Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62769430
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1067035 characters in sequence are not A, C, G, or T
File 31 of 206
Found at i:9151292 original size:34 final size:35
Alignment explanation
Indices: 9151235--9151301 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
9151225 CAAACACCAG
*
9151235 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
9151270 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
9151302 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:9151640 original size:14 final size:15
Alignment explanation
Indices: 9151615--9151643 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
9151605 ATTAATTTTG
9151615 ATCAAGTCAAATTAA
1 ATCAAGTCAAATTAA
9151630 ATCAA-TCAAATTAA
1 ATCAAGTCAAATTAA
9151644 TTAAAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.55, C:0.14, G:0.03, T:0.28
Consensus pattern (15 bp):
ATCAAGTCAAATTAA
Found at i:9156663 original size:23 final size:23
Alignment explanation
Indices: 9156637--9156711 Score: 132
Period size: 23 Copynumber: 3.3 Consensus size: 23
9156627 ATAAGTGCAA
*
9156637 CACTGATATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
9156660 CACTGAAATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
*
9156683 CACTGAAACGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
9156706 CACTGA
1 CACTGA
9156712 TCAATAACAC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 50 1.00
ACGTcount: A:0.33, C:0.28, G:0.21, T:0.17
Consensus pattern (23 bp):
CACTGAAATGTAGCCGAAGCTAC
Found at i:9162701 original size:18 final size:18
Alignment explanation
Indices: 9162675--9162709 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
9162665 GCGGAGTAAA
*
9162675 AAATACAAATTTAAATCC
1 AAATACAAATTCAAATCC
*
9162693 AAATTCAAATTCAAATC
1 AAATACAAATTCAAATC
9162710 TGAATGGTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.17, G:0.00, T:0.29
Consensus pattern (18 bp):
AAATACAAATTCAAATCC
Found at i:9166866 original size:3 final size:3
Alignment explanation
Indices: 9166858--9166922 Score: 103
Period size: 3 Copynumber: 21.7 Consensus size: 3
9166848 TAATAGTATC
* * *
9166858 AAT AAT AAT ACT AAG GAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
9166906 AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AA
9166923 CACTAAAATA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:9166867 original size:15 final size:13
Alignment explanation
Indices: 9166847--9166922 Score: 72
Period size: 12 Copynumber: 5.8 Consensus size: 13
9166837 AATGATAGTC
9166847 ATAATAGTATCAATA
1 ATAATA-TAT-AATA
9166862 ATAATACTA-AGGATA
1 ATAATA-TATA--ATA
9166877 ATAATA-ATAATA
1 ATAATATATAATA
9166889 ATAATA-ATAATA
1 ATAATATATAATA
9166901 ATAATA-ATAATA
1 ATAATATATAATA
9166913 ATAATA-ATAA
1 ATAATATATAA
9166923 CACTAAAATA
Statistics
Matches: 57, Mismatches: 1, Indels: 9
0.85 0.01 0.13
Matches are distributed among these distances:
12 37 0.65
13 2 0.04
14 1 0.02
15 17 0.30
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.32
Consensus pattern (13 bp):
ATAATATATAATA
Found at i:9168123 original size:22 final size:23
Alignment explanation
Indices: 9168070--9168125 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
9168060 CCCGTTTTTA
* * *
9168070 ATTAAAATTAAAATTATTTTTTT
1 ATTAAAATTAAAACTATATTGTT
*
9168093 AATAAAATTAAAACTA-ATTGTT
1 ATTAAAATTAAAACTATATTGTT
9168115 ATTAAAATTAA
1 ATTAAAATTAA
9168126 TTGTTAATAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 14 0.50
23 14 0.50
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
ATTAAAATTAAAACTATATTGTT
Found at i:9168138 original size:16 final size:16
Alignment explanation
Indices: 9168101--9168140 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
9168091 TTAATAAAAT
* *
9168101 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAA
9168117 TAAAATTAATTGTTAA
1 TAAAATTAATTGTTAA
9168133 TAAAATTA
1 TAAAATTA
9168141 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAA
Found at i:9168245 original size:68 final size:68
Alignment explanation
Indices: 9168133--9168338 Score: 371
Period size: 68 Copynumber: 3.1 Consensus size: 68
9168123 TAATTGTTAA
*
9168133 TAAAATTATCAAATTATTAATTG--TTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGAT
1 TAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGAT
9168196 TAG
66 TAG
9168199 TAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGAT
1 TAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGAT
9168264 TAG
66 TAG
* *
9168267 TAAATTTATGAAATTATTAATTGTATTAATTGTATTAATTGTTGTAACAAAATCTAACATTTGAT
1 TAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGAT
9168332 TAG
66 TAG
9168335 TAAA
1 TAAA
9168339 ACAAACTTGA
Statistics
Matches: 135, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
66 22 0.16
68 113 0.84
ACGTcount: A:0.41, C:0.04, G:0.09, T:0.46
Consensus pattern (68 bp):
TAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGAT
TAG
Found at i:9168246 original size:9 final size:9
Alignment explanation
Indices: 9168213--9168240 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
9168203 TTTATCAAAT
9168213 TATTAATTG
1 TATTAATTG
9168222 TATTAATTG
1 TATTAATTG
9168231 TATTAATTG
1 TATTAATTG
9168240 T
1 T
9168241 TGTAATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:9168293 original size:9 final size:9
Alignment explanation
Indices: 9168281--9168308 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
9168271 TTTATGAAAT
9168281 TATTAATTG
1 TATTAATTG
9168290 TATTAATTG
1 TATTAATTG
9168299 TATTAATTG
1 TATTAATTG
9168308 T
1 T
9168309 TGTAACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:9168445 original size:22 final size:24
Alignment explanation
Indices: 9168405--9168448 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
9168395 AAATAAACTT
9168405 AAAATAAAAAACTATTATATTTTA
1 AAAATAAAAAACTATTATATTTTA
9168429 AAAATAAAAAA-TA-TATATTT
1 AAAATAAAAAACTATTATATTT
9168449 AATATTTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.35
23 2 0.10
24 11 0.55
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (24 bp):
AAAATAAAAAACTATTATATTTTA
Found at i:9185430 original size:6 final size:6
Alignment explanation
Indices: 9185419--9185444 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
9185409 TCTAAATTCA
9185419 CATTGC CATTGC CATTGC CATTGC CA
1 CATTGC CATTGC CATTGC CATTGC CA
9185445 AATACATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.35, G:0.15, T:0.31
Consensus pattern (6 bp):
CATTGC
Found at i:9190771 original size:25 final size:24
Alignment explanation
Indices: 9190729--9190790 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 24
9190719 AAAAATAAAG
*
9190729 AAAGAAAAGTAAAGTTAAAAGAACATA
1 AAAGAAAA--AAAATTAAAAG-ACATA
* *
9190756 AAAGAAAAAAAATTAAATGACTTA
1 AAAGAAAAAAAATTAAAAGACATA
9190780 AAACGAAAAAA
1 AAA-GAAAAAA
9190791 TATGGTACAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
24 7 0.23
25 16 0.52
27 8 0.26
ACGTcount: A:0.69, C:0.05, G:0.11, T:0.15
Consensus pattern (24 bp):
AAAGAAAAAAAATTAAAAGACATA
Found at i:9193296 original size:18 final size:17
Alignment explanation
Indices: 9193263--9193301 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
9193253 TTTTATAAAT
9193263 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
9193281 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
9193298 TGTG
1 TGTG
9193302 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:9193554 original size:23 final size:23
Alignment explanation
Indices: 9193528--9193625 Score: 178
Period size: 23 Copynumber: 4.3 Consensus size: 23
9193518 GTGTTATTGA
*
9193528 TCAGTGGTAGCTTCGGCTACGTT
1 TCAGTGGTAGCTTCGGCTACATT
9193551 TCAGTGGTAGCTTCGGCTACATT
1 TCAGTGGTAGCTTCGGCTACATT
9193574 TCAGTGGTAGCTTCGGCTACATT
1 TCAGTGGTAGCTTCGGCTACATT
*
9193597 TCAGTGGTAGCTTCGGCTACATA
1 TCAGTGGTAGCTTCGGCTACATT
9193620 TCAGTG
1 TCAGTG
9193626 TTGCACTTAT
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 73 1.00
ACGTcount: A:0.17, C:0.21, G:0.28, T:0.34
Consensus pattern (23 bp):
TCAGTGGTAGCTTCGGCTACATT
Found at i:9195046 original size:21 final size:21
Alignment explanation
Indices: 9195020--9195060 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
9195010 GTTAATTTTG
9195020 TTATTATTTTAAAGACATTTA
1 TTATTATTTTAAAGACATTTA
* *
9195041 TTATTATTTTAGAGGCATTT
1 TTATTATTTTAAAGACATTT
9195061 GCTTGTTAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.05, G:0.10, T:0.54
Consensus pattern (21 bp):
TTATTATTTTAAAGACATTTA
Found at i:9202682 original size:4 final size:4
Alignment explanation
Indices: 9202673--9202701 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
9202663 TGTGGGGAGC
9202673 CAAT CAAT CAAT CAAT CAAT CAAT CAAT C
1 CAAT CAAT CAAT CAAT CAAT CAAT CAAT C
9202702 CCCACACATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (4 bp):
CAAT
Found at i:9203633 original size:8 final size:8
Alignment explanation
Indices: 9203620--9203653 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
9203610 AAATAATTTT
9203620 TTATAAAA
1 TTATAAAA
