Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62769430
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1067035 characters in sequence are not A, C, G, or T
File 25 of 206
Found at i:7369575 original size:19 final size:18
Alignment explanation
Indices: 7369545--7369582 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
7369535 TGAGGGAAAG
7369545 AGAAAAATAAAGA-TAAA
1 AGAAAAATAAAGAGTAAA
7369562 AGAATAAATAAAAGAGTAAA
1 AGAA-AAAT-AAAGAGTAAA
7369582 A
1 A
7369583 TAATTATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.22
18 4 0.22
19 5 0.28
20 5 0.28
ACGTcount: A:0.74, C:0.00, G:0.13, T:0.13
Consensus pattern (18 bp):
AGAAAAATAAAGAGTAAA
Found at i:7372345 original size:16 final size:16
Alignment explanation
Indices: 7372307--7372353 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
7372297 ATAAAAAATG
* *
7372307 TATAAATTTATTA-AA
1 TATAAATATAATATAA
*
7372322 TATTAATATAATATAA
1 TATAAATATAATATAA
7372338 TATAAATATAAATATA
1 TATAAATAT-AATATA
7372354 TTTTTTTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
15 10 0.38
16 10 0.38
17 6 0.23
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
TATAAATATAATATAA
Found at i:7376195 original size:17 final size:17
Alignment explanation
Indices: 7376173--7376208 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
7376163 TGGCCATTAA
7376173 AATTATAATT-ATAGATT
1 AATTATAATTGATA-ATT
7376190 AATTATAATTGATAATT
1 AATTATAATTGATAATT
7376207 AA
1 AA
7376209 GTGAATTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 15 0.83
18 3 0.17
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
AATTATAATTGATAATT
Found at i:7391284 original size:24 final size:24
Alignment explanation
Indices: 7391246--7391293 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
7391236 TATTTATTAG
*
7391246 TATTTATTAGTATAATATATTTAA
1 TATTTATTAGTATAAAATATTTAA
*
7391270 TATTTATTA-TCATAAAATCTTTAA
1 TATTTATTAGT-ATAAAATATTTAA
7391294 AGCTTTAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.52
Consensus pattern (24 bp):
TATTTATTAGTATAAAATATTTAA
Found at i:7393438 original size:24 final size:24
Alignment explanation
Indices: 7393411--7393565 Score: 193
Period size: 24 Copynumber: 6.5 Consensus size: 24
7393401 AAAGACTGCT
*
7393411 GGGATGCCTCCCAACAACATGGGA
1 GGGATGCCACCCAACAACATGGGA
**
7393435 GGGATGCCACCCCGCAACATGGGA
1 GGGATGCCACCCAACAACATGGGA
* * *
7393459 GGGATGCCTCCCCAGAACATGGGA
1 GGGATGCCACCCAACAACATGGGA
* * *
7393483 GGGATGCCTCCCCAGAACATGGGA
1 GGGATGCCACCCAACAACATGGGA
7393507 GGGATGCCACCCAACAACATGGGA
1 GGGATGCCACCCAACAACATGGGA
* *
7393531 AGGATGCCACCCAACAATATGGGA
1 GGGATGCCACCCAACAACATGGGA
* *
7393555 GGAATGACACC
1 GGGATGCCACC
7393566 GAATCAAGGA
Statistics
Matches: 117, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 117 1.00
ACGTcount: A:0.30, C:0.29, G:0.30, T:0.11
Consensus pattern (24 bp):
GGGATGCCACCCAACAACATGGGA
Found at i:7404816 original size:25 final size:26
Alignment explanation
Indices: 7404786--7404836 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
7404776 TATTTTTATT
*
7404786 TTTTTA-TAATTAAATCTGAATATAA
1 TTTTTATTAATTAAATCTAAATATAA
* *
7404811 TTTTTATTATTTAAATTTAAATATAA
1 TTTTTATTAATTAAATCTAAATATAA
7404837 AATTAACTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (26 bp):
TTTTTATTAATTAAATCTAAATATAA
Found at i:7404831 original size:32 final size:32
Alignment explanation
Indices: 7404765--7404832 Score: 79
Period size: 32 Copynumber: 2.1 Consensus size: 32
7404755 AAAGTATTAA
*
7404765 AAATCTAATTATATTTTTATTTTTTTATAATT
1 AAATCTAATTATATTTTTATTTATTTATAATT
7404797 AAATCTGAA-TATAATTTTTA-TTATTTA-AATTT
1 AAATCT-AATTAT-ATTTTTATTTATTTATAA-TT
7404829 AAAT
1 AAAT
7404833 ATAAAATTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
31 2 0.06
32 21 0.66
33 9 0.28
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.56
Consensus pattern (32 bp):
AAATCTAATTATATTTTTATTTATTTATAATT
Found at i:7407982 original size:159 final size:159
Alignment explanation
Indices: 7407693--7408039 Score: 615
Period size: 159 Copynumber: 2.2 Consensus size: 159
7407683 AGTATCCGTG
* *
7407693 ATTCAATTGAGGTTGGCTTGTTGGTTGAGGATGCACCAAGCTGTTACTCTGCACTGAGTTCGTTA
1 ATTCAATTGAGGTTGGCTTGTTGGTTGAGGATGCACCAAGCTGTCACTCGGCACTGAGTTCGTTA
* *
7407758 GATCTGTTTGATTCTGACCTGGTACACTTGATTGAAATTGCCCAGTATGCTGAGAGTTCGAGTGA
66 GATCTGTTTGACTCTGACCTGCTACACTTGATTGAAATTGCCCAGTATGCTGAGAGTTCGAGTGA
7407823 TGAATCAGAGTCTGGTACTGACGTGTTTC
131 TGAATCAGAGTCTGGTACTGACGTGTTTC
7407852 ATTCAATTGAGGTTGGCTTGTTGGTTGAGGATGCACCAAGCTGTCACTCGGCACTGAGTTCGTTA
1 ATTCAATTGAGGTTGGCTTGTTGGTTGAGGATGCACCAAGCTGTCACTCGGCACTGAGTTCGTTA
* *
7407917 GATCTGTTTGACTCTGACCTGCTCCA-TTCGATTGAAATTGCCCAGTATGCTGAGAGTTTGAGTG
66 GATCTGTTTGACTCTGACCTGCTACACTT-GATTGAAATTGCCCAGTATGCTGAGAGTTCGAGTG
*
7407981 ATGAATCAGAGTCTGGTTCTGACGTGTTTC
130 ATGAATCAGAGTCTGGTACTGACGTGTTTC
7408011 ATTCAATTGAGGTTGGCTTGTTGGTTGAG
1 ATTCAATTGAGGTTGGCTTGTTGGTTGAG
7408040 TATGTTCCCT
Statistics
Matches: 180, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
158 2 0.01
159 178 0.99
ACGTcount: A:0.20, C:0.17, G:0.28, T:0.35
Consensus pattern (159 bp):
ATTCAATTGAGGTTGGCTTGTTGGTTGAGGATGCACCAAGCTGTCACTCGGCACTGAGTTCGTTA
GATCTGTTTGACTCTGACCTGCTACACTTGATTGAAATTGCCCAGTATGCTGAGAGTTCGAGTGA
TGAATCAGAGTCTGGTACTGACGTGTTTC
Found at i:7413623 original size:21 final size:22
Alignment explanation
Indices: 7413598--7413644 Score: 87
Period size: 21 Copynumber: 2.2 Consensus size: 22
7413588 ATCTAGCTTT
7413598 TTTTAGCTCACTTTCCAAGTC-
1 TTTTAGCTCACTTTCCAAGTCG
7413619 TTTTAGCTCACTTTCCAAGTCG
1 TTTTAGCTCACTTTCCAAGTCG
7413641 TTTT
1 TTTT
7413645 TTCCCCCAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.17, C:0.26, G:0.11, T:0.47
Consensus pattern (22 bp):
TTTTAGCTCACTTTCCAAGTCG
Found at i:7423114 original size:24 final size:24
Alignment explanation
Indices: 7423069--7423148 Score: 97
Period size: 24 Copynumber: 3.3 Consensus size: 24
7423059 ACCAGTCAAC
** *
7423069 CCACCATAAACAGTTGAACCTGGT
1 CCACCATAGCCAGCTGAACCTGGT
* *
7423093 CCGCCATAGCCAGCTGATCCTGGT
1 CCACCATAGCCAGCTGAACCTGGT
* *
7423117 CCACCATAGCCAGTTGAACCTTGT
1 CCACCATAGCCAGCTGAACCTGGT
7423141 CCACCATA
1 CCACCATA
7423149 CCCACCATAC
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.26, C:0.35, G:0.17, T:0.21
Consensus pattern (24 bp):
CCACCATAGCCAGCTGAACCTGGT
Found at i:7424592 original size:25 final size:25
Alignment explanation
Indices: 7424528--7424592 Score: 62
Period size: 25 Copynumber: 2.6 Consensus size: 25
7424518 TAAAGAAATA
* *
7424528 AATATATCAATTTATTTTTATATTG
1 AATATATAAATTTATTTATATATTG
* *
7424553 AATAAATATAA-TTATTTATGTATCT-
1 AATATATA-AATTTATTTATATAT-TG
7424578 AATATATAAATTTAT
1 AATATATAAATTTAT
7424593 AATGATGTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
24 2 0.06
25 27 0.84
26 3 0.09
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (25 bp):
AATATATAAATTTATTTATATATTG
Found at i:7429380 original size:22 final size:22
Alignment explanation
Indices: 7429355--7429399 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
7429345 AAAAAAATAA
7429355 GAAAATAACAGCAAAACAGTGG
1 GAAAATAACAGCAAAACAGTGG
* *
7429377 GAAAATAGCAGCAAAGCAGTGG
1 GAAAATAACAGCAAAACAGTGG
7429399 G
1 G
7429400 GTTTTTTTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.13, G:0.29, T:0.09
Consensus pattern (22 bp):
GAAAATAACAGCAAAACAGTGG
Found at i:7435960 original size:17 final size:17
Alignment explanation
Indices: 7435924--7435956 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
7435914 ATTTAAATGA
7435924 AACTGCATACATATTAC
1 AACTGCATACATATTAC
*
7435941 AACT-CATACGTATTAC
1 AACTGCATACATATTAC
7435957 CAACAACAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.39, C:0.24, G:0.06, T:0.30
Consensus pattern (17 bp):
AACTGCATACATATTAC
Found at i:7438021 original size:20 final size:20
Alignment explanation
Indices: 7437998--7438045 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
7437988 AGAGATTTAA
7437998 TTAAAAATTTCAAA-AA-ACTT
1 TTAAAAATTT-AAAGAAGA-TT
*
7438018 TTAAAAAATTAAAGAAGATT
1 TTAAAAATTTAAAGAAGATT
7438038 TTAAAAAT
1 TTAAAAAT
7438046 GTTTAGAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 3 0.12
20 20 0.83
21 1 0.04
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (20 bp):
TTAAAAATTTAAAGAAGATT
Found at i:7440713 original size:40 final size:40
Alignment explanation
Indices: 7440669--7440747 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
7440659 CTAATTTATA
7440669 CTCTATTTTCTGAGCAAGAAGACTATCCTTTTATCTTGAT
1 CTCTATTTTCTGAGCAAGAAGACTATCCTTTTATCTTGAT
7440709 CTCTATTTTCTGAGCAAGAAGACTATCCTTTTATCTTGA
1 CTCTATTTTCTGAGCAAGAAGACTATCCTTTTATCTTGA
7440748 CCTTTATTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.25, C:0.20, G:0.13, T:0.42
Consensus pattern (40 bp):
CTCTATTTTCTGAGCAAGAAGACTATCCTTTTATCTTGAT
Found at i:7440962 original size:15 final size:16
Alignment explanation
Indices: 7440942--7440973 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
7440932 TACTAGATAG
7440942 ATATGAAATAA-TATA
1 ATATGAAATAAGTATA
7440957 ATATGAAATAAGTATA
1 ATATGAAATAAGTATA
7440973 A
1 A
7440974 AGTTTAAGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (16 bp):
ATATGAAATAAGTATA
Found at i:7445180 original size:21 final size:22
Alignment explanation
Indices: 7445147--7445188 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
7445137 GATGAGGGTA
*
7445147 AAAAAATTGTATAAT-AAAATTT
1 AAAAAATTATAT-ATGAAAATTT
7445169 AAAAAA-TATATATGAAAATT
1 AAAAAATTATATATGAAAATT
7445189 AAATGTAGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
20 2 0.11
21 10 0.56
22 6 0.33
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (22 bp):
