACCTCAGAGAGATAAGACGTGATG
**
6128427 CGATCTACTCTACTGCAACTTCAGAGAGATATGATCTGTTATTTGAATCTGCTCCTCTACAACTT
66 CGATCTACTCTACTGCAACTTCAGAGAGATAAAATCTGTTATTTGAATCTGCTCCTCTACAACTT
* * *
6128492 CAGGGAGATGAGATTACTAGCTTTAATCTACTCCATTGCAAAC
131 CAGAGAGATGAGATTACTAGCTTTAATCTACCCCACTGCAAAC
6128535 TTAGGGAGATAAGAT
1 TTAGGGAGATAAGAT
6128550 TCACCATATT
Statistics
Matches: 168, Mismatches: 18, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
172 1 0.01
173 166 0.99
174 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (173 bp):
TTAGGGAGATAAGATCTGCTTCTTCAGTCTGCTCCGCTGTAACCTCAGAGAGATAAGACGTGATG
CGATCTACTCTACTGCAACTTCAGAGAGATAAAATCTGTTATTTGAATCTGCTCCTCTACAACTT
CAGAGAGATGAGATTACTAGCTTTAATCTACCCCACTGCAAAC
Found at i:6128417 original size:869 final size:869
Alignment explanation
Indices: 6126618--6128420 Score: 2399
Period size: 869 Copynumber: 2.1 Consensus size: 869
6126608 GCTCCGCTGT
** * * * *
6126618 AAACTTAGAGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCAGGGGGATAAGACT
1 AAACTTAGAGAGATAAGA-TCTGCATCTTCGGTCTGCTCCACTT-AACCTCAGGGAGATAAGACT
* * *
6126683 TGCTTTCTCAGTCTCCTCCGCTGCAACCTCAGGGAGATAAGACTTGATGCGATCTACTCTACTGC
64 TGCTTTCTCAGTCTCCTCCGCTGCAACCTCAGGGAGATAAGACGTGATACGATCTACTCTACTAC
* * ** *
6126748 TACTTCAGAGAGATTGAATCTATTATTTGAATCCGCTCCACTGTAACTTTAGGGAGATGGGATTA
129 AACTTCAGAGAGATAGAATCTATTATTTGAATCCGCTCCACTACAACTTTAGGAAGATGGGATTA
* ** * *
6126813 CTGGCTTTAGTCTACTCCACTGCAAACTCAAGGAGATAAGATTTGCCATTTTCGATCTACTCCAC
194 CTGGCTTTAATCTACTCCACTGCAAACTCAAGGAGATAAGATTCACCATTTTAGATCGACTCCAC
** * * *
6126878 TACTGCTTCTACGGGATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAGCCTCAGGGAGATAAGA
259 TACAACTTCTAAGGGATAAGACATGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGA
* * * * * * *
6126943 CCTGATGCGATCTACTCTACTGCTACTTCAGAGAGATTGAATCTTTTATTTGAATCCGCTCTACT
324 CCTGAAGCGATCTACTCTACTACAACTTCAGAGAGATAGAATCTATTATTTGAATCCACTCCACT
* * * * *
6127008 GCAACTTTAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAATTTAGGGTGATAAGAT
389 GCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGAT
* * * *
6127073 TTGCCATTTTCGATCTGCTCCACTATTGCTTCAAGGGGATAAGTCTTGCTTTCTCAGTTTGCTCC
454 TTGCCATATCCGATCTGCTCCACTACTGCTTCAAGGGGATAAGACTTGCTTTCTCAGTTTGCTCC
* * * *
6127138 GCTACAACCTTAGGGAGATAAAACCTGATGCGATCTACTCTACTGTAACTTTAGTGAGATATGAT
519 GCTACAACCTTAGGGAGATAAAACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGAT
* * * * *
6127203 CTATTATTTGAATTCGTTCCACTGTAACTTCTAGGAGACGAGATTACTGGCTTTAATCTACTCCA
584 CTATTATTTGAATCCGCTCCACTGCAACTTCTAGGAGACGAGATTACTCGCTTTAATCCACTCCA
*
6127268 CTGCAAACTCAAGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
649 CTGCAAACTCAAGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAC
* *
6127333 ATCTGCTTCTTCGGTCTGCTTCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTTTAC
714 ATCTGCTTCTTCAGTCTGCTTCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTAC
* *
6127398 TATAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCTCTACAACTTCAGAGAGATGAGA
779 TACAACTTCAGAGAGATAAAATCTGTTATTTGAATCCGCTCCTCTACAACTTCAGAGAGATGAGA
** *
6127463 TTACTCTTTTTAAACTACTCCACTGC
844 TTACTCGCTTTAAACTACCCCACTGC
* * * * * *
6127489 AAACTCAGGGAGATAAGATTTGCCATATTCGATCTGCTCCAC-T-ACTGCTTAGGGAGATAAGA-
1 AAACTTAGAGAGATAAGATCTG-CATCTTCGGTCTGCTCCACTTAAC--CTCAGGGAGATAAGAC
* * * * *
6127551 TATGC-TTCTTCGGTCTGCTTCGCTGCAACCTCAGGGAGATAAGCCGTGATACGATCTACTCTAT
63 T-TGCTTTC-TCAGTCTCCTCCGCTGCAACCTCAGGGAGATAAGACGTGATACGATCTACTCTAC
* * *
6127615 TACAACTTCAGAGAGATA-AGATCTGTTATTTGAATCCGCTCTATTACAACTTTAGGAAGATGGG
126 TACAACTTCAGAGAGATAGA-ATCTATTATTTGAATCCGCTCCACTACAACTTTAGGAAGATGGG
* * * * *
6127679 ATTACTGGTTTTAATCTACTCCACTGCAAACTTAGGGAGATAAGATTCATCATATTTAG-TCGGC
190 ATTACTGGCTTTAATCTACTCCACTGCAAACTCAAGGAGATAAGATTCACCAT-TTTAGATCGAC
* * * *
6127743 -CCACTTCAACTTC-AAGGAGATGAGGCATGCTTTCTCTGTCTGCTCCGCTGCAACCTCAGGGAG
254 TCCACTACAACTTCTAAGG-GATAAGACATGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAG
* *
6127806 ATAAGACCTGAAGCGATGTACTCTACTACAACTTCAGAGAGATAGGATCTATTATTTGAATCCAC
318 ATAAGACCTGAAGCGATCTACTCTACTACAACTTCAGAGAGATAGAATCTATTATTTGAATCCAC
6127871 TCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGA
383 TCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGA
* *
6127936 TAAGATTTGCCATATCCGATTTGCTCCACTACTGCTTCAAGGGGTTAAGACTTGCTTTCTCA-TT
448 TAAGATTTGCCATATCCGATCTGCTCCACTACTGCTTCAAGGGGATAAGACTTGCTTTCTCAGTT
** *
6128000 CTGCTCCGCTGTAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAG
513 -TGCTCCGCTACAACCTTAGGGAGATAAAACCTGATGCGATCTACTCTACTGCAACTTCAGAGAG
* * *
6128065 ATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTC-AGGGAGATGTGATTACTCGTTTTAAT
577 ATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCTA-GGAGACGAGATTACTCGCTTTAAT
* * * *
6128129 CCACTCTACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCTACTACTGTTTAGG
641 CCACTCCACTGCAAACTCAAGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGG
* * *
6128194 GAGATAACATCTGCTTTTTCAGTCTGC-TCTGCTGTAACCTCAGGGAGATAAGACGTGATGTGAT
706 GAGATAACATCTGCTTCTTCAGTCTGCTTC-GCTGCAACCTCAGGGAGATAAGACGTGATGCGAT
* ** * *
6128258 CTACTCTACTGCAACTTCAGAGAGATAAAATCTGTTATTTGAATCTTCTCCAT-TGCAACTTTAG
770 CTACTCTACTACAACTTCAGAGAGATAAAATCTGTTATTTGAATCCGCTCC-TCTACAACTTCAG
* **
6128322 AGAGAT-AGGATTACTGGCTTTAATTTACCCCACTGC
834 AGAGATGA-GATTACTCGCTTTAAACTACCCCACTGC
* * *
6128358 AAACTTAGAGAGATAAGATCTGCTTCTTCGGTCTGCTCCGCTGTAACCTCAGAGAGATAAGAC
1 AAACTTAGAGAGATAAGATCTGCATCTTCGGTCTGCTCCACT-TAACCTCAGGGAGATAAGAC
6128421 GTGATGCGAT
Statistics
Matches: 801, Mismatches: 114, Indels: 35
0.84 0.12 0.04
Matches are distributed among these distances:
868 26 0.03
869 569 0.71
870 169 0.21
871 37 0.05
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (869 bp):
AAACTTAGAGAGATAAGATCTGCATCTTCGGTCTGCTCCACTTAACCTCAGGGAGATAAGACTTG
CTTTCTCAGTCTCCTCCGCTGCAACCTCAGGGAGATAAGACGTGATACGATCTACTCTACTACAA
CTTCAGAGAGATAGAATCTATTATTTGAATCCGCTCCACTACAACTTTAGGAAGATGGGATTACT
GGCTTTAATCTACTCCACTGCAAACTCAAGGAGATAAGATTCACCATTTTAGATCGACTCCACTA
CAACTTCTAAGGGATAAGACATGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACC
TGAAGCGATCTACTCTACTACAACTTCAGAGAGATAGAATCTATTATTTGAATCCACTCCACTGC
AACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTT
GCCATATCCGATCTGCTCCACTACTGCTTCAAGGGGATAAGACTTGCTTTCTCAGTTTGCTCCGC
TACAACCTTAGGGAGATAAAACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCT
ATTATTTGAATCCGCTCCACTGCAACTTCTAGGAGACGAGATTACTCGCTTTAATCCACTCCACT
GCAAACTCAAGGAGATAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAACAT
CTGCTTCTTCAGTCTGCTTCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTA
CAACTTCAGAGAGATAAAATCTGTTATTTGAATCCGCTCCTCTACAACTTCAGAGAGATGAGATT
ACTCGCTTTAAACTACCCCACTGC
Found at i:6128500 original size:85 final size:85
Alignment explanation
Indices: 6128194--6128500 Score: 250
Period size: 85 Copynumber: 3.6 Consensus size: 85
6128184 ACTGTTTAGG
* * * * * * *
6128194 GAGATAACATCTGCTT-TTTCAGTCTGCT-CTGCTGTAACCTCAGGGAGATAAGACGTGATGTGA
1 GAGATAAGATCTG-TTATTTGAATCTGCTCCT-CTGCAACTTCAGAGAGATAAGACGTGATGCGA
6128257 TCTACTCTACTGCAACTTCAGA
64 TCTACTCTACTGCAACTTCAGA
* * * * *
6128279 GAGATAAAATCTGTTATTTGAATCTTCTCCAT-TGCAACTTTAGAGAGATAGGA--TTACTGGCT
1 GAGATAAGATCTGTTATTTGAATCTGCTCC-TCTGCAACTTCAGAGAGATAAGACGTGA-T-GC-
* * * *
6128341 TTAATTTACCCCACTGCAAACTT-AGA
62 --GATCTACTCTACTGC-AACTTCAGA
* * * * * *
6128367 GAGATAAGATCTGCTTCTTCG-GTCTGCTCCGCTGTAACCTCAGAGAGATAAGACGTGATGCGAT
1 GAGATAAGATCTG-TTATTTGAATCTGCTCCTCTGCAACTTCAGAGAGATAAGACGTGATGCGAT
6128431 CTACTCTACTGCAACTTCAGA
65 CTACTCTACTGCAACTTCAGA
* * *
6128452 GAGATATGATCTGTTATTTGAATCTGCTCCTCTACAACTTCAGGGAGAT
1 GAGATAAGATCTGTTATTTGAATCTGCTCCTCTGCAACTTCAGAGAGAT
6128501 GAGATTACTA
Statistics
Matches: 168, Mismatches: 39, Indels: 30
0.71 0.16 0.13
Matches are distributed among these distances:
83 2 0.01
84 13 0.08
85 86 0.51
86 1 0.01
87 1 0.01
88 52 0.31
89 11 0.07
90 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (85 bp):
GAGATAAGATCTGTTATTTGAATCTGCTCCTCTGCAACTTCAGAGAGATAAGACGTGATGCGATC
TACTCTACTGCAACTTCAGA
Found at i:6128598 original size:608 final size:608
Alignment explanation
Indices: 6127780--6128984 Score: 1682
Period size: 608 Copynumber: 2.0 Consensus size: 608
6127770 TGCTTTCTCT
* *
6127780 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGAAGCGATGTACTCTACTACAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGAGAGATAAGACCTGAAGCGATCTACTCTACTACAACTTCAGAG
* *
6127845 AGATAGGATCTATTATTTGAATCCACTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
66 AGATAGGATCTATTATTTGAATCCACTCCACTACAACTTCAGGGAGATGAGATTACTAGCTTTAA
** * * * **
6127910 TCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATCCGATTTGCTCCACTACTGCTTCA
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATATCCAATCTGCCCCACTACAACTTCA
* *
6127975 AGGGGTTAAGACTTGCTTTCTCA-TTCTGCTCCGCTGTAACCTTAGGGAGATAAGACCTGATGCG
196 AGGGGTTAAGACTTGCTTTCTCAGTT-TGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATACG
* ** * * *
6128039 ATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCA
260 ATCTACTCCACCACAACTTCAGAGAGATAAGATCTATTATTCGAATCCGCTCCACTACAACTTCA
* * * **
6128104 GGGAGATGTGATTACTCGTTTTAATCCACTCTACTGCAAACTCAGGGAGATAAGATTTGCCATCT
325 GGGAGATGGGATTACTCGTTTTAATCCACTCCACTGAAAACTCAGGGAGATAAGATTCACCATCT
* ** * *
6128169 TCGA-TCTGCTCTACTAC-TGTTTAGGGAGATAACA-TCTGCTTTTTCAGTCTGCTCTGCTGTAA
390 T-GAGTCTGC-CCACTACAACTTCAGGGAGATAACACT-TGCTTTCTCAGTCTGCTCTGCTGTAA
* * * *
6128231 CCTCAGGGAGATAAGACGTGATGTGATCTACTCTACTGCAACTTCAGAGAGATAAAATCTGTTAT
452 CCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTACAACTTCAGAGAGATAAAATCTATTAT
** * *
6128296 TTGAATCTTCTCCATTGCAACTTTAGAGAGAT-AGGATTACTGGCTTTAATTTACCCCACTGCAA
517 TTGAATCCGCTCCACTGCAACTTTAGAGAGATGA-GATTACTGGCTTTAATGTACCCCACTGCAA
*
6128360 ACTTAGAGAGATAAGATCTGCTTCTTCG
581 ACTCAGAGAGATAAGATCTGCTTCTTCG
* * * *
6128388 GTCTGCTCCGCTGTAACCTCAGAGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGAGAGATAAGACCTGAAGCGATCTACTCTACTACAACTTCAGAG
* * ** *
6128453 AGATATGATCTGTTATTTGAATCTGCTCCTCTACAACTTCAGGGAGATGAGATTACTAGCTTTAA
66 AGATAGGATCTATTATTTGAATCCACTCCACTACAACTTCAGGGAGATGAGATTACTAGCTTTAA
* * * * *
6128518 TCTACTCCATTGCAAACTTAGGGAGATAAGATTCACCATATTCAATCTGCCCCATTTCAACTTCA
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATATCCAATCTGCCCCACTACAACTTCA
* * * * *
6128583 GGGGGTTAAGACTTGCTTTTTCAGTTTGCTTCGCTGCAACCTTAGGGATATAAGACTTGATACGA
196 AGGGGTTAAGACTTGCTTTCTCAGTTTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATACGA
* *
6128648 TCTACTCCACCACAACTTCAGAGAGATAAGATCTGTTATTCGAATCCGCTCCATTACAACTTCAG
261 TCTACTCCACCACAACTTCAGAGAGATAAGATCTATTATTCGAATCCGCTCCACTACAACTTCAG
* *
6128713 GGAGATGGGATTACTGGTTTTAATCTACTCCACTGAAAACTCAGGGAGATAAGATTCACCATCTT
326 GGAGATGGGATTACTCGTTTTAATCCACTCCACTGAAAACTCAGGGAGATAAGATTCACCATCTT
* * * *
6128778 TAGTCTGCCCACTTCAACTTCAGGGAGATAAGACTTGCTTTCTCTGTCTGCTCTGCTGTAACCTC