9203628 TTATAAAA
1 TTATAAAA
* *
9203636 ATATATAA
1 TTATAAAA
9203644 TTATAAAA
1 TTATAAAA
9203652 TT
1 TT
9203654 CTACAAAGGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (8 bp):
TTATAAAA
Found at i:9207366 original size:44 final size:46
Alignment explanation
Indices: 9207333--9207560 Score: 112
Period size: 44 Copynumber: 5.2 Consensus size: 46
9207323 CTGTATCTTC
*
9207333 AGGGAGATAAGA-CTTGT-ATCTTCGATCTACTCCAC--TACTGCCT
1 AGGGAGATAAGATC-TGTAATCTTCAATCTACTCCACTGTACTGCCT
* *
9207376 AGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGT--TGCCC
1 AGGGAGATAAGATCTGTAATCTTCAATCTACTCCACTGTACTGCCT
* * * * *
9207420 ATGGAGAT-AGA-AT-TATTGGCTTCAATGTACTCCACTGTA--ACCT
1 AGGGAGATAAGATCTGTAAT--CTTCAATCTACTCCACTGTACTGCCT
* * * ** * * *
9207463 CAGGGAGGTAAAATCCGCCATCCTT-GATCTGCTCCAC--TACTGCTT
1 -AGGGAGATAAGATCTGTAAT-CTTCAATCTACTCCACTGTACTGCCT
**
9207508 AGGGAGATAAGATCTGTAATCTTTGATCTA-TCCCACTG--CTGCCT
1 AGGGAGATAAGATCTGTAATCTTCAATCTACT-CCACTGTACTGCCT
*
9207552 AGGGGGATA
1 AGGGAGATA
9207561 GACCAGATAT
Statistics
Matches: 136, Mismatches: 32, Indels: 33
0.68 0.16 0.16
Matches are distributed among these distances:
41 3 0.02
42 1 0.01
43 43 0.32
44 71 0.52
45 13 0.10
46 4 0.03
47 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (46 bp):
AGGGAGATAAGATCTGTAATCTTCAATCTACTCCACTGTACTGCCT
Found at i:9207779 original size:44 final size:43
Alignment explanation
Indices: 9207637--9208282 Score: 398
Period size: 44 Copynumber: 14.7 Consensus size: 43
9207627 GCCAATACAT
* * *
9207637 GAAGACAAGGTCTGTTCTTTTCGATCTACTCCACCACCAGTATGG
1 GAAGACAAGATCTGTT-TTTT-GATCTACTTCGCCACCAGTATGG
*
9207682 GGAGACAAGATCTGTTGTCTTTGATCTA-TTACATGCCA--A--AT--
1 GAAGACAAGATCTGTT-T-TTTGATCTACTT-C--GCCACCAGTATGG
**
9207723 GAAGACAAGATCTGTTTTTTCGATCTGTTTCGCCACCAGTATGG
1 GAAGACAAGATCTGTTTTTT-GATCTACTTCGCCACCAGTATGG
* * ***
9207767 GAAGACAAGATCTTTTATCTTTGATCTAC-TC-CACGCCAGTACAC
1 GAAGACAAGATCTGTT-T-TTTGATCTACTTCGC-CACCAGTATGG
* *
9207811 GAAGACAAGATCTGCTTTTTTG-----CTTCACCACCAGTATGA
1 GAAGACAAGATCTG-TTTTTTGATCTACTTCGCCACCAGTATGG
* * * ***
9207850 GAAGGCAAGATCTGTTATCTTTGATCTACTTC-ACGCCAGTACAT
1 GAAGACAAGATCTGTT-T-TTTGATCTACTTCGCCACCAGTATGG
9207894 GAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGG
1 GAAGACAAGATCTGTTTT-TT-GATCTACTTCGCCACCAGTATGG
* * * ***
9207939 GAAGACAAGATATGGTATCTTTGATCTACTTCACGCA--AGTACAT
1 GAAGACAAGATCT-GT-TTTTTGATCTACTTCGC-CACCAGTATGG
* * * *
9207983 GAAGATAAGATCTATTTTCTTCGATCTGCTTCACCACCAGTATGG
1 GAAGACAAGATCTGTTTT-TT-GATCTACTTCGCCACCAGTATGG
* * * * ***
9208028 GAAGGCAAAATCTATTATCTTTGATCTACTTC-ACACCAGTACAT
1 GAAGACAAGATCTGTT-T-TTTGATCTACTTCGCCACCAGTATGG
*
9208072 GAAGAAAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGG
1 GAAGACAAGATCTGTTTT-TT-GATCTACTTCGCCACCAGTATGG
* * ***
9208117 GAAGACAAGATCTGTTATCTTTGATCTACTTC-ACGCCAGTACAT
1 GAAGACAAGATCTGTT-T-TTTGATCTACTTCGCCACCAGTATGG
*
9208161 GAAG-CAAAGATCTGTTTTCTTCAATCTACTTCGCCACCAGTATGG
1 GAAGAC-AAGATCTGTTTT-TT-GATCTACTTCGCCACCAGTATGG
* * ***
9208206 GAAGACAAGATCTGTTATCTTTGATCTACTTCACGA-CAGTACAT
1 GAAGACAAGATCTGTT-T-TTTGATCTACTTCGCCACCAGTATGG
*
9208250 GAAGACAAGATCTACTTTTTTCGATCTACTTCG
1 GAAGACAAGATCT-GTTTTTT-GATCTACTTCG
9208283 TTGCCAATAG
Statistics
Matches: 469, Mismatches: 81, Indels: 103
0.72 0.12 0.16
Matches are distributed among these distances:
38 7 0.01
39 26 0.06
40 13 0.03
41 17 0.04
42 7 0.01
43 25 0.05
44 186 0.40
45 158 0.34
46 22 0.05
47 8 0.02
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (43 bp):
GAAGACAAGATCTGTTTTTTGATCTACTTCGCCACCAGTATGG
Found at i:9208308 original size:89 final size:89
Alignment explanation
Indices: 9207613--9208282 Score: 920
Period size: 89 Copynumber: 7.6 Consensus size: 89
9207603 TCTGCTGTGC
* * * *
9207613 TTGATCTACTTCACGCCAATACATGAAGACAAGGTCTGTTCTT-TTCGATCTACTCCACCACCAG
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTT-TTCTTCGATCTACTTCGCCACCAG
* *
9207677 TATGGGGAGACAAGATCTGTTGTCT
65 TATGGGAAGACAAGATCTGTTATCT
* **
9207702 TTGATCTA-TTACATGCCA--A-ATGAAGACAAGATCTGTTTT-TTCGATCTGTTTCGCCACCAG
1 TTGATCTACTT-CACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAG
*
9207762 TATGGGAAGACAAGATCTTTTATCT
65 TATGGGAAGACAAGATCTGTTATCT
* * *
9207787 TTGATCTACTCCACGCCAGTACACGAAGACAAGATCTGCTTTT-TT-G-----CTTCACCACCAG
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTG-TTTTCTTCGATCTACTTCGCCACCAG
* *
9207845 TATGAGAAGGCAAGATCTGTTATCT
65 TATGGGAAGACAAGATCTGTTATCT
9207870 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGT
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGT
* *
9207935 ATGGGAAGACAAGATATGGTATCT
66 ATGGGAAGACAAGATCTGTTATCT
* * * * *
9207959 TTGATCTACTTCACGCAAGTACATGAAGATAAGATCTATTTTCTTCGATCTGCTTCACCACCAGT
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGT
* * *
9208024 ATGGGAAGGCAAAATCTATTATCT
66 ATGGGAAGACAAGATCTGTTATCT
* *
9208048 TTGATCTACTTCACACCAGTACATGAAGAAAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGT
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGT
9208113 ATGGGAAGACAAGATCTGTTATCT
66 ATGGGAAGACAAGATCTGTTATCT
*
9208137 TTGATCTACTTCACGCCAGTACATGAAG-CAAAGATCTGTTTTCTTCAATCTACTTCGCCACCAG
1 TTGATCTACTTCACGCCAGTACATGAAGAC-AAGATCTGTTTTCTTCGATCTACTTCGCCACCAG
9208201 TATGGGAAGACAAGATCTGTTATCT
65 TATGGGAAGACAAGATCTGTTATCT
* *
9208226 TTGATCTACTTCACGACAGTACATGAAGACAAGATCTACTTTT-TTCGATCTACTTCG
1 TTGATCTACTTCACGCCAGTACATGAAGACAAGATCT-GTTTTCTTCGATCTACTTCG
9208283 TTGCCAATAG
Statistics
Matches: 516, Mismatches: 49, Indels: 32
0.86 0.08 0.05
Matches are distributed among these distances:
82 4 0.01
83 70 0.14
84 1 0.00
85 55 0.11
86 18 0.03
87 2 0.00
88 18 0.03
89 343 0.66
90 5 0.01
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (89 bp):
TTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGT
ATGGGAAGACAAGATCTGTTATCT
Found at i:9209610 original size:7 final size:7
Alignment explanation
Indices: 9209600--9209638 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
9209590 CCGGTTTTAC
9209600 TTTTTCA
1 TTTTTCA
9209607 TTTTTCA
1 TTTTTCA
9209614 TTTTTCA
1 TTTTTCA
9209621 -TTTTCA
1 TTTTTCA
*
9209627 TCTCTTCA
1 T-TTTTCA
9209635 TTTT
1 TTTT
9209639 CCACATCACT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 6 0.21
7 16 0.57
8 6 0.21
ACGTcount: A:0.13, C:0.18, G:0.00, T:0.69
Consensus pattern (7 bp):
TTTTTCA
Found at i:9210604 original size:20 final size:20
Alignment explanation
Indices: 9210579--9210619 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
9210569 AATTTGGCAG
9210579 AAAAAATC-TGAAAGAATGAA
1 AAAAAATCGT-AAAGAATGAA
9210599 AAAAAATCGTAAAGAATGAA
1 AAAAAATCGTAAAGAATGAA
9210619 A
1 A
9210620 GAACATTTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 19 0.95
21 1 0.05
ACGTcount: A:0.66, C:0.05, G:0.15, T:0.15
Consensus pattern (20 bp):
AAAAAATCGTAAAGAATGAA
Found at i:9214598 original size:122 final size:122
Alignment explanation
Indices: 9214379--9214623 Score: 436
Period size: 122 Copynumber: 2.0 Consensus size: 122
9214369 TTTGAAAATT
* *
9214379 GTAGATAAAGAAAATGAGTACTGGTAGTTCTTGTGGATGTGGTATCCATGGGCATGGTGGTCGCC
1 GTAGATAAAGAAAATGAGTACTAGTAGTTCTTGTGGATGTGGTATCCATGGGCATGGTGGTCACC
* *
9214444 ATTGGGGGGCTCAAGCTGAGCCTTATTTGATGGGCAGCATACCCCAATTAGATACAA
66 ATTAGGGGGCTCAAGCTGAGCCTTATTCGATGGGCAGCATACCCCAATTAGATACAA
* *
9214501 GTAGATAAAGAAAATGAGTACTAGTAGTTCTTGTGGATGTGGTATCCGTGGGCGTGGTGGTCACC
1 GTAGATAAAGAAAATGAGTACTAGTAGTTCTTGTGGATGTGGTATCCATGGGCATGGTGGTCACC
9214566 ATTAGGGGGCTCAAGCTGAGCCTTATTCGATGGGCAGCATACCCCAATTAGATACAA
66 ATTAGGGGGCTCAAGCTGAGCCTTATTCGATGGGCAGCATACCCCAATTAGATACAA
9214623 G
1 G
9214624 CGAGACTGTC
Statistics
Matches: 117, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
122 117 1.00
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (122 bp):
GTAGATAAAGAAAATGAGTACTAGTAGTTCTTGTGGATGTGGTATCCATGGGCATGGTGGTCACC
ATTAGGGGGCTCAAGCTGAGCCTTATTCGATGGGCAGCATACCCCAATTAGATACAA
Found at i:9216911 original size:38 final size:37
Alignment explanation
Indices: 9216823--9216912 Score: 110
Period size: 37 Copynumber: 2.4 Consensus size: 37
9216813 CCCATTACCG
*
9216823 TGGTGTGTAGGGTGGACGAGCCTATAATAGCCCTTTA
1 TGGTGTGTAGGGTGGACGAGCCTACAATAGCCCTTTA
* * *
9216860 TGGTGTGTAGGGTGGATGGGCCTACCATAGCCCAATTT-
1 TGGTGTGTAGGGTGGACGAGCCTACAATAGCCC--TTTA
*
9216898 TGGTGTGAAGGGTGG
1 TGGTGTGTAGGGTGG
9216913 TCGGAATGGT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
37 29 0.63
38 14 0.30
39 3 0.07
ACGTcount: A:0.19, C:0.14, G:0.38, T:0.29
Consensus pattern (37 bp):
TGGTGTGTAGGGTGGACGAGCCTACAATAGCCCTTTA
Found at i:9218672 original size:18 final size:17
Alignment explanation
Indices: 9218651--9218684 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
9218641 AAAATATTAT
9218651 ATTAATAAGATTAAAATA
1 ATTAATAA-ATTAAAATA
*
9218669 ATTAATTAATTAAAAT
1 ATTAATAAATTAAAAT
9218685 TTAAAAAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
ATTAATAAATTAAAATA
Found at i:9224320 original size:7 final size:7
Alignment explanation
Indices: 9224308--9224332 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