AAAAAATTATATATGAAAATTT
Found at i:7445788 original size:21 final size:22
Alignment explanation
Indices: 7445749--7445789 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
7445739 CAATTTTTTT
*
7445749 CATTTTTAATTATTGATTTAAG
1 CATTTTAAATTATTGATTTAAG
*
7445771 CATTTTAAATT-TTTATTTA
1 CATTTTAAATTATTGATTTA
7445790 TGTTTTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (22 bp):
CATTTTAAATTATTGATTTAAG
Found at i:7448034 original size:13 final size:14
Alignment explanation
Indices: 7448008--7448036 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
7447998 ATTAATTAAA
7448008 AATTAAAATTAACT
1 AATTAAAATTAACT
7448022 AATT-AAATTAACT
1 AATTAAAATTAACT
7448035 AA
1 AA
7448037 AGAAAGAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAAATTAACT
Found at i:7462955 original size:21 final size:21
Alignment explanation
Indices: 7462929--7462994 Score: 78
Period size: 21 Copynumber: 3.1 Consensus size: 21
7462919 TACATGACCA
7462929 TGTGAAGGCCACACACGCCCG
1 TGTGAAGGCCACACACGCCCG
* *
7462950 TGTGAAGGCCACACATGCGCG
1 TGTGAAGGCCACACACGCCCG
* ***
7462971 TGTGGAGGGGTCACACGCCCG
1 TGTGAAGGCCACACACGCCCG
7462992 TGT
1 TGT
7462995 AAACAGCTCG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.20, C:0.30, G:0.35, T:0.15
Consensus pattern (21 bp):
TGTGAAGGCCACACACGCCCG
Found at i:7470612 original size:22 final size:22
Alignment explanation
Indices: 7470567--7470613 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
7470557 AGTCGATAGT
* *
7470567 TTTTGTAAATATTGAAGCTGAA
1 TTTTGTAAATATTGAAGATAAA
* *
7470589 TTTTGTAACTATTGAGGATAAA
1 TTTTGTAAATATTGAAGATAAA
7470611 TTT
1 TTT
7470614 ATTAAAGTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.04, G:0.17, T:0.45
Consensus pattern (22 bp):
TTTTGTAAATATTGAAGATAAA
Found at i:7472643 original size:22 final size:22
Alignment explanation
Indices: 7472612--7472653 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
7472602 TTAGGGTGGT
7472612 GGTATAAATTCAAAAATAAAAG
1 GGTATAAATTCAAAAATAAAAG
* **
7472634 GGTATTAATTTTAAAATAAA
1 GGTATAAATTCAAAAATAAA
7472654 TTGGAAATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.55, C:0.02, G:0.12, T:0.31
Consensus pattern (22 bp):
GGTATAAATTCAAAAATAAAAG
Found at i:7473110 original size:21 final size:21
Alignment explanation
Indices: 7473053--7473110 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
7473043 TGGGTGGATG
* * *
7473053 AGCTCTTATGAGCTTCTGTTC
1 AGCTCTTACGAACTTCTATTC
*
7473074 AGCTCTTACAAACTTCTATTC
1 AGCTCTTACGAACTTCTATTC
*
7473095 AGCTCTTACGACCTTC
1 AGCTCTTACGAACTTC
7473111 AGTTTAGCTT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.21, C:0.29, G:0.12, T:0.38
Consensus pattern (21 bp):
AGCTCTTACGAACTTCTATTC
Found at i:7473119 original size:21 final size:21
Alignment explanation
Indices: 7473053--7473119 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
7473043 TGGGTGGATG
* * *
7473053 AGCTCTTATGAGCTTCTGTTC
1 AGCTCTTACGAACTTCAGTTC
*
7473074 AGCTCTTACAAACTTCTA-TTC
1 AGCTCTTACGAACTTC-AGTTC
* *
7473095 AGCTCTTACGACCTTCAGTTT
1 AGCTCTTACGAACTTCAGTTC
7473116 AGCT
1 AGCT
7473120 TTCAAGCTTC
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
20 1 0.03
21 36 0.97
ACGTcount: A:0.21, C:0.27, G:0.13, T:0.39
Consensus pattern (21 bp):
AGCTCTTACGAACTTCAGTTC
Found at i:7488438 original size:18 final size:19
Alignment explanation
Indices: 7488374--7488460 Score: 70
Period size: 19 Copynumber: 4.3 Consensus size: 19
7488364 TTTTTTATAT
*
7488374 ATTTTTAGAATT-TTTTAGA
1 ATTTTTAAAATTATTTT-GA
7488393 ATTTTTAAAAATATAAATTTTGAA
1 ATTTTT-AAAAT-T--ATTTTG-A
*
7488417 AATTTTATAAA-TATTTTGA
1 ATTTTTA-AAATTATTTTGA
*
7488436 ATTTTTAAAATTATTTTGT
1 ATTTTTAAAATTATTTTGA
7488455 ATTTTT
1 ATTTTT
7488461 TGTTGAGAGA
Statistics
Matches: 56, Mismatches: 4, Indels: 16
0.74 0.05 0.21
Matches are distributed among these distances:
18 3 0.05
19 26 0.46
20 10 0.18
21 1 0.02
22 1 0.02
23 2 0.04
24 13 0.23
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (19 bp):
ATTTTTAAAATTATTTTGA
Found at i:7488910 original size:59 final size:59
Alignment explanation
Indices: 7488839--7488952 Score: 219
Period size: 59 Copynumber: 1.9 Consensus size: 59
7488829 AACTTCAAGC
*
7488839 AAGCTCTTGTAACCTAATTTAGGTTAACTATACAATATAAATAGGATATTTTGAGGTTG
1 AAGCTCTTGTAACCTAATGTAGGTTAACTATACAATATAAATAGGATATTTTGAGGTTG
7488898 AAGCTCTTGTAACCTAATGTAGGTTAACTATACAATATAAATAGGATATTTTGAG
1 AAGCTCTTGTAACCTAATGTAGGTTAACTATACAATATAAATAGGATATTTTGAG
7488953 AGAGAGTGAG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.36
Consensus pattern (59 bp):
AAGCTCTTGTAACCTAATGTAGGTTAACTATACAATATAAATAGGATATTTTGAGGTTG
Found at i:7492821 original size:20 final size:21
Alignment explanation
Indices: 7492755--7492826 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 21
7492745 AGTCTAAATG
7492755 TTTAAAAAATATATATATGAAA
1 TTTAAAAAATATA-ATATGAAA
*
7492777 TTTAAAAAAATCCTAATAGTG---
1 TTT-AAAAAAT-ATAATA-TGAAA
7492798 TTTAAAAAATATAA-ATGAAA
1 TTTAAAAAATATAATATGAAA
7492818 TTTAAAAAA
1 TTTAAAAAA
7492827 ATCCTAACAT
Statistics
Matches: 42, Mismatches: 2, Indels: 14
0.72 0.03 0.24
Matches are distributed among these distances:
17 2 0.05
18 1 0.02
19 3 0.07
20 16 0.38
21 3 0.07
22 3 0.07
23 10 0.24
24 4 0.10
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33
Consensus pattern (21 bp):
TTTAAAAAATATAATATGAAA
Found at i:7492821 original size:41 final size:43
Alignment explanation
Indices: 7492753--7492833 Score: 148
Period size: 41 Copynumber: 1.9 Consensus size: 43
7492743 AAAGTCTAAA
7492753 TGTTTAAAAAATATATATATGAAATTTAAAAAAATCCTAATAG
1 TGTTTAAAAAATATATATATGAAATTTAAAAAAATCCTAATAG
7492796 TGTTTAAAAAATATA-A-ATGAAATTTAAAAAAATCCTAA
1 TGTTTAAAAAATATATATATGAAATTTAAAAAAATCCTAA
7492834 CATTATTAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
41 22 0.58
42 1 0.03
43 15 0.39
ACGTcount: A:0.56, C:0.05, G:0.06, T:0.33
Consensus pattern (43 bp):
TGTTTAAAAAATATATATATGAAATTTAAAAAAATCCTAATAG
Found at i:7492825 original size:21 final size:21
Alignment explanation
Indices: 7492755--7492828 Score: 66
Period size: 21 Copynumber: 3.5 Consensus size: 21
7492745 AGTCTAAATG
*
7492755 TTTAAAAAATATATATATGAAA
1 TTTAAAAAA-ATATAAATGAAA
*
7492777 TTTAAAAAAATCCTAATAGTG---
1 TTTAAAAAAAT-ATAA-A-TGAAA
7492798 TTT-AAAAAATATAAATGAAA
1 TTTAAAAAAATATAAATGAAA
7492818 TTTAAAAAAAT
1 TTTAAAAAAAT
7492829 CCTAACATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 15
0.70 0.05 0.25
Matches are distributed among these distances:
17 2 0.05
18 1 0.02
19 3 0.07
20 10 0.24
21 12 0.29
22 11 0.26
23 1 0.02
24 2 0.05
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (21 bp):
TTTAAAAAAATATAAATGAAA
Found at i:7495894 original size:15 final size:15
Alignment explanation
Indices: 7495871--7495913 Score: 77
Period size: 15 Copynumber: 2.9 Consensus size: 15
7495861 TGTTCATCCC
*
7495871 ATACCCAATTCATGA
1 ATACACAATTCATGA
7495886 ATACACAATTCATGA
1 ATACACAATTCATGA
7495901 ATACACAATTCAT
1 ATACACAATTCAT
7495914 ATGTCTCAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.44, C:0.23, G:0.05, T:0.28
Consensus pattern (15 bp):
ATACACAATTCATGA
Found at i:7495936 original size:12 final size:14
Alignment explanation
Indices: 7495906--7495938 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
7495896 CATGAATACA
7495906 CAATTCATATGTCT
1 CAATTCATATGTCT
7495920 CAATTCATAT-T-T
1 CAATTCATATGTCT
7495932 CAATTCA
1 CAATTCA
7495939 CTGCACCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.42
13 1 0.05
14 10 0.53
ACGTcount: A:0.33, C:0.21, G:0.03, T:0.42
Consensus pattern (14 bp):
CAATTCATATGTCT
Found at i:7496403 original size:24 final size:24
Alignment explanation
Indices: 7496358--7496404 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
7496348 TATATATACC
7496358 AATTCAATCAATATAAATTCAATA
1 AATTCAATCAATATAAATTCAATA
7496382 AATTC-ATCACATAGTAAA-TCAAT
1 AATTCAATCA-ATA-TAAATTCAAT
7496405 CCATTTCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.51, C:0.15, G:0.02, T:0.32
Consensus pattern (24 bp):
AATTCAATCAATATAAATTCAATA
Found at i:7497157 original size:13 final size:13
Alignment explanation
Indices: 7497120--7497158 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
7497110 GACTACTGTT
*
7497120 TTTTAATTTTAATA
1 TTTT-ATTTTATTA
*
7497134 TGTTATTTTATTA
1 TTTTATTTTATTA
7497147 TTTTATTTTATT
1 TTTTATTTTATT
7497159 TTATTTCTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 19 0.86
14 3 0.14
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (13 bp):
TTTTATTTTATTA
Found at i:7497973 original size:23 final size:24
Alignment explanation
Indices: 7497926--7497992 Score: 73
Period size: 26 Copynumber: 2.7 Consensus size: 24
7497916 ACTAATTAGG
*
7497926 TTATTATTATTATTTTT-TTTTTTT
1 TTATTATTA-TATTTTTGTTTTATT
*
7497950 TCTTTGTATATATATTTTTGTTTTATT
1 T-TAT-TAT-TATATTTTTGTTTTATT
7497977 TTATTATTATATTTTT
1 TTATTATTATATTTTT
7497993 ACTCTTCTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
24 10 0.28
25 5 0.14
26 12 0.33
27 9 0.25
ACGTcount: A:0.19, C:0.01, G:0.03, T:0.76
Consensus pattern (24 bp):
TTATTATTATATTTTTGTTTTATT
Found at i:7498033 original size:21 final size:21
Alignment explanation
Indices: 7498009--7498050 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
7497999 CTTAAGTACA
7498009 TAGTTATTTAATGATTTTTAG
1 TAGTTATTTAATGATTTTTAG
7498030 TAGTTATTTAATGATTTTTAG
1 TAGTTATTTAATGATTTTTAG
7498051 CATTTAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (21 bp):
TAGTTATTTAATGATTTTTAG
Found at i:7498100 original size:16 final size:16
Alignment explanation
Indices: 7498081--7498129 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