391 GAGTCTGCCCACTACAACTTCAGGGAGATAACACTTGCTTTCTCAGTCTGCTCTGCTGTAACCTC
* * **
6128843 AGGGAGATAAGACCTGATGCGATGTAGTCTACTACAACTTCAGAGAGATAGGATCTATTATTTGA
456 AGGGAGATAAGACCTGATGCGATCTACTCTACTACAACTTCAGAGAGATAAAATCTATTATTTGA
* *
6128908 ATCCGCTCCACTGCAACTTTAGGGAGATGAGATTACTGGCTTTAATGTACTCCACTGCAAACTCA
521 ATCCGCTCCACTGCAACTTTAGAGAGATGAGATTACTGGCTTTAATGTACCCCACTGCAAACTCA
*
6128973 GGGAGATAAGAT
586 GAGAGATAAGAT
6128985 TTGGCATATT
Statistics
Matches: 520, Mismatches: 72, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
607 6 0.01
608 510 0.98
609 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (608 bp):
GTCTGCTCCGCTGCAACCTCAGAGAGATAAGACCTGAAGCGATCTACTCTACTACAACTTCAGAG
AGATAGGATCTATTATTTGAATCCACTCCACTACAACTTCAGGGAGATGAGATTACTAGCTTTAA
TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATATCCAATCTGCCCCACTACAACTTCA
AGGGGTTAAGACTTGCTTTCTCAGTTTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATACGA
TCTACTCCACCACAACTTCAGAGAGATAAGATCTATTATTCGAATCCGCTCCACTACAACTTCAG
GGAGATGGGATTACTCGTTTTAATCCACTCCACTGAAAACTCAGGGAGATAAGATTCACCATCTT
GAGTCTGCCCACTACAACTTCAGGGAGATAACACTTGCTTTCTCAGTCTGCTCTGCTGTAACCTC
AGGGAGATAAGACCTGATGCGATCTACTCTACTACAACTTCAGAGAGATAAAATCTATTATTTGA
ATCCGCTCCACTGCAACTTTAGAGAGATGAGATTACTGGCTTTAATGTACCCCACTGCAAACTCA
GAGAGATAAGATCTGCTTCTTCG
Found at i:6128639 original size:652 final size:649
Alignment explanation
Indices: 6126675--6128641 Score: 1961
Period size: 652 Copynumber: 3.0 Consensus size: 649
6126665 CTTCAGGGGG
* *
6126675 ATAAGACTTGCTTTCTCAGTCTCCTCCGCTGCAACCTCAGGGAGATAAGACTTGATGCGATCTAC
1 ATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTAC
* * * * * *
6126740 TCTACTGCTACTTCAGAGAGATTGAATCTATTATTTGAATCCGCTCCACTGTAACTTTAGGGAGA
66 TCTACTACAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGA
* * * * * *
6126805 TGGGATTACTGGCTTTAGTCTACTCCACTGCAAACTCAAGGAGATAAGATTTGCCATTTTCGATC
131 TGAGATTACTCGTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATC
* * * * *
6126870 TACTCCACTACTGCTTCTACGG-GATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAGCCTCAGG
196 TGCTCCACTACTGC-T-TAGGGAGATAAGAC-TGCTTTTTCAGTCTGCTCTGCTGCAACCTCAGG
* * ** *
6126934 GAGATAAGACCTGATGCGATCTACTCTACTGCTACTTCAGAGAGATTGAATCTTTTATTTGAATC
258 GAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAAATCTGTTATTTGAATC
* * *
6126999 CGCTCTACTGCAACTTTAGGGAGATGGGATTACTGGCTTTAATCTACTCCACTGCAAATTTAGGG
323 CGCTCCACTGCAACTTTAGGGAGATAGGATTACTGGCTTTAATCTACTCCACTGCAAACTTAGGG
* * * * ** * * * * * * *
6127064 TGATAAGATTTGCCATT-TTCGATCTGCTCCACTATTGCTTCAAGGGGATAAGTCTTGCTTTCTC
388 AGATAAGATCTG-C-TTCTTCGGTCTGCTCCACTGTAACCTCAAGGAGATAAGACGTGCATGCTG
* * * * * * ** *
6127128 AGTTTGCTCCGCTACAACCTT-AGGGAGATAAAACCTGATGCGATCTACTCTACTGTAACTTTAG
451 A-TCTACTCCACTGCAA-CTTCAGAGAGATAAGACCTGATGCGATCTACTCTACTACAACTTCAG
* * * * ** *
6127192 TGAGATATGATCTATTATTTGAAT-T-CGTTCCACTG-TAACTTCTA-GGAGACGAGATTACTGG
514 GGAGATAGGATCTACTATTTGAATCTAC--TCCACTGCAAAC-T-TAGGGAGATAAGATTACTAG
* * * * * * *
6127253 CTTTAATCTACTCCACTGCAAACTCAAGGAGATAAGATTTGCCATCTTC-GATCTGCTCCACTAC
575 CTTCAATCTACCCCACTGCAAACTCAGGGAGATAAGACTTG-CTTTTTCAGATTTGCTCCACTAC
** *
6127317 TGCTTAGGGAG
639 ACCTTAGGGAT
* * *
6127328 ATAAGA-TCTGC-TTCTTCGGTCTGCTTCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCT
1 ATAAGACT-TGCTTTC-TCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCT
* * * * * * *
6127391 ACTTTACTATAACTTCAGAGAGATAAGATCTGTTATTTGAATCCGCTCCTCTACAACTTCAGAGA
64 ACTCTACTACAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGA
* * *
6127456 GATGAGATTACTCTTTTTAAACTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATTCGA
129 GATGAGATTACTCGTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGA
* * *
6127521 TCTGCTCCACTACTGCTTAGGGAGATAAGATATGCTTCTTCGGTCTGCT-TCGCTGCAACCTCAG
194 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTGCTTTTTCAGTCTGCTCT-GCTGCAACCTCAG
* * * * *
6127585 GGAGATAAGCCGTGATACGATCTACTCTATTACAACTTCAGAGAGATAAGATCTGTTATTTGAAT
257 GGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAAATCTGTTATTTGAAT
* * * * * *
6127650 CCGCTCTATTACAACTTTAGGAAGATGGGATTACTGGTTTTAATCTACTCCACTGCAAACTTAGG
322 CCGCTCCACTGCAACTTTAGGGAGATAGGATTACTGGCTTTAATCTACTCCACTGCAAACTTAGG
* * ** * * * * * *
6127715 GAGATAAGATTCAT-CATATTTAGTCGGC-CCACT-TCAACTTCAAGGAGATGAGGCATGCTTTC
387 GAGATAAGA-TC-TGCTTCTTCGGTCTGCTCCACTGT-AACCTCAAGGAGATAAGACGTGC-AT-
* * * * * * *
6127777 TCTG-TCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGAAGCGATGTACTCTACTACAACTTC
447 GCTGATCTACTCCACTGCAACTTCAGAGAGATAAGACCTGATGCGATCTACTCTACTACAACTTC
* * * * *
6127841 AGAGAGATAGGATCTATTATTTGAATCCACTCCACTGC-AACTTCAGGGAGATGAGATTACTGGC
512 AGGGAGATAGGATCTACTATTTGAATCTACTCCACTGCAAACTT-AGGGAGATAAGATTACTAGC
* * * ** * * **
6127905 TTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATCCGATTTGCTCCACTACTG
576 TTCAATCTACCCCACTGCAAACTCAGGGAGATAAGACTTGCTTTTTCAGATTTGCTCCACTACAC
*
6127970 CTTCAAGGGGT
641 CTT--AGGGAT
* * *
6127981 -TAAGACTTGCTTTCTCATTCTGCTCCGCTGTAACCTTAGGGAGATAAGACCTGATGCGATCTAC
1 ATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTAC
*
6128045 TCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGA
66 TCTACTACAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGA
* * *
6128110 TGTGATTACTCGTTTTAATCCACTCTACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATC
131 TGAGATTACTCGTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATC
* * * *
6128175 TGCTCTACTACTGTTTAGGGAGATAACATCTGCTTTTTCAGTCTGCTCTGCTGTAACCTCAGGGA
196 TGCTCCACTACTGCTTAGGGAGATAAGA-CTGCTTTTTCAGTCTGCTCTGCTGCAACCTCAGGGA
* **
6128240 GATAAGACGTGATGTGATCTACTCTACTGCAACTTCAGAGAGATAAAATCTGTTATTTGAATCTT
260 GATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAAATCTGTTATTTGAATCCG
* * * * *
6128305 CTCCATTGCAACTTTAGAGAGATAGGATTACTGGCTTTAATTTACCCCACTGCAAACTTAGAGAG
325 CTCCACTGCAACTTTAGGGAGATAGGATTACTGGCTTTAATCTACTCCACTGCAAACTTAGGGAG
*
6128370 ATAAGATCTGCTTCTTCGGTCTGCTCCGCTGTAACCTC-AGAGAGATAAGACGTG-ATGC-GATC
390 ATAAGATCTGCTTCTTCGGTCTGCTCCACTGTAACCTCAAG-GAGATAAGACGTGCATGCTGATC
* * * ** *
6128432 TACTCTACTGCAACTTCAGAGAGATATGATCTGTTATTTGAATCTGCTCCT-CTACAACTTCAGG
454 TACTCCACTGCAACTTCAGAGAGATAAGACCTG--ATGCG-ATCTACT-CTACTACAACTTCAGG
* * **
6128496 GAGAT-GAGAT-TACTAGCTTT-AATCTACTCCATTGCAAACTTAGGGAGATAAGATTCACCATA
515 GAGATAG-GATCTACTA--TTTGAATCTACTCCACTGCAAACTTAGGGAGATAAGATT-ACTAGC
* * * * * * * *
6128558 TTCAATCTGCCCCATTTC-AACTTCAGGGGGTTAAGACTTGCTTTTTCAG-TTTGCTTCGCTGCA
576 TTCAATCTACCCCACTGCAAAC-TCAGGGAGATAAGACTTGCTTTTTCAGATTTGCTCCACTAC-
6128621 ACCTTAGGGAT
639 ACCTTAGGGAT
6128632 ATAAGACTTG
1 ATAAGACTTG
6128642 ATACGATCTA
Statistics
Matches: 1096, Mismatches: 178, Indels: 81
0.81 0.13 0.06
Matches are distributed among these distances:
648 1 0.00
649 30 0.03
650 10 0.01
651 209 0.19
652 605 0.55
653 240 0.22
654 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (649 bp):
ATAAGACTTGCTTTCTCAGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTAC
TCTACTACAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGA
TGAGATTACTCGTTTTAATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATC
TGCTCCACTACTGCTTAGGGAGATAAGACTGCTTTTTCAGTCTGCTCTGCTGCAACCTCAGGGAG
ATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAAATCTGTTATTTGAATCCGC
TCCACTGCAACTTTAGGGAGATAGGATTACTGGCTTTAATCTACTCCACTGCAAACTTAGGGAGA
TAAGATCTGCTTCTTCGGTCTGCTCCACTGTAACCTCAAGGAGATAAGACGTGCATGCTGATCTA
CTCCACTGCAACTTCAGAGAGATAAGACCTGATGCGATCTACTCTACTACAACTTCAGGGAGATA
GGATCTACTATTTGAATCTACTCCACTGCAAACTTAGGGAGATAAGATTACTAGCTTCAATCTAC
CCCACTGCAAACTCAGGGAGATAAGACTTGCTTTTTCAGATTTGCTCCACTACACCTTAGGGAT
Found at i:6128687 original size:218 final size:218
Alignment explanation
Indices: 6128388--6137348 Score: 10914
Period size: 218 Copynumber: 41.2 Consensus size: 218
6128378 TGCTTCTTCG
* * *
6128388 GTCTGCTCCGCTGTAACCTCAGAGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * * * * *
6128453 AGATATGATCTGTTATTTGAATCTGCTCCTCTACAACTTCAGGGAGATGAGATTACTAGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
* * * * *
6128518 TCTACTCCATTGCAAACTTAGGGAGATAAGATTCACCATATTCAATCTGCCCCATTTCAACTTCA
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCA
* *
6128583 GGGGGTTAAGACTTGCTTTTTCA
196 GGGGGATAAGACTTGCTTTCTCA
* * * * * * * **
6128606 GTTTGCTTCGCTGCAACCTTAGGGATATAAGACTTGATACGATCTACTCCACCACAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * * * * *
6128671 AGATAAGATCTGTTATTCGAATCCGCTCCATTACAACTTCAGGGAGATGGGATTACTGGTTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
* *
6128736 TCTACTCCACTGAAAACTCAGGGAGATAAGATTCACCATCTTTAGTCTG-CCCACTTCAACTTCA
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCA
* *
6128800 GGGAGATAAGACTTGCTTTCTCT
196 GGGGGATAAGACTTGCTTTCTCA
* * * * *
6128823 GTCTGCTCTGCTGTAACCTCAGGGAGATAAGACCTGATGCGATGTAGTCTACTACAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* *
6128888 AGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTTAGGGAGATGAGATTACTGGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
* *** * * * **
6128953 TGTACTCCACTGCAAACTCAGGGAGATAAGATTTGGCATATTC-GATCTGCTCCACTACTGCTT-
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTGCCCCACTTCAACTTC
* * *
6129016 AGGGAGATAAGA-TCTAC-TTCTTCG
195 AGGGGGATAAGACT-TGCTTTC-TCA
* * *
6129040 GCCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTGTACTGCAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * * * * *
6129105 AGATAAGATATGTTATTTGAATCCGCTCCAGTACAACTTCAGGGAGATTA-ATTACTAGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
* *
6129169 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACAATCTTCAGTCTACCCCACTTCAACTTCA
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCA
* *
6129234 GTGGGATAAGACTTGCTTTCTTA
196 GGGGGATAAGACTTGCTTTCTCA
* * * * *
6129257 GTCTTCTCTGCTGCAACCTTAGGGATATAAGACTTGATGCGATCTACTCTACTGCAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * *
6129322 AGATAAGATCTGTTATTTGAATCCGCTCCATTGCAACTTCAGGGAGATGGGATTACTGGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
* *
6129387 TCTACTCCACTACCAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCA
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCA
*
6129452 AGGGGATAAGACTTGCTTTCTCA
196 GGGGGATAAGACTTGCTTTCTCA
* * * * *
6129475 GTCTGCTCTGCTGCAACCTCAGGGAGATAAGGCTTGATGCGATCTACTCTACTGCTACTTCATAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
** * *
6129540 AGATTGGATCTATTATTTGAATCCGCTCCACTACAACTTAAGGGAGATGAGATTACTGGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
* * * ** * * * **
6129605 TCTACTCCACTGTAAACTTAGGGTGATAAGATTTGCCATTTTC-GATCTGCTCCACTACTGCTTC
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTGCCCCACTTCAACTTC
* *
6129669 AAGGGGATAAGACTTGCTTTCTTA
195 AGGGGGATAAGACTTGCTTTCTCA
* * *
6129693 GTCTGCTCCGCTACAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGCG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * ** * * * * *