9224298 TTTTATTTTA
9224308 AAAAAAT
1 AAAAAAT
9224315 AAAAAAT
1 AAAAAAT
9224322 AAAAAAT
1 AAAAAAT
9224329 AAAA
1 AAAA
9224333 TAAAAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:9226420 original size:28 final size:27
Alignment explanation
Indices: 9226384--9226466 Score: 71
Period size: 28 Copynumber: 3.0 Consensus size: 27
9226374 GCTTGCATAC
*
9226384 ATGGGTCGCACCTATGTGTTTCGCACAT
1 ATGGTTCGCACCTATG-GTTTCGCACAT
* * * *
9226412 ATGGTTCGCACTTA-GGGTTCACATAT
1 ATGGTTCGCACCTATGGTTTCGCACAT
*
9226438 ATGGGTTCACACCTATGGGTTT-GCACAT
1 AT-GGTTCGCACCTAT-GGTTTCGCACAT
9226466 A
1 A
9226467 CAAGGGGGCT
Statistics
Matches: 42, Mismatches: 10, Indels: 6
0.72 0.17 0.10
Matches are distributed among these distances:
26 10 0.24
27 11 0.26
28 17 0.40
29 4 0.10
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.33
Consensus pattern (27 bp):
ATGGTTCGCACCTATGGTTTCGCACAT
Found at i:9226445 original size:14 final size:14
Alignment explanation
Indices: 9226407--9226458 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 14
9226397 ATGTGTTTCG
*
9226407 CACATAT-GGTTCG
1 CACATATGGGTTCA
*
9226420 CACTTA-GGGTTCA
1 CACATATGGGTTCA
*
9226433 CATATATGGGTTCA
1 CACATATGGGTTCA
*
9226447 CACCTATGGGTT
1 CACATATGGGTT
9226459 TGCACATACA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
13 14 0.45
14 17 0.55
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.33
Consensus pattern (14 bp):
CACATATGGGTTCA
Found at i:9226503 original size:23 final size:23
Alignment explanation
Indices: 9226476--9226581 Score: 61
Period size: 23 Copynumber: 4.5 Consensus size: 23
9226466 ACAAGGGGGC
9226476 TCGCATAAATACATATACAGGGT
1 TCGCATAAATACATATACAGGGT
* * * * *
9226499 TCGCATAGTACACATAAATAGGTT
1 TCGCATA-AATACATATACAGGGT
* * * *
9226523 TCACGT-AATAACATGTACAAGGT
1 TCGCATAAAT-ACATATACAGGGT
* * *
9226546 TCGCATATACACAAATATATAGGGT
1 TCGCATA-A-ATACATATACAGGGT
9226571 TCGCATAAATA
1 TCGCATAAATA
9226582 GTCATGTAGG
Statistics
Matches: 56, Mismatches: 22, Indels: 10
0.64 0.25 0.11
Matches are distributed among these distances:
22 1 0.02
23 21 0.38
24 16 0.29
25 17 0.30
26 1 0.02
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (23 bp):
TCGCATAAATACATATACAGGGT
Found at i:9226615 original size:45 final size:45
Alignment explanation
Indices: 9226564--9226688 Score: 123
Period size: 45 Copynumber: 2.8 Consensus size: 45
9226554 ACACAAATAT
9226564 ATAGGGTTCGCATAAATAGTCATGTAGGGTTTGCATGAAT-AACAC
1 ATAGGGTTCGCATAAATA-TCATGTAGGGTTTGCATGAATAAACAC
* * * *
9226609 ATAGGGTTTGCGTAGCAATA-CATTTAGGG-TTGACATGTATAAACAC
1 ATAGGGTTCGCATA--AATATCATGTAGGGTTTG-CATGAATAAACAC
* *
9226655 ATAGAGTTCGCAT-GATATTCATGTAGGGTTTGCA
1 ATAGGGTTCGCATAAATA-TCATGTAGGGTTTGCA
9226689 AAGATATACT
Statistics
Matches: 64, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
43 3 0.05
44 3 0.05
45 36 0.56
46 18 0.28
47 4 0.06
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (45 bp):
ATAGGGTTCGCATAAATATCATGTAGGGTTTGCATGAATAAACAC
Found at i:9226798 original size:29 final size:28
Alignment explanation
Indices: 9226728--9226798 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 28
9226718 CCTATATGAT
*
9226728 TTTGCATAT-GGGTTCGCATACAAAAGG
1 TTTGCATATAGGGTTCGCACACAAAAGG
* * *
9226755 TTTGCCTATACGGTTCGCACACAAAGGGG
1 TTTGCATATAGGGTTCGCACACAAA-AGG
*
9226784 TTTGCATTTAGGGTT
1 TTTGCATATAGGGTT
9226799 TTCTTATAGG
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
27 8 0.23
28 13 0.37
29 14 0.40
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (28 bp):
TTTGCATATAGGGTTCGCACACAAAAGG
Found at i:9228277 original size:25 final size:27
Alignment explanation
Indices: 9228243--9228304 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
9228233 AATAAAAATA
*
9228243 ACCAAAATATTAT-TA-CTTTTTATTT
1 ACCAAAATATTATAAATCTTTTTATTT
*
9228268 ACCAAAATATTATAAATTTTTTTATTT
1 ACCAAAATATTATAAATCTTTTTATTT
*
9228295 ATCAAAATAT
1 ACCAAAATAT
9228305 ACAAAAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
25 13 0.41
26 1 0.03
27 18 0.56
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.48
Consensus pattern (27 bp):
ACCAAAATATTATAAATCTTTTTATTT
Found at i:9228394 original size:27 final size:27
Alignment explanation
Indices: 9228355--9228415 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
9228345 GCCTGATCAG
*
9228355 GCCAATGACATTGGCGGCACCAAAGGT
1 GCCAAAGACATTGGCGGCACCAAAGGT
* *
9228382 GCCAAAGAGATTGGCGGCACCAATGGT
1 GCCAAAGACATTGGCGGCACCAAAGGT
9228409 GCCAAAG
1 GCCAAAG
9228416 GACTAAAATG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.31, C:0.25, G:0.31, T:0.13
Consensus pattern (27 bp):
GCCAAAGACATTGGCGGCACCAAAGGT
Found at i:9229321 original size:27 final size:27
Alignment explanation
Indices: 9229279--9229331 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
9229269 TACATTTTAG
9229279 TCTTTGGCACTATTGGTGCCGCCAATC
1 TCTTTGGCACTATTGGTGCCGCCAATC
9229306 TCTTTGGCACCT-TTGGTGCCGCCAAT
1 TCTTTGGCA-CTATTGGTGCCGCCAAT
9229332 GTGATTGGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 23 0.92
28 2 0.08
ACGTcount: A:0.13, C:0.30, G:0.23, T:0.34
Consensus pattern (27 bp):
TCTTTGGCACTATTGGTGCCGCCAATC
Found at i:9229339 original size:27 final size:27
Alignment explanation
Indices: 9229282--9229340 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
9229272 ATTTTAGTCT
*
9229282 TTGGCACTATTGGTGCCGCCAATCTCT
1 TTGGCACTATTGGTGCCGCCAATCTCA
* *
9229309 TTGGCACCT-TTGGTGCCGCCAATGTGA
1 TTGGCA-CTATTGGTGCCGCCAATCTCA
9229336 TTGGC
1 TTGGC
9229341 CTGATCAGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 26 0.93
28 2 0.07
ACGTcount: A:0.14, C:0.27, G:0.27, T:0.32
Consensus pattern (27 bp):
TTGGCACTATTGGTGCCGCCAATCTCA
Found at i:9229420 original size:28 final size:28
Alignment explanation
Indices: 9229383--9229450 Score: 111
Period size: 28 Copynumber: 2.5 Consensus size: 28
9229373 TTTTTATTTT
*
9229383 TTTAT-ATATTTTGGTAAATAAAAAAAA
1 TTTATAATATTTTGATAAATAAAAAAAA
9229410 TTTATAATATTTTGATAAATAAAAAAAA
1 TTTATAATATTTTGATAAATAAAAAAAA
*
9229438 GTTATAATATTTT
1 TTTATAATATTTT
9229451 AATTATTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 5 0.13
28 33 0.87
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (28 bp):
TTTATAATATTTTGATAAATAAAAAAAA
Found at i:9237308 original size:16 final size:15
Alignment explanation
Indices: 9237259--9237309 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 15
9237249 CTTCGCGCGT
*
9237259 ATTGTATTATTTCAAA
1 ATTG-ATTATTTTAAA
9237275 ATTTGATTATCTTT-AA
1 A-TTGATTAT-TTTAAA
9237291 ATTGATTTATTTTAAA
1 ATTGA-TTATTTTAAA
9237307 ATT
1 ATT
9237310 CCTCTTTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
15 7 0.23
16 18 0.60
17 5 0.17
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.55
Consensus pattern (15 bp):
ATTGATTATTTTAAA
Found at i:9239035 original size:91 final size:90
Alignment explanation
Indices: 9238804--9239083 Score: 282
Period size: 91 Copynumber: 3.1 Consensus size: 90
9238794 AAACATTAAC
* *
9238804 GGTTTATCCACAAATATACTAGCAACGTTTACCTACAAA-CTCGT-TGTGTATTCACAACTACTG
1 GGTTTATCCACAAATATACTAGCAACTTTTATCTACAAACCT-GTGT-TGTATTCACAACTACTG
* *
9238867 ACAGCATATTAACCCGCAAACACTAGT
64 ACAGCATATTAACCTGCAAACACTGGT
* ** * * ** *
9238894 GGTTTATCCCCAAATATACTTCCAAATTTTTTCT-GTAACCACGTCG-TGTATTCACAACTTACT
1 GGTTTATCCACAAATATACTAGCAACTTTTATCTACAAACC-TGT-GTTGTATTCACAAC-TACT
**
9238957 GGTAGCATATTAACCTGCAAACACTGGT
63 GACAGCATATTAACCTGCAAACACTGGT
* * * *
9238985 GATTTATCCATAAATCTACTAGCACCTTTTATCTACAAACCTGTGTTGTATTCACAACTACTGAC
1 GGTTTATCCACAAATATACTAGCAACTTTTATCTACAAACCTGTGTTGTATTCACAACTACTGAC
* * *
9239050 AGCGTACTAACCTG-TAACACTGGT
66 AGCATATTAACCTGCAAACACTGGT
*
9239074 GGTTAATCCA
1 GGTTTATCCA
9239084 TAAACTGGAG
Statistics
Matches: 150, Mismatches: 33, Indels: 15
0.76 0.17 0.08
Matches are distributed among these distances:
89 19 0.13
90 60 0.40
91 67 0.45
92 4 0.03
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (90 bp):
GGTTTATCCACAAATATACTAGCAACTTTTATCTACAAACCTGTGTTGTATTCACAACTACTGAC
AGCATATTAACCTGCAAACACTGGT
Found at i:9241287 original size:2 final size:2
Alignment explanation
Indices: 9241280--9241326 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
9241270 AAACACTCGA
9241280 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9241322 AT AT A
1 AT AT A
9241327 AGTTTTTGAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:9241830 original size:41 final size:41
Alignment explanation
Indices: 9241783--9241892 Score: 132
Period size: 41 Copynumber: 2.7 Consensus size: 41
9241773 AAGTGATCGA
* *
9241783 ATATAATTCAGACTTATTGTCTAGCAGGCTTGATGCCGGTG
1 ATATAATTCAGACTTATTGTCTAGCAGGCTTAATGCCAGTG
* *
9241824 ATATAATTCAGACTCATTGCCTAGCAGGCTTAATGCCAGTG
1 ATATAATTCAGACTTATTGTCTAGCAGGCTTAATGCCAGTG
* * * *
9241865 AAATTATTCGGAC-TATAAGTCTAGCAGG
1 ATATAATTCAGACTTAT-TGTCTAGCAGG
9241893 ATAAAAGCCG
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
40 2 0.03
41 56 0.97
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (41 bp):
ATATAATTCAGACTTATTGTCTAGCAGGCTTAATGCCAGTG