7498071 TTTTATCGTA
7498081 TTTCTTATTTATTTAT
1 TTTCTTATTTATTTAT
7498097 TTTCTT-TATTA-TTAT
1 TTTCTTAT-TTATTTAT
*
7498112 TTTACTTA-ATATTTAT
1 TTT-CTTATTTATTTAT
7498128 TT
1 TT
7498130 ATTTATGTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
15 10 0.36
16 18 0.64
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTCTTATTTATTTAT
Found at i:7498572 original size:72 final size:72
Alignment explanation
Indices: 7498455--7498597 Score: 234
Period size: 72 Copynumber: 2.0 Consensus size: 72
7498445 TCTTTTCAAA
* *
7498455 CTCAAGTTTTAAACAATCTCTGAAATTAAAAAGAGATCGTGTCCTAACTTACTGGGCGTGATCCC
1 CTCAAGTTTTAAACAATCTCGGAAATTAAAAAGAGATCGTGTCCTAACTTACTGGGCATGATCCC
7498520 TTTTTTC
66 TTTTTTC
**
7498527 CTCAAGTTTTAAATGATCTCGGAAATTAAGAAA-AGATCGTGTCCTAACTTACTGGGCATGATCC
1 CTCAAGTTTTAAACAATCTCGGAAATTAA-AAAGAGATCGTGTCCTAACTTACTGGGCATGATCC
7498591 CTTTTTT
65 CTTTTTT
7498598 TTAATCCGAG
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
72 63 0.95
73 3 0.05
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (72 bp):
CTCAAGTTTTAAACAATCTCGGAAATTAAAAAGAGATCGTGTCCTAACTTACTGGGCATGATCCC
TTTTTTC
Found at i:7499252 original size:18 final size:19
Alignment explanation
Indices: 7499226--7499261 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
7499216 TAAACTAAAT
*
7499226 TTAACTCCCT-AATTTCAC
1 TTAAATCCCTAAATTTCAC
7499244 TTAAATCCCTAAATTTCA
1 TTAAATCCCTAAATTTCA
7499262 AAATTTTCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.33, C:0.28, G:0.00, T:0.39
Consensus pattern (19 bp):
TTAAATCCCTAAATTTCAC
Found at i:7499631 original size:5 final size:5
Alignment explanation
Indices: 7499621--7499664 Score: 88
Period size: 5 Copynumber: 8.8 Consensus size: 5
7499611 TTTGTTTTAT
7499621 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA
7499665 CTTAATTCTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:7507841 original size:20 final size:20
Alignment explanation
Indices: 7507816--7507859 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
7507806 ATTAACTAAT
7507816 TTTTAAAAAT-TAAAAAATTA
1 TTTT-AAAATGTAAAAAATTA
*
7507836 TTTTAATATGTAAAAAATTA
1 TTTTAAAATGTAAAAAATTA
7507856 TTTT
1 TTTT
7507860 TTATATTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
TTTTAAAATGTAAAAAATTA
Found at i:7509581 original size:22 final size:21
Alignment explanation
Indices: 7509546--7509679 Score: 77
Period size: 19 Copynumber: 6.7 Consensus size: 21
7509536 AAAGGGTATC
* *
7509546 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
7509567 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
7509590 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
7509609 TATATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
7509628 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* * *
7509647 TATATAT--TATATCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
7509666 TGCATATCATATCT
1 TACAAATCATATCT
7509680 AAGATTGCAT
Statistics
Matches: 94, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
17 2 0.02
19 60 0.64
21 7 0.07
22 15 0.16
23 10 0.11
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.39
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:7509589 original size:23 final size:22
Alignment explanation
Indices: 7509546--7509603 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
7509536 AAAGGGTATC
* *
7509546 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
7509567 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
7509590 TGCATATCATATCT
1 TACAAATCATATCT
7509604 AAGATTATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:7509606 original size:19 final size:19
Alignment explanation
Indices: 7509582--7509692 Score: 177
Period size: 19 Copynumber: 5.8 Consensus size: 19
7509572 AATCATATCT
7509582 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
7509601 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
7509620 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
7509639 TCTAAGATTATATATTATA
1 TCTAAGATTGCATATCATA
7509658 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
7509677 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
7509693 CCTGAAGATT
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 82 1.00
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:7509629 original size:38 final size:38
Alignment explanation
Indices: 7509582--7509685 Score: 199
Period size: 38 Copynumber: 2.7 Consensus size: 38
7509572 AATCATATCT
7509582 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
*
7509620 TCTAAGATTGCATATCATATCTAAGATTATATATTATA
1 TCTAAGATTGCATATCATATCTAAGATTATATATCATA
7509658 TCTAAGATTGCATATCATATCTAAGATT
1 TCTAAGATTGCATATCATATCTAAGATT
7509686 GCATATCCCT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 65 1.00
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.40
Consensus pattern (38 bp):
TCTAAGATTGCATATCATATCTAAGATTATATATCATA
Found at i:7513459 original size:98 final size:98
Alignment explanation
Indices: 7513285--7513481 Score: 342
Period size: 98 Copynumber: 2.0 Consensus size: 98
7513275 ATACAATAAA
*
7513285 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACTATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
7513350 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
* *
7513383 ACTTTAAAAGAA-AGTCCGCTTATCCAATATTTAAGAAATCACACCCAATACGTTAGGGCACAAT
1 ACTTTAAAAGAACA-TCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAAT
7513447 TCCTTTAAAATCCCAAACTCGGAATATTTCCTTT
65 TCCTTTAAAATCCCAAACTCGGAATATTTCCTTT
7513481 A
1 A
7513482 TGATTTTTAA
Statistics
Matches: 94, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
97 1 0.01
98 93 0.99
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.29
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:7514447 original size:3 final size:3
Alignment explanation
Indices: 7514434--7514471 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
7514424 TTGTATGTAC
*
7514434 ATA AAA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
7514472 GATGATGAGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:7514728 original size:13 final size:13
Alignment explanation
Indices: 7514709--7514738 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
7514699 TGCAGCATAG
7514709 AAAAAAAAGAAAAC
1 AAAAAAAA-AAAAC
7514723 AAAAAAAAAAAAC
1 AAAAAAAAAAAAC
7514736 AAA
1 AAA
7514739 GGCTCTCTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.90, C:0.07, G:0.03, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAAAC
Found at i:7521749 original size:10 final size:10
Alignment explanation
Indices: 7521736--7521760 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7521726 AAATTATAAA
7521736 AAAAACTTAT
1 AAAAACTTAT
7521746 AAAAACTTAT
1 AAAAACTTAT
7521756 AAAAA
1 AAAAA
7521761 AATCTAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (10 bp):
AAAAACTTAT
Found at i:7521775 original size:20 final size:22
Alignment explanation
Indices: 7521716--7521780 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
7521706 AAGTAGATAT
*
7521716 AAACTTATTAAAATTATAAAAA
1 AAACTTATAAAAATTATAAAAA
7521738 AAACTTATAAAAACTTATAAAAA
1 AAACTTATAAAAA-TTATAAAAA
* *
7521761 AATC-TA-ATAAATTATAAAAA
1 AAACTTATAAAAATTATAAAAA
7521781 TCCTAAAATT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
20 9 0.23
21 4 0.10
22 14 0.36
23 12 0.31
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (22 bp):
AAACTTATAAAAATTATAAAAA
Found at i:7522391 original size:9 final size:9
Alignment explanation
Indices: 7522379--7522597 Score: 94
Period size: 10 Copynumber: 23.8 Consensus size: 9
7522369 CTTTTAACAT
7522379 TTTTTATAA
1 TTTTTATAA
7522388 TTTTTATTAA
1 TTTTTA-TAA
*
7522398 TTTTATAGAA
1 TTTT-TATAA
* *
7522408 TTTTAATACG
1 TTTTTATA-A
**
7522418 TACTTATAAA
1 TTTTTAT-AA
*
7522428 ATTTTA-AA
1 TTTTTATAA
*
7522436 TATTTTAAATA
1 T-TTTTATA-A
*
7522447 TGTTTTTTAA
1 T-TTTTATAA
7522457 -TTTTAT-A
1 TTTTTATAA
7522464 TTTTTATAA
1 TTTTTATAA
*
7522473 TTTATTAGAA
1 TTT-TTATAA
7522483 TTTTTAT-A
1 TTTTTATAA
7522491 TTTTTATAA
1 TTTTTATAA
* *
7522500 TATTTATAG
1 TTTTTATAA
*
7522509 TAGTTTATAA
1 T-TTTTATAA
*
7522519 TATTTATAAA
1 TTTTTAT-AA
*
7522529 TTTATATCAA
1 TTTTTAT-AA
*
7522539 TTTTCAT-A
1 TTTTTATAA
7522547 -TTTT-TAA
1 TTTTTATAA
* *
7522554 TATATAATAA
1 T-TTTTATAA
7522564 TTTTTA-AA
1 TTTTTATAA
*
7522572 ATTTTATAA
1 TTTTTATAA
*
7522581 TTTTTAATCA
1 TTTTT-ATAA
7522591 TTTTTAT
1 TTTTTAT
7522598 GTGAAAAATA
Statistics
Matches: 155, Mismatches: 36, Indels: 38
0.68 0.16 0.17
Matches are distributed among these distances:
6 1 0.01
7 5 0.03
8 29 0.19
9 47 0.30
10 63 0.41
11 10 0.06
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.58
Consensus pattern (9 bp):
TTTTTATAA
Found at i:7522401 original size:19 final size:18
Alignment explanation
Indices: 7522379--7522597 Score: 94
Period size: 19 Copynumber: 11.9 Consensus size: 18
7522369 CTTTTAACAT
7522379 TTTTTATAATTTTTATTAA
1 TTTTTATAATTTTTA-TAA
* * *
7522398 TTTTATAGAATTTTAATACG
1 TTTT-TATAATTTTTATA-A
** *
7522418 TACTTATAAAATTTTA-AA
1 TTTTTAT-AATTTTTATAA
* *
7522436 TATTTTAAATATGTTTTTTAA
1 T-TTTTATA-AT-TTTTATAA
7522457 -TTTTAT-ATTTTTATAA
1 TTTTTATAATTTTTATAA
*
7522473 TTTATTAGAATTTTTAT-A
1 TTT-TTATAATTTTTATAA
* *
7522491 TTTTTATAATATTTATAG
1 TTTTTATAATTTTTATAA
* *
7522509 TAGTTTATAATATTTATAAA
1 T-TTTTATAATTTTTAT-AA
* *
7522529 TTTATATCAATTTTCAT-A
1 TTTTTAT-AATTTTTATAA
* *
7522547 -TTTT-TAATATATAATAA
1 TTTTTATAAT-TTTTATAA
*
7522564 TTTTTA-AAATTTTATAA
1 TTTTTATAATTTTTATAA
*
7522581 TTTTTAATCATTTTTAT
1 TTTTT-ATAATTTTTAT
7522598 GTGAAAAATA
Statistics
Matches: 146, Mismatches: 34, Indels: 40
0.66 0.15 0.18