6129758 AGATAGGATTTATTATTTGAATTTGTTCCACTGTAACTTCAGGGAGACGGGATTACTCGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
* ** * * **
6129823 TCTACTCCACTGCAAACTCAAGGAGATAAGATTTGCCATCTTC-GATCTGCTCCACTACTGCTT-
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTGCCCCACTTCAACTTC
*
6129886 AGGGGGATAAGA-TCTGC-TTCTTCG
195 AGGGGGATAAGACT-TGCTTTC-TCA
* * *
6129910 GTCTGCTCCGCTGCAACCTCAGGGAAATAAGACGTGATGCGATCCACTCTACTGCAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * *
6129975 AGATAAGATCTGTTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATG-GAATTACTCGTTTTA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAG-ATTACTGGCTTTA
* * * ** * * **
6130039 AACTACTCCACTGCAAACTCAGGAAGATAAGTTTTGCCATCTTC-GATCTGCTCCACTACTGCTT
130 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTGCCCCACTTCAACTT
** *
6130103 -AGGTAGATAAGA-TCTGC-TTCTTCG
194 CAGGGGGATAAGACT-TGCTTTC-TCA
* *
6130127 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATACGATCTACTCTACTGGCAACTTCAGA
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACT-GCAACTTCAGA
* * * * *
6130192 GAGATAAGATCTGTTATTTGAATCTGCTCCTCTACAACTTCAGGGAGATGAGATTACTAGCTTTA
65 GAGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTA
* * * * *
6130257 ATCTACTCCATTGCAAACTTAGGGAGATAAGATTCACCATATTCAATCTGCCCCATTTCAACTTC
130 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTC
* *
6130322 AGGGGGTTAAGACTTGCTTTTTCA
195 AGGGGGATAAGACTTGCTTTCTCA
* * * * * * * *
6130346 GTTTGCTTCGCTGCAACCTTAGGGATATAAGACTTGATACGATCTACTCCACCGCAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * * * * *
6130411 AGATAAGATCTGTTATTCGAATCCGCTCCATTACAACTTCAGGGAGATGGGATTACTGGTTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
* *
6130476 TCTACTCCACTGAAAACTCAGGGAGATAAGATTCACCATCTTTAGTCTGCCCCACTTCAACTTCA
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCA
* *
6130541 GGGGAGATAAGACTTGCTTTTTCG
196 GGGG-GATAAGACTTGCTTTCTCA
* *
6130565 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATACGATCTACTCTACTGCAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * * * *
6130630 AGATAAGATCTGTTATTTGAATCTGCTCCTCTACAACTTCAGGGAGATGAGATTACTAGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
* * * *
6130695 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCATC-TAATTCAGCCTGCCCCATTTCAACTTC
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCAT-CTTCAGTCTGCCCCACTTCAACTTC
6130759 AGGGGGATAAGACTTGCTTTCTCA
195 AGGGGGATAAGACTTGCTTTCTCA
* * * *
6130783 GTCTGCTCCGCTACAACCACAGGGAGATAAGACCTGATGCGATGTACTCTACTGTAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * * * * *
6130848 AGATATGATATATTATTTGAATCCGCTCCACTACAACTTCAGTGAGATGATATTACTTGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
** * * * * * **
6130913 TCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATATT-TGATTTGCTCCACTACTGCTTC
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTGCCCCACTTCAACTTC
*
6130977 AAGGGGATAAGACTTGCTTTCTCA
195 AGGGGGATAAGACTTGCTTTCTCA
* * * *
6131001 TTCTGTTCCGCTGTAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * *
6131066 AGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGTGATTACT--CATTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
* * *
6131129 TCTACTCCACTACAAACTCAGGGAGATAAGATTCACCATTTTTAGTCTG-CCCACTTCAACTTCA
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCA
*
6131193 GGGGGATAAGACTTGTTTTCTCA
196 GGGGGATAAGACTTGCTTTCTCA
* *
6131216 GTCTACTCCGCTGCAACCTCAGGGAGATAAGACCTGATACGATCTACTCTACTG-ACACTTCAGA
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCA-ACTTCAGA
* * * * * *
6131280 GAGATATGATCTATTA-TTGAATCCACTCCACTACAACTTTAGGGAGATGGGATTACTGGCTCTA
65 GAGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTA
* * *
6131344 ATCTACTCCACTGGAAACTCAGGGAGATAAGATTCACCATCTTCAGTATGCCCTACTTCAACTTC
130 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTC
* *
6131409 AGGGGGATAAGACTTCCTCTCTCA
195 AGGGGGATAAGACTTGCTTTCTCA
* * * * * *
6131433 GTCTGTTCCGCTGTAACCTTAGGAAGATAAGACATGATGCGATATACTCTACTGCAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* *** * * *
6131498 AGATAAGATCTGTTATTTGAATCTATTCCTCTACAACTTCAGGGAGATGAGATTACTAGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
* * *
6131563 TCTAATCCACTGCAAACTCAGGGAGATAAGATTCACTATCTTCAGTCTGCCCCAGTTCAACTTCA
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCA
* * *
6131628 AGGGGATAAAACTTACTTTCTCA
196 GGGGGATAAGACTTGCTTTCTCA
* * * * *
6131651 GTCTGCTCCGTTGCAACCTTAGGGAAATAAGGCCTGCTGCGATCTACTCTACTGCAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * * * * *
6131716 AGATAGGATCTATTATTTGAATCCACTCAACTGCAACTTTAGGGAGATGGGATTGCTGGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
** * *
6131781 TCTACTCCTTTGCAAACTCAGGGAGATAAGATTCACCATTTTCAGTCTGCCCCACTTCAACTTTT
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAAC-TTC
*
6131846 A-GGGGATAAGACTTGTTTTCTCA
195 AGGGGGATAAGACTTGCTTTCTCA
* * *
6131869 GTTTGCTGCGCTGCAACCTCAGGGAGATAAGACCTGATGTGATCTACTCTACTGCAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * *
6131934 AGATAGGATATATTATTTGAATCCGCTCCACTGCAACTTCAGCGAGATGAGATTACTGGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
* * ** * * * ** *
6131999 TCTACTCCACTCCAAACTCATGGAGATAAGATTTGCCATATTC-GATCTGCTCCACTACTGCTTA
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTGCCCCACTTCAACTTC
*
6132063 AAGGGGATAAGACTTGCTTTCTCA
195 AGGGGGATAAGACTTGCTTTCTCA
* * * * * *
6132087 TTCTGCTCTGCTGTAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTGAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * * * * ***
6132152 AGACAAGATCTGTTATTTGAATCTGCTCCTCTACAACTTCAGGGAGATGAGATTACTAAATTTTA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACT-GGCTTTA
* * *
6132217 ACCTACTCCACTGCAAACTCAAGGAGATAAGATTCACTATCTTCAGTCTGCCCCACTTCAACTTC
130 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTC
*
6132282 AAGGGGATAAGACTTGCTTTCTCA
195 AGGGGGATAAGACTTGCTTTCTCA
* * * * *
6132306 GTCTGCTCCGCTGCAACCTCAGGGAAATAAGACCTGCTACGATATACTCTACTGCAACTTCAGTG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * * * * *
6132371 AGATAAGATCTATTATTTGAATTCGCTCCACAGTAACTTTAGGGAGATGGGATTGCTGGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
** * **
6132436 TCTACTCCTTTGCAAACTCAGGGAGATAAGATTCACCATTTTCAGTCTGCCCCACTTCAACTTTT
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCA
6132501 GGGGGATAAGACTTGCTTTCTCA
196 GGGGGATAAGACTTGCTTTCTCA
* * *
6132524 GTTTGCTCCGCTGCAACCTCCGGGAGATAAGACCTGATGCGATTTACTCTACTGCAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * * * *
6132589 AGATAGGTTCTATTATTTGAATCCGCTCCACTACAACTTCA-GGAGATGGGATTATTGGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
* * ** * *
6132653 TCTACTCCACCGCAAACTCAAGGAGATAAGATTTGCCATCTTCAGTATG-CCCACTTCAACTTCT
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCA
* *
6132717 GGGGGATTAGACTTGCTTTTTCA
196 GGGGGATAAGACTTGCTTTCTCA
* *** * * * * * * * *
6132740 GTCTACTCTATTGTAACCTTAGGGATATAAGACTTGATGCGATCAACTCTACAGCAACTTTAAAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * * * * * *
6132805 AGATAAGATCTGTTATTCGAATTCGCTTCATTACAACTTCAGGGAGATGGGATTACTGGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
** * * *
6132870 TCTACTCCTTTGCAAACTAAGGGAGATAAGATTCACCATCTTCAGTATG-CTCACTTCAACTTCA
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCA
*
6132934 GGGGGATAAGACTTACTTTCTCA
196 GGGGGATAAGACTTGCTTTCTCA
* *
6132957 GTCTGCTCCGCTGCAACCTCAAGGATATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * * * * *
6133022 AGATAGGATCTATTATTTCAATTCACTCCACTGCAACTTCAGGGAGACGGGATTACTGGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
** * *
6133087 TCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCAGTATG-CCAACTTCAACTTCA
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCA
6133151 GGGGGATAAGACTTGCTTTCTCA
196 GGGGGATAAGACTTGCTTTCTCA
** * * *
6133174 GTCTAATCAGCTGCAACCTTAGGGAGATAAGACCTGATGCGATCAACTCTACTGCAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * * * * * *
6133239 AGATAGGATCTATTATTTCAATTCGCTCCACTACAACTTCAGGGAGACGGGATTACTGACTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
* * * *
6133304 TCTACTCCACTGCAAATTCAGGGAGATAAGATTCAACATCTTCAATATG-CCCACTTCAACTTCA
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCA
*
6133368 GGAGGATAAGACTTGCTTTCTCA
196 GGGGGATAAGACTTGCTTTCTCA
** * * * * * ** *
6133391 GTCTAATCCGCTGCAACCTTAGGGATATAAGACTTGAAGCGATCCACTCTACAACAACTTTAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * * * *
6133456 AGATAAGATCTGTTATTCGAATCCGCTCC-CTTGCAAGTTCAGGGAGATGGGATTAATGGCTTTA
66 AGATAAGATCTATTATTTGAATCCGCTCCAC-TGCAACTTCAGGGAGATGAGATTACTGGCTTTA
* * *
6133520 ATCTACTCCACTACAAACTCAGGGAGATAAGATTCATCATCTTCAGTATG-CCCACTTCAACTTC
130 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTC
* *
6133584 AGGGGGATAAGACTTACTTTCTCC
195 AGGGGGATAAGACTTGCTTTCTCA
* * * *
6133608 GTCTGCTCCGCTGCAACCTCAGGGGGATAAGACCTGATGCGATCAACTCTACTGCAATTTCAGGG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * *
6133673 ATATATGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTACTGGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
* ** * * * **
6133738 TCTACTCCACTACAAACTCAGGGAGATAAGATTTGCCATATTC-GATCTGCTCCACTACTGCTTC
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTGCCCCACTTCAACTTC
* *
6133802 AAGGGTATAAGACTTGCTTTCTCA
195 AGGGGGATAAGACTTGCTTTCTCA
6133826 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * *
6133891 AGATAGGATCTATTATTTGAATCCGCTACACTGCAACTTCAAGGAGATGAGATTACTGGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
* *
6133956 TCTACTCCAC-GCAAACTCAGGGAGATAAGATTCACCATATTCAGTCTACCCCACTTCAACTTCA
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCA
* *
6134020 AGGGGATTAGACTTGCTTTCTCA
196 GGGGGATAAGACTTGCTTTCTCA
* * *
6134043 ATCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTTAAAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * * * * *
6134108 AGATAATATCTATTATTTGAATCAGTTTCATTGCAACTTCAGGGAGATGGGATTACTGGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
*
6134173 TCTACCCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTGT-AACTTC
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACT-TCAACTTC
* * **
6134237 AAGGGGATAAGACTTTCTTTCTTT
195 AGGGGGATAAGACTTGCTTTCTCA
* * * * * * *
6134261 GTCTGCTCCGCTGCAGCATAAGGAACATAAGACCTGATACGATCTACTCTGCTGCAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * *
6134326 AGATAAGATCTGTTATTTGAATCCGCTCCATTGTAACTTCAGGGAGAT-AGGATTACTGGCTTTA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGA-GATTACTGGCTTTA
** ** * * * * * *
6134390 ATCTA-TCCCACTGCAAACTTGGGGAGATAAGATTTGCCATCTT-TGATATGCTCAACTACTACT
130 ATCTACT-CCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTGCCCCACTTCAACT
* *
6134453 TCAAGGGGATAAGACTTCCTTTCTCA
193 TCAGGGGGATAAGACTTGCTTTCTCA
* ** *
6134479 GTCTGCTCCGATTTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * * * * *
6134544 AGATAGGATCTATTATTTGAATTCACTCCACTGCAACTTCAGGGAGACGGGATCACTGGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
* ** * * * **
6134609 TCTACTCCTCTGCAAACTCAGGGAGATAAGATTTGCCATCTTC-GATTTGCTCCACTACTGCTT-
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTGCCCCACTTCAACTTC
* * *
6134672 AGGGAGATCAGA-TCTGC-TTCTTCG
195 AGGGGGATAAGACT-TGCTTTC-TCA
* * *
6134696 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATACGATCAACTCTACTGCAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * * * * * * *
6134761 AGATAAGATCTGTTATTTGATTCCACTCCACTACAACTTC-GAGAGATTA-ATTTCTAGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
* * * * * *
6134824 TGTACTCCACTGCAAACTCAGGGAGATAAGATTGACAATCTTTAGTCTACCCCACTTCATCTTCA
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCA
* *
6134889 GTGGGATAAGACTTGCTTTCTTA
196 GGGGGATAAGACTTGCTTTCTCA
* * * * * *
6134912 GTCTTCTCTGCTGTAACCTTAGGGATATAAGACTTGATGCGATCTACTCTACTGCAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* *
6134977 AGATAAGATCTGTTATTTGAATCCGCTCCATTGCAACTT-ATGGGAGATGAGATTACTGGCTTTA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCA-GGGAGATGAGATTACTGGCTTTA
* * *
6135041 ATCTACTCCACTGTAAACTCAGAGAGATAAGATTCACCATCTTCAGTCTACCCCACTTCAACTTC
130 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTC
*
6135106 AGGGGGATAGGACTTGCTTTCTCA
195 AGGGGGATAAGACTTGCTTTCTCA
* * * *
6135130 GTCTGCTCCGTTACAACCTCAGGGAGATAATACCTGATGCGATCTACTCTACTGCTACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
** * *
6135195 AGATTGGATCTATTATTTGAATCCGCTCCACTACAACTTCAGGGAGATGGGATTACTGGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
* * * * * * **
6135260 TCTACTCCATTGGAAACTTAGGGAGATAAGATTTACCATCTTC-GATCTGCTCCACTACTGCTTC
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTGCCCCACTTCAACTTC
* * * *
6135324 AAGGGGATAATACTTGTTTTCTTA
195 AGGGGGATAAGACTTGCTTTCTCA
* *
6135348 GTCTGCTCCTCTGCAACCTCAGGGAGATAACACCTGATGCGATCTACTCTACTGCAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* *
6135413 AGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGTGAGATGAGATTACTGGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
* ** * * * **
6135478 TCTACTCCACTACAAACTCAGGGAGATAAGATTTGCCATATTC-GATCTGCTCCACTACTGCTTC
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTGCCCCACTTCAACTTC
*
6135542 AAGGGGATAAGACTTGCTTTCTCA
195 AGGGGGATAAGACTTGCTTTCTCA
* * *
6135566 TTCTGCTCCGCTGTAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * * * * *
6135631 AGACAAGATATGTTATTTGAATCTGCTCCACTACAACTTCAGGGAGATG-GA-TACTAGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
* * *
6135694 TCTAAC-CCACTGCAAACTCAGGGAGATAAGATTCGCAATCTTCAGTCTACCCCACTTCAACTTC
131 TCT-ACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTC
* *
6135758 CGGGGGATAAGACTTGCTTTCTTA
195 AGGGGGATAAGACTTGCTTTCTCA
* * ** * *
6135782 GTCTTCTCCACTATAACCTTAGGG-GTATAAGACTTGATGCGATCTACTCTACTGCAACTTCAGA
1 GTCTGCTCCGCTGCAACCTCAGGGAG-ATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGA
* * * * * *
6135846 GAGATAGGATCTGTTATTTAAATCCGCTCCACTACAACTTCAGGGAGATGGGAGTACTGGCTTTA
65 GAGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTA
*
6135911 ATCTACTCCACTGCAAACTCAGGGAGATAGGATTCACCATCTTCAGTCTGCCCCACTTCAACTTC
130 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTC
*
6135976 AGGGGGATAAGACTTACTTTCTCA
195 AGGGGGATAAGACTTGCTTTCTCA
* * * * *
6136000 GTCTGCTCCGCTGCAACCTCAGGGATATAAGACCTGACGTGATCGACTCTACTGCTACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* *
6136065 AGATAGGATCTATTATTTGAATCCGCTCCACTGCAAATTCAGGGAGATGAGATTACTGGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
* * *** * * **
6136130 TATACTCCACTGCAAACTTAGGGAGATAAGATTTGTCATCTTC-GATCTGCTCCACTACTTCTTC
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTGCCCCACTTCAACTTC
* *
6136194 AAGGGGATAAGACTTACTTTCTCA
195 AGGGGGATAAGACTTGCTTTCTCA
* * *
6136218 GTCTGCTCCGCTGCAACCTCAGTGAGATAAGTCCTGATGCGATCTATTCTACTGCAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * * *
6136283 AGATATGATCTATTATTTGAATCCGCTCCACTGTAAATTTAGGGAGATG-GAATTACTGGCTTTA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAG-ATTACTGGCTTTA
** * * **
6136347 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTTGCCATCTTC-GATCTGCTCCACTACTGCTT
130 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTGCCCCACTTCAACTT
* **
6136411 -AGGGAGATAAGA-TCTGC-TTCTTTG
194 CAGGGGGATAAGACT-TGCTTTC-TCA
*
6136435 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * *
6136500 AGATAAGATCTACTATTTGAATCCGCTCCGCTGCAACTTTAGGGAGATGAGATTACTGGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
* * *
6136565 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACAATCTTCAGTCTGCCCCTCTTCAACTTTA
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCA
*
6136630 GGGGGATAAGACTTACTTTCTCA
196 GGGGGATAAGACTTGCTTTCTCA
* *
6136653 GTCTGCTCCGCTGCAACCTCAGGAAGATAAGACCTTATGCGATCTACTCTACTGCAACTTCTA-A
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTC-AGA
* * * * *
6136717 GAGATAAGATCTGTTATTTGAATCCGCTCCATTGTAACTTTAGGGAGATGGGATTACTGGCTTTA
65 GAGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTA
* * * * * *
6136782 ATCTACCCCACTGTAAACTGAGGGAGGTAAGATTCACCATATTCAGTTTGCCCCACTTCAACTTC
130 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTC
* * *
6136847 AGGGGGATATGACTCGCTTTCTTA
195 AGGGGGATAAGACTTGCTTTCTCA
* * * *
6136871 GTCTGCTCCGCTACAACATCAGGGAGATAAGACCTGATGCGATCTACTCTA-TTCAACTTTAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* *
6136935 AGATAGGATCTATTATTTGAATCTGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
*** * **
6137000 TCTACTCCACT-CAAACTCAGGGAGATAAGATTTGGCATCTTC-GATCTGCTCCA-TTACTGCTT
131 TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTGCCCCACTT-CAACTT
* **
6137062 -AGGGAGATAAGA-TCTGC-TTCTTTG
194 CAGGGGGATAAGACT-TGCTTTC-TCA
* * * *
6137086 GTCTGCCCCGCTGCAACCTCAGGGAGATAAAACCTGATGCGATCTACTCTACCGTAACTTCAGAG
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
* * ** * * * *
6137151 AGATAAGATCTATTATTTCAATCCGCTCTACTGCAAGATGAGGAAGAT-AGGATTATTGGCTTCA
66 AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGA-GATTACTGGCTTTA
* * * * ** *** * **
6137215 ATTTGCTCCACTGCAACCTCAGGGAGATAGGATTTGCCATCTTC-GATCTATTCCACTACTGCTT
130 ATCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAG-TCTGCCCCACTTCAACTT
* *
6137279 -AGGGAGATAAGA-TATGCTATTCTTCG
194 CAGGGGGATAAGACT-TGCT-TTC-TCA
** * * *
6137305 GTCTATTCCGCTGCAACTTCAGGGAGATAAGACTTGATGTGATC
1 GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATC
6137349 AACGATCTGT
Statistics
Matches: 7592, Mismatches: 1062, Indels: 177
0.86 0.12 0.02
Matches are distributed among these distances:
214 42 0.01
215 229 0.03
216 698 0.09
217 2314 0.30
218 3816 0.50
219 489 0.06
220 4 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (218 bp):
GTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAG
AGATAAGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAA
TCTACTCCACTGCAAACTCAGGGAGATAAGATTCACCATCTTCAGTCTGCCCCACTTCAACTTCA
GGGGGATAAGACTTGCTTTCTCA
Found at i:6129151 original size:608 final size:606
Alignment explanation
Indices: 6127794--6129152 Score: 1457
Period size: 608 Copynumber: 2.2 Consensus size: 606
6127784 GCTCCGCTGC
* * ** * * * * * *
6127794 AACCTCAGGGAGATAAGACCTGAAGCGATGTACTCTACTACAACTTCAGAGAGATAGGATCTATT
1 AACCTCAGAGAGATAAGACCTGATGCGACCTACTCCACTGCAACCTCAGAGAGATAAGATCTGTG
** * * * * * * * * *
6127859 ATTTGAATCCACTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTTAATCTACTCCACTGCA
66 ATGCGAATCTACTCCTCTACAACTTCAGAGAGATAAGATTACT-ACTTTAATCCACTCCAGTACA
* ** * * * * * * **
6127924 AACTCAGGGAGATAAGATTTGCCATATCCGATTTGCTCCACTACTGCTTCAAGGGGTTAAGACTT
130 AACTTAGGGAGATAAGATTCACCATATTCAATCTGCCCCATTTCAACTTCAAGGGGTTAAGACTT
* * * **
6127989 GCTTTCTCATTCTGCTCCGCTGTAACCTTAGGGAGATAAGACCTGATGCGATCTACTCTACTGCA
195 GCTTTCTCATTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATACGATCTACTCCACCACA
* * * *
6128054 ACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCAACTTCAGGGAGATGTGATTAC
260 ACTTCAGAGAGATAAGATCTATTATTCGAATCCGCTCCACTACAACTTCAGGGAGATGGGATTAC
* * ** * *
6128119 TCGTTTTAATCCACTCTACTGCAAACTCAGGGAGATAAGATTTGCCATCTTCGATCTGCTCTACT
325 TCGTTTTAATCCACTCCACTGAAAACTCAGGGAGATAAGATTCACCATCTTAGATCTGCTCCACT
** * * *
6128184 ACTGTTTAGGGAGATAACATCTGCTTTTTCAGTCTGCTCTGCTGTAACCTCAGGGAGATAAGACG
390 ACACTTCAGGGAGATAACATCTGCTTTCTCAGTCTGCTCTGCTGTAACCTCAGGGAGATAAGACC
* * * ** *
6128249 TGATGTGATCTACTCTACTGCAACTTCAGAGAGATAAAATCTGTTATTTGAATCTTCTCCATTGC
455 TGATGCGATCTACTCTACTACAACTTCAGAGAGATAAAATCTATTATTTGAATCCGCTCCACTGC
* *
6128314 AACTTTAGAGAGATAGGATTACTGGCTTTAATTTACCCCACTGCAAACTTAGAGAGATAAGATCT
520 AACTTTAGAGAGATAGGATTACTGGCTTTAATGTACCCCACTGCAAACTCAGAGAGATAAGATCT
* * * *
6128379 GCTTCTTCGGTCTGCTCCGCTGT
585 GCATATTCGATCTGCTCCAC-GT
* * * * * *
6128402 AACCTCAGAGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGAGATATGATCTGTT
1 AACCTCAGAGAGATAAGACCTGATGCGACCTACTCCACTGCAACCTCAGAGAGATAAGATCTGTG
** * * * * * *
6128467 ATTTGAATCTGCTCCTCTACAACTTCAGGGAGATGAGATTACTAGCTTTAATCTACTCCATTGCA
66 ATGCGAATCTACTCCTCTACAACTTCAGAGAGATAAGATTACTA-CTTTAATCCACTCCAGTACA
*
6128532 AACTTAGGGAGATAAGATTCACCATATTCAATCTGCCCCATTTCAACTTCAGGGGGTTAAGACTT
130 AACTTAGGGAGATAAGATTCACCATATTCAATCTGCCCCATTTCAACTTCAAGGGGTTAAGACTT
* * * *
6128597 GCTTTTTCAGTT-TGCTTCGCTGCAACCTTAGGGATATAAGACTTGATACGATCTACTCCACCAC
195 GCTTTCTCA-TTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATACGATCTACTCCACCAC
* *
6128661 AACTTCAGAGAGATAAGATCTGTTATTCGAATCCGCTCCATTACAACTTCAGGGAGATGGGATTA
259 AACTTCAGAGAGATAAGATCTATTATTCGAATCCGCTCCACTACAACTTCAGGGAGATGGGATTA
* *
6128726 CTGGTTTTAATCTACTCCACTGAAAACTCAGGGAGATAAGATTCACCATCTTTAG-TCTGC-CCA
324 CTCGTTTTAATCCACTCCACTGAAAACTCAGGGAGATAAGATTCACCATC-TTAGATCTGCTCCA
* * *
6128789 CTTCAACTTCAGGGAGATAAGA-CTTGCTTTCTCTGTCTGCTCTGCTGTAACCTCAGGGAGATAA
388 CTAC-ACTTCAGGGAGATAACATC-TGCTTTCTCAGTCTGCTCTGCTGTAACCTCAGGGAGATAA
* * **
6128853 GACCTGATGCGATGTAGTCTACTACAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCA
451 GACCTGATGCGATCTACTCTACTACAACTTCAGAGAGATAAAATCTATTATTTGAATCCGCTCCA
* * *
6128918 CTGCAACTTTAGGGAGAT-GAGATTACTGGCTTTAATGTACTCCACTGCAAACTCAGGGAGATAA
516 CTGCAACTTTAGAGAGATAG-GATTACTGGCTTTAATGTACCCCACTGCAAACTCAGAGAGATAA
*
6128982 GATTTGGCATATTCGATCTGCTCCAC-T
580 GATCT-GCATATTCGATCTGCTCCACGT
* * ** * * * * *
6129009 -ACTGCTTAGGGAGATAAGATCTACTTCTTCGGCCTGCTCCGCTGCAACCTCAGGGAGATAAGA-
1 AAC--CTCAGAGAGATAAGA-C--CTGATGCGACCTACTCCACTGCAACCTCAGAGAGATAAGAT
* * ** *
6129072 C-GTGATGCG-ATCTACT-GTACTGCAACTTCAGAGAGATAAGATATGTTA-TTTGAATCCGCTC
61 CTGTGATGCGAATCTACTCCT-CTACAACTTCAGAGAGATAAGAT-TACTACTTT-AATCCACTC
6129133 CAGTAC-AACTTCAGGGAGAT
123 CAGTACAAACTT-AGGGAGAT
6129153 TAATTACTAG
Statistics
Matches: 631, Mismatches: 104, Indels: 32
0.82 0.14 0.04
Matches are distributed among these distances:
606 2 0.00
607 17 0.03
608 553 0.88
609 30 0.05
610 1 0.00
611 28 0.04
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (606 bp):