Found at i:9252282 original size:2 final size:2
Alignment explanation
Indices: 9252275--9252313 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
9252265 NNTTATTTTA
9252275 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9252314 AATGTAGTTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:9254979 original size:31 final size:31
Alignment explanation
Indices: 9254944--9255005 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
9254934 GGTACTTCAA
* *
9254944 ATATGAAATCATCAACTTTCACTTACGTATC
1 ATATGAAATCATCAAATATCACTTACGTATC
* * *
9254975 ATATGAATTTATCAAATATCACTTACTTATC
1 ATATGAAATCATCAAATATCACTTACGTATC
9255006 GAGCATATCA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.37, C:0.19, G:0.05, T:0.39
Consensus pattern (31 bp):
ATATGAAATCATCAAATATCACTTACGTATC
Found at i:9255465 original size:20 final size:20
Alignment explanation
Indices: 9255442--9255485 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
9255432 CATCAGTAAT
* * *
9255442 AACAAAAATTTATCCGTATC
1 AACAAAAACTTATACATATC
*
9255462 AACAATAACTTATACATATC
1 AACAAAAACTTATACATATC
9255482 AACA
1 AACA
9255486 GTAATTCCTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.20, G:0.02, T:0.27
Consensus pattern (20 bp):
AACAAAAACTTATACATATC
Found at i:9257212 original size:2 final size:2
Alignment explanation
Indices: 9257195--9257230 Score: 54
Period size: 2 Copynumber: 17.0 Consensus size: 2
9257185 AGTTCTTCTC
9257195 TA TA CTA TA CTA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA -TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
9257231 AAAAAGTGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 28 0.88
3 4 0.12
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:9260278 original size:2 final size:2
Alignment explanation
Indices: 9260271--9260303 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
9260261 TTAAAAGTTA
9260271 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9260304 CACGACATTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9267834 original size:45 final size:45
Alignment explanation
Indices: 9267770--9267860 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
9267760 CTGCTGCAAC
9267770 AGATAATTTTTCAGTTGCAAATAAGCTCGGTGAAGGCGGTTTTGG
1 AGATAATTTTTCAGTTGCAAATAAGCTCGGTGAAGGCGGTTTTGG
9267815 AGATAATTTTTCAGTTGCAAATAAGCTCGGTGAAGGCGGTTTTGG
1 AGATAATTTTTCAGTTGCAAATAAGCTCGGTGAAGGCGGTTTTGG
9267860 A
1 A
9267861 CCTGTTTATA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.27, C:0.11, G:0.29, T:0.33
Consensus pattern (45 bp):
AGATAATTTTTCAGTTGCAAATAAGCTCGGTGAAGGCGGTTTTGG
Found at i:9274973 original size:36 final size:35
Alignment explanation
Indices: 9274933--9275194 Score: 197
Period size: 36 Copynumber: 7.2 Consensus size: 35
9274923 ACATTTTTAT
9274933 AGGGAATCTCACTGTTCATTCTTGGTTGCTTTTAGC
1 AGGGAATCTCACTGTTCATTCTTGGTTGCTTTT-GC
* * * *
9274969 AGGGAATCTTACTGTTCATTTTTGTCTGTGC-TCTGC
1 AGGGAATCTCACTGTTCATTCTTG-GT-TGCTTTTGC
* * *
9275005 AGGGAATCTCATTGTTCACTCTTGGTTGCTTTTGGT
1 AGGGAATCTCACTGTTCATTCTTGGTTGCTTTT-GC
* * ** *
9275041 AGGGAATCATTACTATTCATTTCTGTCTTTGC-TCTGC
1 AGGGAATC-TCACTGTTCA-TTCT-TGGTTGCTTTTGC
* *
9275078 AGGGAATCTCACTGTTCACTCTTGGTTACTTTTAGC
1 AGGGAATCTCACTGTTCATTCTTGGTTGCTTTT-GC
* * ** *
9275114 AGGGAATCACTCTTGTTCATTTCTGTCTTTGC-TCTGC
1 AGGGAATCTCAC-TGTTCA-TTCT-TGGTTGCTTTTGC
* * *
9275151 AGGGAATCTCACTATTCACTCTTGGTTACTTTTGTC
1 AGGGAATCTCACTGTTCATTCTTGGTTGCTTTTG-C
9275187 AGGGAATC
1 AGGGAATC
9275195 ACTCTTGTTC
Statistics
Matches: 171, Mismatches: 41, Indels: 28
0.71 0.17 0.12
Matches are distributed among these distances:
34 11 0.06
35 14 0.08
36 87 0.51
37 37 0.22
38 13 0.08
39 9 0.05
ACGTcount: A:0.17, C:0.21, G:0.21, T:0.42
Consensus pattern (35 bp):
AGGGAATCTCACTGTTCATTCTTGGTTGCTTTTGC
Found at i:9275087 original size:73 final size:73
Alignment explanation
Indices: 9274933--9275230 Score: 433
Period size: 73 Copynumber: 4.1 Consensus size: 73
9274923 ACATTTTTAT
* * * *
9274933 AGGGAATCTCACTGTTCATTCTTGGTTGCTTTTAGCAGGGAATC-TTAC-TGTTCATTTTTGTCT
1 AGGGAATCTCACTGTTCACTCTTGGTTACTTTTAGCAGGGAATCACT-CTTGTTCATTTCTGTCT
*
9274996 GTGCTCTGC
65 TTGCTCTGC
* * * * * *
9275005 AGGGAATCTCATTGTTCACTCTTGGTTGCTTTTGGTAGGGAATCATTAC-TATTCATTTCTGTCT
1 AGGGAATCTCACTGTTCACTCTTGGTTACTTTTAGCAGGGAATCACT-CTTGTTCATTTCTGTCT
9275069 TTGCTCTGC
65 TTGCTCTGC
9275078 AGGGAATCTCACTGTTCACTCTTGGTTACTTTTAGCAGGGAATCACTCTTGTTCATTTCTGTCTT
1 AGGGAATCTCACTGTTCACTCTTGGTTACTTTTAGCAGGGAATCACTCTTGTTCATTTCTGTCTT
9275143 TGCTCTGC
66 TGCTCTGC
*
9275151 AGGGAATCTCACTATTCACTCTTGGTTACTTTT-GTCAGGGAATCACTCTTGTTCATTTCTGTCT
1 AGGGAATCTCACTGTTCACTCTTGGTTACTTTTAG-CAGGGAATCACTCTTGTTCATTTCTGTCT
9275215 TTGCTCTGC
65 TTGCTCTGC
9275224 AGGGAAT
1 AGGGAAT
9275231 TTCTCATATT
Statistics
Matches: 209, Mismatches: 14, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
72 42 0.20
73 167 0.80
ACGTcount: A:0.17, C:0.21, G:0.20, T:0.42
Consensus pattern (73 bp):
AGGGAATCTCACTGTTCACTCTTGGTTACTTTTAGCAGGGAATCACTCTTGTTCATTTCTGTCTT
TGCTCTGC
Found at i:9275243 original size:37 final size:36
Alignment explanation
Indices: 9275054--9275243 Score: 104
Period size: 37 Copynumber: 5.2 Consensus size: 36
9275044 GAATCATTAC
9275054 TATTCATTTCTGTCTTTGCTCTGCAGGGAA-TCTCA
1 TATTCATTTCTGTCTTTGCTCTGCAGGGAATTCTCA
* * ** * * * *
9275089 CTGTTCA-CTCT-TGGTTACTTTTAGCAGGGAATCACTCT
1 -TATTCATTTCTGTCTTTGC-TCT-GCAGGGAAT-TCTCA
*
9275127 TGTTCATTTCTGTCTTTGCTCTGCAGGGAA-TCTCA
1 TATTCATTTCTGTCTTTGCTCTGCAGGGAATTCTCA
* ** * * * *
9275162 CTATTCA-CTCT-TGGTTACTTTTGTCAGGGAATCACTCT
1 -TATTCATTTCTGTCTTTGC-TCTG-CAGGGAAT-TCTCA
*
9275200 TGTTCATTTCTGTCTTTGCTCTGCAGGGAATTTCTCA
1 TATTCATTTCTGTCTTTGCTCTGCAGGGAA-TTCTCA
9275237 TATTCAT
1 TATTCAT
9275244 CTTTTGTTTT
Statistics
Matches: 108, Mismatches: 32, Indels: 27
0.65 0.19 0.16
Matches are distributed among these distances:
34 8 0.07
35 14 0.13
36 25 0.23
37 35 0.32
38 18 0.17
39 8 0.07
ACGTcount: A:0.17, C:0.23, G:0.17, T:0.43
Consensus pattern (36 bp):
TATTCATTTCTGTCTTTGCTCTGCAGGGAATTCTCA
Found at i:9276777 original size:22 final size:22
Alignment explanation
Indices: 9276752--9276795 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
9276742 CATTACCAGA
9276752 GATTACAAAACAGATAATAGAT
1 GATTACAAAACAGATAATAGAT
*
9276774 GATTACAGAACAGATAATAGAT
1 GATTACAAAACAGATAATAGAT
9276796 ATTTCACGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.52, C:0.09, G:0.16, T:0.23
Consensus pattern (22 bp):
GATTACAAAACAGATAATAGAT
Found at i:9278739 original size:43 final size:43
Alignment explanation
Indices: 9278678--9278990 Score: 416
Period size: 43 Copynumber: 7.3 Consensus size: 43
9278668 CGCTATTGTC
* *
9278678 AACGCCGCTATAGATCAGGACCTTTAGCGGCACTTTTCACACA
1 AACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCCACA
9278721 AACGCCGCTATAGATCAGGACCTTTAGCGGCGC-TTTCCCACA
1 AACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCCACA
*
9278763 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCACA
1 AACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCCACA
* * ** * *
9278806 AACACCGCTATAGATTAGGGTCTTTAGCTGCGCTTTT-TCACA
1 AACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCCACA
* * *
9278848 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCTAAA
1 AACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCCACA
* *
9278891 AACGCCGCTATAGCTCAGGATCTTTAGCGGCGCTTTTCCCACA
1 AACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCCACA
* * ***
9278934 AACGCTGCTATAGGTCAAGG-CCTTTAGCGGCGCTTTTTTTACA
1 AACGCCGCTATAGATC-AGGACCTTTAGCGGCGCTTTTCCCACA
*
9278977 AACGCCACTATAGA
1 AACGCCGCTATAGA
9278991 CCAAAGCTTT
Statistics
Matches: 234, Mismatches: 33, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
42 75 0.32
43 156 0.67
44 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (43 bp):
AACGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCCACA
Found at i:9278785 original size:85 final size:84
Alignment explanation
Indices: 9278678--9278990 Score: 428
Period size: 85 Copynumber: 3.7 Consensus size: 84
9278668 CGCTATTGTC
* * *
9278678 AACGCCGCTATAGATCAGGACCTTTAGCGGCACTTTTCACACAAACGCCGCTATAGATCAGGACC
1 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTC-CACAAACGCCGCTATAGATCAGGATC
9278743 TTTAGCGGCGCTTTCCCACA
65 TTTAGCGGCGCTTTCCCACA
* * *
9278763 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCACAAACACCGCTATAGATTAGGGTC
1 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTT-CCACAAACGCCGCTATAGATCAGGATC
* **
9278828 TTTAGCTGCGCTTTTTCACA
65 TTTAGCGGCGCTTTCCCACA
* *
9278848 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCTAAAAACGCCGCTATAGCTCAGGATC
1 AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCC-ACAAACGCCGCTATAGATCAGGATC
9278913 TTTAGCGGCGCTTTTCCCACA
65 TTTAGCGGCGC-TTTCCCACA
* * * ** *
9278934 AACGCTGCTATAGGTCAAGGCCTTTAGCGGCGCTTTTTTTACAAACGCCACTATAGA
1 AACGCCGCTATAGATCAAGACCTTTAGCGGCGC-TTTTCCACAAACGCCGCTATAGA
9278991 CCAAAGCTTT
Statistics
Matches: 199, Mismatches: 25, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
84 2 0.01
85 141 0.71
