Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62769430
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1067035 characters in sequence are not A, C, G, or T
File 27 of 206
Found at i:7935423 original size:41 final size:41
Alignment explanation
Indices: 7935361--7935444 Score: 150
Period size: 41 Copynumber: 2.0 Consensus size: 41
7935351 GTCGCAAAGT
*
7935361 CTACACTGACATTATAAGTTGGGGAATGTTAGTATAACACC
1 CTACACTGACATTATAAGTTGGGAAATGTTAGTATAACACC
*
7935402 CTACACTGACATTATATGTTGGGAAATGTTAGTATAACACC
1 CTACACTGACATTATAAGTTGGGAAATGTTAGTATAACACC
7935443 CT
1 CT
7935445 TAACCCCTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (41 bp):
CTACACTGACATTATAAGTTGGGAAATGTTAGTATAACACC
Found at i:7936999 original size:19 final size:20
Alignment explanation
Indices: 7936967--7937030 Score: 62
Period size: 19 Copynumber: 3.4 Consensus size: 20
7936957 ATCTTTGAAT
**
7936967 TCATTTCAAAATTT-ACATC
1 TCATTTCATCATTTCACATC
* *
7936986 TCATTTCATCATTTCATATT
1 TCATTTCATCATTTCACATC
*
7937006 TCATTTC-TCATTTCATAT-
1 TCATTTCATCATTTCACATC
7937024 TCATTTC
1 TCATTTC
7937031 TCAACTTTGC
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
18 7 0.17
19 23 0.57
20 10 0.25
ACGTcount: A:0.27, C:0.22, G:0.00, T:0.52
Consensus pattern (20 bp):
TCATTTCATCATTTCACATC
Found at i:7939292 original size:13 final size:13
Alignment explanation
Indices: 7939274--7939300 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7939264 CTATCATTTT
7939274 AAATTGTATGATA
1 AAATTGTATGATA
7939287 AAATTGTATGATA
1 AAATTGTATGATA
7939300 A
1 A
7939301 TAATACTCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.37
Consensus pattern (13 bp):
AAATTGTATGATA
Found at i:7943603 original size:72 final size:73
Alignment explanation
Indices: 7943483--7943633 Score: 268
Period size: 72 Copynumber: 2.1 Consensus size: 73
7943473 CGACAAAGGC
*
7943483 ATTGGCGGAGAGGTAATGTCTGATTAAAGAACGCATGCAAAAAGAACCATTAAAACTTCTTTT-A
1 ATTGGCGGAGAGGTAATGTCTGATTAAAGAACGCATGCAAAAAAAACCATTAAAACTTCTTTTAA
* *
7943547 TTGGCTCT
66 CTAGCTCT
7943555 ATTGGCGGAGAGGTAATGTCTGATTAAAGAACGCATGCAAAAAAAACCATTAAAACTTCTTTTAA
1 ATTGGCGGAGAGGTAATGTCTGATTAAAGAACGCATGCAAAAAAAACCATTAAAACTTCTTTTAA
7943620 CTAGCTCT
66 CTAGCTCT
7943628 ATTGGC
1 ATTGGC
7943634 TTATCCATGT
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
72 62 0.83
73 13 0.17
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (73 bp):
ATTGGCGGAGAGGTAATGTCTGATTAAAGAACGCATGCAAAAAAAACCATTAAAACTTCTTTTAA
CTAGCTCT
Found at i:7945501 original size:24 final size:25
Alignment explanation
Indices: 7945474--7945530 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 25
7945464 GAAGGATGAT
*
7945474 AAGGCTGAGACAAA-A-AAGGAAGTG
1 AAGGCTGAGA-AAAGAGAAGGAAGCG
7945498 AAGGCTGA-AAAAGAGAAGGAAGCG
1 AAGGCTGAGAAAAGAGAAGGAAGCG
7945522 AAGGCTGAG
1 AAGGCTGAG
7945531 TGAAAATGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 3 0.10
23 2 0.07
24 24 0.83
ACGTcount: A:0.47, C:0.09, G:0.37, T:0.07
Consensus pattern (25 bp):
AAGGCTGAGAAAAGAGAAGGAAGCG
Found at i:7949295 original size:2 final size:2
Alignment explanation
Indices: 7949288--7949316 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7949278 CAAAGTTTAA
7949288 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7949317 AACAAGTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7949365 original size:11 final size:12
Alignment explanation
Indices: 7949343--7949391 Score: 55
Period size: 11 Copynumber: 4.1 Consensus size: 12
7949333 TAATGTATAT
*
7949343 ATATATTTAAAA
1 ATATATATAAAA
7949355 ATATAT-TAAAA
1 ATATATATAAAA
*
7949366 ATATATGTATAAA
1 ATATATATA-AAA
*
7949379 GTATATATAAAA
1 ATATATATAAAA
7949391 A
1 A
7949392 AAATATAAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
11 11 0.34
12 11 0.34
13 10 0.31
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (12 bp):
ATATATATAAAA
Found at i:7949489 original size:3 final size:3
Alignment explanation
Indices: 7949481--7949506 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7949471 TAAATGGGTA
7949481 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
7949507 AACTAATTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7950303 original size:16 final size:17
Alignment explanation
Indices: 7950285--7950320 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
7950275 AAAGTAAAGT
7950285 AAAGAGCAGAAAAAATA
1 AAAGAGCAGAAAAAATA
*
7950302 AAAGAGTAGAAAAAA-A
1 AAAGAGCAGAAAAAATA
7950318 AAA
1 AAA
7950321 CACCTTTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.75, C:0.03, G:0.17, T:0.06
Consensus pattern (17 bp):
AAAGAGCAGAAAAAATA
Found at i:7954680 original size:23 final size:23
Alignment explanation
Indices: 7954651--7954703 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
7954641 TTAGGAACGT
* * *
7954651 CAAAGTGCTAAATATGGGAGTAC
1 CAAAGTGCTAAACATAGGAGCAC
*
7954674 CAGAGTGCTAAACATAGGAGCAC
1 CAAAGTGCTAAACATAGGAGCAC
7954697 CAAAGTG
1 CAAAGTG
7954704 TTCAATACAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.40, C:0.17, G:0.26, T:0.17
Consensus pattern (23 bp):
CAAAGTGCTAAACATAGGAGCAC
Found at i:7955121 original size:48 final size:48
Alignment explanation
Indices: 7955062--7955157 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
7955052 AATTTAAAGA
7955062 ATATCTATAATTTCAATTACAACAATCACAAGATATTATTCACTAAAT
1 ATATCTATAATTTCAATTACAACAATCACAAGATATTATTCACTAAAT
*
7955110 ATATCTGTAATTTCAATTACAACAATCACAAGATATTATTCACTAAAT
1 ATATCTATAATTTCAATTACAACAATCACAAGATATTATTCACTAAAT
7955158 CCTTAGTCCA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.45, C:0.17, G:0.03, T:0.35
Consensus pattern (48 bp):
ATATCTATAATTTCAATTACAACAATCACAAGATATTATTCACTAAAT
Found at i:7956082 original size:5 final size:5
Alignment explanation
Indices: 7956064--7956113 Score: 68
Period size: 5 Copynumber: 10.2 Consensus size: 5
7956054 TTCCTTTATT
*
7956064 TAAT- TAAT- TAATA TAATA TAATA TAATA TAATA TAATA CTAAAA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA -TAATA TAATA
7956113 T
1 T
7956114 TATTTATAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
4 8 0.19
5 30 0.71
6 4 0.10
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (5 bp):
TAATA
Found at i:7959854 original size:20 final size:20
Alignment explanation
Indices: 7959829--7959868 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
7959819 AGTCTTTCTG
7959829 CGATTT-CCCTTCATCCTTTC
1 CGATTTGCCC-TCATCCTTTC
7959849 CGATTTGCCCTCATCCTTTC
1 CGATTTGCCCTCATCCTTTC
7959869 TTCATCTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.10, C:0.40, G:0.07, T:0.42
Consensus pattern (20 bp):
CGATTTGCCCTCATCCTTTC
Found at i:7961528 original size:17 final size:17
Alignment explanation
Indices: 7961506--7961538 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7961496 TTATTTTCTA
7961506 TATAAGTTTTCTAAATT
1 TATAAGTTTTCTAAATT
*
7961523 TATAAGTTTTGTAAAT
1 TATAAGTTTTCTAAAT
7961539 AATTATTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.03, G:0.09, T:0.52
Consensus pattern (17 bp):
TATAAGTTTTCTAAATT
Found at i:7961584 original size:15 final size:16
Alignment explanation
Indices: 7961547--7961585 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
7961537 ATAATTATTC
*
7961547 TAAATTTATTAGTATA
1 TAAATTTAGTAGTATA
*
7961563 AAAATTTAGTAGTAT-
1 TAAATTTAGTAGTATA
7961578 TAAATTTA
1 TAAATTTA
7961586 TAAGTTTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (16 bp):
TAAATTTAGTAGTATA
Found at i:7961586 original size:61 final size:61
Alignment explanation
Indices: 7961517--7961666 Score: 178
Period size: 61 Copynumber: 2.5 Consensus size: 61
7961507 ATAAGTTTTC
7961517 TAAATTTATAAGTTTTGTAAATAATTATTCTAAATTTATTAGT-ATAAAAATTTAGT-AGTAT
1 TAAATTTATAAGTTTTGTAAATAATTATTCTAAATTTATTAGTAAT-AAAATTTA-TAAGTAT
* * * * * *
7961578 TAAATTTATAAGTTTTCTAAAAAAGTGTTCTAGATTTATTATTAATAAAATTTATAAGTAT
1 TAAATTTATAAGTTTTGTAAATAATTATTCTAAATTTATTAGTAATAAAATTTATAAGTAT
* * * *
7961639 CAATTTTACACGTTTTGTAAATAATTAT
1 TAAATTTATAAGTTTTGTAAATAATTAT
7961667 ATTTTTTTAA
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
60 1 0.01
61 70 0.96
62 2 0.03
ACGTcount: A:0.41, C:0.04, G:0.08, T:0.47
Consensus pattern (61 bp):
TAAATTTATAAGTTTTGTAAATAATTATTCTAAATTTATTAGTAATAAAATTTATAAGTAT
Found at i:7961918 original size:95 final size:95
Alignment explanation
Indices: 7961810--7962073 Score: 397
Period size: 95 Copynumber: 2.8 Consensus size: 95
7961800 AATCATTTGC
* * * *
7961810 TTACTTAATACATAATAACACAATGCATAA-TTGGTATATAAGCTTGCATAACTTACATAATAAC
1 TTACATAATACATAATAACATAATACATAACTT-ATATATAAGCTTGCATAACTTACATAATAAC
7961874 TTCCATAACGTATATATAATAAT-ATAATAAA
65 TTCCATAACGTATATATAAT-ATGATAATAAA
*
7961905 TTACATAATACATAATAACATAATACATAACTTATATATAAGCTTGTATAACTTACATAATAACT
1 TTACATAATACATAATAACATAATACATAACTTATATATAAGCTTGCATAACTTACATAATAACT
* * * *
7961970 TTCATAACTTATATATAATCTGATAATACA
66 TCCATAACGTATATATAATATGATAATAAA
*
7962000 TTACATAATACATAATAACATAATACATAACTTATATTATAATCTTGCATAACTTACATAATAAC
1 TTACATAATACATAATAACATAATACATAACTTATA-TATAAGCTTGCATAACTTACATAATAAC