AACCTCAGAGAGATAAGACCTGATGCGACCTACTCCACTGCAACCTCAGAGAGATAAGATCTGTG
ATGCGAATCTACTCCTCTACAACTTCAGAGAGATAAGATTACTACTTTAATCCACTCCAGTACAA
ACTTAGGGAGATAAGATTCACCATATTCAATCTGCCCCATTTCAACTTCAAGGGGTTAAGACTTG
CTTTCTCATTCTGCTCCGCTGCAACCTTAGGGAGATAAGACCTGATACGATCTACTCCACCACAA
CTTCAGAGAGATAAGATCTATTATTCGAATCCGCTCCACTACAACTTCAGGGAGATGGGATTACT
CGTTTTAATCCACTCCACTGAAAACTCAGGGAGATAAGATTCACCATCTTAGATCTGCTCCACTA
CACTTCAGGGAGATAACATCTGCTTTCTCAGTCTGCTCTGCTGTAACCTCAGGGAGATAAGACCT
GATGCGATCTACTCTACTACAACTTCAGAGAGATAAAATCTATTATTTGAATCCGCTCCACTGCA
ACTTTAGAGAGATAGGATTACTGGCTTTAATGTACCCCACTGCAAACTCAGAGAGATAAGATCTG
CATATTCGATCTGCTCCACGT
Found at i:6129571 original size:825 final size:823
Alignment explanation
Indices: 6127577--6129593 Score: 1846
Period size: 825 Copynumber: 2.4 Consensus size: 823
6127567 GCTTCGCTGC
* * * * * *
6127577 AACCTCAGGGAGATAAGCCGTGATACGATCTACTCTATTACAACTTCAGAGAGATAAGATCTGTT
1 AACCTCAGAGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTG
** ** * * ** ** * *
6127642 ATTTGAATCCGCT-CTATTACAACTTTAG-GAAGATGGGATTACTGGTTTTAATCTACTCCACTG
66 ATGCGAATCTACTCCT-CTACAACTTCAGAG-AGATAAGATTACT-ACTTTAATCCACTCCATTG
* * * * ** * * * *
6127705 CAAACTTAGGGAGATAAGATTCATCATATTTAGTC-GGCCCACT-TCAACTTCAAGGAGATGAGG
128 CAAACTTAGGGAGATAAGATTCACCAGATTCAATCTACCCCA-TACCAACTTCAGGGAGATAAGA
* * * * * * * * * * *
6127768 CATGC-TTTCTCTGTCTGCTCCGCTGCAACCTCAGGGAGATAAGACCTGA-AGCGATGTACTCTA
192 CTTCCATCT-TCAGTCTGCCCCACTGCAACCTTAGGGAGATAAGACTTGATA-CCATCTACTCCA
* * * * * * ** * * *
6127831 CTACAACTTCAGAGAGATAGGATCTATTATTTGAATCCACTCCACTGCAACTTCAGGGAGATGAG
255 CCACAACCTCAGAGAGATAAGAGCTGTGATGCGAATCCACTCCACTACAACTTCAGAGAGATGGG
* * * * ** * ** *
6127896 ATTACTGGCTTT-AATCTACTCCACTGCAAAC-TCAGGGAGATAAGATTTGCCAT-ATCCGATTT
320 ATTACT-GATTTGAATCCACTCCACT-AAAACTTAAGGGAGATAAGATTCACCATCTTTAG-TCT
* ** * *
6127958 GCTCCACTACTGCTTCAAGGG-GTTAAGACTTGCTTTCTCATTCTGCTCCGCTGTAACCTTAGGG
382 GC-CCACTTCAACTTC-AGGGAGATAAGACTTGCTTTCTCATTCTGCTCCGCTGTAACCTCAGGG
*
6128022 AGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAGGATCTATTATTTGAATCC
445 AGATAAGACCTGATGCGATCTACTCTACTACAACTTCAGAGAGATAGGATCTATTATTTGAATCC
* * *
6128087 GCTCCACTGCAACTTCAGGGAGATGTGATTACTCGTTTTAATCCACTCTACTGCAAACTCAGGGA
510 GCTCCACTGCAACTTCAGGGAGATGAGATTACTCGCTTTAATCCACTCCACTGCAAACTCAGGGA
* * * * * *
6128152 GATAAGATTTGCCATCTTCGATCTGCTCTACTACTGTTTAGGGAGATAACATCTGCTTTTTCAGT
575 GATAAGATTTGCCATATTCGATCTGCTCCACTACTGCTTAGGGAGATAACATCTACTTCTTCAGC
* * *
6128217 CTGCTCTGCTGTAACCTCAGGGAGATAAGACGTGATGTGATCTACTCTACTGCAACTTCAGAGAG
640 CTGCTCCGCTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGAG
* ** * * * * *
6128282 ATAAAATCTGTTATTTGAATCTTCTCCATTGCAACTTTAGAGAGATAGGATTACTGGCTTTAATT
705 ATAAAATATGTTATTTGAATCCGCTCCAGTACAACTTCAGAGAGATA-GATTACTAGCTTTAATC
* * * * * * *
6128347 TACCCCACTGCAAACTTAGAGAGATAAGATCTGCTTCTTCGGTCTGCTCCGCTGT
769 TACCCCACTGCAAACTCAGAGAGATAAGATCTACATCTTCAGTCTACCCCACTGT
* *
6128402 AACCTCAGAGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGAGATATGATCTGTT
1 AACCTCAGAGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTG
** * * * *
6128467 ATTTGAATCTGCTCCTCTACAACTTCAGGGAGATGAGATTACTAGCTTTAATCTACTCCATTGCA
66 ATGCGAATCTACTCCTCTACAACTTCAGAGAGATAAGATTACTA-CTTTAATCCACTCCATTGCA
* * ** * *
6128532 AACTTAGGGAGATAAGATTCACCATATTCAATCTGCCCCATTTCAACTTCAGGGGGTTAAGACTT
130 AACTTAGGGAGATAAGATTCACCAGATTCAATCTACCCCATACCAACTTCAGGGAGATAAGACTT
* * * * ** * * *
6128597 GCTTTTTCAGTTTGCTTCGCTGCAACCTTAGGGATATAAGACTTGATACGATCTACTCCACCACA
195 CCATCTTCAGTCTGCCCCACTGCAACCTTAGGGAGATAAGACTTGATACCATCTACTCCACCACA
* * * * * * *
6128662 ACTTCAGAGAGATAAGATCTGTTATTCGAATCCGCTCCATTACAACTTCAGGGAGATGGGATTAC
260 ACCTCAGAGAGATAAGAGCTGTGATGCGAATCCACTCCACTACAACTTCAGAGAGATGGGATTAC
* * * *
6128727 TGGTTTTAATCTACTCCACTGAAAAC-TCAGGGAGATAAGATTCACCATCTTTAGTCTGCCCACT
325 TGATTTGAATCCACTCCACT-AAAACTTAAGGGAGATAAGATTCACCATCTTTAGTCTGCCCACT
*
6128791 TCAACTTCAGGGAGATAAGACTTGCTTTCTC-TGTCTGCTCTGCTGTAACCTCAGGGAGATAAGA
389 TCAACTTCAGGGAGATAAGACTTGCTTTCTCAT-TCTGCTCCGCTGTAACCTCAGGGAGATAAGA
* *
6128855 CCTGATGCGATGTAGTCTACTACAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACT
453 CCTGATGCGATCTACTCTACTACAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACT
* * **
6128920 GCAACTTTAGGGAGATGAGATTACTGGCTTTAATGTACTCCACTGCAAACTCAGGGAGATAAGAT
518 GCAACTTCAGGGAGATGAGATTACTCGCTTTAATCCACTCCACTGCAAACTCAGGGAGATAAGAT
* * *
6128985 TTGGCATATTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACTTCTTCGGCCTGCTCCG
583 TTGCCATATTCGATCTGCTCCACTACTGCTTAGGGAGATAACATCTACTTCTTCAGCCTGCTCCG
* *
6129050 CTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTGTACTGCAACTTCAGAGAGATAAGATA
648 CTGCAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAAATA
* *
6129115 TGTTATTTGAATCCGCTCCAGTACAACTTCAGGGAGATTA-ATTACTAGCTTTAATCTACTCCAC
713 TGTTATTTGAATCCGCTCCAGTACAACTTCAGAGAGA-TAGATTACTAGCTTTAATCTACCCCAC
*
6129179 TGCAAACTCAGGGAGATAAGAT-TCACAATCTTCAGTCTACCCCACT-T
777 TGCAAACTCAGAGAGATAAGATCT-AC-ATCTTCAGTCTACCCCACTGT
* * * * * * * * * * *
6129226 CAACTTCAGTGGGATAAGACTTGCTTTCTTAGTCTTCTCTGCTGCAACCTT-AGGGATATAAGA-
1 -AACCTCAGAGAGATAAGACGTG-ATGC-GA-TCTACTCTACTGCAA-CTTCAGAGAGATAAGAT
* ** *
6129289 CT-TGATGCG-ATCTACT-CTACTGCAACTTCAGAGAGATAAGATCTGTTA-TTTGAATCCGCTC
61 CTGTGATGCGAATCTACTCCT-CTACAACTTCAGAGAGATAAGAT-TACTACTTT-AATCCACTC
** ** * * *
6129350 CATTGC-AACTTCAGGGAGATGGGATT-ACTGGCTTTAATCTACTCCACTACCAAC-TCAGGGAG
123 CATTGCAAACTT-AGGGAGATAAGATTCACCAGATTCAATCTACCCCA-TACCAACTTCAGGGAG
* * *
6129412 ATAAGA-TTCACCATCTTCAGTCTGCCCCACTTCAA-CTTCAAGGG-GATAAGACTTGCTTTCTC
186 ATAAGACTT--CCATCTTCAGTCTGCCCCACTGCAACCTT--AGGGAGATAAGACTTG-ATAC-C
* ** ** * * * * *
6129474 AGTCTGCTCTGCTGCAACCTCAGGGAGATAAG-GCT-TGATGCG-ATCTACTCTACTGCTACTTC
245 A-TCTACTCCACCACAACCTCAGAGAGATAAGAGCTGTGATGCGAATCCACTCCACTACAACTTC
* * * * * *
6129536 ATAGAGATTGGATCTA-TTATTTGAATCCGCTCCACTACAACTTAAGGGAGATGAGATT
309 AGAGAGATGGGAT-TACTGATTTGAATCCACTCCACTAAAACTTAAGGGAGATAAGATT
6129594 ACTGGCTTTA
Statistics
Matches: 989, Mismatches: 170, Indels: 66
0.81 0.14 0.05
Matches are distributed among these distances:
823 3 0.00
824 90 0.09
825 636 0.64
826 200 0.20
827 12 0.01
828 45 0.05
829 3 0.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (823 bp):
AACCTCAGAGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTG
ATGCGAATCTACTCCTCTACAACTTCAGAGAGATAAGATTACTACTTTAATCCACTCCATTGCAA
ACTTAGGGAGATAAGATTCACCAGATTCAATCTACCCCATACCAACTTCAGGGAGATAAGACTTC
CATCTTCAGTCTGCCCCACTGCAACCTTAGGGAGATAAGACTTGATACCATCTACTCCACCACAA
CCTCAGAGAGATAAGAGCTGTGATGCGAATCCACTCCACTACAACTTCAGAGAGATGGGATTACT
GATTTGAATCCACTCCACTAAAACTTAAGGGAGATAAGATTCACCATCTTTAGTCTGCCCACTTC
AACTTCAGGGAGATAAGACTTGCTTTCTCATTCTGCTCCGCTGTAACCTCAGGGAGATAAGACCT
GATGCGATCTACTCTACTACAACTTCAGAGAGATAGGATCTATTATTTGAATCCGCTCCACTGCA
ACTTCAGGGAGATGAGATTACTCGCTTTAATCCACTCCACTGCAAACTCAGGGAGATAAGATTTG
CCATATTCGATCTGCTCCACTACTGCTTAGGGAGATAACATCTACTTCTTCAGCCTGCTCCGCTG
CAACCTCAGGGAGATAAGACGTGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAAATATGT
TATTTGAATCCGCTCCAGTACAACTTCAGAGAGATAGATTACTAGCTTTAATCTACCCCACTGCA
AACTCAGAGAGATAAGATCTACATCTTCAGTCTACCCCACTGT
Found at i:6137052 original size:44 final size:43
Alignment explanation
Indices: 6136954--6137035 Score: 107
Period size: 43 Copynumber: 1.9 Consensus size: 43
6136944 CTATTATTTG
*
6136954 AATCTGCTCCACTGCAACTTCAGGGAGATGAGATTACTGGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTA-TGGCTTT
*
6136998 AATCTACTCCACT-CAAAC-TCAGGGAGATAAGATT-TGGC
1 AATCTGCTCCACTGC-AACTTCAGGGAGATAAGATTATGGC
6137036 ATCTTCGATC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
41 4 0.11
43 16 0.46
44 15 0.43
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (43 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATGGCTTT
Found at i:6137303 original size:45 final size:45
Alignment explanation
Indices: 6137221--6137336 Score: 126
Period size: 45 Copynumber: 2.6 Consensus size: 45
6137211 TTCAATTTGC
* * * *
6137221 TCCACTGCAACCTCAGGGAGATAGGATTTGCCATCTTCGATCTAT
1 TCCACTACAACTTCAGGGAGATAAGATATGCCATCTTCGATCTAT
** * *
6137266 TCCACTACTGCTT-AGGGAGATAAGATATGCTATTCTTCGGTCTAT
1 TCCACTACAACTTCAGGGAGATAAGATATGCCA-TCTTCGATCTAT
* *
6137311 TCCGCTGCAACTTCAGGGAGATAAGA
1 TCCACTACAACTTCAGGGAGATAAGA
6137337 CTTGATGTGA
Statistics
Matches: 57, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
44 16 0.28
45 29 0.51
46 12 0.21
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (45 bp):
TCCACTACAACTTCAGGGAGATAAGATATGCCATCTTCGATCTAT
Found at i:6138801 original size:20 final size:19
Alignment explanation
Indices: 6138757--6138801 Score: 90
Period size: 19 Copynumber: 2.4 Consensus size: 19
6138747 TCCTCTAAAG
6138757 TCTTTTTGCATAGGAAGAA
1 TCTTTTTGCATAGGAAGAA
6138776 TCTTTTTGCATAGGAAGAA
1 TCTTTTTGCATAGGAAGAA
6138795 TCTTTTT
1 TCTTTTT
6138802 TAGCACCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.27, C:0.11, G:0.18, T:0.44
Consensus pattern (19 bp):
TCTTTTTGCATAGGAAGAA
Found at i:6141192 original size:21 final size:21
Alignment explanation
Indices: 6141167--6141219 Score: 106
Period size: 21 Copynumber: 2.5 Consensus size: 21
6141157 CTTGAGTTGA
6141167 AATTTTCTCAATCTTGAAAAT
1 AATTTTCTCAATCTTGAAAAT
6141188 AATTTTCTCAATCTTGAAAAT
1 AATTTTCTCAATCTTGAAAAT
6141209 AATTTTCTCAA
1 AATTTTCTCAA
6141220 GACTTGAACA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.38, C:0.15, G:0.04, T:0.43
Consensus pattern (21 bp):
AATTTTCTCAATCTTGAAAAT
Found at i:6148721 original size:22 final size:23
Alignment explanation
Indices: 6148687--6148731 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
6148677 CGAAACCATT
6148687 TTTAATTTAAAAAAAAAG-GGGA
1 TTTAATTTAAAAAAAAAGTGGGA
* * *
6148709 TTTACTTTGAAAATAAAGTGGGA
1 TTTAATTTAAAAAAAAAGTGGGA
6148732 GTCACCACCA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.47, C:0.02, G:0.20, T:0.31
Consensus pattern (23 bp):
TTTAATTTAAAAAAAAAGTGGGA
Found at i:6156448 original size:25 final size:24
Alignment explanation
Indices: 6156420--6156476 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
6156410 TGATGATGGA
6156420 AAAAAGGAAAAGAAA-AAGTAAAGAG
1 AAAAAGGAAAAGAAAGAAG--AAGAG
*
6156445 AAAAAGAAAAAGAAAGAAGAAGAG
1 AAAAAGGAAAAGAAAGAAGAAGAG
*
6156469 GAAAAGGA
1 AAAAAGGA
6156477 GAGGCCAAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 11 0.39
25 14 0.50
26 3 0.11
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (24 bp):
AAAAAGGAAAAGAAAGAAGAAGAG
Found at i:6156464 original size:13 final size:12
Alignment explanation
Indices: 6156420--6156465 Score: 56
Period size: 13 Copynumber: 3.7 Consensus size: 12
6156410 TGATGATGGA
*
6156420 AAAAAGGAAAAG
1 AAAAAGAAAAAG
*
6156432 AAAAAGTAAAGAG
1 AAAAAG-AAAAAG
6156445 AAAAAGAAAAAG
1 AAAAAGAAAAAG
6156457 AAAGAAGAA
1 AAA-AAGAA
6156466 GAGGAAAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