86 52 0.26
87 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (84 bp):
AACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCACAAACGCCGCTATAGATCAGGATCT
TTAGCGGCGCTTTCCCACA
Found at i:9278916 original size:128 final size:127
Alignment explanation
Indices: 9278682--9279024 Score: 436
Period size: 128 Copynumber: 2.7 Consensus size: 127
9278672 ATTGTCAACG
* * * *
9278682 CCGCTATAGATCAGGACCTTTAGCGGCACTTTTCACACAAACGCCGCTATAGATCAGGACCTTTA
1 CCGCTATAGATCAGGGCCTTTAGCGGCGCTTTT-TCACAAACGCCGCTATAGATCAAGACCTTTA
*
9278747 GCGGCGCTTTCCCACAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCACAAACA
65 GCGGCGCTTTCCCAAAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCACAAACA
* * *
9278810 CCGCTATAGATTAGGGTCTTTAGCTGCGCTTTTTCACAAACGCCGCTATAGATCAAGACCTTTAG
1 CCGCTATAGATCAGGGCCTTTAGCGGCGCTTTTTCACAAACGCCGCTATAGATCAAGACCTTTAG
* * * * *
9278875 CGGCGCTTTTCCTAAAAACGCCGCTATAGCTCAGGATCTTTAGCGGCGCTTTTCCCACAAACG
66 CGGCGC-TTTCCCAAAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCACAAACA
* * * * * * *
9278938 CTGCTATAGGTCAAGGCCTTTAGCGGCGCTTTTTTTACAAACGCCACTATAGACCAA-AGCTTTA
1 CCGCTATAGATCAGGGCCTTTAGCGGCGC-TTTTTCACAAACGCCGCTATAGATCAAGACCTTTA
** *
9279002 GCAACGCTTCTCGCAAAAACGCC
65 GCGGCGCTT-TCCCAAAAACGCC
9279025 ACTAAAAACA
Statistics
Matches: 185, Mismatches: 27, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
127 38 0.21
128 123 0.66
129 24 0.13
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (127 bp):
CCGCTATAGATCAGGGCCTTTAGCGGCGCTTTTTCACAAACGCCGCTATAGATCAAGACCTTTAG
CGGCGCTTTCCCAAAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTCCCACAAACA
Found at i:9283162 original size:16 final size:16
Alignment explanation
Indices: 9283134--9283166 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9283124 TCTCTTTTAC
9283134 AATTATATAATAAATT
1 AATTATATAATAAATT
9283150 AATTA-ATATATAAATT
1 AATTATATA-ATAAATT
9283166 A
1 A
9283167 GAAAACACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.19
16 13 0.81
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AATTATATAATAAATT
Found at i:9283300 original size:15 final size:14
Alignment explanation
Indices: 9283275--9283309 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
9283265 CCCCAACATT
*
9283275 TAAACCATAATCCC
1 TAAACCATAATCCA
9283289 TAAACTCATAATCCA
1 TAAAC-CATAATCCA
9283304 TAAACC
1 TAAACC
9283310 TTAAAATGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAACCATAATCCA
Found at i:9283356 original size:14 final size:14
Alignment explanation
Indices: 9283334--9283372 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
9283324 CCTAAACATT
* *
9283334 AAACTCTAAACCAT
1 AAACCCTAAACCAA
*
9283348 ATACCCTAAACCAA
1 AAACCCTAAACCAA
9283362 AAACCCTAAAC
1 AAACCCTAAAC
9283373 TATAGTGATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.51, C:0.33, G:0.00, T:0.15
Consensus pattern (14 bp):
AAACCCTAAACCAA
Found at i:9285356 original size:25 final size:24
Alignment explanation
Indices: 9285317--9285365 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
9285307 TACTTGGGTA
*
9285317 CATTTTCCATCAATTCATCTTTTG
1 CATTTTCCATCAATTCATCCTTTG
*
9285341 CATTTTACCTTCAATTCATCCTTTG
1 CATTTT-CCATCAATTCATCCTTTG
9285366 TCATAGAACG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 6 0.27
25 16 0.73
ACGTcount: A:0.20, C:0.27, G:0.04, T:0.49
Consensus pattern (24 bp):
CATTTTCCATCAATTCATCCTTTG
Found at i:9286676 original size:6 final size:6
Alignment explanation
Indices: 9286665--9286691 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
9286655 GTTCCCTTAT
9286665 TTTTCC TTTTCC TTTTCC TTTTCC TTT
1 TTTTCC TTTTCC TTTTCC TTTTCC TTT
9286692 ATCTCTTAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (6 bp):
TTTTCC
Found at i:9294949 original size:19 final size:20
Alignment explanation
Indices: 9294919--9294969 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 20
9294909 TCTCAACAAA
9294919 AATTTTTAAAAAATC-AAAAT
1 AATTTTT-AAAAATCTAAAAT
9294939 AATTTTT-AAAATCTAAAAT
1 AATTTTTAAAAATCTAAAAT
*
9294958 -ATTTATAAAAAT
1 AATTTTTAAAAAT
9294970 TTCAAAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 11 0.39
19 10 0.36
20 7 0.25
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (20 bp):
AATTTTTAAAAATCTAAAAT
Found at i:9295019 original size:15 final size:16
Alignment explanation
Indices: 9294993--9295026 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
9294983 TTTTAAAACT
9294993 ATAAAAATTTCAAAAA
1 ATAAAAATTTCAAAAA
9295009 ATAAAAA-TTCAAAAA
1 ATAAAAATTTCAAAAA
9295024 ATA
1 ATA
9295027 TATATAAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.24
Consensus pattern (16 bp):
ATAAAAATTTCAAAAA
Found at i:9296248 original size:29 final size:29
Alignment explanation
Indices: 9296189--9296248 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
9296179 TATGGTTTAA
* *
9296189 TGTGCAATTGTATACATGAACTTTAGTTT
1 TGTGCAATTGTATACATGAAATTTAGATT
* *
9296218 TGTGCAATTTTATACATGAAATTTTGATT
1 TGTGCAATTGTATACATGAAATTTAGATT
9296247 TG
1 TG
9296249 ATCCAGTTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.28, C:0.08, G:0.17, T:0.47
Consensus pattern (29 bp):
TGTGCAATTGTATACATGAAATTTAGATT
Found at i:9296469 original size:29 final size:30
Alignment explanation
Indices: 9296386--9296470 Score: 84
Period size: 31 Copynumber: 2.8 Consensus size: 30
9296376 AATTAAATCA
* * * *
9296386 AAATTATAGTTTCAAGTATACATTTGAACC
1 AAATTAAAGTTTCATGTATATAATTGAACC
* *
9296416 ACAATTAAAGTTTCACT-TGTATAATTGTACC
1 A-AATTAAAGTTTCA-TGTATATAATTGAACC
9296447 AAATTAAAG-TTCATGTATATAATT
1 AAATTAAAGTTTCATGTATATAATT
9296471 ACACATAAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
28 1 0.02
29 12 0.27
30 9 0.20
31 23 0.51
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.39
Consensus pattern (30 bp):
AAATTAAAGTTTCATGTATATAATTGAACC
Found at i:9301069 original size:19 final size:20
Alignment explanation
Indices: 9301039--9301089 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 20
9301029 TCTCAACAAA
9301039 AATTTTTAAAAAATC-AAAAT
1 AATTTTT-AAAAATCTAAAAT
9301059 AATTTTT-AAAATCTAAAAT
1 AATTTTTAAAAATCTAAAAT
*
9301078 -ATTTATAAAAAT
1 AATTTTTAAAAAT
9301090 TTCAAAATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 11 0.39
19 10 0.36
20 7 0.25
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (20 bp):
AATTTTTAAAAATCTAAAAT
Found at i:9301141 original size:15 final size:16
Alignment explanation
Indices: 9301115--9301144 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
9301105 TTTTTAAATT
9301115 ATAAAAATTTCAAAAA
1 ATAAAAATTTCAAAAA
9301131 ATAAAAA-TTCAAAA
1 ATAAAAATTTCAAAA
9301145 TATATATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (16 bp):
ATAAAAATTTCAAAAA
Found at i:9302302 original size:11 final size:11
Alignment explanation
Indices: 9302286--9302317 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
9302276 ATGAGGGTGT
9302286 GTAGAACAATA
1 GTAGAACAATA
9302297 GTAGAACAATA
1 GTAGAACAATA
*
9302308 GTAGTACAAT
1 GTAGAACAAT
9302318 CTAGTTAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.50, C:0.09, G:0.19, T:0.22
Consensus pattern (11 bp):
GTAGAACAATA
Found at i:9302492 original size:31 final size:29
Alignment explanation
Indices: 9302457--9302526 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 29
9302447 ATCCCGCAAC
*
9302457 TATACATGAACTATAGTTTAATGTGCAATTG
1 TATACATGAACT-TAG-ATAATGTGCAATTG
* * *
9302488 TATACATGAACTTTGATATTGTGCAATTT
1 TATACATGAACTTAGATAATGTGCAATTG
9302517 TATACATGAA
1 TATACATGAA
9302527 ATTTTGATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 21 0.60
30 2 0.06
31 12 0.34
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.40
Consensus pattern (29 bp):
TATACATGAACTTAGATAATGTGCAATTG
Found at i:9303079 original size:18 final size:17
Alignment explanation
Indices: 9303049--9303083 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
9303039 CCTTTCTTCT
9303049 TTTACACATTTATATAC
1 TTTACACATTTATATAC
*
9303066 TTTACATATATTATATAC
1 TTTACACAT-TTATATAC
9303084 GTATGGCAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.37, C:0.14, G:0.00, T:0.49
Consensus pattern (17 bp):
TTTACACATTTATATAC
Found at i:9304806 original size:20 final size:19
Alignment explanation
Indices: 9304769--9304806 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
9304759 TATATGTTCA
9304769 AACATGAAACCATTTTTTT
1 AACATGAAACCATTTTTTT
9304788 AACATGAAACCATTTTTTT
1 AACATGAAACCATTTTTTT
9304807 GACTGATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.05, T:0.42
Consensus pattern (19 bp):
AACATGAAACCATTTTTTT
Found at i:9310240 original size:21 final size:19
Alignment explanation
Indices: 9310175--9310268 Score: 152
Period size: 19 Copynumber: 4.8 Consensus size: 19
9310165 AATTTTTGAG
9310175 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
9310194 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
9310213 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
9310232 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
9310253 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
9310269 AGATATGATT