7962065 TTCCATAAC
65 TTCCATAAC
7962074 TTAATACACC
Statistics
Matches: 154, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
94 1 0.01
95 117 0.76
96 36 0.23
ACGTcount: A:0.46, C:0.15, G:0.04, T:0.35
Consensus pattern (95 bp):
TTACATAATACATAATAACATAATACATAACTTATATATAAGCTTGCATAACTTACATAATAACT
TCCATAACGTATATATAATATGATAATAAA
Found at i:7961941 original size:53 final size:52
Alignment explanation
Indices: 7961877--7962042 Score: 154
Period size: 53 Copynumber: 3.3 Consensus size: 52
7961867 TAATAACTTC
*
7961877 CATAACGTATATATAATAATATAATAAATTACATAATACATAATAACATAATA
1 CATAACTTATATATAATAATATAAT-AATTACATAATACATAATAACATAATA
** * * *
7961930 CATAACTTATATATAA-GCT-T-GT-ATAAC-T--TACATAATAAC-T--TT
1 CATAACTTATATATAATAATATAATAATTACATAATACATAATAACATAATA
***
7961972 CATAACTTATATATAATCTGATAATACATTACATAATACATAATAACATAATA
1 CATAACTTATATATAATAATATAATA-ATTACATAATACATAATAACATAATA
7962025 CATAACTTATATTATAAT
1 CATAACTTATA-TATAAT
7962043 CTTGCATAAC
Statistics
Matches: 89, Mismatches: 12, Indels: 23
0.72 0.10 0.19
Matches are distributed among these distances:
42 17 0.19
44 2 0.02
45 12 0.13
47 5 0.06
48 5 0.06
50 12 0.13
51 2 0.02
52 1 0.01
53 27 0.30
54 6 0.07
ACGTcount: A:0.49, C:0.12, G:0.02, T:0.36
Consensus pattern (52 bp):
CATAACTTATATATAATAATATAATAATTACATAATACATAATAACATAATA
Found at i:7961956 original size:21 final size:20
Alignment explanation
Indices: 7961930--7961987 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 20
7961920 TAACATAATA
7961930 CATAACTTATATATAAGCTTGT
1 CATAACTTATATATAA-CTT-T
*
7961952 -ATAACTTACATAATAACTTT
1 CATAACTTATAT-ATAACTTT
7961972 CATAACTTATATATAA
1 CATAACTTATATATAA
7961988 TCTGATAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 5 0.16
21 23 0.72
22 4 0.12
ACGTcount: A:0.43, C:0.14, G:0.03, T:0.40
Consensus pattern (20 bp):
CATAACTTATATATAACTTT
Found at i:7962009 original size:12 final size:14
Alignment explanation
Indices: 7961992--7962028 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
7961982 ATATAATCTG
7961992 ATAATACAT-T-AC
1 ATAATACATATAAC
7962004 ATAATACATAATAAC
1 ATAATACAT-ATAAC
7962019 ATAATACATA
1 ATAATACATA
7962029 ACTTATATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 9 0.41
14 2 0.09
15 11 0.50
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.30
Consensus pattern (14 bp):
ATAATACATATAAC
Found at i:7962022 original size:8 final size:7
Alignment explanation
Indices: 7961992--7962029 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
7961982 ATATAATCTG
7961992 ATAATAC
1 ATAATAC
7961999 AT--TAC
1 ATAATAC
7962004 ATAATAC
1 ATAATAC
7962011 ATAATAAC
1 ATAAT-AC
7962019 ATAATAC
1 ATAATAC
7962026 ATAA
1 ATAA
7962030 CTTATATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
5 5 0.18
7 16 0.57
8 7 0.25
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (7 bp):
ATAATAC
Found at i:7962041 original size:27 final size:27
Alignment explanation
Indices: 7961972--7962042 Score: 65
Period size: 27 Copynumber: 2.7 Consensus size: 27
7961962 TAATAACTTT
***
7961972 CATAACTTATA-TATAATCTGATAATA
1 CATAACTTATATTATAATAACATAATA
* * *
7961998 CATTACATA-ATACATAATAACATAATA
1 CATAACTTATAT-TATAATAACATAATA
7962025 CATAACTTATATTATAAT
1 CATAACTTATATTATAAT
7962043 CTTGCATAAC
Statistics
Matches: 33, Mismatches: 9, Indels: 5
0.70 0.19 0.11
Matches are distributed among these distances:
25 1 0.03
26 7 0.21
27 23 0.70
28 2 0.06
ACGTcount: A:0.49, C:0.13, G:0.01, T:0.37
Consensus pattern (27 bp):
CATAACTTATATTATAATAACATAATA
Found at i:7962050 original size:22 final size:21
Alignment explanation
Indices: 7962025--7962076 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
7962015 TAACATAATA
* * *
7962025 CATAACTTATATTATAATCTTG
1 CATAACTTACATAATAA-CTTC
7962047 CATAACTTACATAATAACTTC
1 CATAACTTACATAATAACTTC
7962068 CATAACTTA
1 CATAACTTA
7962077 ATACACCACT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 12 0.44
22 15 0.56
ACGTcount: A:0.40, C:0.19, G:0.02, T:0.38
Consensus pattern (21 bp):
CATAACTTACATAATAACTTC
Found at i:7962175 original size:9 final size:9
Alignment explanation
Indices: 7962147--7962352 Score: 118
Period size: 9 Copynumber: 24.2 Consensus size: 9
7962137 CATATATAGA
*
7962147 AACTGACAT
1 AACTTACAT
* *
7962156 AAATTAAAT
1 AACTTACAT
7962165 AACTTACAT
1 AACTTACAT
7962174 AACTTACAT
1 AACTTACAT
* *
7962183 AAATTAAAT
1 AACTTACAT
*
7962192 TACTTACAT
1 AACTTACAT
7962201 AACTTACAT
1 AACTTACAT
*
7962210 TA--TACAT
1 AACTTACAT
*
7962217 AACCTT-CTT
1 AA-CTTACAT
7962226 AACTTACAT
1 AACTTACAT
* *
7962235 TA--TACAC
1 AACTTACAT
* *
7962242 GACTCACAT
1 AACTTACAT
7962251 AA-TTA-AT
1 AACTTACAT
* *
7962258 -ATTATACAC
1 AACT-TACAT
7962267 AACTTACAT
1 AACTTACAT
*
7962276 AA-TAAC-T
1 AACTTACAT
**
7962283 TTCTTACAT
1 AACTTACAT
7962292 AACTTACAT
1 AACTTACAT
*
7962301 TACTTACA-
1 AACTTACAT
7962309 ATACTTACAT
1 A-ACTTACAT
7962319 AA--TACAT
1 AACTTACAT
7962326 AA--TACAT
1 AACTTACAT
7962333 AACTTACAT
1 AACTTACAT
7962342 AACTTACAT
1 AACTTACAT
7962351 AA
1 AA
7962353 TACATAAAAA
Statistics
Matches: 148, Mismatches: 33, Indels: 32
0.69 0.15 0.15
Matches are distributed among these distances:
6 1 0.01
7 29 0.20
8 13 0.09
9 101 0.68
10 4 0.03
ACGTcount: A:0.45, C:0.19, G:0.01, T:0.34
Consensus pattern (9 bp):
AACTTACAT
Found at i:7962326 original size:7 final size:7
Alignment explanation
Indices: 7962314--7962359 Score: 56
Period size: 7 Copynumber: 6.0 Consensus size: 7
7962304 TTACAATACT
7962314 TACATAA
1 TACATAA
7962321 TACATAA
1 TACATAA
7962328 TACATAA
1 TACATAA
7962335 CTTACATAA
1 --TACATAA
7962344 CTTACATAA
1 --TACATAA
7962353 TACATAA
1 TACATAA
7962360 AAATATATCA
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
7 21 0.57
9 16 0.43
ACGTcount: A:0.52, C:0.17, G:0.00, T:0.30
Consensus pattern (7 bp):
TACATAA
Found at i:7962338 original size:32 final size:33
Alignment explanation
Indices: 7962287--7962359 Score: 105
Period size: 32 Copynumber: 2.2 Consensus size: 33
7962277 ATAACTTTCT
*
7962287 TACATAACTTACATTACTTACA-ATACTTACATAA
1 TACATAAC-TACATAACTTACATA-ACTTACATAA
7962321 TACATAA-TACATAACTTACATAACTTACATAA
1 TACATAACTACATAACTTACATAACTTACATAA
7962353 TACATAA
1 TACATAA
7962360 AAATATATCA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
32 29 0.78
33 1 0.03
34 7 0.19
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (33 bp):
TACATAACTACATAACTTACATAACTTACATAA
Found at i:7969805 original size:24 final size:24
Alignment explanation
Indices: 7969772--7969817 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
7969762 TCATTTAACT
* *
7969772 TAATTGAATATGTTCATGAACATA
1 TAATTAAATATGTTCACGAACATA
7969796 TAATTAAATATGTTCACGAACA
1 TAATTAAATATGTTCACGAACA
7969818 ATGTTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.35
Consensus pattern (24 bp):
TAATTAAATATGTTCACGAACATA
Found at i:7989346 original size:9 final size:8
Alignment explanation
Indices: 7989330--7989372 Score: 52
Period size: 8 Copynumber: 5.2 Consensus size: 8
7989320 AAAAATTTCT
7989330 AAAATATA
1 AAAATATA
7989338 AAAATTATA
1 AAAA-TATA
7989347 AAAACTA-A
1 AAAA-TATA
*
7989355 AAAATACA
1 AAAATATA
7989363 AAAATATA
1 AAAATATA
7989371 AA
1 AA
7989373 TATGTTAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
7 2 0.06
8 19 0.61
9 10 0.32
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (8 bp):
AAAATATA
Found at i:7989350 original size:17 final size:17
Alignment explanation
Indices: 7989312--7989372 Score: 56
Period size: 17 Copynumber: 3.6 Consensus size: 17
7989302 CATCATTCGA
*
7989312 AAAAATAAAAAAATT-T
1 AAAAATATAAAAATTAT
*
7989328 CTAAAATATAAAAATTAT
1 -AAAAATATAAAAATTAT
*
7989346 AAAAACTA-AAAAA-TAC
1 AAAAA-TATAAAAATTAT
7989362 AAAAATATAAA
1 AAAAATATAAA
7989373 TATGTTAGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
15 2 0.05
16 10 0.27
17 22 0.59
18 3 0.08
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (17 bp):
AAAAATATAAAAATTAT
Found at i:7989597 original size:18 final size:18
Alignment explanation
Indices: 7989545--7989597 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
7989535 TATATAATTA
7989545 AAAAATACAATCAATTTTT
1 AAAAATACAATCAA-TTTT
* *
7989564 ATAAA-AGAATGC-ATTTT
1 AAAAATACAAT-CAATTTT
7989581 AAAAATACAATCAATTT
1 AAAAATACAATCAATTT
7989598 CCTAAACTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 7
0.71 0.11 0.18
Matches are distributed among these distances:
17 9 0.33
18 13 0.48
19 5 0.19
ACGTcount: A:0.53, C:0.09, G:0.04, T:0.34
Consensus pattern (18 bp):
AAAAATACAATCAATTTT
Found at i:7993456 original size:29 final size:29
Alignment explanation
Indices: 7993414--7993471 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
7993404 TTGAGCGTTG
7993414 GATGAATTAATTTTTTGAACCAAATTATA
1 GATGAATTAATTTTTTGAACCAAATTATA
* *
7993443 GATGAATTAATTTTTTGGACTAAATTATA
1 GATGAATTAATTTTTTGAACCAAATTATA
7993472 AGGTACAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.43
Consensus pattern (29 bp):
GATGAATTAATTTTTTGAACCAAATTATA