Matches are distributed among these distances:
15 3 0.02
16 12 0.08
17 30 0.21
18 18 0.12
19 51 0.35
20 30 0.21
21 2 0.01
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.58
Consensus pattern (18 bp):
TTTTTATAATTTTTATAA
Found at i:7522515 original size:27 final size:27
Alignment explanation
Indices: 7522458--7522552 Score: 88
Period size: 27 Copynumber: 3.4 Consensus size: 27
7522448 GTTTTTTAAT
*
7522458 TTTATATTTTTAT-AATTTATTAGAATT
1 TTTATATTTTTATAAATTTA-TAGAATG
*
7522485 TTTATATTTTTATAATATTTATAGTA-G
1 TTTATATTTTTATAA-ATTTATAGAATG
* *
7522512 TTTATAATATTTATAAATTTATATCAAT-
1 TTTAT-ATTTTTATAAATTTATA-GAATG
7522540 TTTCATATTTTTA
1 TTT-ATATTTTTA
7522553 ATATATAATA
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
27 25 0.45
28 24 0.43
29 7 0.12
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.60
Consensus pattern (27 bp):
TTTATATTTTTATAAATTTATAGAATG
Found at i:7522517 original size:10 final size:9
Alignment explanation
Indices: 7522454--7522586 Score: 64
Period size: 9 Copynumber: 15.0 Consensus size: 9
7522444 ATATGTTTTT
7522454 TAAT-TTTA
1 TAATATTTA
*
7522462 T-ATTTTTA
1 TAATATTTA
*
7522470 TAATTTATTA
1 TAATAT-TTA
* *
7522480 GAATTTTTA
1 TAATATTTA
*
7522489 T-ATTTTTA
1 TAATATTTA
7522497 TAATATTTA
1 TAATATTTA
*
7522506 TAGTAGTTTA
1 TAATA-TTTA
7522516 TAATATTTA
1 TAATATTTA
7522525 TAA-ATTTA
1 TAATATTTA
7522533 T-ATCAATTT-
1 TAAT--ATTTA
* *
7522542 TCATATTTT
1 TAATATTTA
*
7522551 TAATATATAA
1 TAATAT-TTA
*
7522561 TAATTTTTA
1 TAATATTTA
*
7522570 AAAT-TTTA
1 TAATATTTA
*
7522578 TAATTTTTA
1 TAATATTTA
7522587 ATCATTTTTA
Statistics
Matches: 101, Mismatches: 12, Indels: 23
0.74 0.09 0.17
Matches are distributed among these distances:
7 3 0.03
8 31 0.31
9 39 0.39
10 28 0.28
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (9 bp):
TAATATTTA
Found at i:7524641 original size:34 final size:35
Alignment explanation
Indices: 7524597--7524663 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
7524587 CAGTAAAATA
7524597 TTTTCCGTAAAATGATTT-CGGGAAAATATTTTAC
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
* **
7524631 TTTTCTGTAAAATGATTTACTTGAAAATATTTT
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTT
7524664 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
Found at i:7526975 original size:4 final size:4
Alignment explanation
Indices: 7526966--7526998 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
7526956 CTCACTCCTC
7526966 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
7526999 AAATACTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TGTA
Found at i:7527848 original size:18 final size:19
Alignment explanation
Indices: 7527812--7527858 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
7527802 TTTAAATTAA
7527812 AAATATATTCAAACCTTA-T
1 AAATAT-TTCAAACCTTATT
**
7527831 AAATATTTCAAATTTTATT
1 AAATATTTCAAACCTTATT
7527850 AAATCATTT
1 AAAT-ATTT
7527859 AAAAAAAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 9 0.38
19 11 0.46
20 4 0.17
ACGTcount: A:0.45, C:0.11, G:0.00, T:0.45
Consensus pattern (19 bp):
AAATATTTCAAACCTTATT
Found at i:7536410 original size:30 final size:31
Alignment explanation
Indices: 7536352--7536414 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 31
7536342 AAGTTTACAA
7536352 GTCCAAAATCAAACTCATGATACCACATTTTAT
1 GTCCAAAATCAAACTCATG--ACCACATTTTAT
*
7536385 GTCCAAAATCGAACTCATG-CCACATTTTAT
1 GTCCAAAATCAAACTCATGACCACATTTTAT
7536415 ATAATCTTAC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 11 0.38
33 18 0.62
ACGTcount: A:0.37, C:0.25, G:0.08, T:0.30
Consensus pattern (31 bp):
GTCCAAAATCAAACTCATGACCACATTTTAT
Found at i:7537431 original size:21 final size:21
Alignment explanation
Indices: 7537405--7537459 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
7537395 AGGGTTTAGA
*
7537405 CCGTGTGACAG-GGGTACATGG
1 CCGTGTGACAGAGGG-ACATGC
* *
7537426 CCGTGTGGCTGAGGGACATGC
1 CCGTGTGACAGAGGGACATGC
7537447 CCGTGTGAGCAGA
1 CCGTGTGA-CAGA
7537460 CTATATAACT
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
21 21 0.78
22 6 0.22
ACGTcount: A:0.18, C:0.22, G:0.42, T:0.18
Consensus pattern (21 bp):
CCGTGTGACAGAGGGACATGC
Found at i:7539046 original size:22 final size:22
Alignment explanation
Indices: 7539018--7539155 Score: 195
Period size: 22 Copynumber: 6.3 Consensus size: 22
7539008 TTTATTGTTC
*
7539018 AAACATGAGAGCTTAGTACGTG
1 AAACATGAGAGCTTAGTACGTT
7539040 AAACATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
**
7539062 AGCCATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
** * * *
7539084 AGCCATGAGGGTTTAGTTCGTT
1 AAACATGAGAGCTTAGTACGTT
7539106 AAACATGAGAGCTTAGTACGTT
1 AAACATGAGAGCTTAGTACGTT
*
7539128 AAACATGAGAGCTTAGTACGTG
1 AAACATGAGAGCTTAGTACGTT
7539150 AAACAT
1 AAACAT
7539156 CCATTGCATG
Statistics
Matches: 104, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 104 1.00
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.27
Consensus pattern (22 bp):
AAACATGAGAGCTTAGTACGTT
Found at i:7544295 original size:21 final size:18
Alignment explanation
Indices: 7544266--7544308 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 18
7544256 AATTCATATA
7544266 TATTAATATTGGCATATTTTT
1 TATTAATATT-G--TATTTTT
*
7544287 TATTCATATTGTATTTTT
1 TATTAATATTGTATTTTT
7544305 TATT
1 TATT
7544309 GTTTTTTCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 11 0.52
20 1 0.05
21 9 0.43
ACGTcount: A:0.26, C:0.05, G:0.07, T:0.63
Consensus pattern (18 bp):
TATTAATATTGTATTTTT
Found at i:7546648 original size:63 final size:63
Alignment explanation
Indices: 7546574--7546707 Score: 171
Period size: 63 Copynumber: 2.1 Consensus size: 63
7546564 TGCAAGGGTG
* *
7546574 ACACGAGTAAGACACACAGGCGTCTGTCCAGGAC-GTGTAACTAACTAAGTTCATATTAGAGTC
1 ACACGGGTAAGACACACAGGCGTCTGTCCAGG-CTGTGTAACTAACTAAGTTCATATTAGAGAC
* * * * * *
7546637 ACACGGGTAAGACACACGGGCGTGTGTCCAGGCTGTGTAACTCACTGAGTTTATATTTGAGAC
1 ACACGGGTAAGACACACAGGCGTCTGTCCAGGCTGTGTAACTAACTAAGTTCATATTAGAGAC
*
7546700 ACATGGGT
1 ACACGGGT
7546708 GTGCACCAGG
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
62 1 0.02
63 60 0.98
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (63 bp):
ACACGGGTAAGACACACAGGCGTCTGTCCAGGCTGTGTAACTAACTAAGTTCATATTAGAGAC
Found at i:7549585 original size:16 final size:17
Alignment explanation
Indices: 7549556--7549603 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 17
7549546 ACATATTTAA
**
7549556 TAATATAACAAATTA-T
1 TAATATAATTAATTATT
7549572 TAATATAATTAATTATT
1 TAATATAATTAATTATT
7549589 TCAATA-AATTAATTA
1 T-AATATAATTAATTA
7549604 ATATTAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 13 0.46
17 11 0.39
18 4 0.14
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATATAATTAATTATT
Found at i:7549707 original size:17 final size:17
Alignment explanation
Indices: 7549682--7549732 Score: 59
Period size: 17 Copynumber: 3.0 Consensus size: 17
7549672 ATTTGTATTA
* *
7549682 ATATTTTAATGATAAAT
1 ATATATTAATAATAAAT
*
7549699 ATATATTAAAAATATAA-
1 ATATATTAATAATA-AAT
7549716 ATATATTAATAATAAAT
1 ATATATTAATAATAAAT
7549733 TTTTTAGTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
16 2 0.07
17 24 0.86
18 2 0.07
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (17 bp):
ATATATTAATAATAAAT
Found at i:7549877 original size:21 final size:21
Alignment explanation
Indices: 7549853--7549892 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7549843 TTAGGTCCAA
*
7549853 TTGTTAATATTGTTAATTTTT
1 TTGTCAATATTGTTAATTTTT
* *
7549874 TTGTCAATTTTGTTGATTT
1 TTGTCAATATTGTTAATTT
7549893 GACATTTTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.20, C:0.03, G:0.12, T:0.65
Consensus pattern (21 bp):
TTGTCAATATTGTTAATTTTT
Found at i:7550911 original size:5 final size:5
Alignment explanation
Indices: 7550901--7550925 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
7550891 ACTATTTAAA
7550901 GATAT GATAT GATAT GATAT GATAT
1 GATAT GATAT GATAT GATAT GATAT
7550926 AGTAGGAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
GATAT
Found at i:7552323 original size:19 final size:19
Alignment explanation
Indices: 7552299--7552382 Score: 80
Period size: 19 Copynumber: 4.3 Consensus size: 19
7552289 AAAAATTTAC
7552299 AAATATAATTCTATTTATT
1 AAATATAATTCTATTTATT
* * *
7552318 AAATATTATTTTTATTTAATA
1 AAATA-TAATTCTATTT-ATT
* *
7552339 AAATATTATT-AATATTATT
1 AAATATAATTCTAT-TTATT
*
7552358 AAAAATAATTCTATTTATT
1 AAATATAATTCTATTTATT
7552377 AAATAT
1 AAATAT
7552383 TATTTTTATT
Statistics
Matches: 50, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
19 27 0.54
20 16 0.32
21 7 0.14
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (19 bp):
AAATATAATTCTATTTATT
Found at i:7552335 original size:20 final size:20
Alignment explanation
Indices: 7552310--7552399 Score: 94
Period size: 20 Copynumber: 4.5 Consensus size: 20
7552300 AATATAATTC
7552310 TATTTATTAAATATTATTTT
1 TATTTATTAAATATTATTTT
* **
7552330 TATTTAATAAAATATTATTAA
1 TATTT-ATTAAATATTATTTT
* * *
7552351 TA-TTATTAAA-AATAATTC
1 TATTTATTAAATATTATTTT
7552369 TATTTATTAAATATTATTTT
1 TATTTATTAAATATTATTTT
*
7552389 TATTTAATAAA
1 TATTTATTAAA
7552400 ATGTTGTTAA
Statistics
Matches: 55, Mismatches: 12, Indels: 6
0.75 0.16 0.08
Matches are distributed among these distances:
18 6 0.11
19 13 0.24
20 22 0.40
21 14 0.25
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.54
Consensus pattern (20 bp):
TATTTATTAAATATTATTTT
Found at i:7552371 original size:59 final size:60
Alignment explanation
Indices: 7552303--7552417 Score: 205
Period size: 59 Copynumber: 1.9 Consensus size: 60
7552293 ATTTACAAAT