Statistics
Matches: 70, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
19 51 0.73
21 19 0.27
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:9310250 original size:40 final size:38
Alignment explanation
Indices: 9310175--9310275 Score: 152
Period size: 40 Copynumber: 2.7 Consensus size: 38
9310165 AATTTTTGAG
9310175 GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
*
9310213 GATATGCAATCTTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATG--ATATGCAATCCTAGATAT
*
9310253 GATATGTAATCTTAGA-A-GATATG
1 GATATGCAATCTTAGATATGATATG
9310276 ATTTTGTAAT
Statistics
Matches: 59, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
36 5 0.08
38 21 0.36
39 1 0.02
40 32 0.54
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.36
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
Found at i:9310287 original size:23 final size:22
Alignment explanation
Indices: 9310207--9310291 Score: 81
Period size: 21 Copynumber: 4.0 Consensus size: 22
9310197 ATGCAATCCT
*
9310207 AGATATGATATGCAATCTTAG-
1 AGATATGATATGTAATCTTAGA
* *
9310228 ATATGAT-ATATGCAATCTT---
1 AGAT-ATGATATGTAATCTTAGA
9310247 AGATATGATATGTAATCTTAGA
1 AGATATGATATGTAATCTTAGA
*
9310269 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGTAATCTTAGA
9310292 GATTTAATTT
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
18 2 0.04
19 14 0.26
21 15 0.28
22 10 0.19
23 13 0.24
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.39
Consensus pattern (22 bp):
AGATATGATATGTAATCTTAGA
Found at i:9310301 original size:22 final size:23
Alignment explanation
Indices: 9310257--9310301 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
9310247 AGATATGATA
*
9310257 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
9310280 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
9310302 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:9311456 original size:19 final size:20
Alignment explanation
Indices: 9311417--9311456 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
9311407 TTCTAGGCCT
* *
9311417 TTGTAATATTTATTATTGCA
1 TTGTAATATTTAATATAGCA
9311437 TTGT-ATATTTAATATAGCA
1 TTGTAATATTTAATATAGCA
9311456 T
1 T
9311457 CACATCATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.53
Consensus pattern (20 bp):
TTGTAATATTTAATATAGCA
Found at i:9311817 original size:98 final size:98
Alignment explanation
Indices: 9311697--9311887 Score: 355
Period size: 98 Copynumber: 1.9 Consensus size: 98
9311687 CTAAAAACAA
* *
9311697 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
9311762 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
*
9311795 TAAAGGAAATATTCCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
9311860 TTAAATCTTGGATAAGTGGATGTTCTTT
66 TTAAATCTTGGATAAGTGGATGTTCTTT
9311888 CAAAATTTTA
Statistics
Matches: 90, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.27, C:0.10, G:0.25, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:9315901 original size:12 final size:12
Alignment explanation
Indices: 9315884--9315916 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
9315874 AGTTCAGATT
9315884 CAAAAAAAAAAA
1 CAAAAAAAAAAA
*
9315896 CAAAAACAAAAA
1 CAAAAAAAAAAA
9315908 CAAAAAAAA
1 CAAAAAAAA
9315917 TGAAAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (12 bp):
CAAAAAAAAAAA
Found at i:9317434 original size:132 final size:132
Alignment explanation
Indices: 9317255--9318056 Score: 1309
Period size: 132 Copynumber: 6.0 Consensus size: 132
9317245 TTGCATTGAC
*
9317255 AGTGGAGCAGATCGAAGATGGCGAATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
9317320 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAACCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
9317385 GT
131 GT
*
9317387 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGTAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
9317452 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
*
9317517 GA
131 GT
* *
9317519 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCTTCTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* * *
9317584 ATAATTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATATTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
*
9317649 AT
131 GT
* * *
9317651 AGTGGGGCAGATCGAAGATGGCGGATTTTACCTCCCTATGGTTATAGTGGAGCACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* *
9317716 GTAATTCTACTTTCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATTTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
9317781 GT
131 GT
* *
9317783 AGTGGAGCAGATCGAAGGTGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
*
9317848 GTAATTCTACTTCCCTGGACAACAGTGGAATAAATTGAAGATTTCAGATCTTATCTCCCTAAGCA
66 GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
9317913 GT
131 GT
* *
9317915 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAATGGAGTACATTGAAGCCT
1 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
* ** * *
9317980 CT-CCTCTCAATTCTCTCTGGGGACAACAGTGGAATATATTGAAGATTTCAGATCTTATCTCCCT
66 GTAATTCT-ACTTC-C-CT--GGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCT
* *
9318044 AAGAATT
126 AAGCAGT
9318051 AGTGGA
1 AGTGGA
9318057 ATAGATTGAA
Statistics
Matches: 624, Mismatches: 41, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
131 3 0.00
132 564 0.90
133 1 0.00
134 2 0.00
136 54 0.09
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCA
GTAATTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA
GT
Found at i:9323942 original size:1 final size:1
Alignment explanation
Indices: 9323936--9323994 Score: 55
Period size: 1 Copynumber: 59.0 Consensus size: 1
9323926 GTTCAGATTC
* * * * * * *
9323936 AAAAAAAAAACAAAAAAACAAAAAAAACAACAAAAAAAAACAAAAATAAAACAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
9323995 TGAAAGTGAA
Statistics
Matches: 44, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.88, C:0.10, G:0.00, T:0.02
Consensus pattern (1 bp):
A
Found at i:9323961 original size:20 final size:19
Alignment explanation
Indices: 9323936--9323994 Score: 82
Period size: 20 Copynumber: 2.9 Consensus size: 19
9323926 GTTCAGATTC
9323936 AAAAAAAAAACAAAAAAACA
1 AAAAAAAAAACAAAAAAA-A
*
9323956 AAAAAAACAACAAAAAAAA
1 AAAAAAAAAACAAAAAAAA
9323975 ACAAAAATAAAACAAAAAAA
1 A-AAAAA-AAAACAAAAAAA
9323995 TGAAAGTGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
19 2 0.06
20 22 0.63
21 11 0.31
ACGTcount: A:0.88, C:0.10, G:0.00, T:0.02
Consensus pattern (19 bp):
AAAAAAAAAACAAAAAAAA
Found at i:9325846 original size:132 final size:132
Alignment explanation
Indices: 9325391--9327888 Score: 4208
Period size: 132 Copynumber: 18.9 Consensus size: 132
9325381 TTGACAGCGA
* * * *
9325391 AGCAGATTGAAGATGGCGGATTTTACCTCCTTGTGGTTACAGTGGAGTACATTGAAGCTAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
*
9325456 TCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
9325521 -G
131 GG
*
9325522 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGTAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
9325587 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCCTAAAGCAGTA
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCT-CCCT-AAGCAGTA
9325652 GTGG
129 GTGG
9325656 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
* * * * *
9325721 TCAACTTCCCTGGGCAACAGTAGAATAGATTGAAGATTTCAAATATTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
9325786 GG
131 GG
* * * *
9325788 AGCAGATCGAAGATGGCGTATTTTACCTCCCTGCGATTATAGTGGAGTACATTGAAGCCCGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
* * *
9325853 TCTACTTCCCTGGACAACAGTGGAACAAATTGAAGATTTCAGATCTTATCTCCCTAAGCAATAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
9325918 GG
131 GG
*
9325920 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAATAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
9325985 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
9326050 GG
131 GG
* *
9326052 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACAGTGAAGGCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
*
9326117 TCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
9326182 GG
131 GG
* * * *
9326184 AGCAGATCGAAGATGGCGTATTTTACCTTCCTGTGGTTATAGTCGAGTACATTGAAGGCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
* * *
9326249 TCTACTTCCCTGGGCAATAGTGGAATAGATTGAAAATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
9326314 GG
131 GG
* * * *
9326316 AACAGATCGAAGATGGCGGATTTTACCTCCCTGCGGTTATAATGGATTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
*
9326381 TCTACTTCCCTGGACAACAGTGGAATAAATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
9326446 GG
131 GG
9326448 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
*
9326513 TCTACTTCCCTGGACAACAGTGAAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
9326578 GG
131 GG
* *
9326580 AGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGGCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
*
9326645 TCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
9326710 GG
131 GG
* * * * *
9326712 AGTAGATCGAAGATGGCAGATTTTACCTCTCTGTGATGATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