Found at i:7994692 original size:195 final size:192
Alignment explanation
Indices: 7994353--7994759 Score: 478
Period size: 195 Copynumber: 2.1 Consensus size: 192
7994343 ACTGGGCATT
* * * * * *
7994353 GAATTATGTCAAAAAATTAAAGTATAGAGATTAAATTTTAAAATTGTGCTTATTATTGGGAGCAA
1 GAATTATGTC-AAAAATTAAAGTATAAAGATTAAATTTTAAAATTGAGCATAATATAGGAAGCAA
* * * * * **
7994418 AACTTTGACTATTGTTATATAATCTCAAAAAAGAAGTAAAAGGTCGTGTATTTGGACATGTGTAC
65 AAATTTGACCATTATTATATAATCTCAAAAAAGAAGTAAAAGATCGTGCATCGGGACATGTGTAC
* * * * ** *
7994483 GTCAACATTTTAATCAGAATGAAGTGTTTAGACTAACCATGACATTATAAAAATCGAGGTATC
130 GTCAACAGTTTAATCAGAATGAAGTATTTAGACTAACAATGAAATTATAAAAATCGAAATACC
* *
7994546 GAATTATGTCAAAAATTAAAGTATAAAGATTAAA-TTTAAATTTGAGCATAATATAGGAATCAAA
1 GAATTATGTCAAAAATTAAAGTATAAAGATTAAATTTTAAAATTGAGCATAATATAGGAAGC--A
* * *
7994610 GTTAAAATTTGACCATTATTATATAATCT-AAAAAATAAGTAAAAGATTGTGCATCGGGATATGT
64 ---AAAATTTGACCATTATTATATAATCTCAAAAAAGAAGTAAAAGATCGTGCATCGGGACATGT
* * *
7994674 GTAGGTCAACAGTTTAATCAGAATGAAGTATTTAGACTTACAATGAAATTATAAAAGTCGAAATA
126 GTACGTCAACAGTTTAATCAGAATGAAGTATTTAGACTAACAATGAAATTATAAAAATCGAAATA
7994739 CC
191 CC
*
7994741 AAATTATGTC-AAAATTAAA
1 GAATTATGTCAAAAATTAAA
7994760 TTCAAAACTT
Statistics
Matches: 180, Mismatches: 29, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
191 20 0.11
192 23 0.13
193 11 0.06
194 9 0.05
195 94 0.52
196 23 0.13
ACGTcount: A:0.43, C:0.09, G:0.15, T:0.32
Consensus pattern (192 bp):
GAATTATGTCAAAAATTAAAGTATAAAGATTAAATTTTAAAATTGAGCATAATATAGGAAGCAAA
AATTTGACCATTATTATATAATCTCAAAAAAGAAGTAAAAGATCGTGCATCGGGACATGTGTACG
TCAACAGTTTAATCAGAATGAAGTATTTAGACTAACAATGAAATTATAAAAATCGAAATACC
Found at i:8004300 original size:2 final size:2
Alignment explanation
Indices: 8004293--8004327 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8004283 ATTTGAATTT
8004293 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8004328 TACTTTATAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8004660 original size:91 final size:89
Alignment explanation
Indices: 8004543--8004710 Score: 239
Period size: 91 Copynumber: 1.9 Consensus size: 89
8004533 TAAAAACATA
* ***
8004543 ATTTTTTTTATTTTTTATGTTTTTCAATTTTTAATTTCAACTTTTTA-TTGAATTTTTAAATATT
1 ATTTCTTTTATTTTTTATGTTTTTCAATTTTT--TGAAAACTTTTTATTTGAATTTTTAAATATT
8004607 AAAAATTTCAAAAGTATAAATAATTT
64 AAAAATTTCAAAAGTATAAATAATTT
* *
8004633 ATTTCTTTTATTTTTCTATGTTTTTCAATTTTTTGAAAATTTTTTATTTTGAATTTTTTAATATT
1 ATTTCTTTTATTTTT-TATGTTTTTCAATTTTTTGAAAACTTTTTA-TTTGAATTTTTAAATATT
8004698 AAAAATTTCAAAA
64 AAAAATTTCAAAA
8004711 AAATATAAAT
Statistics
Matches: 69, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
89 9 0.13
90 14 0.20
91 46 0.67
ACGTcount: A:0.33, C:0.05, G:0.04, T:0.59
Consensus pattern (89 bp):
ATTTCTTTTATTTTTTATGTTTTTCAATTTTTTGAAAACTTTTTATTTGAATTTTTAAATATTAA
AAATTTCAAAAGTATAAATAATTT
Found at i:8012136 original size:40 final size:40
Alignment explanation
Indices: 8012086--8012208 Score: 165
Period size: 40 Copynumber: 3.0 Consensus size: 40
8012076 ATAAAACAGG
* *
8012086 AAAACACTTCCTTAAGGAAGCACTTTGTCCACGTGGACAA
1 AAAACGCTTCCTTAAGGAAGCGCTTTGTCCACGTGGACAA
* * *
8012126 AAAACGCTTCCTCAAGGAAGTGCTTTGTCCACGTGGACAG
1 AAAACGCTTCCTTAAGGAAGCGCTTTGTCCACGTGGACAA
* *
8012166 AAAACGCTTCCTTGAGGGAGCGCTTTGTGTCCACGTGGACAA
1 AAAACGCTTCCTTAAGGAAGCGC-TT-TGTCCACGTGGACAA
8012208 A
1 A
8012209 GTGCTTCCTT
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
40 54 0.76
41 2 0.03
42 15 0.21
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (40 bp):
AAAACGCTTCCTTAAGGAAGCGCTTTGTCCACGTGGACAA
Found at i:8013121 original size:90 final size:91
Alignment explanation
Indices: 8012993--8013272 Score: 395
Period size: 90 Copynumber: 3.1 Consensus size: 91
8012983 ACCCTAAATA
*
8012993 CTAAACCCCAATCTAACTTTTTTTAAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTAA
1 CTAAACCCTAATCTAACTTTTTTTAAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTAA
*
8013058 TTTATTTAATTTTTCCCTTAAAAACC
66 TTTATTTAATTTTTTCCTTAAAAACC
*
8013084 CTAAACCCTAATCTAA-TTTTTTTAAAATTTATAATTAATTTACTCAATTAACCCTAAACCCTAA
1 CTAAACCCTAATCTAACTTTTTTTAAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTAA
8013148 TTTATTTAATTTTTTCCTTAAAAACC
66 TTTATTTAATTTTTTCCTTAAAAACC
* * * * * * *
8013174 ATAAACACTAAACCCTAATCTATTTTTTAAAATTTATAATTAGTTTAATTAAGAAACCCTAAACC
1 CTAAACCCT-AA-TCTAA-CT-TTTTTTAAAATTTATAATTAATTTACTCAAGTAACCCTAAACC
*
8013239 CTTATTTATTTAATTTTTTTCCTT--AAACC
62 CTAATTTATTTAA-TTTTTTCCTTAAAAACC
8013268 CTAAA
1 CTAAA
8013273 ATCTAAAAAC
Statistics
Matches: 170, Mismatches: 13, Indels: 9
0.89 0.07 0.05
Matches are distributed among these distances:
90 79 0.46
91 17 0.10
92 4 0.02
94 10 0.06
95 50 0.29
96 10 0.06
ACGTcount: A:0.38, C:0.19, G:0.01, T:0.41
Consensus pattern (91 bp):
CTAAACCCTAATCTAACTTTTTTTAAAATTTATAATTAATTTACTCAAGTAACCCTAAACCCTAA
TTTATTTAATTTTTTCCTTAAAAACC
Found at i:8013336 original size:20 final size:21
Alignment explanation
Indices: 8013294--8013336 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
8013284 CAAAACCCCT
* *
8013294 AAAACCCTAGCTCTAGTAGAAA
1 AAAACCCTAACTCTA-TAAAAA
8013316 AAAACCCTAACTCT-TAAAAA
1 AAAACCCTAACTCTATAAAAA
8013336 A
1 A
8013337 CGGGAAAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 6 0.32
22 13 0.68
ACGTcount: A:0.51, C:0.23, G:0.07, T:0.19
Consensus pattern (21 bp):
AAAACCCTAACTCTATAAAAA
Found at i:8024419 original size:23 final size:24
Alignment explanation
Indices: 8024393--8024448 Score: 69
Period size: 26 Copynumber: 2.3 Consensus size: 24
8024383 TGTATATATA
*
8024393 AATTTTTTT-ATAATGTTAGAAAT
1 AATTTTTTTAAGAATGTTAGAAAT
8024416 AATTTTTTTTAAAGAATGTTAGAAAT
1 AA-TTTTTTT-AAGAATGTTAGAAAT
*
8024442 AGTTTTT
1 AATTTTT
8024449 GAATGTTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 2 0.07
24 7 0.25
25 5 0.18
26 14 0.50
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.52
Consensus pattern (24 bp):
AATTTTTTTAAGAATGTTAGAAAT
Found at i:8025536 original size:19 final size:18
Alignment explanation
Indices: 8025512--8025551 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8025502 TAAATAAATA
8025512 TATTATATAAATTATTTTT
1 TATTATA-AAATTATTTTT
* *
8025531 TATTATAAACTTTTTTTT
1 TATTATAAAATTATTTTT
8025549 TAT
1 TAT
8025552 AATTTTAGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (18 bp):
TATTATAAAATTATTTTT
Found at i:8025537 original size:17 final size:18
Alignment explanation
Indices: 8025517--8025551 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8025507 AAATATATTA
8025517 TATAAA-TTATTTTTTAT
1 TATAAACTTATTTTTTAT
*
8025534 TATAAACTTTTTTTTTAT
1 TATAAACTTATTTTTTAT
8025552 AATTTTAGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (18 bp):
TATAAACTTATTTTTTAT
Found at i:8029624 original size:226 final size:225
Alignment explanation
Indices: 8029230--8029683 Score: 746
Period size: 226 Copynumber: 2.0 Consensus size: 225
8029220 AACTATCCAT
* *
8029230 TCAAGAAGGCTCAATATACTGCCAATCAATGAGAAAATATTATATTGGGGTACTCGGGGAACTCG
1 TCAAGAAGGCTCAATATACCGCCAATCAATGAGAAAATATTATATTAGGGTACTCGGGGAACTCG
* * * **
8029295 AACGCATGCGACGCATCAGGATTTATGCTCGACATGTGCGCTTCAGGGTCATTGTGTATGACAAT
66 AACACATGCGACACATCAAGATTTACACTCGACATGTGCGCTTCAGGGTCATTGTGTATGACAAT
** * *
8029360 GCCATGACTCGGGTTCTTGATCAAAGGGGCGTAAACATTTTCATCATCATCCACACCTTCGTCAT
131 GCCACAACCCGGGTTCTTGATCAAAGGGGCGTAAACATTTTCATCATAATCCACACCTTCGTCAT
8029425 CGATATCATCTGGGACCTAAAATCTTCACCC
196 CGATATCA-CTGGGACCTAAAATCTTCACCC
* * * *
8029456 TCAAGAAGGCTCGATATGCCGCCAATCAATGAGCAAATATTATATTAGGGTACTTGGGGAACTCG
1 TCAAGAAGGCTCAATATACCGCCAATCAATGAGAAAATATTATATTAGGGTACTCGGGGAACTCG
8029521 AACACATGCGACACATCAAGATTTACACTCGACATGTGCGCTTCAGGGTCATTGTGTATGACAAT
66 AACACATGCGACACATCAAGATTTACACTCGACATGTGCGCTTCAGGGTCATTGTGTATGACAAT
*
8029586 GCCACAACCCGGGTTCTTGATCAAAGGGGCGTAAACATTTTCATCATAATCCACACCTTCGTCGT
131 GCCACAACCCGGGTTCTTGATCAAAGGGGCGTAAACATTTTCATCATAATCCACACCTTCGTCAT
*
8029651 TGATATCACTGGGACCTAAAATCTTCACCC
196 CGATATCACTGGGACCTAAAATCTTCACCC
8029681 TCA
1 TCA
8029684 TTATCAAAAT
Statistics
Matches: 211, Mismatches: 17, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
225 25 0.12
226 186 0.88
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.26
Consensus pattern (225 bp):
TCAAGAAGGCTCAATATACCGCCAATCAATGAGAAAATATTATATTAGGGTACTCGGGGAACTCG
AACACATGCGACACATCAAGATTTACACTCGACATGTGCGCTTCAGGGTCATTGTGTATGACAAT
GCCACAACCCGGGTTCTTGATCAAAGGGGCGTAAACATTTTCATCATAATCCACACCTTCGTCAT
CGATATCACTGGGACCTAAAATCTTCACCC
Found at i:8030836 original size:50 final size:54
Alignment explanation
Indices: 8030706--8030854 Score: 198
Period size: 50 Copynumber: 2.8 Consensus size: 54
8030696 ATTTGGGTAA
* * *
8030706 AGAGATCCCATGTAAGACCATGTCTGGGATATTGCATTGGCATCCTTGAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC-TGAGATCA-G
* *
8030762 AGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GAGA-C-G
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTGAGATCAG
*
8030812 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