7552303 ATAATTCTATTTATTAAATATTATTTTTATTTAATAAAATATTATTAATAT-TATTAAAA
1 ATAATTCTATTTATTAAATATTATTTTTATTTAATAAAATATTATTAATATATATTAAAA
* *
7552362 ATAATTCTATTTATTAAATATTATTTTTATTTAATAAAATGTTGTTAATATATATT
1 ATAATTCTATTTATTAAATATTATTTTTATTTAATAAAATATTATTAATATATATT
7552418 TTATATGAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
59 49 0.92
60 4 0.08
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (60 bp):
ATAATTCTATTTATTAAATATTATTTTTATTTAATAAAATATTATTAATATATATTAAAA
Found at i:7553576 original size:14 final size:13
Alignment explanation
Indices: 7553555--7553585 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
7553545 CTTTTTGTTC
7553555 TTTCTCTTTTCTT
1 TTTCTCTTTTCTT
7553568 TTTCTTCTTTTCTT
1 TTTC-TCTTTTCTT
7553582 TTTC
1 TTTC
7553586 GCCATATAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTCTCTTTTCTT
Found at i:7553585 original size:20 final size:20
Alignment explanation
Indices: 7553543--7553583 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
7553533 TCTCTTTCCC
*
7553543 TTCTTTTTGTTCTTTCTCTT
1 TTCTTTTTCTTCTTTCTCTT
7553563 TTCTTTTTCTTCTTT-TCTT
1 TTCTTTTTCTTCTTTCTCTT
7553582 TT
1 TT
7553584 TCGCCATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78
Consensus pattern (20 bp):
TTCTTTTTCTTCTTTCTCTT
Found at i:7556308 original size:15 final size:15
Alignment explanation
Indices: 7556288--7556338 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
7556278 ACAACATGAT
7556288 AACGTAAATGACTAA
1 AACGTAAATGACTAA
* *
7556303 AACGTAACAT--TTCA
1 AACGTAA-ATGACTAA
*
7556317 AACATAAATGACTAA
1 AACGTAAATGACTAA
7556332 AACGTAA
1 AACGTAA
7556339 CCTAAGGTAA
Statistics
Matches: 27, Mismatches: 6, Indels: 6
0.69 0.15 0.15
Matches are distributed among these distances:
13 2 0.07
14 8 0.30
15 15 0.56
16 2 0.07
ACGTcount: A:0.53, C:0.16, G:0.10, T:0.22
Consensus pattern (15 bp):
AACGTAAATGACTAA
Found at i:7558008 original size:20 final size:20
Alignment explanation
Indices: 7557970--7558010 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
7557960 ATTATATAAT
*
7557970 GGTTGTTATCATAAATAAAA
1 GGTTGTTATCAGAAATAAAA
7557990 GGTTGTTAT-AGAAAGTAAAA
1 GGTTGTTATCAGAAA-TAAAA
7558010 G
1 G
7558011 TAAAATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.44, C:0.02, G:0.22, T:0.32
Consensus pattern (20 bp):
GGTTGTTATCAGAAATAAAA
Found at i:7565271 original size:10 final size:10
Alignment explanation
Indices: 7565256--7565362 Score: 60
Period size: 10 Copynumber: 10.5 Consensus size: 10
7565246 CAGGAAAATA
7565256 TAAAAATTAT
1 TAAAAATTAT
7565266 TAAAAA-TAT
1 TAAAAATTAT
*
7565275 CAAAAAATTAT
1 -TAAAAATTAT
* *
7565286 T-AAATTTAA
1 TAAAAATTAT
7565295 TAAAAACTTA-
1 TAAAAA-TTAT
7565305 -AAAATATTAT
1 TAAAA-ATTAT
* *
7565315 AAAAAAATAT
1 TAAAAATTAT
* *
7565325 TTAAAATTTT
1 TAAAAATTAT
*
7565335 ATAAAAATTCT
1 -TAAAAATTAT
7565346 TAAAAACTTATT
1 TAAAAA-TTA-T
7565358 TAAAA
1 TAAAA
7565363 CTTAATTTAA
Statistics
Matches: 74, Mismatches: 13, Indels: 18
0.70 0.12 0.17
Matches are distributed among these distances:
9 17 0.23
10 31 0.42
11 20 0.27
12 6 0.08
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (10 bp):
TAAAAATTAT
Found at i:7565348 original size:20 final size:20
Alignment explanation
Indices: 7565254--7565350 Score: 76
Period size: 20 Copynumber: 4.8 Consensus size: 20
7565244 ATCAGGAAAA
*
7565254 TATAAAAATTATTAAAAATAT
1 TATAAAAATTATT-AAAATTT
*
7565275 CA-AAAAATTATT-AAATTT
1 TATAAAAATTATTAAAATTT
* *
7565293 AATAAAAACTTA--AAAATAT
1 TATAAAAA-TTATTAAAATTT
*
7565312 TATAAAAAAATATTTAAAATTT
1 TAT-AAAAATTA-TTAAAATTT
*
7565334 TATAAAAATTCTTAAAA
1 TATAAAAATTATTAAAA
7565351 ACTTATTTAA
Statistics
Matches: 60, Mismatches: 9, Indels: 15
0.71 0.11 0.18
Matches are distributed among these distances:
18 6 0.10
19 14 0.23
20 24 0.40
21 7 0.12
22 9 0.15
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (20 bp):
TATAAAAATTATTAAAATTT
Found at i:7565688 original size:2 final size:2
Alignment explanation
Indices: 7565675--7565705 Score: 53
Period size: 2 Copynumber: 15.0 Consensus size: 2
7565665 AAATTATTAT
7565675 TA TA TGA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA
7565706 CTAATTTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 26 0.93
3 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
TA
Found at i:7567164 original size:13 final size:14
Alignment explanation
Indices: 7567148--7567194 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 14
7567138 TAAATATTAA
*
7567148 ATTTTTTTATTT-T
1 ATTTTTATATTTAT
7567161 ATTTTTATATTTAT
1 ATTTTTATATTTAT
*
7567175 ATTTTTA-AATTAT
1 ATTTTTATATTTAT
*
7567188 AATTTTA
1 ATTTTTA
7567195 AGAAGTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
13 22 0.73
14 8 0.27
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
ATTTTTATATTTAT
Found at i:7568893 original size:2 final size:2
Alignment explanation
Indices: 7568886--7568916 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7568876 TTCTCAAGGT
7568886 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7568917 CATTGAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7572901 original size:24 final size:23
Alignment explanation
Indices: 7572869--7572920 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
7572859 GACTTTTTCA
* *
7572869 TTTTTCAAATATTTT-TAGTCTTT
1 TTTTTCAAAAATTTTATAAT-TTT
7572892 TTTTTCCAAAAATTTTATAATTTT
1 TTTTT-CAAAAATTTTATAATTTT
7572916 TTTTT
1 TTTTT
7572921 AAATTTTACA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 5 0.20
24 17 0.68
25 3 0.12
ACGTcount: A:0.25, C:0.08, G:0.02, T:0.65
Consensus pattern (23 bp):
TTTTTCAAAAATTTTATAATTTT
Found at i:7573836 original size:77 final size:77
Alignment explanation
Indices: 7573709--7573859 Score: 284
Period size: 77 Copynumber: 2.0 Consensus size: 77
7573699 CAAACAGTAC
* *
7573709 CTGTTGACACTATTTTTTGATGAAACCGGGGTCGACTTGGGTTTTGAAAAATGAAAATGAAAACG
1 CTGTTGACACCATTTTTTGATGAAAACGGGGTCGACTTGGGTTTTGAAAAATGAAAATGAAAACG
7573774 GGAGTCGCCTGG
66 GGAGTCGCCTGG
7573786 CTGTTGACACCATTTTTTGATGAAAACGGGGTCGACTTGGGTTTTGAAAAATGAAAATGAAAACG
1 CTGTTGACACCATTTTTTGATGAAAACGGGGTCGACTTGGGTTTTGAAAAATGAAAATGAAAACG
7573851 GGAGTCGCC
66 GGAGTCGCC
7573860 ACTGATCCTT
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
77 72 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.28
Consensus pattern (77 bp):
CTGTTGACACCATTTTTTGATGAAAACGGGGTCGACTTGGGTTTTGAAAAATGAAAATGAAAACG
GGAGTCGCCTGG
Found at i:7573852 original size:37 final size:38
Alignment explanation
Indices: 7573728--7573857 Score: 122
Period size: 37 Copynumber: 3.4 Consensus size: 38
7573718 CTATTTTTTG
*
7573728 ATGAAACCGGG-GTCGACTTGGGTTTTGAAAAATGAAA
1 ATGAAAACGGGAGTCGACTTGGGTTTTGAAAAATGAAA
* * * ** ****
7573765 ATGAAAACGGGAGTCG-CCTGGCTGTTGACACCATTTTTTG
1 ATGAAAACGGGAGTCGACTTGGGTTTTGA-A--AAATGAAA
7573805 ATGAAAACGGG-GTCGACTTGGGTTTTGAAAAATGAAA
1 ATGAAAACGGGAGTCGACTTGGGTTTTGAAAAATGAAA
7573842 ATGAAAACGGGAGTCG
1 ATGAAAACGGGAGTCG
7573858 CCACTGATCC
Statistics
Matches: 68, Mismatches: 19, Indels: 11
0.69 0.19 0.11
Matches are distributed among these distances:
37 32 0.47
38 9 0.13
39 5 0.07
40 22 0.32
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.25
Consensus pattern (38 bp):
ATGAAAACGGGAGTCGACTTGGGTTTTGAAAAATGAAA
Found at i:7574589 original size:16 final size:16
Alignment explanation
Indices: 7574568--7574606 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7574558 AATTATGGAG
* *
7574568 ATATATGAAAGCGTGT
1 ATATATAAAAGCATGT
*
7574584 ATATATAAAAGTATGT
1 ATATATAAAAGCATGT
7574600 ATATATA
1 ATATATA
7574607 TGTATACGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.46, C:0.03, G:0.15, T:0.36
Consensus pattern (16 bp):
ATATATAAAAGCATGT
Found at i:7574850 original size:13 final size:13
Alignment explanation
Indices: 7574832--7574857 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7574822 GAATCATAAA
7574832 ATATAAAATACAT
1 ATATAAAATACAT
7574845 ATATAAAATACAT
1 ATATAAAATACAT
7574858 GTTTTAAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
ATATAAAATACAT
Found at i:7575133 original size:5 final size:5
Alignment explanation
Indices: 7575123--7575150 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
7575113 ATAATTATAA
7575123 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
7575151 CAATAACAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:7576264 original size:20 final size:21
Alignment explanation
Indices: 7576241--7576287 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
7576231 TTTTTTGGGC
*
7576241 TGGGTTTTAATTTT-TCT-TTT
1 TGGGTTGTAATTTTAT-TGTTT
*
7576261 TGGGCTGTAATTTTATTGTTT
1 TGGGTTGTAATTTTATTGTTT
7576282 TGGGTT
1 TGGGTT
7576288 AGGTCTGTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.11, C:0.04, G:0.23, T:0.62
Consensus pattern (21 bp):
TGGGTTGTAATTTTATTGTTT
Found at i:7576758 original size:41 final size:43
Alignment explanation
Indices: 7576711--7577298 Score: 268
Period size: 44 Copynumber: 13.7 Consensus size: 43
7576701 ATTAACGGTC
*
7576711 TTCAATCTGCTCCACTGCATCTTCAGGGAGATAAGATT-T-GT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTGGT
* * * * * *
7576752 TACAATCTACTCTACAGTAACTTCAGAGAGATAAGATCTGTGGT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGTGGT
* * * *** *
7576796 TTTAATCCGCTCCACTACAACTTCAGGGAGATAAGA--CCAGA
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTGGT
* * * * *
7576837 TGCGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTGTGGT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGTGGT
* * * **
7576881 TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTG--TGGT
* * * * ** *
7576926 TTC-GTCTACTCCACTGTAACCTCAGGGAGATAAGA-CCT-GA