12 14 0.48
13 15 0.52
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (12 bp):
AAAAAGAAAAAG
Found at i:6156476 original size:6 final size:6
Alignment explanation
Indices: 6156420--6156465 Score: 56
Period size: 6 Copynumber: 7.3 Consensus size: 6
6156410 TGATGATGGA
* *
6156420 AAAAAG GAAAAG AAAAAG TAAAGAG AAAAAG AAAAAG AAAGAAG AA
1 AAAAAG AAAAAG AAAAAG -AAAAAG AAAAAG AAAAAG AAA-AAG AA
6156466 GAGGAAAAGG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
6 24 0.71
7 10 0.29
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (6 bp):
AAAAAG
Found at i:6157881 original size:44 final size:43
Alignment explanation
Indices: 6157830--6157994 Score: 195
Period size: 44 Copynumber: 4.0 Consensus size: 43
6157820 CGATGACCCC
*
6157830 AGTCCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAAATTGT
1 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGT
* *
6157873 AGGTCCTATCTCCTTGGTCAGCAGTGGAATAGTTTGAAAATTGT
1 A-GTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGT
* *
6157917 AAATCCTATCTCCTTGGTCAGCAGTGGAATAGG-TG---A----
1 -AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGT
*
6157953 A-TCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT
1 AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGT
6157995 GAATCTTACT
Statistics
Matches: 106, Mismatches: 6, Indels: 21
0.80 0.05 0.16
Matches are distributed among these distances:
34 29 0.27
35 3 0.03
38 1 0.01
40 1 0.01
43 3 0.03
44 68 0.64
45 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
AGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAAATTGT
Found at i:6157961 original size:34 final size:34
Alignment explanation
Indices: 6157918--6157984 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
6157908 GAAAATTGTA
*
6157918 AATCCTATCTCCTTGGTCAGCAGTGGAATAGGTG
1 AATCCTATCTCCCTGGTCAGCAGTGGAATAGGTG
6157952 AATCCTATCTCCCTGGTCAGCAGTGGAATAGGT
1 AATCCTATCTCCCTGGTCAGCAGTGGAATAGGT
6157985 TGAAGATTGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.28
Consensus pattern (34 bp):
AATCCTATCTCCCTGGTCAGCAGTGGAATAGGTG
Found at i:6158274 original size:167 final size:168
Alignment explanation
Indices: 6157992--6158306 Score: 443
Period size: 167 Copynumber: 1.9 Consensus size: 168
6157982 GGTTGAAGAT
* * *
6157992 TGTGAATCTTACTTCCCTGACGTTATAGAGGAGCAGATTAAAGCTGAAGGCAGCGAATCTTATCT
1 TGTGAATCTTACTTCCCTGACGTTATAGAGGAGCAGATTAAAGCTCAAGACAGCGAATATTATCT
6158057 CCCTAGCATTAAGACTTGAAATAGCTAAAGCGGAGAGGATTAAAGCTGTGGGCAGCGAATCCTAT
66 CCCTAGCATTAAGACTTGAAATAGCTAAAGCGGAGAGGATTAAAGCTGTGGGCAGCGAATCCTAT
6158122 CTCTTTGGCATTACAGTGAAATAGATTGAAGCCAAAAC
131 CTCTTTGGCATTACAGTGAAATAGATTGAAGCCAAAAC
* * * * * * * *
6158160 TGTGAATTTTACTTCCCTGATGTTGTAGCGGAGTAGATTGAAGC-CACGACGGCGAATATTATCT
1 TGTGAATCTTACTTCCCTGACGTTATAGAGGAGCAGATTAAAGCTCAAGACAGCGAATATTATCT
* * * * * * * * *
6158224 CCCTGGCGTTAAGGCTTGGATTAGCTGAAGTGGAGCGGATTGAAGCTGTGGGCAGCGAATCCTAT
66 CCCTAGCATTAAGACTTGAAATAGCTAAAGCGGAGAGGATTAAAGCTGTGGGCAGCGAATCCTAT
6158289 CTCTTTGGCATTACAGTG
131 CTCTTTGGCATTACAGTG
6158307 GAGCAGATTA
Statistics
Matches: 127, Mismatches: 20, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
167 89 0.70
168 38 0.30
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (168 bp):
TGTGAATCTTACTTCCCTGACGTTATAGAGGAGCAGATTAAAGCTCAAGACAGCGAATATTATCT
CCCTAGCATTAAGACTTGAAATAGCTAAAGCGGAGAGGATTAAAGCTGTGGGCAGCGAATCCTAT
CTCTTTGGCATTACAGTGAAATAGATTGAAGCCAAAAC
Found at i:6158367 original size:167 final size:167
Alignment explanation
Indices: 6157995--6158383 Score: 420
Period size: 167 Copynumber: 2.3 Consensus size: 167
6157985 TGAAGATTGT
* * * * * * * * * *
6157995 GAATCTTACTTCCCTGACGTTATAGAGGAGCAGATTAAAGCTGAAGGCAGCGAATCTTATCTCCC
1 GAATCTTACTCCCCTGACGGTGTAGCGGAACAGATTGAAGC-CACGACAGCGAATATTATCTCCC
6158060 TAGCATTAAGACTTGAAATAGCTAAAGCGGAGAGGATTAAAGCTGTGGGCAGCGAATCCTATCTC
65 TAGCATTAAGACTTGAAATAGCTAAAGCGGAGAGGATTAAAGCTGTGGGCAGCGAATCCTATCTC
* * *
6158125 TTTGGCATTACAGTGAAATAGATTGAAGCCAAAACTGT
130 TTTGGCATTACAGTGAAACAGATTAAAGCCAAAACTGC
* * * * ** *
6158163 GAATTTTACTTCCCTGATGTTGTAGCGGAGTAGATTGAAGCCACGACGGCGAATATTATCTCCCT
1 GAATCTTACTCCCCTGACGGTGTAGCGGAACAGATTGAAGCCACGACAGCGAATATTATCTCCCT
* * * * * * * * *
6158228 GGCGTTAAGGCTTGGATTAGCTGAAGTGGAGCGGATTGAAGCTGTGGGCAGCGAATCCTATCTCT
66 AGCATTAAGACTTGAAATAGCTAAAGCGGAGAGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
* * **
6158293 TTGGCATTACAGTGGAGCAGATTAAAGCCGCAA-TGGC
131 TTGGCATTACAGTGAAACAGATTAAAGCCAAAACT-GC
* * * *
6158330 GGATCTTACTCCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGACAGCGAAT
1 GAATCTTACTCCCCTGACGGTGTAGCGGAACAGATTGAAGCCACGACAGCGAAT
6158384 CTAGTTTCCC
Statistics
Matches: 182, Mismatches: 38, Indels: 3
0.82 0.17 0.01
Matches are distributed among these distances:
166 1 0.01
167 146 0.80
168 35 0.19
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (167 bp):
GAATCTTACTCCCCTGACGGTGTAGCGGAACAGATTGAAGCCACGACAGCGAATATTATCTCCCT
AGCATTAAGACTTGAAATAGCTAAAGCGGAGAGGATTAAAGCTGTGGGCAGCGAATCCTATCTCT
TTGGCATTACAGTGAAACAGATTAAAGCCAAAACTGC
Found at i:6158439 original size:100 final size:101
Alignment explanation
Indices: 6158335--6158620 Score: 452
Period size: 101 Copynumber: 2.8 Consensus size: 101
6158325 ATGGCGGATC
* **
6158335 TTACTCCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGACAGCGAATCTAGTTTCCCCAACAT
1 TTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGATGGCGAATCTAGTTTCCCCAACAT
*
6158400 TGCAATTAAAAAGATTGAAGCCGC-AACTGCAAATT
66 TGCAATTAAAAAGATTGAAGCCGCAAACGGCAAATT
* *
6158435 TTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAATGGCGAATCTCGTTTCCCCAACAT
1 TTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGATGGCGAATCTAGTTTCCCCAACAT
*
6158500 TGCAATTAAAAAGATTGAAGCCGCAAACGGCGAATT
66 TGCAATTAAAAAGATTGAAGCCGCAAACGGCAAATT
* *
6158536 TTACTTCCCTGGCAGTGTAGTGGAACAGATTGAAGCTACGATGGTGAATCTTA-TTTCCCCAACA
1 TTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGATGGCGAATC-TAGTTTCCCCAACA
6158600 TTGCAATGT-AAAAGATTGAAG
65 TTGCAAT-TAAAAAGATTGAAG
6158621 ATGGCGAGTC
Statistics
Matches: 172, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
100 84 0.49
101 86 0.50
102 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (101 bp):
TTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGATGGCGAATCTAGTTTCCCCAACAT
TGCAATTAAAAAGATTGAAGCCGCAAACGGCAAATT
Found at i:6158566 original size:51 final size:50
Alignment explanation
Indices: 6158303--6158571 Score: 144
Period size: 50 Copynumber: 5.4 Consensus size: 50
6158293 TTGGCATTAC
* * * * * * *
6158303 AGTGGAGCAGATTAAAGCCGCAATGGCGGATCTTACTCCCCTGGCGGTGT
1 AGTGGAACAGATTGAAGCCGCAACGGCGAATTTTACTTCCCTGGCAGTGT
** * * * * *** * *
6158353 AGTGGAACAGATTGAAGCTACGACAGCGAA-TCTAGTTTCCCCAACATTGC
1 AGTGGAACAGATTGAAGCCGCAACGGCGAATTTTA-CTTCCCTGGCAGTGT
* ** * * * *
6158403 AATTAAAAAGATTGAAGCCGCAACTGCAAATTTTACTTCCCTGGCGGTGT
1 AGTGGAACAGATTGAAGCCGCAACGGCGAATTTTACTTCCCTGGCAGTGT
** * * *** *** * *
6158453 AGTGGAACAGATTGAAGCTACAATGGCGAATCTCGTTTCCCCAACATTGC
1 AGTGGAACAGATTGAAGCCGCAACGGCGAATTTTACTTCCCTGGCAGTGT
* ** *
6158503 AATTAAAAAGATTGAAGCCGCAAACGGCGAATTTTACTTCCCTGGCAGTGT
1 AGTGGAACAGATTGAAGCCGC-AACGGCGAATTTTACTTCCCTGGCAGTGT
6158554 AGTGGAACAGATTGAAGC
1 AGTGGAACAGATTGAAGC
6158572 TACGATGGTG
Statistics
Matches: 142, Mismatches: 74, Indels: 5
0.64 0.33 0.02
Matches are distributed among these distances:
49 2 0.01
50 104 0.73
51 36 0.25
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (50 bp):
AGTGGAACAGATTGAAGCCGCAACGGCGAATTTTACTTCCCTGGCAGTGT
Found at i:6158585 original size:101 final size:100
Alignment explanation
Indices: 6158311--6158620 Score: 462
Period size: 100 Copynumber: 3.1 Consensus size: 100
6158301 ACAGTGGAGC
* * * * *
6158311 AGATTAAAGCCGCAATGGCGGATCTTACTCCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
1 AGATTGAAGCCGCAACGGCGAATTTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
**
6158376 CAGCGAATCTAGTTTCCCCAACATTGCAATTAAAA
66 TGGCGAATCTAGTTTCCCCAACATTGCAATTAAAA
* * *
6158411 AGATTGAAGCCGCAACTGCAAATTTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACAA
1 AGATTGAAGCCGCAACGGCGAATTTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
*
6158476 TGGCGAATCTCGTTTCCCCAACATTGCAATTAAAA
66 TGGCGAATCTAGTTTCCCCAACATTGCAATTAAAA
*
6158511 AGATTGAAGCCGCAAACGGCGAATTTTACTTCCCTGGCAGTGTAGTGGAACAGATTGAAGCTACG
1 AGATTGAAGCCGC-AACGGCGAATTTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
*
6158576 ATGGTGAATCTTA-TTTCCCCAACATTGCAATGT-AAA
65 ATGGCGAATC-TAGTTTCCCCAACATTGCAAT-TAAAA
6158612 AGATTGAAG
1 AGATTGAAG
6158621 ATGGCGAGTC
Statistics
Matches: 190, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
100 102 0.54
101 86 0.45
102 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (100 bp):
AGATTGAAGCCGCAACGGCGAATTTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
TGGCGAATCTAGTTTCCCCAACATTGCAATTAAAA
Found at i:6158616 original size:50 final size:50
Alignment explanation
Indices: 6158461--6158620 Score: 142
Period size: 50 Copynumber: 3.2 Consensus size: 50
6158451 GTAGTGGAAC
**
6158461 AGATTGAAGCTACAATGGCGAATCTCGTTTCCCCAACATTGCAAT-TAAAA
1 AGATTGAAGCTACAATGGCGAATCTTATTTCCCCAACATTGCAATGT-AAA
** * * * *** * * * * *
6158511 AGATTGAAGCCGCAAACGGCGAATTTTACTTCCCTGGCAGTGTAGTGGAAC
1 AGATTGAAGCTAC-AATGGCGAATCTTATTTCCCCAACATTGCAATGTAAA
* *
6158562 AGATTGAAGCTACGATGGTGAATCTTATTTCCCCAACATTGCAATGTAAA
1 AGATTGAAGCTACAATGGCGAATCTTATTTCCCCAACATTGCAATGTAAA
6158612 AGATTGAAG
1 AGATTGAAG
6158621 ATGGCGAGTC
Statistics
Matches: 78, Mismatches: 30, Indels: 4
0.70 0.27 0.04
Matches are distributed among these distances:
50 44 0.56
51 34 0.44
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.26
Consensus pattern (50 bp):
AGATTGAAGCTACAATGGCGAATCTTATTTCCCCAACATTGCAATGTAAA
Found at i:6159254 original size:19 final size:19
Alignment explanation
Indices: 6159230--6159283 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
6159220 AATCTTCAAG
*
6159230 GATATGCAATTTTAGATAT
1 GATATGCAATCTTAGATAT
*
6159249 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
6159268 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
6159284 AGATATGATT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:6159274 original size:38 final size:41
Alignment explanation
Indices: 6159230--6159306 Score: 106
Period size: 42 Copynumber: 1.9 Consensus size: 41
6159220 AATCTTCAAG
*
6159230 GATATGCAAT-TT-TAGATATGA-TATGTAATCTTAGATAT
1 GATATGCAATCTTAAAGATATGATTATGTAATCTTAGATAT
*
6159268 GATATGCAATCTTAGAAGATATGATTTTGTAATCTTAGA
1 GATATGCAATCTTA-AAGATATGATTATGTAATCTTAGA
6159307 GATTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
38 10 0.30
39 2 0.06
41 8 0.24
42 13 0.39
ACGTcount: A:0.36, C:0.06, G:0.17, T:0.40
Consensus pattern (41 bp):
GATATGCAATCTTAAAGATATGATTATGTAATCTTAGATAT
Found at i:6159487 original size:22 final size:20
Alignment explanation