8030855 GTTATGATCA
Statistics
Matches: 85, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
50 41 0.48
52 1 0.01
53 4 0.05
55 2 0.02
56 37 0.44
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (54 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTGAGATCAG
Found at i:8033279 original size:5 final size:5
Alignment explanation
Indices: 8033271--8033331 Score: 81
Period size: 5 Copynumber: 12.0 Consensus size: 5
8033261 ATATATATTA
8033271 TATAT TATAT TAT-T TA-AT TAATAAGT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT T-AT-A-T TATAT TATAT TATAT TATAT
8033317 TATAT TATAT TATAT
1 TATAT TATAT TATAT
8033332 AAAACAAATG
Statistics
Matches: 51, Mismatches: 0, Indels: 10
0.84 0.00 0.16
Matches are distributed among these distances:
4 5 0.10
5 40 0.78
6 1 0.02
7 3 0.06
8 2 0.04
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (5 bp):
TATAT
Found at i:8034495 original size:22 final size:24
Alignment explanation
Indices: 8034390--8034494 Score: 115
Period size: 25 Copynumber: 4.3 Consensus size: 24
8034380 AACTTAGCGC
*
8034390 GCTCTCTGATTTTTAGCACGTTAGT
1 GCTCTCTGA-TATTAGCACGTTAGT
*
8034415 GCTCTCTGACTATTAGCACGTTGGT
1 GCTCTCTGA-TATTAGCACGTTAGT
* * *
8034440 GCTCTTTGATATTTAGCATGTCAGT
1 GCTCTCTGATA-TTAGCACGTTAGT
*
8034465 GCTCTCTG-TA-TAGCACTTTAGT
1 GCTCTCTGATATTAGCACGTTAGT
8034487 GCTCTCTG
1 GCTCTCTG
8034495 TTCATTAGTG
Statistics
Matches: 68, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
22 17 0.25
24 4 0.06
25 47 0.69
ACGTcount: A:0.16, C:0.22, G:0.21, T:0.41
Consensus pattern (24 bp):
GCTCTCTGATATTAGCACGTTAGT
Found at i:8040279 original size:12 final size:12
Alignment explanation
Indices: 8040262--8040286 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8040252 ATATTCTTTT
8040262 ATAAAATAAAAA
1 ATAAAATAAAAA
8040274 ATAAAATAAAAA
1 ATAAAATAAAAA
8040286 A
1 A
8040287 GGACCCGAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
ATAAAATAAAAA
Found at i:8045685 original size:23 final size:23
Alignment explanation
Indices: 8045653--8045698 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
8045643 TTCTTACATT
*
8045653 GTAAATCGTTAAAAATATTGGTA
1 GTAAACCGTTAAAAATATTGGTA
*
8045676 GTAAACCGTTAGAAATATTGGTA
1 GTAAACCGTTAAAAATATTGGTA
8045699 AATCGTTAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.41, C:0.07, G:0.20, T:0.33
Consensus pattern (23 bp):
GTAAACCGTTAAAAATATTGGTA
Found at i:8045705 original size:20 final size:20
Alignment explanation
Indices: 8045653--8045720 Score: 73
Period size: 20 Copynumber: 3.2 Consensus size: 20
8045643 TTCTTACATT
*
8045653 GTAAATCGTTAAAAATATTGG
1 GTAAATCGTTAGAAATATT-G
*
8045674 TAGTAAACCGTTAGAAATATTG
1 --GTAAATCGTTAGAAATATTG
* *
8045696 GTAAATCGTTAGATATTTTG
1 GTAAATCGTTAGAAATATTG
8045716 GTAAA
1 GTAAA
8045721 AGCTTTTACT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
20 22 0.55
22 1 0.03
23 17 0.43
ACGTcount: A:0.40, C:0.06, G:0.19, T:0.35
Consensus pattern (20 bp):
GTAAATCGTTAGAAATATTG
Found at i:8050036 original size:2 final size:2
Alignment explanation
Indices: 8050029--8050055 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8050019 TTTTTCTTTT
8050029 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
8050056 TTTCTCTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:8050614 original size:19 final size:19
Alignment explanation
Indices: 8050590--8050628 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
8050580 TATGTATATA
*
8050590 ATCGAAACTAAATTAAAAT
1 ATCGAAACCAAATTAAAAT
*
8050609 ATCGAACCCAAATTAAAAT
1 ATCGAAACCAAATTAAAAT
8050628 A
1 A
8050629 ATTTTGAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.56, C:0.15, G:0.05, T:0.23
Consensus pattern (19 bp):
ATCGAAACCAAATTAAAAT
Found at i:8058774 original size:21 final size:21
Alignment explanation
Indices: 8058748--8058804 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
8058738 ATTTGGTAGA
*
8058748 AAAACATATATGAACATATTT
1 AAAACACATATGAACATATTT
*
8058769 AAAACAAGATAT-AACATATTT
1 AAAAC-ACATATGAACATATTT
8058790 AAAACACA-ATGAACA
1 AAAACACATATGAACA
8058805 CATACAAAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 2 0.06
20 6 0.19
21 19 0.59
22 5 0.16
ACGTcount: A:0.58, C:0.12, G:0.05, T:0.25
Consensus pattern (21 bp):
AAAACACATATGAACATATTT
Found at i:8063119 original size:13 final size:12
Alignment explanation
Indices: 8063060--8063119 Score: 57
Period size: 13 Copynumber: 4.5 Consensus size: 12
8063050 ATACAATATC
8063060 AATAATTTTAAA
1 AATAATTTTAAA
*
8063072 ATATAATTTAAATA
1 A-ATAATTTTAA-A
8063086 AATTAAATTTTAAA
1 AA-T-AATTTTAAA
8063100 AACTAATTTTAAA
1 AA-TAATTTTAAA
8063113 TAATAAT
1 -AATAAT
8063120 CATAATTTAA
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
12 1 0.03
13 23 0.57
14 9 0.22
15 7 0.17
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (12 bp):
AATAATTTTAAA
Found at i:8070262 original size:51 final size:49
Alignment explanation
Indices: 8070176--8070326 Score: 178
Period size: 51 Copynumber: 3.0 Consensus size: 49
8070166 TTGAATAGGT
* *
8070176 TTCCATCAAATCAT-AAAGAGACTTGTTTTATCATTTCAGTTATCAGGC
1 TTCCATCAAATCATGAAAGAGACTTGTTTTATCATTTCAGTCATCAAGC
* * * * *
8070224 TTCCATCAACTCATGCAAACAGACTTGTTTTTATCATTTCAGTCGTTAAAC
1 TTCCATCAAATCATG-AAAGAGACTTG-TTTTATCATTTCAGTCATCAAGC
* * *
8070275 TTCCATCAAATCATGTAGAGAGACTTGTTTTATCATCTCAGCCATCAAGC
1 TTCCATCAAATCATG-AAAGAGACTTGTTTTATCATTTCAGTCATCAAGC
8070325 TT
1 TT
8070327 TTATCAACTC
Statistics
Matches: 84, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
48 13 0.15
50 30 0.36
51 41 0.49
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.36
Consensus pattern (49 bp):
TTCCATCAAATCATGAAAGAGACTTGTTTTATCATTTCAGTCATCAAGC
Found at i:8070345 original size:50 final size:50
Alignment explanation
Indices: 8070176--8070345 Score: 166
Period size: 50 Copynumber: 3.4 Consensus size: 50
8070166 TTGAATAGGT
* * * *
8070176 TTCCATCAAATCA-T-AAAGAGACTTGTTTTATCATTTCAGTTATCAGGC
1 TTCCATCAACTCATTCAGAGAGACTTGTTTTATCATTTCAGTCATCAAGC
* * * * * *
8070224 TTCCATCAACTCATGCAAACAGACTTGTTTTTATCATTTCAGTCGTTAAAC
1 TTCCATCAACTCATTCAGAGAGACTTG-TTTTATCATTTCAGTCATCAAGC
* * *
8070275 TTCCATCAAATCATGT-AGAGAGACTTGTTTTATCATCTCAGCCATCAAGC
1 TTCCATCAACTCAT-TCAGAGAGACTTGTTTTATCATTTCAGTCATCAAGC
**
8070325 TTTTATCAACTCATTCAGAGA
1 TTCCATCAACTCATTCAGAGA
8070346 CTTATTTTGT
Statistics
Matches: 97, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
48 12 0.12
49 1 0.01
50 44 0.45
51 40 0.41
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.36
Consensus pattern (50 bp):
TTCCATCAACTCATTCAGAGAGACTTGTTTTATCATTTCAGTCATCAAGC
Found at i:8071792 original size:20 final size:20
Alignment explanation
Indices: 8071751--8071793 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
8071741 TAAAAAATCA
* *
8071751 AAAGTATCGATACCTTTAAC
1 AAAGTATCAATACCTCTAAC
*
8071771 AAAGTATCAATACCTCTGAC
1 AAAGTATCAATACCTCTAAC
8071791 AAA
1 AAA
8071794 AGAACCGATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.44, C:0.21, G:0.09, T:0.26
Consensus pattern (20 bp):
AAAGTATCAATACCTCTAAC
Found at i:8074529 original size:23 final size:22
Alignment explanation
Indices: 8074486--8074529 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
8074476 TTCTAAGTCG
8074486 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
8074509 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
8074530 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:8074646 original size:45 final size:45
Alignment explanation
Indices: 8074577--8074662 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
8074567 AGATACTCGG
* *
8074577 TGGATTCAACACATAGCAACCACCTTATTAATCAATGATGTCAAA
1 TGGAATCAACACATAGCAACCACCTTACTAATCAATGATGTCAAA
8074622 TGGAATCAACACATAGCAACCACCTTACTAATCAATGATGT
1 TGGAATCAACACATAGCAACCACCTTACTAATCAATGATGT
8074663 TCGGTTCACA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.40, C:0.23, G:0.12, T:0.26
Consensus pattern (45 bp):
TGGAATCAACACATAGCAACCACCTTACTAATCAATGATGTCAAA
Found at i:8074788 original size:50 final size:50
Alignment explanation
Indices: 8074664--8074800 Score: 143
Period size: 50 Copynumber: 2.7 Consensus size: 50
8074654 CAATGATGTT
* * *
8074664 CGGTTCACATAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATC
1 CGGTACACATAGTAGCCTGCACATAGTACTACACAC-TGAACCAAACTATC
* * * * *
8074715 CGGTACGCATAATAGCTTGCACATAGTACTACACA-TGCAACCTATC-ATTC
1 CGGTACACATAGTAGCCTGCACATAGTACTACACACTG-AACCAAACTA-TC
* *
8074765 CGGTACACGTAGTAGCCTGCACATAATACTACACAC
1 CGGTACACATAGTAGCCTGCACATAGTACTACACAC
8074801 GTGACCATCA
Statistics
Matches: 70, Mismatches: 13, Indels: 6
0.79 0.15 0.07
Matches are distributed among these distances:
49 3 0.04
50 36 0.51
51 31 0.44
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.23
Consensus pattern (50 bp):
CGGTACACATAGTAGCCTGCACATAGTACTACACACTGAACCAAACTATC
Found at i:8076333 original size:23 final size:23
Alignment explanation
Indices: 8076300--8076351 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 23