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTGGT
* * * * *
7576966 TGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGAT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGTGGT
* ** * * * * * **
7577010 TTTAATCCCCTCTACTGTAACTTAAGGGAGATAGGATTTATTTCT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TT-GTGGT
* * * * ** *
7577055 TTC-GTCTGCTCCACTGTAACCTCAGGAAGATAAGA-CCT-GA
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTGGT
* * * * * * * *
7577095 TGCTATCTACTCTACTGTAACTTTAGAGAGATAAGATCTGTGAT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGTGGT
* * * **
7577139 TTTAATCTGCTCCACTGTAACTTCAGGGAGATAGGATTGATTTCT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTG--TGGT
* *
7577184 TTC-GTCTGCTCCACTGCAACTTTAGGGAGATAAGA--GTGGAT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTGG-T
* * * * *
7577225 GT-GATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTGGT
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TGTGGT
* ** * *
7577268 TTTAATCCACTCCACTGTAACTTTAGGGAGA
1 TTCAATCTGCTCCACTGCAACTTCAGGGAGA
7577299 CAGGATTATC
Statistics
Matches: 392, Mismatches: 129, Indels: 49
0.69 0.23 0.09
Matches are distributed among these distances:
40 5 0.01
41 143 0.36
42 2 0.01
43 9 0.02
44 220 0.56
45 13 0.03
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (43 bp):
TTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGTGGT
Found at i:7576954 original size:129 final size:129
Alignment explanation
Indices: 7576804--7577305 Score: 736
Period size: 129 Copynumber: 3.9 Consensus size: 129
7576794 GTTTTAATCC
** * * * *
7576804 GCTCCACTACAACTTCAGGGAGATAAGACCAGATGCGATCTGCTCTACTACAACTTCAGAGAGAT
1 GCTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGAT
* *
7576869 AAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTTCGTCT
66 AAGATCTGTGATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTGATTTCTTTCGTCT
* *
7576933 ACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTGCTCTACTGCAACTTCAGAGAGAT
1 GCTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGAT
* * * *
7576998 AAGATCTGTGATTTTAATCCCCTCTACTGTAACTTAAGGGAGATAGGATTTATTTCTTTCGTCT
66 AAGATCTGTGATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTGATTTCTTTCGTCT
* * * *
7577062 GCTCCACTGTAACCTCAGGAAGATAAGACCTGATGCTATCTACTCTACTGTAACTTTAGAGAGAT
1 GCTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGAT
*
7577127 AAGATCTGTGATTTTAATCTGCTCCACTGTAACTTCAGGGAGATAGGATTGATTTCTTTCGTCT
66 AAGATCTGTGATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTGATTTCTTTCGTCT
* * * * *
7577191 GCTCCACTGCAACTTTAGGGAGATAAGA-GTGGATGTGATCTACTCTACTGCAACTTCAGAGAGA
1 GCTCCACTGTAACCTCAGGGAGATAAGACCT-GATGCGATCTACTCTACTGCAACTTCAGAGAGA
* * * *
7577255 TAAGATCTGTGGTTTTAATCCACTCCACTGTAACTTTAGGGAGACAGGATT
65 TAAGATCTGTGATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATT
7577306 ATCGGCTTCA
Statistics
Matches: 335, Mismatches: 37, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
128 1 0.00
129 334 1.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (129 bp):
GCTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAGAGAGAT
AAGATCTGTGATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTGATTTCTTTCGTCT
Found at i:7577381 original size:227 final size:227
Alignment explanation
Indices: 7577091--7577984 Score: 1467
Period size: 227 Copynumber: 3.9 Consensus size: 227
7577081 AAGATAAGAC
* * **
7577091 CTGATGCT-ATCTACTCTACTGTAACTTTAGAGAGATAAGATC-TGTGATTTTAATCTGCTCCAC
1 CTGATG-TGATCTACTCTACTGTAACTTCAGAGAGATAAGATCAT-TTATTTTAATCCACTCCAC
* * * *
7577154 TGTAACTTCAGGGAGATAGGATTGA-TTTCTTTCGTCTGCTCCACTGCAACTTTAGGGAGATAAG
64 TGTAACTTCAGAGAGATAGGATT-ACTTTCTTTCGTCTGCTCCACTGTAACCTCAGGGAGATAAG
* * * *
7577218 A-GTGGATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCACTCCA
128 ACCT-GATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCA
* * *
7577282 CTGTAACTTTAGGGAGACAGGATTATCGGCTTCAAT
192 CTGTAACTTCAGGGAGATAGGATTATCAGCTTCAAT
* *
7577318 CTGATGTGATCTATTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCACTCCACTA
1 CTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCACTCCACTG
7577383 TAACTTCAGAGAGATAGGATTACTTTCTTTCGTCTGCTCCACTGTAACCTCAGGGAGATAAGACC
66 TAACTTCAGAGAGATAGGATTACTTTCTTTCGTCTGCTCCACTGTAACCTCAGGGAGATAAGACC
*
7577448 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTACACTGT
131 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTGT
7577513 AACTTCAGGGAGATAGGATTATCAGCTTCAAT
196 AACTTCAGGGAGATAGGATTATCAGCTTCAAT
* *
7577545 CTGATGTGATCTACTCTACTGTAACTTCAGAGAGATTAGATCCTTTATTTTAATCCACTCCACTG
1 CTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCACTCCACTG
7577610 TAACTTCAGAGAGATAGGATTACTTTCTTTCGTCTGCTCCACTGTAACCTCAGGGAGATAAGACC
66 TAACTTCAGAGAGATAGGATTACTTTCTTTCGTCTGCTCCACTGTAACCTCAGGGAGATAAGACC
7577675 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTGT
131 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTGT
*
7577740 AACTTCAGGGAGATAGGATTATCAGTTTCAAT
196 AACTTCAGGGAGATAGGATTATCAGCTTCAAT
*
7577772 GTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAG-TCATTTATTTTAATCCACTCCACTG
1 CTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCACTCCACTG
*
7577836 TAACTTCAGAGAGATAGGATTACTTTCTTTCGTCTGCTCCACTGTAACCTCAAGGAGATAAGACC
66 TAACTTCAGAGAGATAGGATTACTTTCTTTCGTCTGCTCCACTGTAACCTCAGGGAGATAAGACC
* * *
7577901 TGATGCGATCTATTCTACTGTAACTTCAGAGAGATAAGATCCT-TTATTTTAATTCACTCCACTG
131 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGAT-CTGTGATTTTAATCCACTCCACTG
7577965 TAACTTCAGGGAGATAGGAT
195 TAACTTCAGGGAGATAGGAT
7577985 AGCGTCTTCG
Statistics
Matches: 631, Mismatches: 31, Indels: 11
0.94 0.05 0.02
Matches are distributed among these distances:
226 168 0.27
227 461 0.73
228 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (227 bp):
CTGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTAATCCACTCCACTG
TAACTTCAGAGAGATAGGATTACTTTCTTTCGTCTGCTCCACTGTAACCTCAGGGAGATAAGACC
TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTGT
AACTTCAGGGAGATAGGATTATCAGCTTCAAT
Found at i:7577402 original size:98 final size:98
Alignment explanation
Indices: 7577222--7577404 Score: 278
Period size: 98 Copynumber: 1.9 Consensus size: 98
7577212 GATAAGAGTG
* *
7577222 GATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCACTCCACTGTA
1 GATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTATA
* *
7577287 ACTTTAGGGAGACAGGATTATCGGCTTCAATCT
66 ACTTCAGAGAGACAGGATTATCGGCTTCAATCT
* * *
7577320 GATGTGATCTATTCTACTGTAACTTCAGAGAGATAAGATCAT-TTATTTTAATCCACTCCACTAT
1 GATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATC-TGTGATTTTAATCCACTCCACTAT
*
7577384 AACTTCAGAGAGATAGGATTA
65 AACTTCAGAGAGACAGGATTA
7577405 CTTTCTTTCG
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
98 75 0.99
99 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.33
Consensus pattern (98 bp):
GATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTATA
ACTTCAGAGAGACAGGATTATCGGCTTCAATCT
Found at i:7577516 original size:44 final size:43
Alignment explanation
Indices: 7577326--7578073 Score: 342
Period size: 44 Copynumber: 16.8 Consensus size: 43
7577316 ATCTGATGTG
* * *
7577326 ATCTATTCTACTGTAACTTCAGAGAGATAAGATCATTTATTTTA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATC-TTGATTTTA
* * * *
7577370 ATCCACTCCACTATAACTTCAGAGAGATAGGATTACTT--TCTTTC
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGA-T-CTTGAT-TTTA
* * * * * ***
7577414 GTCTGCTCCACTGTAACCTCAGGGAGATAAGA-CCTGA-TGCG
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTTGATTTTA
*
7577455 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-TGATTTTA
* * * * * *
7577499 ATCCACTACACTGTAACTTCAGGGAGATAGGATTATCAGCTTCAATCTGATGTG
1 ATCTACTCCACTGTAACTTCAGAGAGATA--A-GAT---CTT-GAT-T--T-TA
* * *
7577553 ATCTACTCTACTGTAACTTCAGAGAGATTAGATCCTTTATTTTA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGAT-CTTGATTTTA
* * *
7577597 ATCCACTCCACTGTAACTTCAGAGAGATAGGATTACTT--TCTTTC
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGA-T-CTTGAT-TTTA
* * * * * ***
7577641 GTCTGCTCCACTGTAACCTCAGGGAGATAAGA-CCTGA-TGCG
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTTGATTTTA
*
7577682 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT-TGATTTTA
* * * * *
7577726 ATCCACTCCACTGTAACTTCAGGGAGATAGGATTATCAGTTTCAATGTGATGTG
1 ATCTACTCCACTGTAACTTCAGAGAGATA--A-GATC---TT-GAT-T--T-TA
* *
7577780 ATCTACTCTACTGTAACTTCAGAGAGATAAG-TCATTTATTTTA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATC-TTGATTTTA
* * *
7577823 ATCCACTCCACTGTAACTTCAGAGAGATAGGATTACTT--TCTTTC
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGA-T-CTTGAT-TTTA
* * * * ***
7577867 GTCTGCTCCACTGTAACCTCA-AGGAGATAAGA-CCTGA-TGCG
1 ATCTACTCCACTGTAACTTCAGA-GAGATAAGATCTTGATTTTA
* * *
7577908 ATCTATTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGAT-CTTGATTTTA
* * *** **
7577952 AT-TCACTCCACTGTAACTTCAGGGAGATAGGATAGCG-TCTTCG
1 ATCT-ACTCCACTGTAACTTCAGAGAGATAAGATCTTGAT-TTTA
* * * ** *
7577995 ATCTGCTCCGCTGTAA-TCTCAGGGAGATAAGATCTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCT-TGATTTTA
* * *
7578039 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATCT
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCT
7578074 GAAATTCTTC
Statistics
Matches: 526, Mismatches: 123, Indels: 110
0.69 0.16 0.14
Matches are distributed among these distances:
41 88 0.17
42 5 0.01
43 71 0.13
44 260 0.49
45 11 0.02
46 5 0.01
47 8 0.02
48 4 0.01
49 5 0.01
50 9 0.02
51 4 0.01
52 2 0.00
53 2 0.00
54 52 0.10
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (43 bp):
ATCTACTCCACTGTAACTTCAGAGAGATAAGATCTTGATTTTA
Found at i:7577616 original size:98 final size:98