Indices: 6159462--6159506 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
6159452 TTTACTCAAA
*
6159462 TTTCTCTCTCTTGCGTTCTTAT
1 TTTCTCTCGCTT--GTTCTTAT
*
6159484 TTTCTCTGGCTTGTTCTTAT
1 TTTCTCTCGCTTGTTCTTAT
6159504 TTT
1 TTT
6159507 GTTGATTTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 11 0.52
22 10 0.48
ACGTcount: A:0.04, C:0.22, G:0.11, T:0.62
Consensus pattern (20 bp):
TTTCTCTCGCTTGTTCTTAT
Found at i:6159567 original size:2 final size:2
Alignment explanation
Indices: 6159556--6159585 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
6159546 TTTCTAATGA
6159556 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6159586 CGCACATGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6162385 original size:96 final size:96
Alignment explanation
Indices: 6162221--6162411 Score: 373
Period size: 96 Copynumber: 2.0 Consensus size: 96
6162211 AATGATATCG
*
6162221 AACTTAAAATTTCTTTAGAAGTAAAAGAATAAATAAGTGAATAATAGATAAAACAAATGTAAACA
1 AACTTAAAATTTCTTTAGAAGTAAAAGAATAAATAAGTGAATAATACATAAAACAAATGTAAACA
6162286 TTATTAAATTTAAGCATTTGAAAAGTAAAAA
66 TTATTAAATTTAAGCATTTGAAAAGTAAAAA
6162317 AACTTAAAATTTCTTTAGAAGTAAAAGAATAAATAAGTGAATAATACATAAAACAAATGTAAACA
1 AACTTAAAATTTCTTTAGAAGTAAAAGAATAAATAAGTGAATAATACATAAAACAAATGTAAACA
6162382 TTATTAAATTTAAGCATTTGAAAAGTAAAA
66 TTATTAAATTTAAGCATTTGAAAAGTAAAA
6162412 GAATCATAAA
Statistics
Matches: 94, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 94 1.00
ACGTcount: A:0.55, C:0.06, G:0.10, T:0.29
Consensus pattern (96 bp):
AACTTAAAATTTCTTTAGAAGTAAAAGAATAAATAAGTGAATAATACATAAAACAAATGTAAACA
TTATTAAATTTAAGCATTTGAAAAGTAAAAA
Found at i:6162437 original size:69 final size:67
Alignment explanation
Indices: 6162335--6162493 Score: 165
Period size: 68 Copynumber: 2.3 Consensus size: 67
6162325 ATTTCTTTAG
* * * *
6162335 AAGTAAAAGAATAAATAAGTGAATAATACATAAAACAAATGTAAACATTATTAAATTTAAGCATT
1 AAGTAAAAGAAT-AATAAATAAATAATACATAAAACAAATGTAAACAATATT-AATTTAAACATT
6162400 TGAA
64 TGAA
* * ** ** * *
6162404 AAGTAAAAGAATCATAAATAAATAAATAGATAAAGTAAATGTTCATAATATTAATTTAAATATTT
1 AAGTAAAAGAATAATAAATAAAT-AATACATAAAACAAATGTAAACAATATTAATTTAAACATTT
*
6162469 TAA
65 GAA
*
6162472 AAGTAAAAGAATGATAAATAAA
1 AAGTAAAAGAATAATAAATAAA
6162494 AGTAAAAAAA
Statistics
Matches: 75, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
68 42 0.56
69 33 0.44
ACGTcount: A:0.58, C:0.04, G:0.09, T:0.29
Consensus pattern (67 bp):
AAGTAAAAGAATAATAAATAAATAATACATAAAACAAATGTAAACAATATTAATTTAAACATTTG
AA
Found at i:6164303 original size:143 final size:143
Alignment explanation
Indices: 6164076--6164915 Score: 1063
Period size: 143 Copynumber: 5.9 Consensus size: 143
6164066 GGTTTGCAAA
* * * **
6164076 TTGTAGCTTTAATATGTTCCACAGTAACGTTAGGGAAATAAGATTCGC--TCTTCAGTCTGCTCC
1 TTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCC
* * * * *
6164139 ACTGCAATTTCAGGGAGATAAGGCTGGTGGCTTCAATTTGCTCCACTACAACTTCAGAAAGGTAA
66 GCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTACAACTTCAGGAAGATAA
*
6164204 GATCTACCATAAT
131 GATCCACCATAAT
** * * * *
6164217 TTGTAGCTTTAATCTGTTCTGCTACAATGCCAGGGAAATAACATTCGTTGTCTTCAGTCTGCTCC
1 TTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCC
* * * * *
6164282 GCTGCAACTTCAGGGAAATAAGGCTGGTGACTTCAATCTACTCCACTGCAACTTCAGGAAGATAT
66 GCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTACAACTTCAGGAAGATAA
*
6164347 GATCCGCCATAAT
131 GATCCACCATAAT
* * *
6164360 TTGTAGCTTTAATTTGTTCCACTGCAACGCCAGGGAGATAAGATTCGTTGTCTTCAGTCTGCTCC
1 TTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCC
* * * *
6164425 GCTGCAACTTTAGGGAGATAAGTCTGGTGGCTTCAATTTGCTCCACTACAACTTCAGAAAGATAA
66 GCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTACAACTTCAGGAAGATAA
6164490 GATCCACCATAAT
131 GATCCACCATAAT
* * * * * *
6164503 TTGTAGCTTTAAACTGTTCCACTACAACGCTAGGGAAATTAGATTCACTGTCTTCAGTTTGCTCC
1 TTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCC
* * * * * * *
6164568 GCAGCAACTTTAGGGAGATAAGGCCGGTGGCTTCAATCTACTCCATTGCAAATTCAGGAAGATAA
66 GCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTACAACTTCAGGAAGATAA
*
6164633 GATCCACCGTAAT
131 GATCCACCATAAT
* * * * * * * *
6164646 TTTTAGCTTTAATCTCTTCCACTGTAACGCTAGGGAAATAAGATCCGCTATCTTCAGTCTACTTC
1 TTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCC
* * * * *
6164711 GCTGTAACTTCAGGGAGATAAGGTTGGTGGCTTTAATCTGCTCCACTGCAGCTTCAGGAAGATAA
66 GCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTACAACTTCAGGAAGATAA
6164776 GATCCACCATAAT
131 GATCCACCATAAT
* ** * * *
6164789 TTGTAACTTTAATCTGTTCCACTGCAACGTGAAGGAAATAAGATTTGCTATCTTCAGTCTGCTCC
1 TTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCC
* * * *
6164854 ACTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATTTGCTCCACTACAACTTCAAGAAGA
66 GCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTACAACTTCAGGAAGA
6164916 AAATATCTTC
Statistics
Matches: 595, Mismatches: 102, Indels: 2
0.85 0.15 0.00
Matches are distributed among these distances:
141 37 0.06
143 558 0.94
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (143 bp):
TTGTAGCTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCC
GCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTACAACTTCAGGAAGATAA
GATCCACCATAAT
Found at i:6166297 original size:23 final size:20
Alignment explanation
Indices: 6166271--6166318 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 20
6166261 TAGTAGAGGT
6166271 TTTTATTTTTTTGCTTTTTGTTG
1 TTTT-TTTTTTT--TTTTTGTTG
*
6166294 TTTTTTTTTTTTTTTTTTTG
1 TTTTTTTTTTTTTTTTGTTG
6166314 TTTTT
1 TTTTT
6166319 GTCCTCTACT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 13 0.54
22 7 0.29
23 4 0.17
ACGTcount: A:0.02, C:0.02, G:0.08, T:0.88
Consensus pattern (20 bp):
TTTTTTTTTTTTTTTTGTTG
Found at i:6169345 original size:20 final size:23
Alignment explanation
Indices: 6169306--6169349 Score: 67
Period size: 20 Copynumber: 2.0 Consensus size: 23
6169296 GTAAATCATG
6169306 TTATTCTTAGATTATTGAATGTT
1 TTATTCTTAGATTATTGAATGTT
6169329 TTATTCTTA-A-T-TTGAATGTT
1 TTATTCTTAGATTATTGAATGTT
6169349 T
1 T
6169350 AAAACTGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 10 0.48
21 1 0.05
22 1 0.05
23 9 0.43
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (23 bp):
TTATTCTTAGATTATTGAATGTT
Found at i:6175148 original size:168 final size:168
Alignment explanation
Indices: 6174865--6175206 Score: 585
Period size: 168 Copynumber: 2.0 Consensus size: 168
6174855 TGAAGTCGAT
* ** * * *
6174865 AAAGTAAAGGTGGATTTAATTGAAAGATTACCAGCCCCAATTACTGTGAAAGGAGTTAGAAGTTT
1 AAAGCAAAGGTGGACGTAATTGAAAGATTACCAGCCCCAATGAATGTGAAAGGAGTCAGAAGTTT
*
6174930 CTTAGGCCATGCCGGTTTTTACCGAAGGTTTATCAAGGATTTCTCAAAAATTTCTAAGCCGCTGT
66 CTTAGGCCATGCCGGTTTTTACCGAAGGTTTATCAAGGATTTCTCAAAAATTTCTAAGCCGCTAT
*
6174995 GTTTGTTGTTAGAGAAAGATACAATGTTCAATTTCAAC
131 GTTTGTTGTTAGAGAAAGATACAATGTTCAATTTCAAA
6175033 AAAGCAAAGGTGGACGTAATTGAAAGATTACCAGCCCCAATGAATGTGAAAGGAGTCAGAAGTTT
1 AAAGCAAAGGTGGACGTAATTGAAAGATTACCAGCCCCAATGAATGTGAAAGGAGTCAGAAGTTT
* * *
6175098 CTTAGGCCATGCCGGTTTTTACCGAAGGTTTATTAAGGATTTCTCAAAAATTTCTATGCCGTTAT
66 CTTAGGCCATGCCGGTTTTTACCGAAGGTTTATCAAGGATTTCTCAAAAATTTCTAAGCCGCTAT
6175163 GTTTGTTGTTAGAGAAAGATACAATGTTCAATTTCAAA
131 GTTTGTTGTTAGAGAAAGATACAATGTTCAATTTCAAA
6175201 AAAGCA
1 AAAGCA
6175207 TGTTTAGAAG
Statistics
Matches: 163, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
168 163 1.00
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (168 bp):
AAAGCAAAGGTGGACGTAATTGAAAGATTACCAGCCCCAATGAATGTGAAAGGAGTCAGAAGTTT
CTTAGGCCATGCCGGTTTTTACCGAAGGTTTATCAAGGATTTCTCAAAAATTTCTAAGCCGCTAT
GTTTGTTGTTAGAGAAAGATACAATGTTCAATTTCAAA
Found at i:6184425 original size:23 final size:22
Alignment explanation
Indices: 6184373--6184425 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
6184363 AAATAACAAG
*
6184373 ATAAGAAATAACATACAAAAAT
1 ATAAGAAATAACAAACAAAAAT
*
6184395 -TGCA-AAATAACACAACAAAAAT
1 AT-AAGAAATAACA-AACAAAAAT
6184417 ATAAGAAAT
1 ATAAGAAAT
6184426 TAAAGCGAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 7
0.71 0.09 0.21
Matches are distributed among these distances:
21 9 0.38
22 10 0.42
23 5 0.21
ACGTcount: A:0.66, C:0.11, G:0.06, T:0.17
Consensus pattern (22 bp):
ATAAGAAATAACAAACAAAAAT
Found at i:6184654 original size:17 final size:17
Alignment explanation
Indices: 6184634--6184682 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 17
6184624 TTAAATATCT
*
6184634 AAAATAAATAAACAAGA
1 AAAATAAATAAACAACA
* *
6184651 AAAATAAACAAACAACT
1 AAAATAAATAAACAACA
6184668 AAAATAAATAAACAA
1 AAAATAAATAAACAA
6184683 ATAAGGATGA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.76, C:0.10, G:0.02, T:0.12
Consensus pattern (17 bp):
AAAATAAATAAACAACA
Found at i:6187273 original size:27 final size:27
Alignment explanation
Indices: 6187212--6187278 Score: 66
Period size: 27 Copynumber: 2.4 Consensus size: 27
6187202 TTACCGTATA
6187212 ACATAATTGTGGAAAGTCTGTCAAGACT
1 ACATAA-TGTGGAAAGTCTGTCAAGACT
* *
6187240 ATC-TAATGTGGAAAG-CTCGTGAGGACT
1 A-CATAATGTGGAAAGTCT-GTCAAGACT
*
6187267 ACATAATATGGA
1 ACATAATGTGGA
6187279 GAAAGTCCGC
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
26 3 0.09
27 25 0.76
28 4 0.12
29 1 0.03
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.27
Consensus pattern (27 bp):
ACATAATGTGGAAAGTCTGTCAAGACT
Found at i:6190606 original size:42 final size:42
Alignment explanation
Indices: 6190537--6190664 Score: 161
Period size: 42 Copynumber: 3.1 Consensus size: 42
6190527 TCTCATAAGC
* * * *
6190537 TTCAGTT-AACTCATATGAGTTTCAGTTTAACCCTAATGGGT
1 TTCAGTTCAGCTCTTATGAGCTTCAGTTTAACCCTTATGGGT
*
6190578 TTCAGTTCAGCTCTT-TCGAGCTTCAGTTTAACCCTTCTGGGT
1 TTCAGTTCAGCTCTTAT-GAGCTTCAGTTTAACCCTTATGGGT
* * *
6190620 TTCCGTTCAGCTCTTATGAGCTTCTGTTCAACCCTTATGGGT
1 TTCAGTTCAGCTCTTATGAGCTTCAGTTTAACCCTTATGGGT
6190662 TTC
1 TTC
6190665 TGTTTAGCAC
Statistics
Matches: 75, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
41 8 0.11
42 66 0.88
43 1 0.01
ACGTcount: A:0.18, C:0.23, G:0.18, T:0.41
Consensus pattern (42 bp):
TTCAGTTCAGCTCTTATGAGCTTCAGTTTAACCCTTATGGGT
Found at i:6190656 original size:21 final size:21
Alignment explanation
Indices: 6190595--6190668 Score: 58
Period size: 21 Copynumber: 3.5 Consensus size: 21
6190585 CAGCTCTTTC
* * *
6190595 GAGCTTCAGTTTAACCCTTCT
1 GAGCTTCTGTTCAACCCTTAT
* * * * *
6190616 GGGTTTCCGTTCAGCTCTTAT
1 GAGCTTCTGTTCAACCCTTAT
6190637 GAGCTTCTGTTCAACCCTTAT
1 GAGCTTCTGTTCAACCCTTAT
* *
6190658 GGGTTTCTGTT
1 GAGCTTCTGTT
6190669 TAGCACTTAA
Statistics
Matches: 39, Mismatches: 14, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.14, C:0.24, G:0.20, T:0.42
Consensus pattern (21 bp):
GAGCTTCTGTTCAACCCTTAT
Found at i:6190677 original size:21 final size:21
Alignment explanation
Indices: 6190615--6190677 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
6190605 TTAACCCTTC
* *
6190615 TGGGTTTCCGTTCAGCTCTTA