8076290 ATAAGTGCCA
* *
8076300 CACTGATATGTAGTCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
8076323 CACTGAAATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
8076346 CACTGA
1 CACTGA
8076352 TCAATAACAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGAAATGTAGCCGAAGCTAC
Found at i:8076604 original size:18 final size:17
Alignment explanation
Indices: 8076578--8076616 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
8076568 ATTTTCCTTC
8076578 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
8076595 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
8076613 CACA
1 CACA
8076617 ATTTATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:8079025 original size:12 final size:12
Alignment explanation
Indices: 8079008--8079032 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8078998 TGTATTTACG
8079008 AAAAAAACAAAA
1 AAAAAAACAAAA
8079020 AAAAAAACAAAA
1 AAAAAAACAAAA
8079032 A
1 A
8079033 CCCCCGTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAACAAAA
Found at i:8079228 original size:34 final size:34
Alignment explanation
Indices: 8079162--8079230 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 34
8079152 GTTTAATTAG
* * **
8079162 AAACTTTTATCATACTTTTTATCAAAAAAAAAAA
1 AAACTTTTACCATACTTTATAAAAAAAAAAAAAA
*
8079196 AAACTTTTACCATAC-TTATAAAAAAAATAAAAA
1 AAACTTTTACCATACTTTATAAAAAAAAAAAAAA
8079229 AA
1 AA
8079231 TAATCATGGC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
33 16 0.53
34 14 0.47
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.30
Consensus pattern (34 bp):
AAACTTTTACCATACTTTATAAAAAAAAAAAAAA
Found at i:8079826 original size:18 final size:19
Alignment explanation
Indices: 8079783--8079819 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8079773 AAAATCAAAA
*
8079783 AAATATAATAAAAATGTTT
1 AAATATTATAAAAATGTTT
*
8079802 AAATATTATAAAAGTGTT
1 AAATATTATAAAAATGTT
8079820 ATATATTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (19 bp):
AAATATTATAAAAATGTTT
Found at i:8081128 original size:4 final size:4
Alignment explanation
Indices: 8081119--8081148 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
8081109 TCAGTATACC
8081119 AAAT AAAT AAAT AAAT AAAT AAAT -AAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
8081149 GACATACTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 22 0.88
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:8087877 original size:28 final size:28
Alignment explanation
Indices: 8087833--8087895 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 28
8087823 AATTTGAAGG
8087833 AAAAAAATATTAGATTTT-TTCTAGTGAT
1 AAAAAAATATTAGATTTTATTC-AGTGAT
* **
8087861 AAAAAAA-ATTATTATTTTATTCAGTTCT
1 AAAAAAATATTA-GATTTTATTCAGTGAT
8087889 AAAAAAA
1 AAAAAAA
8087896 CAGTGGACTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 4 0.13
28 23 0.77
29 3 0.10
ACGTcount: A:0.49, C:0.05, G:0.06, T:0.40
Consensus pattern (28 bp):
AAAAAAATATTAGATTTTATTCAGTGAT
Found at i:8102094 original size:12 final size:12
Alignment explanation
Indices: 8102076--8102106 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
8102066 TAAAGACTTA
8102076 AAAATAAAAAAT
1 AAAATAAAAAAT
*
8102088 TAAATAAAAAAT
1 AAAATAAAAAAT
8102100 AAAATAA
1 AAAATAA
8102107 TTTTTTAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (12 bp):
AAAATAAAAAAT
Found at i:8119062 original size:18 final size:18
Alignment explanation
Indices: 8119039--8119073 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
8119029 CCCAGCCGTC
8119039 TTCTCATTTCTTTCTCAT
1 TTCTCATTTCTTTCTCAT
8119057 TTCTCATTTCTTTCTCA
1 TTCTCATTTCTTTCTCA
8119074 CGTCCGAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.29, G:0.00, T:0.60
Consensus pattern (18 bp):
TTCTCATTTCTTTCTCAT
Found at i:8121014 original size:18 final size:17
Alignment explanation
Indices: 8120986--8121020 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8120976 ATTATTAAGA
*
8120986 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
8121003 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
8121021 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:8121250 original size:44 final size:45
Alignment explanation
Indices: 8121185--8121275 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
8121175 ACCTCTATTC
* * *
8121185 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
8121229 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
8121274 CA
1 CA
8121276 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:8121277 original size:16 final size:16
Alignment explanation
Indices: 8121256--8121324 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
8121246 GATTAGCTAT
8121256 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
8121272 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
8121289 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
8121305 TACACCTATAATCCAA
1 TACACCTCTAATCCAA
8121321 TACA
1 TACA
8121325 GCGAACCAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
16 35 0.69
17 16 0.31
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:8121298 original size:33 final size:32
Alignment explanation
Indices: 8121256--8121324 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
8121246 GATTAGCTAT
*
8121256 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTATAAT-CCAA
8121289 TACACCTCTAATCCAATACACCTATAATCCAA
1 TACACCTCTAATCCAATACACCTATAATCCAA
8121321 TACA
1 TACA
8121325 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.39, C:0.36, G:0.00, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTATAATCCAA
Found at i:8139695 original size:3 final size:3
Alignment explanation
Indices: 8139687--8139754 Score: 127
Period size: 3 Copynumber: 22.7 Consensus size: 3
8139677 AATAAATAGG
*
8139687 TAA TAA TAA TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8139735 TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TA
8139755 GGACTAATTC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:8140206 original size:9 final size:9
Alignment explanation
Indices: 8140192--8140216 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
8140182 AACAAATAGA
8140192 AAAAAAAAT
1 AAAAAAAAT
8140201 AAAAAAAAT
1 AAAAAAAAT
8140210 AAAAAAA
1 AAAAAAA
8140217 CAACAAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:8141288 original size:48 final size:48
Alignment explanation
Indices: 8141228--8141386 Score: 140
Period size: 48 Copynumber: 3.3 Consensus size: 48
8141218 GTGAGGTTCG
*
8141228 CCGTTGTAGCTTCAATCTGTTCCATTGCATCGCCAAAAATAAGATTCA
1 CCGTTGTAGCTTCAATCTGTTCCATTGCATCGCCAAAAGTAAGATTCA
* * * ** * * * *
8141276 CCGTTGTGGCTTCGATCTTTTAAATTGCAAT-GTCGAGGAAGTGAGATTCG
1 CCGTTGTAGCTTCAATCTGTTCCATTGC-ATCG-CCA-AAAGTAAGATTCA
* * * * *
8141326 CTGTTGTAGCTTCAATCTGCTCCACTGCATCGCCAAGAGTAAGATTTA
1 CCGTTGTAGCTTCAATCTGTTCCATTGCATCGCCAAAAGTAAGATTCA
*
8141374 CCGTTGTGGCTTC
1 CCGTTGTAGCTTC
8141387 GACCTTTTAA
Statistics
Matches: 81, Mismatches: 26, Indels: 8
0.70 0.23 0.07
Matches are distributed among these distances:
48 43 0.53
49 8 0.10
50 30 0.37
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.33
Consensus pattern (48 bp):
CCGTTGTAGCTTCAATCTGTTCCATTGCATCGCCAAAAGTAAGATTCA
Found at i:8141295 original size:98 final size:98
Alignment explanation
Indices: 8141122--8141697 Score: 877
Period size: 98 Copynumber: 5.9 Consensus size: 98
8141112 GCCGAGGAAA
* * * *
8141122 AGATTCGCTGTTG-AGGCTTCAATCTGTTCCGCTGCGTCGCCTGGAAGTAAGATTCGCCGTTGTG
1 AGATTCGCTGTTGTA-GCTTCAATCTGCTCCGCTGCATCGCC-AGAAGTAAGATTCGCCGCTGTG
8141186 GCTTCGATCTTTTAAATTGCAATGTCGGGGAAGTG
64 GCTTCGATCTTTTAAATTGCAATGTCGGGGAAGTG
* * * ** * * * *
8141221 AGGTTCGCCGTTGTAGCTTCAATCTGTTCCATTGCATCGCCAAAAATAAGATTCACCGTTGTGGC
1 AGATTCGCTGTTGTAGCTTCAATCTGCTCCGCTGCATCGCCAGAAGTAAGATTCGCCGCTGTGGC
*
8141286 TTCGATCTTTTAAATTGCAATGTCGAGGAAGTG
66 TTCGATCTTTTAAATTGCAATGTCGGGGAAGTG
* ** *
8141319 AGATTCGCTGTTGTAGCTTCAATCTGCTCCACTGCATCGCCA-AGAGTAAGATTTACCGTTGTGG
1 AGATTCGCTGTTGTAGCTTCAATCTGCTCCGCTGCATCGCCAGA-AGTAAGATTCGCCGCTGTGG
*
8141383 CTTCGACCTTTTAAATTGCAATGTCGGGGAAGTG
65 CTTCGATCTTTTAAATTGCAATGTCGGGGAAGTG
* * *
8141417 AGATTCGTTGTTGTAGCTTCAATCTGCTCCGCTGTATCGCCAGAAGTAAGATTCGCTGCTGTGGC
1 AGATTCGCTGTTGTAGCTTCAATCTGCTCCGCTGCATCGCCAGAAGTAAGATTCGCCGCTGTGGC
*
8141482 TTCAATCTTTTAAATTGCAATGTCGGGGAAGTG
66 TTCGATCTTTTAAATTGCAATGTCGGGGAAGTG
*
8141515 AGATTCGCTGTTGTAGCTTCAATCTGCTCCGCTGCGTCGCCAGAAGTAAGATTCGCCGCTGTGGC
1 AGATTCGCTGTTGTAGCTTCAATCTGCTCCGCTGCATCGCCAGAAGTAAGATTCGCCGCTGTGGC
8141580 TTCGATCTTTTAAATTGCAATGTCGGGGAAGTG
66 TTCGATCTTTTAAATTGCAATGTCGGGGAAGTG
* *
8141613 AGATTCGCTGTTGTAGCTTCAATCTGCTCCGTTGCATCGCCAGAAGTAAGATTCGCCACTGTGGC
1 AGATTCGCTGTTGTAGCTTCAATCTGCTCCGCTGCATCGCCAGAAGTAAGATTCGCCGCTGTGGC
8141678 TTCGATCTTTTAAATTGCAA
66 TTCGATCTTTTAAATTGCAA
8141698 ACTATGGTTT
Statistics
Matches: 439, Mismatches: 35, Indels: 7
0.91 0.07 0.01
Matches are distributed among these distances:
97 1 0.00
98 402 0.92
99 35 0.08
100 1 0.00
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.32