* * *
9326777 TCTACTTTCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATTTCCCTAAGTAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
9326842 GG
131 GG
* * *
9326844 AGCAGATCGAAGATGGCGGATTTTACCTCCATGCGGTTATAGTGGAGTACATTAAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
* * *
9326909 TCTACTTCTCTGGACAACAGTGGAATAAATTGAAGATTTCAGATCTTATCTCCCTAAGCAGAAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
9326974 GG
131 GG
**
9326976 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGTTGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
* *
9327041 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCCTATCTCCCTAAGCAGTGGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
9327106 GG
131 GG
* *
9327108 AGCAGATCGAAGATGGCGGATTTTGCCTCCCTGTGGTTATAGTGGAGTACATTGAAGGCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
*
9327173 TCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
9327238 GG
131 GG
* *
9327240 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGTAGTACATTGAAGGCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
9327305 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
9327370 GG
131 GG
* *
9327372 AGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGGCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
*
9327437 TCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
9327502 GG
131 GG
*
9327504 AGCAGATCGAAGATGGCGGATTTTTCCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
* * *
9327569 TCTACTTCCCTGGACAATAGTGGAATGGATTGAAGATTTCAGATATTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
9327634 GG
131 GG
*
9327636 AGCAGATCGAAGATGGCGGATTTTACTCTTCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAA
1 AGCAGATCGAAGATGGCGGATTTTAC-CTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAA
* * * * * * *
9327701 TTTTACTTCCTTGGGCAACTGTGGAATAGATTGAAGATTTCATATTTTATCTCCTTAAGCAGTAG
65 TTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAG
9327766 TGG
130 TGG
* * *
9327769 AGTAGATAGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
* * *
9327834 TCTACTTCCCTGGGCAACAGTGGAATTGATTGAAGATTGTAAG-TCTTATCTCCCT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATT-TCAGATCTTATCTCCCT
9327889 GTAGTTGCAG
Statistics
Matches: 2222, Mismatches: 140, Indels: 9
0.94 0.06 0.00
Matches are distributed among these distances:
131 110 0.05
132 1865 0.84
133 136 0.06
134 111 0.05
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (132 bp):
AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
GG
Found at i:9325950 original size:44 final size:43
Alignment explanation
Indices: 9325770--9325951 Score: 100
Period size: 44 Copynumber: 4.1 Consensus size: 43
9325760 CAAATATTAT
* *
9325770 CTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGTATTTTAC
1 CTCCCT-AGCAATAGTGGAGCAGATCGAAGATGGCGGATTTTAC
* * * ** * *
9325814 CTCCCT-GCGATTATAGTGGAGTACATTGAAG--CCCGTAATTCTAC
1 CTCCCTAGC-A--ATAGTGGAGCAGATCGAAGATGGCG-GATTTTAC
* * * * * * ** * * *
9325858 TTCCCTGGACAACAGTGGAACAAATTGAAGATTTCAGATCTTAT
1 CTCCCTAG-CAATAGTGGAGCAGATCGAAGATGGCGGATTTTAC
9325902 CTCCCTAAGCAATAGTGGAGCAGATCGAAGATGGCGGATTTTAC
1 CTCCCT-AGCAATAGTGGAGCAGATCGAAGATGGCGGATTTTAC
9325946 CTCCCT
1 CTCCCT
9325952 GTGGTTATAG
Statistics
Matches: 98, Mismatches: 31, Indels: 18
0.67 0.21 0.12
Matches are distributed among these distances:
42 2 0.02
43 18 0.18
44 58 0.59
45 19 0.19
46 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (43 bp):
CTCCCTAGCAATAGTGGAGCAGATCGAAGATGGCGGATTTTAC
Found at i:9326711 original size:44 final size:44
Alignment explanation
Indices: 9326003--9326732 Score: 134
Period size: 44 Copynumber: 16.6 Consensus size: 44
9325993 CCTGGACAAC
* *
9326003 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATTGCAGATCTTATCTCCCTAAGCAGT
* * * * * * ** *
9326047 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATTGCAGATCTTATCTCCCT-AAG-CAGT
* * ** **
9326092 AGTGGAGTACAGTGAAG---GCAGTAAT-TCTA-CTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGATTGCAG--ATCT-TATC-TCCCTAAGCAGT
* *
9326135 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATTGCAGATCTTATCTCCCTAAGCAGT
* * * * * * ** *
9326179 AGTGGAGCAGATCGAAGATGGC-GTATTTTACCTTCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATTGCAG-ATCTTATCTCCCT-AAG-CAGT
* * ** *
9326224 AGTCGAGTACATTGAAG---GCAGTAAT-TCTA-CTTCCCTGGGCAAT
1 AGTGGAGTAGATTGAAGATTGCAG--ATCT-TATC-TCCCTAAGCAGT
* * *
9326267 AGTGGAATAGATTGAAAATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATTGCAGATCTTATCTCCCTAAGCAGT
** * * * * * *
9326311 AGTGGAACAGATCGAAGATGGCGGATTTTACCTCCCT--GCGGTTAT
1 AGTGGAGTAGATTGAAGATTGCAGATCTTATCTCCCTAAGCAG---T
* * * *** * * **
9326356 AATGGATTACATTGAAGCCAGTA-AT-TCTA-CTTCCCT-GGACAAC
1 AGTGGAGTAGATTGAAGATTGCAGATCT-TATC-TCCCTAAG-CAGT
* * *
9326399 AGTGGAATAAATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATTGCAGATCTTATCTCCCTAAGCAGT
* * * * * * ** *
9326443 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATTGCAGATCTTATCTCCCT-AAG-CAGT
* *** * * **
9326488 AGTGGAGTACATTGAAGCCAGTA-AT-TCTA-CTTCCCT-GGACAAC
1 AGTGGAGTAGATTGAAGATTGCAGATCT-TATC-TCCCTAAG-CAGT
* * *
9326531 AGTGAAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATTGCAGATCTTATCTCCCTAAGCAGT
* * * * * ** *
9326575 AGTGGAGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTA-T
1 AGTGGAGTAGATTGAAGATTGCAGATCTTATCTCCCT-AAG-CAGT
* ** **
9326620 AGTGGAGTACATTGAAG---GCAGTAAT-TCTA-CTTCCCTGGGCAAC
1 AGTGGAGTAGATTGAAGATTGCAG--ATCT-TATC-TCCCTAAGCAGT
* *
9326663 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGATTGCAGATCTTATCTCCCTAAGCAGT
* *
9326707 AGTGGAGTAGATCGAAGATGGCAGAT
1 AGTGGAGTAGATTGAAGATTGCAGAT
9326733 TTTACCTCTC
Statistics
Matches: 480, Mismatches: 149, Indels: 114
0.65 0.20 0.15
Matches are distributed among these distances:
42 18 0.04
43 91 0.19
44 267 0.56
45 90 0.19
46 14 0.03
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (44 bp):
AGTGGAGTAGATTGAAGATTGCAGATCTTATCTCCCTAAGCAGT
Found at i:9327516 original size:44 final size:44
Alignment explanation
Indices: 9327331--9327517 Score: 116
Period size: 44 Copynumber: 4.2 Consensus size: 44
9327321 ACAGTGGAAT
*
9327331 AGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGC
1 AGATTGAAGATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGC
* * * * ** * *
9327375 AGATCGAAGATGGCAGATTTTACCTCCCTGTGGTTA-TAGTGGAGT
1 AGATTGAAGATTGCAGATCTTATCTCCCT-AAG-CAGTAGTGGAGC
* ** ** **
9327420 ACATTGAAG---GCAGTAAT-TCTA-CTTCCCTGGGCAACAGTGGAAT
1 AGATTGAAGATTGCAG--ATCT-TATC-TCCCTAAGCAGTAGTGGAGC
*
9327463 AGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGC
1 AGATTGAAGATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGC
*
9327507 AGATCGAAGAT
1 AGATTGAAGAT
9327518 GGCGGATTTT
Statistics
Matches: 107, Mismatches: 24, Indels: 24
0.69 0.15 0.15
Matches are distributed among these distances:
42 5 0.05
43 19 0.18
44 61 0.57
45 18 0.17
46 4 0.04
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (44 bp):
AGATTGAAGATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGC
Found at i:9328141 original size:19 final size:19
Alignment explanation
Indices: 9328117--9328210 Score: 143
Period size: 19 Copynumber: 4.8 Consensus size: 19
9328107 AATTTTTGAG
9328117 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
9328136 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
9328155 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
9328174 GATATATGAAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
9328195 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
9328211 AGATATGATT
Statistics
Matches: 69, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
19 51 0.74
21 18 0.26
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:9328192 original size:40 final size:38
Alignment explanation
Indices: 9328117--9328218 Score: 145
Period size: 40 Copynumber: 2.7 Consensus size: 38
9328107 AATTTTTGAG
*
9328117 GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATATGATATGAAATCCTAGATAT
*
9328155 GATATGCAATCTTAGATATGATATATGAAATCTTAGATAT
1 GATATGCAATCTTAGATATG--ATATGAAATCCTAGATAT
*
9328195 GATATGTAATCTTAGA-A-GATATGA
1 GATATGCAATCTTAGATATGATATGA
9328219 TTTTGTAATC
Statistics
Matches: 59, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
36 6 0.10
38 21 0.36
39 1 0.02
40 31 0.53
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.35
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGAAATCCTAGATAT
Found at i:9328229 original size:23 final size:22
Alignment explanation
Indices: 9328149--9328233 Score: 81
Period size: 19 Copynumber: 4.0 Consensus size: 22
9328139 ATGCAATCCT
*
9328149 AGATATGATATGCAATCTTAG-
1 AGATATGATATGTAATCTTAGA
* *
9328170 ATATGAT-ATATGAAATCTT---
1 AGAT-ATGATATGTAATCTTAGA
9328189 AGATATGATATGTAATCTTAGA
1 AGATATGATATGTAATCTTAGA
*
9328211 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGTAATCTTAGA
9328234 GATTTAATTT
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
18 2 0.04
19 14 0.26
21 14 0.26