1 TGGGTTTCTGTTCAGCACTTA
* * * *
6190636 TGAGCTTCTGTTCAACCCTTA
1 TGGGTTTCTGTTCAGCACTTA
*
6190657 TGGGTTTCTGTTTAGCACTTA
1 TGGGTTTCTGTTCAGCACTTA
6190678 AGTGCTTCTG
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.14, C:0.22, G:0.21, T:0.43
Consensus pattern (21 bp):
TGGGTTTCTGTTCAGCACTTA
Found at i:6190685 original size:42 final size:42
Alignment explanation
Indices: 6190565--6190688 Score: 140
Period size: 42 Copynumber: 3.0 Consensus size: 42
6190555 GTTTCAGTTT
* ** * *
6190565 AACCCTAATGGGTTTCAGTTCAGCTCTTTCGAGCTTCAGTTT
1 AACCCTTATGGGTTTCAGTTCAGCTCTTAAGAGCTTCTGTTC
* * *
6190607 AACCCTTCTGGGTTTCCGTTCAGCTCTTATGAGCTTCTGTTC
1 AACCCTTATGGGTTTCAGTTCAGCTCTTAAGAGCTTCTGTTC
* * * *
6190649 AACCCTTATGGGTTTCTGTTTAGCACTTAAGTGCTTCTGT
1 AACCCTTATGGGTTTCAGTTCAGCTCTTAAGAGCTTCTGT
6190689 GCAGCCTTTG
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.16, C:0.24, G:0.19, T:0.40
Consensus pattern (42 bp):
AACCCTTATGGGTTTCAGTTCAGCTCTTAAGAGCTTCTGTTC
Found at i:6191696 original size:20 final size:22
Alignment explanation
Indices: 6191667--6191708 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
6191657 ATGTCCCTTA
6191667 ATTTTAAG-AAAATTT-TTGAG
1 ATTTTAAGAAAAATTTCTTGAG
*
6191687 ATTTTGAGAAAAATTTCTTGAG
1 ATTTTAAGAAAAATTTCTTGAG
6191709 TATCCAGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 7 0.37
21 7 0.37
22 5 0.26
ACGTcount: A:0.38, C:0.02, G:0.17, T:0.43
Consensus pattern (22 bp):
ATTTTAAGAAAAATTTCTTGAG
Found at i:6192352 original size:17 final size:18
Alignment explanation
Indices: 6192325--6192358 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
6192315 TATTATAATA
*
6192325 ATAATTAAAATGAAAGAT
1 ATAATTAAAATAAAAGAT
6192343 ATAA-TAAAATAAAAGA
1 ATAATTAAAATAAAAGA
6192359 AAGTGGAGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.68, C:0.00, G:0.09, T:0.24
Consensus pattern (18 bp):
ATAATTAAAATAAAAGAT
Found at i:6192360 original size:21 final size:24
Alignment explanation
Indices: 6192318--6192361 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
6192308 TATATATTAT
6192318 TATAATAATAATTAAAATGAAAGA
1 TATAATAATAATTAAAATGAAAGA
6192342 TATAATAA-AA-TAAAA-GAAAG
1 TATAATAATAATTAAAATGAAAG
6192362 TGGAGACATG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 5 0.25
22 5 0.25
23 2 0.10
24 8 0.40
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.25
Consensus pattern (24 bp):
TATAATAATAATTAAAATGAAAGA
Found at i:6193148 original size:24 final size:24
Alignment explanation
Indices: 6193098--6193145 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
6193088 CATAATTGAA
* *
6193098 ATGAAATGGATTGATTTGTATATT
1 ATGAAATAGATTGATTTGAATATT
*
6193122 ATGAAATATATTGATTATGAATAT
1 ATGAAATAGATTGATT-TGAATAT
6193146 ATGTGTATTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.44
Consensus pattern (24 bp):
ATGAAATAGATTGATTTGAATATT
Found at i:6193601 original size:43 final size:43
Alignment explanation
Indices: 6193537--6193622 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
6193527 TATGTGATTG
6193537 ATATTGAAATGGCAAAGATGAGAAATGAATATGAGATGAGAAA
1 ATATTGAAATGGCAAAGATGAGAAATGAATATGAGATGAGAAA
* *
6193580 ATATTGAAATGGCAAATATGAGAAATGATTATGAGATGAGAAA
1 ATATTGAAATGGCAAAGATGAGAAATGAATATGAGATGAGAAA
6193623 TGAGATATGA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.50, C:0.02, G:0.24, T:0.23
Consensus pattern (43 bp):
ATATTGAAATGGCAAAGATGAGAAATGAATATGAGATGAGAAA
Found at i:6193606 original size:16 final size:16
Alignment explanation
Indices: 6193542--6193606 Score: 52
Period size: 16 Copynumber: 4.4 Consensus size: 16
6193532 GATTGATATT
*
6193542 GAAATGGCAAAGATGA
1 GAAATGGCAAATATGA
6193558 GAAAT-G--AATATGA
1 GAAATGGCAAATATGA
* *
6193571 G--ATGAGAAAATAT-T
1 GAAATG-GCAAATATGA
6193585 GAAATGGCAAATATGA
1 GAAATGGCAAATATGA
6193601 GAAATG
1 GAAATG
6193607 ATTATGAGAT
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
11 2 0.05
13 8 0.21
14 1 0.03
15 13 0.34
16 14 0.37
ACGTcount: A:0.51, C:0.03, G:0.26, T:0.20
Consensus pattern (16 bp):
GAAATGGCAAATATGA
Found at i:6194991 original size:49 final size:49
Alignment explanation
Indices: 6194919--6195019 Score: 175
Period size: 49 Copynumber: 2.1 Consensus size: 49
6194909 TCTAGAAGGG
* *
6194919 ATAAATAGTGATAAGAGTGTAGACAGTGGAAGACTAAGTTTAGCAATGT
1 ATAAATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGAAATGT
*
6194968 ATAAATAGTGATAAGAGTGTAGACAGTGGAATACCAAGTTTAGAAATGT
1 ATAAATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGAAATGT
6195017 ATA
1 ATA
6195020 GCATAATTTA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.43, C:0.06, G:0.25, T:0.27
Consensus pattern (49 bp):
ATAAATAGTGATAAGAGTGTAGACAGTGGAAGACCAAGTTTAGAAATGT
Found at i:6196406 original size:88 final size:89
Alignment explanation
Indices: 6196252--6196506 Score: 398
Period size: 88 Copynumber: 2.9 Consensus size: 89
6196242 GAGGGGGGGA
6196252 GGGGAAGCCGACAATTGAGGTCTCTATTGATGTTAAC---AAAAAAAAACTCATTTTTCCAGGTT
1 GGGGAAGCCGACAATTGAGG--TCTATTGATGTTAACAATAAAAAAAAACTCATTTTTCCAGGTT
6196314 GATTTTGGGACGTGGGTAAATTA-GG
64 GATTTTGGGACGTGGGTAAATTAGGG
*
6196339 GGGGAAGCCGACAATTAAGGTCTATTGATGTTAACAATAAAAAAAAACTCATTTTTCCAGGTTGA
1 GGGGAAGCCGACAATTGAGGTCTATTGATGTTAACAATAAAAAAAAACTCATTTTTCCAGGTTGA
*
6196404 TTTTAGGACGTGGGTAAATTAGGGG
66 TTTTGGGACGTGGGTAAATTA-GGG
*
6196429 GGTGGAAGCCGACAATTGAGGTCTATTGATGTTAACAAT---AAAAAACCCATTTTTCCAGGTTG
1 GG-GGAAGCCGACAATTGAGGTCTATTGATGTTAACAATAAAAAAAAACTCATTTTTCCAGGTTG
6196491 ATTTTGGGACGTGGGT
65 ATTTTGGGACGTGGGT
6196507 TTCAACATTG
Statistics
Matches: 157, Mismatches: 5, Indels: 11
0.91 0.03 0.06
Matches are distributed among these distances:
85 15 0.10
87 19 0.12
88 84 0.54
90 4 0.03
91 35 0.22
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (89 bp):
GGGGAAGCCGACAATTGAGGTCTATTGATGTTAACAATAAAAAAAAACTCATTTTTCCAGGTTGA
TTTTGGGACGTGGGTAAATTAGGG
Found at i:6197382 original size:29 final size:30
Alignment explanation
Indices: 6197348--6197433 Score: 111
Period size: 31 Copynumber: 2.9 Consensus size: 30
6197338 ATTTAATGTA
6197348 CAATTGTATACAT-AAACTTTAATTTGGTG
1 CAATTGTATACATGAAACTTTAATTTGGTG
* * *
6197377 CAATTGTACACATGAAACTCTAATTGTGGTT
1 CAATTGTATACATGAAACTTTAATT-TGGTG
* *
6197408 CAAATGTATACTTGAAACTTTAATTT
1 CAATTGTATACATGAAACTTTAATTT
6197434 TGATTTGATC
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
29 12 0.25
30 11 0.23
31 25 0.52
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (30 bp):
CAATTGTATACATGAAACTTTAATTTGGTG
Found at i:6201628 original size:19 final size:18
Alignment explanation
Indices: 6201595--6201630 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
6201585 ATTAGATTCT
6201595 ATAATTTAATTTAATTTA
1 ATAATTTAATTTAATTTA
*
6201613 ATAATTATAGTTTAATTT
1 ATAATT-TAATTTAATTT
6201631 TAAATGTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.56
Consensus pattern (18 bp):
ATAATTTAATTTAATTTA
Found at i:6222495 original size:3 final size:3
Alignment explanation
Indices: 6222487--6222521 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
6222477 TTTAGATTTC
6222487 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
6222522 AATTTTTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:6223875 original size:2 final size:2
Alignment explanation
Indices: 6223868--6223900 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
6223858 TGGATTATTT
6223868 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6223901 TATGTTATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6230720 original size:118 final size:118
Alignment explanation
Indices: 6230512--6230752 Score: 473
Period size: 118 Copynumber: 2.0 Consensus size: 118
6230502 AAATTATGAA
*
6230512 ATCATAATAGAGGACCTAGATATGGAAAAAATGTATGGTACAAGAACCTTCTATACAAATTGACC
1 ATCATAATAGAGGACCTACATATGGAAAAAATGTATGGTACAAGAACCTTCTATACAAATTGACC
6230577 AATGATTTTCCGTAGTCATTAAATTGTATAGAGAAAACTAAACTTAAATTAGC
66 AATGATTTTCCGTAGTCATTAAATTGTATAGAGAAAACTAAACTTAAATTAGC
6230630 ATCATAATAGAGGACCTACATATGGAAAAAATGTATGGTACAAGAACCTTCTATACAAATTGACC
1 ATCATAATAGAGGACCTACATATGGAAAAAATGTATGGTACAAGAACCTTCTATACAAATTGACC
6230695 AATGATTTTCCGTAGTCATTAAATTGTATAGAGAAAACTAAACTTAAATTAGC
66 AATGATTTTCCGTAGTCATTAAATTGTATAGAGAAAACTAAACTTAAATTAGC
6230748 ATCAT
1 ATCAT
6230753 TATATCCCTT
Statistics
Matches: 122, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
118 122 1.00
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (118 bp):
ATCATAATAGAGGACCTACATATGGAAAAAATGTATGGTACAAGAACCTTCTATACAAATTGACC
AATGATTTTCCGTAGTCATTAAATTGTATAGAGAAAACTAAACTTAAATTAGC
Found at i:6232118 original size:11 final size:11
Alignment explanation
Indices: 6232102--6232126 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
6232092 AATTTACGCC
6232102 GAAAAAAAAAA
1 GAAAAAAAAAA
6232113 GAAAAAAAAAA
1 GAAAAAAAAAA
6232124 GAA
1 GAA
6232127 TGAGTGGCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (11 bp):
GAAAAAAAAAA
Found at i:6232860 original size:12 final size:13
Alignment explanation
Indices: 6232838--6232862 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6232828 AAAATTCAGA
6232838 ATTAAATTTTTTT
1 ATTAAATTTTTTT
6232851 ATTAAATTTTTT
1 ATTAAATTTTTT
6232863 GATGCGACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
ATTAAATTTTTTT
Found at i:6236058 original size:42 final size:42
Alignment explanation
Indices: 6235991--6236071 Score: 135
Period size: 42 Copynumber: 1.9 Consensus size: 42
6235981 AAGCTTTTCA
* *
6235991 AAGTTGGAATCTTCATTCTATTGATGTAATCAAAGAGTTAGG
1 AAGTTGGAATCTTCATTCTAATGATGCAATCAAAGAGTTAGG
*
6236033 AAGTTGGAATCTTCATTTTAATGATGCAATCAAAGAGTT
1 AAGTTGGAATCTTCATTCTAATGATGCAATCAAAGAGTT
6236072 TGGTTTTTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.35, C:0.10, G:0.20, T:0.36
Consensus pattern (42 bp):
AAGTTGGAATCTTCATTCTAATGATGCAATCAAAGAGTTAGG
Found at i:6243010 original size:17 final size:17
Alignment explanation
Indices: 6242990--6243029 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
6242980 TATTAAATTA
6242990 TATAAGATATTAT-TTAT
1 TATAA-ATATTATCTTAT
6243007 TATAAATATTATCTTAT
1 TATAAATATTATCTTAT
6243024 TATAAA
1 TATAAA
6243030 ATAAAAATCG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 7 0.32
17 15 0.68
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (17 bp):
TATAAATATTATCTTAT
Found at i:6243325 original size:8 final size:7
Alignment explanation
Indices: 6243309--6243363 Score: 85
Period size: 7 Copynumber: 7.7 Consensus size: 7
6243299 TTTTTATTAC
6243309 ATGAAAA
1 ATGAAAA
6243316 ATGAAAAA
1 ATG-AAAA
6243324 ATGAAAAA
1 ATG-AAAA
6243332 ATGAAAA
1 ATGAAAA
6243339 ATGAAAA
1 ATGAAAA
6243346 AT-AAAA
1 ATGAAAA
6243352 ATGAAAA
1 ATGAAAA
6243359 ATGAA
1 ATGAA
6243364 TATTTAATTC
Statistics
Matches: 46, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.13
7 25 0.54
8 15 0.33
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.15
Consensus pattern (7 bp):
ATGAAAA
Done.