Consensus pattern (98 bp):
AGATTCGCTGTTGTAGCTTCAATCTGCTCCGCTGCATCGCCAGAAGTAAGATTCGCCGCTGTGGC
TTCGATCTTTTAAATTGCAATGTCGGGGAAGTG
Found at i:8141680 original size:48 final size:48
Alignment explanation
Indices: 8141411--8141685 Score: 185
Period size: 48 Copynumber: 5.6 Consensus size: 48
8141401 CAATGTCGGG
* * * * * *
8141411 GAAGTGAGATTCGTTGTTGTAGCTTCAATCTGCTCCGCTGTATCGCCA
1 GAAGTAAGATTCGCTGCTGTGGCTTCAATCTGCTCCGTTGCATCGCCA
** *** **
8141459 GAAGTAAGATTCGCTGCTGTGGCTTCAATCTTTTAAATTGCAAT-GTCGGG
1 GAAGTAAGATTCGCTGCTGTGGCTTCAATCTGCTCCGTTGC-ATCG-C-CA
* * * * *
8141509 GAAGTGAGATTCGCTGTTGTAGCTTCAATCTGCTCCGCTGCGTCGCCA
1 GAAGTAAGATTCGCTGCTGTGGCTTCAATCTGCTCCGTTGCATCGCCA
* * ** *** **
8141557 GAAGTAAGATTCGCCGCTGTGGCTTCGATCTTTTAAATTGCAAT-GTCGGG
1 GAAGTAAGATTCGCTGCTGTGGCTTCAATCTGCTCCGTTGC-ATCG-C-CA
* * *
8141607 GAAGTGAGATTCGCTGTTGTAGCTTCAATCTGCTCCGTTGCATCGCCA
1 GAAGTAAGATTCGCTGCTGTGGCTTCAATCTGCTCCGTTGCATCGCCA
** *
8141655 GAAGTAAGATTCGCCACTGTGGCTTCGATCT
1 GAAGTAAGATTCGCTGCTGTGGCTTCAATCT
8141686 TTTAAATTGC
Statistics
Matches: 162, Mismatches: 57, Indels: 16
0.69 0.24 0.07
Matches are distributed among these distances:
48 87 0.54
49 10 0.06
50 65 0.40
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.32
Consensus pattern (48 bp):
GAAGTAAGATTCGCTGCTGTGGCTTCAATCTGCTCCGTTGCATCGCCA
Found at i:8154509 original size:3 final size:3
Alignment explanation
Indices: 8154501--8154547 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
8154491 AATAAATAGG
*
8154501 TAA TAA TAA TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
8154548 GGACTAATTC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:8158706 original size:48 final size:45
Alignment explanation
Indices: 8158654--8158757 Score: 111
Period size: 48 Copynumber: 2.2 Consensus size: 45
8158644 ATAGTGTTTG
*
8158654 GTTACCTGTTTGGGTTAAACCTACACGAATAATGAATTATAGTGCCTA
1 GTTACCTGTTT-GGTTAAACCTACACGAAT--TGAATAATAGTGCCTA
* * *
8158702 GTTACCCT-TCCTGGTTAAACCTACATGAATTGAATAATAGTGCCTG
1 GTTA-CCTGT-TTGGTTAAACCTACACGAATTGAATAATAGTGCCTA
*
8158748 GTCACCTGTT
1 GTTACCTGTT
8158758 ATGTAACGCC
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
45 3 0.06
46 18 0.38
48 22 0.47
49 4 0.09
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (45 bp):
GTTACCTGTTTGGTTAAACCTACACGAATTGAATAATAGTGCCTA
Found at i:8160204 original size:75 final size:75
Alignment explanation
Indices: 8160069--8160215 Score: 177
Period size: 75 Copynumber: 2.0 Consensus size: 75
8160059 TAACCGACAG
* * * * *
8160069 TATTGAATGTGATCCCAACTCTCGTTGGATAAACCAACAATGTTTGTGCCCAACATTAGTCGGAT
1 TATTAAATGTGAGCCCAACTCTAGTTGGATAAACCAACAATGTTTGCGCCCAACACTAGTCGGAT
*
8160134 ATACCGATGA
66 AAACCGATGA
* * * * ***
8160144 TATTAAATGTGAGCCCAACTCTAGTTGGATGAACCAACAGTGTTTGCGTCTAGTGCTAGTCGGAT
1 TATTAAATGTGAGCCCAACTCTAGTTGGATAAACCAACAATGTTTGCGCCCAACACTAGTCGGAT
8160209 AAACCGA
66 AAACCGA
8160216 CGATTGTGTG
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
75 59 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (75 bp):
TATTAAATGTGAGCCCAACTCTAGTTGGATAAACCAACAATGTTTGCGCCCAACACTAGTCGGAT
AAACCGATGA
Found at i:8165231 original size:134 final size:132
Alignment explanation
Indices: 8165074--8165342 Score: 448
Period size: 134 Copynumber: 2.0 Consensus size: 132
8165064 CTATACATAT
*
8165074 ACAAAAAATATATATATTTACATTCTCAATGTCATGCTCATACTATCTACCATACAATTCCGACA
1 ACAAAAAATATATATACTTACATTCTCAATGTCATGCTCATACTATCTACCATACAATTCCGACA
* ** *
8165139 ACTCGAACAAGTTCCATGATTTCTCAACCAGTTATCTATGCAACTAAAATGAAAAACATGTTCGG
66 AATCGAACAAGTTAAATGATTTCTCAACCAGTTATCTATGCAACTAAAATGAAAAACATGTTCGC
8165204 AA
131 AA
*
8165206 ACAAAAAGTATATATATACTTACATTCTCAATGTCATGCTCATACTATCTACTATACAATTCCGA
1 ACAAAAA--ATATATATACTTACATTCTCAATGTCATGCTCATACTATCTACCATACAATTCCGA
* *
8165271 CAAATCGGACAAGTTAAATGTTTTCTCAACCAGTTATCTATGCAACTAAAATGAAAAACATGTTC
64 CAAATCGAACAAGTTAAATGATTTCTCAACCAGTTATCTATGCAACTAAAATGAAAAACATGTTC
8165336 GCAA
129 GCAA
8165340 ACA
1 ACA
8165343 GGGAAAACCC
Statistics
Matches: 127, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
132 7 0.06
134 120 0.94
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (132 bp):
ACAAAAAATATATATACTTACATTCTCAATGTCATGCTCATACTATCTACCATACAATTCCGACA
AATCGAACAAGTTAAATGATTTCTCAACCAGTTATCTATGCAACTAAAATGAAAAACATGTTCGC
AA
Found at i:8166796 original size:2 final size:2
Alignment explanation
Indices: 8166785--8166815 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
8166775 TGGTTCTTAT
8166785 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8166816 CCTTTAATTG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:8170011 original size:21 final size:19
Alignment explanation
Indices: 8169982--8170048 Score: 59
Period size: 21 Copynumber: 3.4 Consensus size: 19
8169972 TTTTATATAA
*
8169982 ATTACAAATTCATAAAAAATT
1 ATTAGAAATT-ATAAAAAA-T
8170003 ATTAGAAATTTATAAAAAAAT
1 ATTAGAAA-TTAT-AAAAAAT
8170024 ATTTA-AAA-TATAAAAAAT
1 A-TTAGAAATTATAAAAAAT
8170042 A-TAGAAA
1 ATTAGAAA
8170049 ATTTTTAAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
16 2 0.05
17 3 0.07
18 8 0.20
19 3 0.07
21 14 0.34
22 11 0.27
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (19 bp):
ATTAGAAATTATAAAAAAT
Found at i:8170049 original size:28 final size:28
Alignment explanation
Indices: 8170013--8170090 Score: 68
Period size: 28 Copynumber: 2.8 Consensus size: 28
8170003 ATTAGAAATT
*
8170013 TATAAAAAAATATTTAAAATATAAAAAA
1 TATAGAAAAATATTTAAAATATAAAAAA
* * **
8170041 TATAG-AAAATTTTTAAATGTATAAAATT
1 TATAGAAAAATATTTAAA-ATATAAAAAA
* **
8170069 TTTAGAAAAATATAGAAAATAT
1 TATAGAAAAATATTTAAAATAT
8170091 TATACAATTT
Statistics
Matches: 38, Mismatches: 10, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
27 11 0.29
28 18 0.47
29 9 0.24
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (28 bp):
TATAGAAAAATATTTAAAATATAAAAAA
Found at i:8170058 original size:17 final size:17
Alignment explanation
Indices: 8170038--8170072 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8170028 AAAATATAAA
8170038 AAATATAGAAAATTTTT
1 AAATATAGAAAATTTTT
* *
8170055 AAATGTATAAAATTTTT
1 AAATATAGAAAATTTTT
8170072 A
1 A
8170073 GAAAAATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (17 bp):
AAATATAGAAAATTTTT
Found at i:8170119 original size:31 final size:31
Alignment explanation
Indices: 8170060--8170126 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
8170050 TTTTTAAATG
8170060 TATAAAATTTTTAGAAAAATATAGAAAATAT
1 TATAAAATTTTTAGAAAAATATAGAAAATAT
* * *
8170091 TATACAATTTTTTGAAAAATAT-CAAAA-AT
1 TATAAAATTTTTAGAAAAATATAGAAAATAT
8170120 TATAAAA
1 TATAAAA
8170127 AAGCATAGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 8 0.25
30 4 0.12
31 20 0.62
ACGTcount: A:0.57, C:0.03, G:0.04, T:0.36
Consensus pattern (31 bp):
TATAAAATTTTTAGAAAAATATAGAAAATAT
Found at i:8175004 original size:17 final size:17
Alignment explanation
Indices: 8174982--8175014 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8174972 AAAATTGTAT
*
8174982 ATTCTTCTTTTGGTTTG
1 ATTCTTCTTTAGGTTTG
8174999 ATTCTTCTTTAGGTTT
1 ATTCTTCTTTAGGTTT
8175015 TCAAGCAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.09, C:0.12, G:0.15, T:0.64
Consensus pattern (17 bp):
ATTCTTCTTTAGGTTTG
Found at i:8181083 original size:30 final size:30
Alignment explanation
Indices: 8181047--8181103 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
8181037 TTGAAATTTG
* *
8181047 GCAACAATTCAGCAGCATGCAAGTGTCCAA
1 GCAACAATACAGCAGCATGCAAATGTCCAA
8181077 GCAACAATACAGCAGCATGCAAATGTC
1 GCAACAATACAGCAGCATGCAAATGTC
8181104 GATGGTGTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.39, C:0.26, G:0.19, T:0.16
Consensus pattern (30 bp):
GCAACAATACAGCAGCATGCAAATGTCCAA
Found at i:8184823 original size:3 final size:3
Alignment explanation
Indices: 8184815--8184849 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
8184805 CATGATCAAG
8184815 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
8184850 TAATAATAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:8184854 original size:3 final size:3
Alignment explanation
Indices: 8184848--8184883 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
8184838 CAACAACAAC
8184848 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8184884 GAAAAGATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8185127 original size:8 final size:8
Alignment explanation
Indices: 8185114--8185151 Score: 62
Period size: 8 Copynumber: 5.0 Consensus size: 8
8185104 TGTGAATTAT
8185114 AAAAAATA
1 AAAAAATA
8185122 AAAAAAT-
1 AAAAAATA
8185129 AAAAAAT-
1 AAAAAATA
8185136 AAAAAATA
1 AAAAAATA
8185144 AAAAAATA
1 AAAAAATA
8185152 TAAATATACA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 14 0.48
8 15 0.52
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (8 bp):
AAAAAATA
Found at i:8185132 original size:6 final size:7
Alignment explanation
Indices: 8185112--8185148 Score: 65
Period size: 7 Copynumber: 5.1 Consensus size: 7
8185102 TATGTGAATT