Alignment explanation
Indices: 7577447--7577631 Score: 309
Period size: 98 Copynumber: 1.9 Consensus size: 98
7577437 GAGATAAGAC
7577447 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTACACTG
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTACACTG
*
7577512 TAACTTCAGGGAGATAGGATTATCAGCTTCAAT
66 TAACTTCAGAGAGATAGGATTATCAGCTTCAAT
* * * *
7577545 CTGATGTGATCTACTCTACTGTAACTTCAGAGAGATTAGATCCT-TTATTTTAATCCACTCCACT
1 CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGAT-CTGTGATTTTAATCCACTACACT
7577609 GTAACTTCAGAGAGATAGGATTA
65 GTAACTTCAGAGAGATAGGATTA
7577632 CTTTCTTTCG
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
98 79 0.98
99 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.33
Consensus pattern (98 bp):
CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTACACTG
TAACTTCAGAGAGATAGGATTATCAGCTTCAAT
Found at i:7577854 original size:97 final size:98
Alignment explanation
Indices: 7577675--7577857 Score: 316
Period size: 97 Copynumber: 1.9 Consensus size: 98
7577665 AGATAAGACC
7577675 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTGT
1 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTGT
*
7577740 AACTTCAGGGAGATAGGATTATCAGTTTCAATG
66 AACTTCAGAGAGATAGGATTATCAGTTTCAATG
* *
7577773 TGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAG-TCAT-TTATTTTAATCCACTCCACTG
1 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATC-TGTGATTTTAATCCACTCCACTG
7577836 TAACTTCAGAGAGATAGGATTA
65 TAACTTCAGAGAGATAGGATTA
7577858 CTTTCTTTCG
Statistics
Matches: 81, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
97 43 0.53
98 38 0.47
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (98 bp):
TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTGT
AACTTCAGAGAGATAGGATTATCAGTTTCAATG
Found at i:7578001 original size:128 final size:128
Alignment explanation
Indices: 7577773--7578026 Score: 379
Period size: 128 Copynumber: 2.0 Consensus size: 128
7577763 AGTTTCAATG
*
7577773 TGATGTGATCTACTCTACTGTAACTTCAGAGAGATAAGTCATTTATTTTAATCCACTCCACTGTA
1 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGTCATTTATTTTAATCCACTCCACTGTA
*
7577838 ACTTCAGAGAGATAGGATTACTTTCTTTCGTCTGCTCCACTGTAACCTCAAGGAGATAAGACC
66 ACTTCAGAGAGATAGGATTACTGTCTTTCGTCTGCTCCACTGTAACCTCAAGGAGATAAGACC
* * *
7577901 TGATGCGATCTATTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATTCACTCCACTGT
1 TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAG-TCATTTATTTTAATCCACTCCACTGT
* * * *
7577966 AACTTCAGGGAGATAGGA-TAGC-GTC-TTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
65 AACTTCAGAGAGATAGGATTA-CTGTCTTTCG-TCTGCTCCACTGTAACCTCAAGGAGATAAGA
7578027 TCTCTGGCTT
Statistics
Matches: 114, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
127 4 0.04
128 68 0.60
129 42 0.37
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (128 bp):
TGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGTCATTTATTTTAATCCACTCCACTGTA
ACTTCAGAGAGATAGGATTACTGTCTTTCGTCTGCTCCACTGTAACCTCAAGGAGATAAGACC
Found at i:7578107 original size:46 final size:44
Alignment explanation
Indices: 7577957--7578116 Score: 166
Period size: 44 Copynumber: 3.6 Consensus size: 44
7577947 TTTTAATTCA
* *
7577957 CTCCACTGTAA-CTTCAGGGAGATAGGA--TAGCGTCTTCGATCTG
1 CTCCACTGTAATC-TCAGGGAGATAAGATCTA-TGTCTTCGATCTG
* * * *
7578000 CTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTATGTCTTCGATCTG
* *
7578044 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT-TCTTCGGTCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCT---ATGTCTTCGATCTG
*
7578090 CTCCACTGTAATCTCAGGGAAATAAGA
1 CTCCACTGTAATCTCAGGGAGATAAGA
7578117 CCTGTATAAT
Statistics
Matches: 97, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
43 23 0.24
44 39 0.40
45 1 0.01
46 33 0.34
47 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.28
Consensus pattern (44 bp):
CTCCACTGTAATCTCAGGGAGATAAGATCTATGTCTTCGATCTG
Found at i:7578448 original size:14 final size:14
Alignment explanation
Indices: 7578429--7578457 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7578419 AATCTAAGGG
7578429 TAGAAATATGTGGC
1 TAGAAATATGTGGC
7578443 TAGAAATATGTGGC
1 TAGAAATATGTGGC
7578457 T
1 T
7578458 TTTCCTCAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (14 bp):
TAGAAATATGTGGC
Found at i:7579431 original size:6 final size:6
Alignment explanation
Indices: 7579415--7579449 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
7579405 GCCTCTCCAT
*
7579415 TTTTCA TTTTTCA TTTTCA TTTTCA GTTTCA TTTT
1 TTTTCA -TTTTCA TTTTCA TTTTCA TTTTCA TTTT
7579450 TTTTGACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.14, C:0.14, G:0.03, T:0.69
Consensus pattern (6 bp):
TTTTCA
Found at i:7580386 original size:6 final size:6
Alignment explanation
Indices: 7580377--7580496 Score: 68
Period size: 6 Copynumber: 20.2 Consensus size: 6
7580367 TTTCTTTTTC
* * * * **
7580377 TCATTT TCATTT TCATTT TCATTT TGATCT TGATTT TGATTT TTTTTCT
1 TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT TCATTT TCATT-T
* ** * * **
7580426 TCTTTCT TC-TTT TTGTTT T--TTT T-ATTT TGATTTT TGATTT TTTTTT
1 TCATT-T TCATTT TCATTT TCATTT TCATTT TCA-TTT TCATTT TCATTT
7580472 TCATTT TCATTT TCATTT TCATTT T
1 TCATTT TCATTT TCATTT TCATTT T
7580497 GACTTTGACT
Statistics
Matches: 98, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
4 4 0.04
5 6 0.06
6 73 0.74
7 15 0.15
ACGTcount: A:0.12, C:0.11, G:0.05, T:0.72
Consensus pattern (6 bp):
TCATTT
Found at i:7580517 original size:6 final size:6
Alignment explanation
Indices: 7580379--7580520 Score: 67
Period size: 6 Copynumber: 23.8 Consensus size: 6
7580369 TCTTTTTCTC
* * * * * * *
7580379 ATTTTC ATTTTC ATTTTC ATTTTG ATCTTG ATTTTG ATTTTT TTTCTTC
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATT-TTG
* * * * * *
7580428 TTTCTTC TTTTTG -TTTT- -TTTT- ATTTTG ATTTTTG ATTTTT TTTTTC
1 ATT-TTG ATTTTG ATTTTG ATTTTG ATTTTG A-TTTTG ATTTTG ATTTTG
* * * * *
7580474 ATTTTC ATTTTC ATTTTC ATTTTG ACTTTG ACTTTG ATTTTG ATTTT
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTT
7580521 TCTTTTTCTT
Statistics
Matches: 118, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
4 4 0.03
5 8 0.07
6 88 0.75
7 18 0.15
ACGTcount: A:0.13, C:0.10, G:0.07, T:0.70
Consensus pattern (6 bp):
ATTTTG
Found at i:7584517 original size:16 final size:16
Alignment explanation
Indices: 7584496--7584534 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
7584486 AATTATGGAG
*
7584496 ATATATGAAAGCATGT
1 ATATATAAAAGCATGT
*
7584512 ATATATAAAAGTATGT
1 ATATATAAAAGCATGT
7584528 ATATATA
1 ATATATA
7584535 TGTATACGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.49, C:0.03, G:0.13, T:0.36
Consensus pattern (16 bp):
ATATATAAAAGCATGT
Found at i:7584812 original size:13 final size:13
Alignment explanation
Indices: 7584796--7584821 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7584786 TGAATCATAA
7584796 ATATAAAATACAT
1 ATATAAAATACAT
7584809 ATATAAAATACAT
1 ATATAAAATACAT
7584822 GTTTTAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (13 bp):
ATATAAAATACAT
Found at i:7584987 original size:20 final size:19
Alignment explanation
Indices: 7584936--7584988 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
7584926 AGGGTACGTG
7584936 TATATATAT-ATATAGATA
1 TATATATATAATATAGATA
* * *
7584954 GATCATAAAAAATATAGATA
1 TAT-ATATATAATATAGATA
7584974 TTATATATATAATAT
1 -TATATATATAATAT
7584989 GAAAACGCAT
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
18 2 0.08
19 4 0.15
20 18 0.69
21 2 0.08
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.40
Consensus pattern (19 bp):
TATATATATAATATAGATA
Found at i:7585102 original size:5 final size:5
Alignment explanation
Indices: 7585092--7585119 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
7585082 TTTTTATAAA
7585092 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
7585120 CAATAACAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:7586238 original size:20 final size:21
Alignment explanation
Indices: 7586215--7586261 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
7586205 TTTTTTGGGC
*
7586215 TGGGTTTTAATTTT-TCT-TTT
1 TGGGTTGTAATTTTAT-TGTTT
*
7586235 TGGGCTGTAATTTTATTGTTT
1 TGGGTTGTAATTTTATTGTTT
7586256 TGGGTT
1 TGGGTT
7586262 AGGTCTGTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.11, C:0.04, G:0.23, T:0.62
Consensus pattern (21 bp):
TGGGTTGTAATTTTATTGTTT
Found at i:7586873 original size:20 final size:20
Alignment explanation
Indices: 7586846--7586893 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
7586836 TAAAGTTTTG
*
7586846 TTTA-TTTTTTATT-TTTATT
1 TTTAGTTTTTTATTCTTT-CT
*
7586865 TTTAGTTTTTTCTTCTTTCT
1 TTTAGTTTTTTATTCTTTCT
7586885 TTTAGTTTT
1 TTTAGTTTT
7586894 AAAAAACGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 4 0.16
20 18 0.72
21 3 0.12
ACGTcount: A:0.10, C:0.06, G:0.04, T:0.79
Consensus pattern (20 bp):
TTTAGTTTTTTATTCTTTCT
Found at i:7587613 original size:11 final size:12
Alignment explanation
Indices: 7587565--7587613 Score: 52
Period size: 11 Copynumber: 4.3 Consensus size: 12
7587555 TTATTAATTC
7587565 ATTATTTTTAAT
1 ATTATTTTTAAT
7587577 ATTA-TTTTAAT
1 ATTATTTTTAAT
*
7587588 ATTGA--CTTAAT
1 ATT-ATTTTTAAT
7587599 ATTATTTTTAA-
1 ATTATTTTTAAT
7587610 ATTA
1 ATTA
7587614 ATTATTAGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
10 1 0.03
11 22 0.69
12 9 0.28
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (12 bp):
ATTATTTTTAAT
Found at i:7588354 original size:2 final size:2
Alignment explanation
Indices: 7588347--7588383 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
7588337 TACGATTGTA