8185112 ATAAAAA
1 ATAAAAA
8185119 ATAAAAAA
1 AT-AAAAA
8185127 ATAAAAA
1 ATAAAAA
8185134 ATAAAAA
1 ATAAAAA
8185141 ATAAAAA
1 ATAAAAA
8185148 A
1 A
8185149 ATATAAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 22 0.76
8 7 0.24
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (7 bp):
ATAAAAA
Found at i:8185259 original size:36 final size:36
Alignment explanation
Indices: 8185219--8185294 Score: 84
Period size: 36 Copynumber: 2.1 Consensus size: 36
8185209 TGAAACATAG
*
8185219 AAAATATATAAAAGTATGT-GTATATATATAT-TTATA
1 AAAAT-TA-AAAAATATGTAGTATATATATATATTATA
* *
8185255 AAAATTAAAAAATGTGTACGTATATGTATATATTATA
1 AAAATTAAAAAATATGTA-GTATATATATATATTATA
8185292 AAA
1 AAA
8185295 CGTATGTATG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
34 8 0.24
35 2 0.06
36 16 0.47
37 8 0.24
ACGTcount: A:0.51, C:0.01, G:0.09, T:0.38
Consensus pattern (36 bp):
AAAATTAAAAAATATGTAGTATATATATATATTATA
Found at i:8197255 original size:42 final size:41
Alignment explanation
Indices: 8197196--8197279 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 41
8197186 AGAAAGCCTA
8197196 CTTTGATAGCCCCATCTAATAAAACATCCCTTCAATACACTC
1 CTTTGATAGCCCCATCTAATAAAACAT-CCTTCAATACACTC
8197238 CTTTGATAGCCCCATCTAATAAAACATCCTTCAATACACTC
1 CTTTGATAGCCCCATCTAATAAAACATCCTTCAATACACTC
8197279 C
1 C
8197280 GCTTCAATTA
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
41 15 0.36
42 27 0.64
ACGTcount: A:0.33, C:0.33, G:0.05, T:0.29
Consensus pattern (41 bp):
CTTTGATAGCCCCATCTAATAAAACATCCTTCAATACACTC
Found at i:8197771 original size:13 final size:13
Alignment explanation
Indices: 8197753--8197779 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8197743 TTTCGGTTTA
8197753 ATTTAAACAATAT
1 ATTTAAACAATAT
8197766 ATTTAAACAATAT
1 ATTTAAACAATAT
8197779 A
1 A
8197780 GTTGTTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (13 bp):
ATTTAAACAATAT
Found at i:8199433 original size:23 final size:23
Alignment explanation
Indices: 8199398--8199442 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
8199388 CCTTATTTAA
**
8199398 TTCAAATTGATTAT-AATATTATT
1 TTCAAATAAATTATCAA-ATTATT
8199421 TTCAAATAAATTATCAAATTAT
1 TTCAAATAAATTATCAAATTAT
8199443 AAAATGACAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.47
Consensus pattern (23 bp):
TTCAAATAAATTATCAAATTATT
Found at i:8202633 original size:29 final size:28
Alignment explanation
Indices: 8202600--8202686 Score: 74
Period size: 28 Copynumber: 3.1 Consensus size: 28
8202590 TCATAAGAAC
8202600 ATTTTATGAAATTATATTTAATAATAATT
1 ATTTTAT-AAATTATATTTAATAATAATT
* * *
8202629 A-TTT-TAAATTGTATTAAATCAT-A-T
1 ATTTTATAAATTATATTTAATAATAATT
* *
8202653 ATTTTAATTAAAATATATTTAATATTAATT
1 ATTTT-A-TAAATTATATTTAATAATAATT
8202683 ATTT
1 ATTT
8202687 CAAATTTTCA
Statistics
Matches: 44, Mismatches: 8, Indels: 11
0.70 0.13 0.17
Matches are distributed among these distances:
24 2 0.05
25 4 0.09
26 14 0.32
27 1 0.02
28 16 0.36
29 2 0.05
30 5 0.11
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (28 bp):
ATTTTATAAATTATATTTAATAATAATT
Found at i:8202783 original size:16 final size:16
Alignment explanation
Indices: 8202762--8202803 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
8202752 TTATTAAATT
*
8202762 ATATATTTTAATTATA
1 ATATATTTTAATAATA
8202778 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
8202793 AT-TATGTTTAA
1 ATATAT-TTTAA
8202804 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:8202788 original size:15 final size:15
Alignment explanation
Indices: 8202753--8202794 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
8202743 TTAAGAATTT
*
8202753 TATTAAATTAT-ATA
1 TATTTAATTATAATA
8202767 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
8202781 TATTTAATAATAAT
1 TATTTAATTATAAT
8202795 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:8202976 original size:156 final size:157
Alignment explanation
Indices: 8202738--8203045 Score: 564
Period size: 156 Copynumber: 2.0 Consensus size: 157
8202728 TAAGAATATG
*
8202738 AATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
* * *
8202803 AATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAAT
66 AATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
8202868 AATAATTTACCAAAACAAATTTCTGCT
131 AATAATTTACCAAAACAAATTTCTGCT
8202895 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATA-ATTTAATAATAATTATGTTTA
1 AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
8202959 AATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
66 AATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
*
8203024 AATCATTTACCAAAACAAATTT
131 AATAATTTACCAAAACAAATTT
8203046 ATGGTAAGGG
Statistics
Matches: 146, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
156 104 0.71
157 42 0.29
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (157 bp):
AATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
AATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
AATAATTTACCAAAACAAATTTCTGCT
Found at i:8203199 original size:16 final size:16
Alignment explanation
Indices: 8203178--8203208 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
8203168 TTGCTATTAC
8203178 ACCTCTAATCCAATAT
1 ACCTCTAATCCAATAT
8203194 ACCTCTAATCCAATA
1 ACCTCTAATCCAATA
8203209 CAGCGAACCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.32, G:0.00, T:0.29
Consensus pattern (16 bp):
ACCTCTAATCCAATAT
Found at i:8206551 original size:3 final size:3
Alignment explanation
Indices: 8206543--8206605 Score: 117
Period size: 3 Copynumber: 21.0 Consensus size: 3
8206533 CTTAATAAAT
*
8206543 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTG TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8206591 TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA
8206606 CATATCATTG
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8206725 original size:6 final size:6
Alignment explanation
Indices: 8206716--8206754 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
8206706 TATATATGTA
8206716 TATATG TATATG TATATG TATATG TATATG TATATG TAT
1 TATATG TATATG TATATG TATATG TATATG TATATG TAT
8206755 TCTTTTTCTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.51
Consensus pattern (6 bp):
TATATG
Found at i:8206817 original size:16 final size:16
Alignment explanation
Indices: 8206796--8206831 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
8206786 ATACTTTTTT
8206796 TATATATGTATATCTA
1 TATATATGTATATCTA
*
8206812 TATATATGTATATGTA
1 TATATATGTATATCTA
8206828 TATA
1 TATA
8206832 CTTTCCATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.39, C:0.03, G:0.08, T:0.50
Consensus pattern (16 bp):
TATATATGTATATCTA
Found at i:8206978 original size:11 final size:10
Alignment explanation
Indices: 8206960--8207004 Score: 63
Period size: 11 Copynumber: 4.3 Consensus size: 10
8206950 CATGCACATT
8206960 TTTATATATA
1 TTTATATATA
8206970 TTATATATATA
1 TT-TATATATA
8206981 TTTATATAATA
1 TTTATAT-ATA
*
8206992 TTTATATGTA
1 TTTATATATA
8207002 TTT
1 TTT
8207005 GTGCATTTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
10 12 0.38
11 20 0.62
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (10 bp):
TTTATATATA
Found at i:8206984 original size:21 final size:21
Alignment explanation
Indices: 8206960--8207004 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
8206950 CATGCACATT
8206960 TTTATAT-ATATTATATATATA
1 TTTATATAATATT-TATATATA
*
8206981 TTTATATAATATTTATATGTA
1 TTTATATAATATTTATATATA
8207002 TTT
1 TTT
8207005 GTGCATTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
TTTATATAATATTTATATATA
Found at i:8214262 original size:87 final size:87
Alignment explanation
Indices: 8214092--8214262 Score: 193
Period size: 87 Copynumber: 2.0 Consensus size: 87
8214082 GGATGAGCTC
* * *
8214092 CTTACTCTTAATGAGTTCATAGCCCAGAGTTTGCGTGGTCCTAGTAAGATGAACTTGATGAATTC
1 CTTACTCTTAATGAATTCATAGCCAAGAGTTTGCGTGGTCCTAGTAAGACGAACTTGATGAATTC
* * *
8214157 ACCAACGTGTGAAGTTGAGTTT
66 ACCAACGTATAAAATTGAGTTT
* * * * * *
8214179 CTTACTCTTAATGAATTCATATCCAATAGTTTGGGTGGTTCT-GTTGAGACGGACTTGATGAATT
1 CTTACTCTTAATGAATTCATAGCCAAGAGTTTGCGTGGTCCTAG-TAAGACGAACTTGATGAATT
*
8214243 CACCGAA-TTATAAAATTGAG
65 CACC-AACGTATAAAATTGAG
8214263 AGGTTAAGCT
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
86 1 0.01
87 66 0.96
88 2 0.03
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.35
Consensus pattern (87 bp):
CTTACTCTTAATGAATTCATAGCCAAGAGTTTGCGTGGTCCTAGTAAGACGAACTTGATGAATTC
ACCAACGTATAAAATTGAGTTT
Found at i:8227337 original size:3 final size:3
Alignment explanation
Indices: 8227329--8227354 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
8227319 CATGTTTTAT
8227329 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
8227355 TGGATGTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:8227476 original size:73 final size:73
Alignment explanation
Indices: 8227355--8227540 Score: 345
Period size: 73 Copynumber: 2.5 Consensus size: 73
8227345 TATTATTATT
* *
8227355 TGGATGTAATTATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
8227420 ATTTTAAG
66 ATTTTAAG
*
8227428 TTGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
8227493 ATTTTAAG
66 ATTTTAAG
8227501 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
8227541 GTCAAGTTGT
Statistics
Matches: 109, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 109 1.00
ACGTcount: A:0.28, C:0.06, G:0.24, T:0.42
Consensus pattern (73 bp):
TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
ATTTTAAG
Found at i:8231761 original size:3 final size:3
Alignment explanation
Indices: 8231753--8231808 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
8231743 GTTCTATTTT
8231753 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8231801 TTA TTA TT
1 TTA TTA TT
8231809 GTTTGGATGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8235002 original size:6 final size:6
Alignment explanation
Indices: 8234991--8235019 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
8234981 CAATAATACA
8234991 TAAACT TAAACT TAAACT TAAACT TAAAC
1 TAAACT TAAACT TAAACT TAAACT TAAAC
8235020 ATGGGCATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.17, G:0.00, T:0.31
Consensus pattern (6 bp):
TAAACT
Found at i:8245102 original size:19 final size:19
Alignment explanation
Indices: 8245079--8245132 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
8245069 AACACTTATC
8245079 AATTTTTTATATAAAAAAT
1 AATTTTTTATATAAAAAAT
* *
8245098 TATTTTTT-TCTCAATAAAAT
1 AATTTTTTATAT-AA-AAAAT
8245118 AATTTTTTA-ATAAAA
1 AATTTTTTATATAAAA
8245133 TGAAAAAGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.14
19 11 0.39
20 13 0.46
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (19 bp):
AATTTTTTATATAAAAAAT
Found at i:8246836 original size:16 final size:16
Alignment explanation
Indices: 8246791--8246838 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 16
8246781 GTTTAATTAC
8246791 TACTAATAATGTGAAA
1 TACTAATAATGTGAAA
8246807 TACTATGGTAATAATGTGAAA
1 TAC-----TAATAATGTGAAA
8246828 TACTAATAATG
1 TACTAATAATG
8246839 AGAATCAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 10
0.73 0.00 0.27
Matches are distributed among these distances:
16 11 0.41
21 16 0.59
ACGTcount: A:0.46, C:0.06, G:0.15, T:0.33
Consensus pattern (16 bp):
TACTAATAATGTGAAA
Found at i:8253565 original size:26 final size:26
Alignment explanation
Indices: 8253535--8253603 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 26
8253525 ATCCTCTCTC
8253535 AAGCCATATAACAGGAAGCTCACAAA
1 AAGCCATATAACAGGAAGCTCACAAA
*
8253561 GAGCCAT-TAATC-GAGAAGCTCACAAA
1 AAGCCATATAA-CAG-GAAGCTCACAAA
8253587 AAGCC-TAT--CAGGAAGCT
1 AAGCCATATAACAGGAAGCT
8253604 TATCCGGGCT
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
23 7 0.19
24 1 0.03
25 5 0.14
26 24 0.65
ACGTcount: A:0.43, C:0.23, G:0.19, T:0.14
Consensus pattern (26 bp):
AAGCCATATAACAGGAAGCTCACAAA
Found at i:8253669 original size:26 final size:27
Alignment explanation
Indices: 8253640--8253697 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
8253630 ATAAGAGCCA
* * *
8253640 TAATCAAG-AAGTTTACAAAGAACTTT
1 TAATCAAGAAAGATCACAAAGAACCTT
*
8253666 TAATC-AGAAAGATCACAAAGAGCCTT
1 TAATCAAGAAAGATCACAAAGAACCTT
8253692 TAATCA
1 TAATCA
8253698 GGTTCTCTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.47, C:0.16, G:0.12, T:0.26
Consensus pattern (27 bp):
TAATCAAGAAAGATCACAAAGAACCTT
Found at i:8254944 original size:101 final size:101
Alignment explanation
Indices: 8254827--8255112 Score: 457
Period size: 101 Copynumber: 2.8 Consensus size: 101
8254817 AAAGTGATGG
*
8254827 TCACATGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTAC
8254892 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
66 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
* * *
8254928 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTATACCAGAATGATAGGTCGTATTTGTAGTAC
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTAC
8254993 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
66 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
* * * * *
8255029 TCACGTGTGTAGTACTATATGCAGGCTACTACGTGTATCGGATAGTGAT-GGTCACATGTGTAGT
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGA-A-TGATAGGTCGCATGTGTAGT
*
8255093 ACTATGTGCATGCTACTATG
64 ACTATGTGCAGGCTACTATG
8255113 TGAATCCGTA
Statistics
Matches: 170, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
101 134 0.79
102 32 0.19
103 4 0.02
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTAC
TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
Found at i:8254947 original size:51 final size:50
Alignment explanation
Indices: 8254827--8255112 Score: 242
Period size: 51 Copynumber: 5.7 Consensus size: 50
8254817 AAAGTGATGG
* * * * * * * *
8254827 TCACATGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGA-ATGATAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATA-GTTCGA
* *
8254877 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAG-TTCGA
* * ** *
8254928 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTATACCAGAATGATAGGTCG-
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACC-G---GATAGTTCGA
*
8254981 T-A--TTTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAG-TTCGA
* * * * *
8255029 TCACGTGTGTAGTACTATATGCAGGCTACTACGTGTATCGGATAGTGAT-GG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGT--TCGA
* *
8255080 TCACATGTGTAGTACTATGTGCATGCTACTATG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATG
8255113 TGAATCCGTA
Statistics
Matches: 192, Mismatches: 31, Indels: 25
0.77 0.12 0.10
Matches are distributed among these distances:
46 5 0.03
47 3 0.02
48 1 0.01
49 2 0.01
50 68 0.35
51 101 0.53
52 3 0.02
53 1 0.01
54 3 0.02
55 5 0.03
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.31
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTTCGA
Found at i:8255114 original size:26 final size:26
Alignment explanation
Indices: 8255034--8255114 Score: 62
Period size: 26 Copynumber: 3.2 Consensus size: 26
8255024 TTCGATCACG
* *
8255034 TGTGTAGTACTATATGCAGGCTACTA
1 TGTGTAGTACTATGTGCATGCTACTA
* * *
8255060 CGTGTA-T-CGGATAGTG-ATGGTCAC-A
1 TGTGTAGTAC-TAT-GTGCATGCT-ACTA
8255085 TGTGTAGTACTATGTGCATGCTACTA
1 TGTGTAGTACTATGTGCATGCTACTA
8255111 TGTG
1 TGTG
8255115 AATCCGTATC
Statistics
Matches: 40, Mismatches: 8, Indels: 14
0.65 0.13 0.23
Matches are distributed among these distances:
24 1 0.03
25 17 0.43
26 21 0.52
27 1 0.03
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCATGCTACTA
Found at i:8255201 original size:43 final size:42
Alignment explanation
Indices: 8255138--8255246 Score: 143
Period size: 41 Copynumber: 2.6 Consensus size: 42
8255128 GAATATAAAT
*
8255138 GTGGTTGCTAAGTGTTGATTCCACCATATCCTTGACTGTGA-AAG
1 GTGGTTGCTAAGTGCTGATTCCACCATATCCTTGA-T-T-ATAAG
* *
8255182 G-GGTTGCTATGTGCTGATTCC-CCGTATCCTTGATTATAAG
1 GTGGTTGCTAAGTGCTGATTCCACCATATCCTTGATTATAAG
8255222 GTGGTTGCTAAGTGCTGATTCCACC
1 GTGGTTGCTAAGTGCTGATTCCACC
8255247 GTGTGACGGT
Statistics
Matches: 58, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
39 1 0.02
40 5 0.09
41 20 0.34
42 13 0.22
43 18 0.31
44 1 0.02
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (42 bp):
GTGGTTGCTAAGTGCTGATTCCACCATATCCTTGATTATAAG
Found at i:8255237 original size:41 final size:42
Alignment explanation
Indices: 8255118--8255248 Score: 151
Period size: 43 Copynumber: 3.1 Consensus size: 42
8255108 CTATGTGAAT
* * * *
8255118 CCGTATCATTGAATATAAATGTGGTTGCTAAGTGTTGATTCCA
1 CCGTATCCTTGATTAT-AAGGTGGTTGCTAAGTGCTGATTCCA
* *
8255161 CCATATCCTTGACTGTGA-AAGG-GGTTGCTATGTGCTGATTCC-
1 CCGTATCCTTGA-T-T-ATAAGGTGGTTGCTAAGTGCTGATTCCA
8255203 CCGTATCCTTGATTATAAGGTGGTTGCTAAGTGCTGATTCCA
1 CCGTATCCTTGATTATAAGGTGGTTGCTAAGTGCTGATTCCA
8255245 CCGT
1 CCGT
8255249 GTGACGGTTA
Statistics
Matches: 74, Mismatches: 8, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
39 1 0.01
40 5 0.07
41 20 0.27
42 15 0.20
43 28 0.38
44 3 0.04
45 1 0.01
46 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (42 bp):
CCGTATCCTTGATTATAAGGTGGTTGCTAAGTGCTGATTCCA
Found at i:8259971 original size:8 final size:7
Alignment explanation
Indices: 8259954--8259991 Score: 51
Period size: 8 Copynumber: 5.3 Consensus size: 7
8259944 GCAAGGCAAT
8259954 AATAATA
1 AATAATA
8259961 AATAGATA
1 AATA-ATA
8259969 AATAAATA
1 AAT-AATA
8259977 AATAATA
1 AATAATA
8259984 AA-AATA
1 AATAATA
8259990 AA
1 AA
8259992 AAAATCCAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
6 6 0.21
7 10 0.34
8 12 0.41
9 1 0.03
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (7 bp):
AATAATA
Found at i:8264365 original size:3 final size:3
Alignment explanation
Indices: 8264349--8264383 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
8264339 TAATGAGACA
8264349 TCC TCC T-C TGCC TCC TCC TCC TCC TCC TCC TCC TC
1 TCC TCC TCC T-CC TCC TCC TCC TCC TCC TCC TCC TC
8264384 ATCATCATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 26 0.87
4 2 0.07
ACGTcount: A:0.00, C:0.63, G:0.03, T:0.34
Consensus pattern (3 bp):
TCC
Done.