7588347 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7588384 ATTCTTAAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7589718 original size:10 final size:11
Alignment explanation
Indices: 7589703--7589751 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
7589693 AACTAAATCC
7589703 TTTCTCTC-AA
1 TTTCTCTCAAA
*
7589713 TTTCTCTCTAA
1 TTTCTCTCAAA
*
7589724 TATTCTATCAAA
1 T-TTCTCTCAAA
*
7589736 TTCCTCTCAAA
1 TTTCTCTCAAA
7589747 TTTCT
1 TTTCT
7589752 ATTTAAAAGA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
10 8 0.25
11 15 0.47
12 9 0.28
ACGTcount: A:0.24, C:0.27, G:0.00, T:0.49
Consensus pattern (11 bp):
TTTCTCTCAAA
Found at i:7591991 original size:124 final size:125
Alignment explanation
Indices: 7591750--7592161 Score: 684
Period size: 125 Copynumber: 3.3 Consensus size: 125
7591740 CCAAACATGT
* * *
7591750 TACTGTAGCAAAAAACGCGTCCACATGGGAGCGATTTCA-AAACTTCTTCTGATAAAGCATCCTG
1 TACTGTAGC-AAAAGCGCATCCACGTGGGAGCGATTTCAGAAA-TTCTTCTGATAAAGCATCCTG
7591814 CTTGAAGCG-TTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACC
64 CTTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACC
* *
7591875 TACTGTAGCAAAAGCGCATCCACGTGGGAACGATTTCAGAAATTCTTCTGATAAAGCATCTTGCT
1 TACTGTAGCAAAAGCGCATCCACGTGGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCT
* * *
7591940 TCAAGTGTTTTTTATACTATTTGCTCAGAAACATCAACTCGAAATTATTTTTTCAGGACC
66 TGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACC
*
7592000 TACTGTAGCAAAAGTGCATCCACGTGGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCT
1 TACTGTAGCAAAAGCGCATCCACGTGGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCT
* *
7592065 TGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTCAGGACT
66 TGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACC
*
7592125 TACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTC
1 TACTGTAGCAAAAGCGCATCCACGTGGGAGCGATTTC
7592162 CTTAATAAAT
Statistics
Matches: 267, Mismatches: 18, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
124 52 0.19
125 215 0.81
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (125 bp):
TACTGTAGCAAAAGCGCATCCACGTGGGAGCGATTTCAGAAATTCTTCTGATAAAGCATCCTGCT
TGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACC
Found at i:7592347 original size:8 final size:9
Alignment explanation
Indices: 7592327--7592355 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
7592317 ATTTTTCTCC
7592327 AAAACCCTA
1 AAAACCCTA
7592336 AAAACCCTA
1 AAAACCCTA
7592345 AAAACCC-A
1 AAAACCCTA
7592353 AAA
1 AAA
7592356 TCTAACGTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 4 0.20
9 16 0.80
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.07
Consensus pattern (9 bp):
AAAACCCTA
Found at i:7602182 original size:14 final size:13
Alignment explanation
Indices: 7602159--7602189 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
7602149 TCGATTAAAC
7602159 TAAATAAATCGAA
1 TAAATAAATCGAA
7602172 TAAATTAAATCGAA
1 TAAA-TAAATCGAA
7602186 TAAA
1 TAAA
7602190 CTGGTGAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.26
Consensus pattern (13 bp):
TAAATAAATCGAA
Found at i:7606222 original size:31 final size:29
Alignment explanation
Indices: 7606157--7606222 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 29
7606147 ATGATAACGT
** *
7606157 AAGTGACTAAAACGTAATATTTCAAACAT
1 AAGTGACTAAAACGTAATATGACAAACAA
* *
7606186 GAGTGACTAAAATGTAATATGAGACAAACAA
1 AAGTGACTAAAACGTAATAT--GACAAACAA
7606217 AAGTGA
1 AAGTGA
7606223 TTATTTTTGT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
29 18 0.62
31 11 0.38
ACGTcount: A:0.50, C:0.11, G:0.17, T:0.23
Consensus pattern (29 bp):
AAGTGACTAAAACGTAATATGACAAACAA
Found at i:7606882 original size:11 final size:11
Alignment explanation
Indices: 7606866--7606891 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7606856 TGATCTTATT
7606866 AAAAATTATAA
1 AAAAATTATAA
7606877 AAAAATTATAA
1 AAAAATTATAA
7606888 AAAA
1 AAAA
7606892 CAATAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (11 bp):
AAAAATTATAA
Found at i:7607012 original size:19 final size:19
Alignment explanation
Indices: 7606930--7607020 Score: 96
Period size: 19 Copynumber: 4.8 Consensus size: 19
7606920 TTAATAAGAA
7606930 TATAAAAATTATAAAA-TT
1 TATAAAAATTATAAAATTT
* * *
7606948 TATTAACAATTAGAAATTTT
1 TA-TAAAAATTATAAAATTT
* **
7606968 TATAAAAATCATAAAAAAT
1 TATAAAAATTATAAAATTT
*
7606987 TGT-AAAATTATAAAATTT
1 TATAAAAATTATAAAATTT
7607005 TATAAAAATTATAAAA
1 TATAAAAATTATAAAA
7607021 AAATTACTGA
Statistics
Matches: 56, Mismatches: 14, Indels: 5
0.75 0.19 0.07
Matches are distributed among these distances:
18 16 0.29
19 36 0.64
20 4 0.07
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (19 bp):
TATAAAAATTATAAAATTT
Found at i:7607025 original size:38 final size:39
Alignment explanation
Indices: 7606930--7607022 Score: 120
Period size: 37 Copynumber: 2.5 Consensus size: 39
7606920 TTAATAAGAA
* * *
7606930 TATAAAAATTAT-AAAATTTATTAACAATTAGAAATTTT
1 TATAAAAATTATAAAAAATTAGTAACAATTAGAAAATTT
* *
7606968 TATAAAAATCATAAAAAATT-GTAA-AATTATAAAATTT
1 TATAAAAATTATAAAAAATTAGTAACAATTAGAAAATTT
7607005 TATAAAAATTATAAAAAA
1 TATAAAAATTATAAAAAA
7607023 ATTACTGACC
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
37 28 0.58
38 14 0.29
39 6 0.12
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (39 bp):
TATAAAAATTATAAAAAATTAGTAACAATTAGAAAATTT
Found at i:7607327 original size:19 final size:19
Alignment explanation
Indices: 7607272--7607348 Score: 95
Period size: 19 Copynumber: 4.2 Consensus size: 19
7607262 ATATTTTATT
* *
7607272 TTTTTACAATATTTATAAA
1 TTTTTACAATTTTTATATA
*
7607291 ATTTTACAATTTTTATATA
1 TTTTTACAATTTTTATATA
*
7607310 TTTTTACGATTTTTATAT-
1 TTTTTACAATTTTTATATA
*
7607328 TTTTTATAATTTTTA-ATA
1 TTTTTACAATTTTTATATA
7607346 TTT
1 TTT
7607349 AAATTTTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
17 2 0.04
18 16 0.32
19 32 0.64
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.62
Consensus pattern (19 bp):
TTTTTACAATTTTTATATA
Found at i:7607340 original size:17 final size:17
Alignment explanation
Indices: 7607239--7607340 Score: 64
Period size: 17 Copynumber: 5.7 Consensus size: 17
7607229 AAATTATAAA
*
7607239 TTTTATAAATTTTTTA-T
1 TTTTAT-AATTTTATATT
7607256 TTTTATATATTTTAT-TT
1 TTTTATA-ATTTTATATT
* **
7607273 TTTTACAATATTTATAAAA
1 TTTTATAAT-TTTAT-ATT
*
7607292 TTTTACAATTTTTATATAT
1 TTTTATAA-TTTTATAT-T
* *
7607311 TTTTACGATTTTTATATT
1 TTTTA-TAATTTTATATT
7607329 TTTTATAATTTT
1 TTTTATAATTTT
7607341 TAATATTTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
16 3 0.04
17 29 0.43
18 7 0.10
19 26 0.39
20 2 0.03
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (17 bp):
TTTTATAATTTTATATT
Found at i:7607348 original size:27 final size:27
Alignment explanation
Indices: 7607254--7607348 Score: 79
Period size: 28 Copynumber: 3.5 Consensus size: 27
7607244 TAAATTTTTT
*
7607254 ATTTTT-ATATATTTTAT-TTTTTTACA
1 ATTTTTAATAT-TTTTATATTTTTTATA
* * *
7607280 ATATTTATAA-AATTTTACAATTTTTATA
1 AT-TTT-TAATATTTTTATATTTTTTATA
**
7607308 TATTTTTACGATTTTTATATTTTTTATA
1 -ATTTTTAATATTTTTATATTTTTTATA
7607336 ATTTTTAATATTT
1 ATTTTTAATATTT
7607349 AAATTTTTTT
Statistics
Matches: 53, Mismatches: 10, Indels: 11
0.72 0.14 0.15
Matches are distributed among these distances:
26 2 0.04
27 21 0.40
28 27 0.51
29 3 0.06
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (27 bp):
ATTTTTAATATTTTTATATTTTTTATA
Found at i:7607357 original size:27 final size:28
Alignment explanation
Indices: 7607300--7607360 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
7607290 AATTTTACAA
* **
7607300 TTTTTATATATTTTTACGATTTTTATAT
1 TTTTTATATATTTTTAAGATTTAAATAT
*
7607328 TTTTTATA-ATTTTTAATATTTAAAT-T
1 TTTTTATATATTTTTAAGATTTAAATAT
7607354 TTTTTAT
1 TTTTTAT
7607361 TAAAATTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 8 0.28
27 13 0.45
28 8 0.28
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.69
Consensus pattern (28 bp):
TTTTTATATATTTTTAAGATTTAAATAT
Found at i:7607521 original size:89 final size:87
Alignment explanation
Indices: 7607417--7607597 Score: 215
Period size: 88 Copynumber: 2.1 Consensus size: 87
7607407 AATTTTTAAT
* * *
7607417 AAAAATAGGGGCTTAATTGCTTTTTTTTTAAAA-ATTTGACG-G-TCTTTTTGATGCATTTTGAA
1 AAAAATAGGGACTTAACTGC--TTTTTTGAAAAGATTTGA-GAGCT-TTTTTGATGCATTTTGAA
*
7607479 AGTTCAAGTACCCAATTGAGTGCAAA
62 AGTTCAAGTACCCAAATGAGTGCAAA
* *
7607505 AAAAAGTAGGGACTTAACTGCTTTTTTGAAAAGGTTTGAGAGCTTTTTTTATGCATTTTGAAAGT
1 AAAAA-TAGGGACTTAACTGCTTTTTTGAAAAGATTTGAGAGCTTTTTTGATGCATTTTGAAAGT
* * *
7607570 TTAAGTACCTAAATGAGTGTAAA
65 TCAAGTACCCAAATGAGTGCAAA
7607593 AAAAA
1 AAAAA
7607598 AAAGAGTTAA
Statistics
Matches: 80, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
87 11 0.14
88 55 0.69
89 14 0.17
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.37
Consensus pattern (87 bp):
AAAAATAGGGACTTAACTGCTTTTTTGAAAAGATTTGAGAGCTTTTTTGATGCATTTTGAAAGTT
CAAGTACCCAAATGAGTGCAAA
Found at i:7613018 original size:6 final size:6
Alignment explanation
Indices: 7613007--7613036 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
7612997 GCTTTATTGC
7613007 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
7613037 TGCACCAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
ATTTTT
Found at i:7617798 original size:6 final size:6
Alignment explanation
Indices: 7617787--7617820 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
7617777 AGATGATGAG
7617787 GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA GAAG
1 GAAGGA GAAGGA GAAGGA GAAGGA GAAGGA GAAG
7617821 CAAGCATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (6 bp):
GAAGGA
Done.