22 10 0.19
23 13 0.25
ACGTcount: A:0.39, C:0.06, G:0.16, T:0.39
Consensus pattern (22 bp):
AGATATGATATGTAATCTTAGA
Found at i:9328243 original size:22 final size:23
Alignment explanation
Indices: 9328199--9328243 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
9328189 AGATATGATA
*
9328199 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
9328222 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
9328244 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:9328750 original size:3 final size:3
Alignment explanation
Indices: 9328742--9328813 Score: 103
Period size: 3 Copynumber: 24.0 Consensus size: 3
9328732 TGTTAATGTA
9328742 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
9328790 ATT -TC A-T ATGT AATT ATT ATT ATT
1 ATT ATT ATT AT-T -ATT ATT ATT ATT
9328814 TTAGCTATAT
Statistics
Matches: 63, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
2 2 0.03
3 57 0.90
4 2 0.03
5 2 0.03
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:9329804 original size:98 final size:98
Alignment explanation
Indices: 9329663--9329857 Score: 320
Period size: 98 Copynumber: 2.0 Consensus size: 98
9329653 CTAAAAACAA
* * *
9329663 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
*
9329728 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGCTCTTTTAAAG
* *
9329761 TAAATGAAATATTCTGAGTTTGAGATTCTAGAA-GAATCGTGCCCTAACGTATTGGGTGTGATTT
1 TAAAGGAAATATTCCGAGTTTGAGATTCTA-AAGGAATCGTGCCCTAACGTATTGGGTGTGATTT
9329825 CTTAAATCTTGGATAAGTGGATGCTCTTTTAAA
65 CTTAAATCTTGGATAAGTGGATGCTCTTTTAAA
9329858 ATTTTATTGT
Statistics
Matches: 90, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
98 88 0.98
99 2 0.02
ACGTcount: A:0.29, C:0.10, G:0.23, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGCTCTTTTAAAG
Found at i:9330291 original size:12 final size:12
Alignment explanation
Indices: 9330274--9330298 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9330264 TTATGTAATT
9330274 TATATACATATC
1 TATATACATATC
9330286 TATATACATATC
1 TATATACATATC
9330298 T
1 T
9330299 TTTAATTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (12 bp):
TATATACATATC
Found at i:9335331 original size:18 final size:19
Alignment explanation
Indices: 9335290--9335331 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
9335280 ATAAAAAAAG
* *
9335290 AAAAAAATATGAAATAGAA
1 AAAAAAAGATAAAATAGAA
*
9335309 TAAAAAAGATAAAAT-GAA
1 AAAAAAAGATAAAATAGAA
9335327 AAAAA
1 AAAAA
9335332 CTTACACCAT
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.14
Consensus pattern (19 bp):
AAAAAAAGATAAAATAGAA
Found at i:9338524 original size:18 final size:17
Alignment explanation
Indices: 9338498--9338532 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
9338488 AATATTAAGA
*
9338498 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
9338515 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
9338533 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:9338752 original size:44 final size:45
Alignment explanation
Indices: 9338689--9338785 Score: 126
Period size: 44 Copynumber: 2.2 Consensus size: 45
9338679 CTATTACACC
* *
9338689 TCCATTCCATTCAACCAAACACA-AGAA-TACTATTTCGCCTCTAT
1 TCCATTACATTCAACCAAACA-ATAGAATTACTATTACGCCTCTAT
* **
9338733 TCCATTACATTCAACCAAACAATTGAATTGTTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACAATAGAATTACTATTACGCCTCTAT
9338778 TCCATTAC
1 TCCATTAC
9338786 GCCTCTATTC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.50
45 22 0.48
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (45 bp):
TCCATTACATTCAACCAAACAATAGAATTACTATTACGCCTCTAT
Found at i:9338786 original size:16 final size:16
Alignment explanation
Indices: 9338765--9338845 Score: 144
Period size: 16 Copynumber: 5.1 Consensus size: 16
9338755 TTGAATTGTT
9338765 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
9338781 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
*
9338797 ATTATGCCTCTATTCC
1 ATTACGCCTCTATTCC
*
9338813 ATTACACCTCTATTCC
1 ATTACGCCTCTATTCC
9338829 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
9338845 A
1 A
9338846 ATACAGCGAA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 61 1.00
ACGTcount: A:0.21, C:0.36, G:0.05, T:0.38
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:9383930 original size:42 final size:42
Alignment explanation
Indices: 9383832--9383931 Score: 137
Period size: 42 Copynumber: 2.4 Consensus size: 42
9383822 CTATATGAAT
** * *
9383832 GGCACTAAGTGTGTAAAATTAAAATGATGATGTTGAATAATA
1 GGCACTAAGTGTGCGAAATTAAAATAATGATGTTGAATAACA
* * *
9383874 GGCACTAAGTGTGCGGAATTATAATAATGATGTTGAATAACG
1 GGCACTAAGTGTGCGAAATTAAAATAATGATGTTGAATAACA
9383916 GGCACTAAGTGTGCGA
1 GGCACTAAGTGTGCGA
9383932 TACCGAGAGT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.37, C:0.09, G:0.26, T:0.28
Consensus pattern (42 bp):
GGCACTAAGTGTGCGAAATTAAAATAATGATGTTGAATAACA
Found at i:9385143 original size:16 final size:16
Alignment explanation
Indices: 9385122--9385166 Score: 81
Period size: 16 Copynumber: 2.8 Consensus size: 16
9385112 TTTGTAAGTT
*
9385122 CAGGCTTTATGCCTAG
1 CAGGCTTTGTGCCTAG
9385138 CAGGCTTTGTGCCTAG
1 CAGGCTTTGTGCCTAG
9385154 CAGGCTTTGTGCC
1 CAGGCTTTGTGCC
9385167 GGTGAATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.13, C:0.27, G:0.29, T:0.31
Consensus pattern (16 bp):
CAGGCTTTGTGCCTAG
Found at i:9385195 original size:41 final size:41
Alignment explanation
Indices: 9385138--9385334 Score: 259
Period size: 41 Copynumber: 4.8 Consensus size: 41
9385128 TTATGCCTAG
*
9385138 CAGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTGAATTATAT
1 CAGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTGAAATATAT
* * *
9385179 CAGGCTTTATGCCTAGCAGGCTTTGTACCGGTGAATTATAT
1 CAGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTGAAATATAT
* * * *
9385220 CAGACTTTATGTCTAGCAGGCTTTGTGCCGGTGAAATGTAT
1 CAGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTGAAATATAT
* * * *
9385261 CGGGCTTGGTGCCTAGCAGGCTTTATGCCGGTGAAATGTAT
1 CAGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTGAAATATAT
* * *
9385302 CGGGCTTGGTGCCTAGCAGGCTTTATGCCGGTG
1 CAGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTG
9385335 TTATATACAA
Statistics
Matches: 143, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 143 1.00
ACGTcount: A:0.18, C:0.20, G:0.30, T:0.32
Consensus pattern (41 bp):
CAGGCTTTGTGCCTAGCAGGCTTTGTGCCGGTGAAATATAT
Found at i:9390893 original size:14 final size:13
Alignment explanation
Indices: 9390867--9390905 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
9390857 GAAAGCAAAT
9390867 AAAAAAATCAATGA
1 AAAAAAAT-AATGA
9390881 AACAAAAATAATGA
1 AA-AAAAATAATGA
*
9390895 AATAAAATAAT
1 AAAAAAATAAT
9390906 CAAAGGATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 8 0.35
14 9 0.39
15 6 0.26
ACGTcount: A:0.72, C:0.05, G:0.05, T:0.18
Consensus pattern (13 bp):
AAAAAAATAATGA
Found at i:9394094 original size:15 final size:15
Alignment explanation
Indices: 9394074--9394103 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9394064 TACATGTAGA
9394074 AAAAATAATAAAAAT
1 AAAAATAATAAAAAT
*
9394089 AAAAATATTAAAAAT
1 AAAAATAATAAAAAT
9394104 TTATAAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
AAAAATAATAAAAAT
Found at i:9394231 original size:21 final size:21
Alignment explanation
Indices: 9394193--9394236 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
9394183 TATACAGAAT
*
9394193 TATAGAAAATTATTTAAAATA
1 TATAGAAAATCATTTAAAATA
9394214 TATA-AAAATCATTATAAAATA
1 TATAGAAAATCATT-TAAAATA
9394235 TA
1 TA
9394237 AAACTATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (21 bp):
TATAGAAAATCATTTAAAATA
Found at i:9394258 original size:9 final size:8
Alignment explanation
Indices: 9394207--9394294 Score: 59
Period size: 9 Copynumber: 9.6 Consensus size: 8
9394197 GAAAATTATT
9394207 TAAAATATA
1 TAAAA-ATA
9394216 TAAAAATCA
1 TAAAAAT-A
9394225 TTATAAAATA
1 -TA-AAAATA
9394235 TAAAACTATA
1 TAAAA--ATA
*
9394245 AAAAAATCA
1 TAAAAAT-A
9394254 TAAAAACTTA
1 TAAAAA--TA
9394264 TAAAAATA
1 TAAAAATA
9394272 GTAAAAATTA
1 -TAAAAA-TA
*
9394282 TAAAATTA
1 TAAAAATA
9394290 TAAAA
1 TAAAA
9394295 TTCATAAAAT
Statistics
Matches: 66, Mismatches: 3, Indels: 21
0.73 0.03 0.23
Matches are distributed among these distances:
8 16 0.24
9 25 0.38
10 19 0.29
11 6 0.09
ACGTcount: A:0.66, C:0.05, G:0.01, T:0.28
Consensus pattern (8 bp):
TAAAAATA
Found at i:9394265 original size:29 final size:27
Alignment explanation
Indices: 9394198--9394324 Score: 91
Period size: 29 Copynumber: 4.4 Consensus size: 27
9394188 AGAATTATAG
*
9394198 AAAATTATTTAAAATATATAAAAATCATTA
1 AAAATTA--TAAAATATAAAAAAATCA-TA
9394228 TAAAA-TATAAAACTATAAAAAAATCATA
1 -AAAATTATAAAA-TATAAAAAAATCATA
* *
9394256 AAAACTTATAAAA-ATAGTAAAAATTAT-
1 AAAA-TTATAAAATATA-AAAAAATCATA
*
9394283 AAAATTATAAAATTCATAAAATAAATTAT-
1 AAAATTATAAAA-T-ATAAAA-AAATCATA
9394312 AAAATTAGTAAAA
1 AAAATTA-TAAAA
9394325 AATTATAAAA
Statistics
Matches: 83, Mismatches: 4, Indels: 19
0.78 0.04 0.18
Matches are distributed among these distances:
26 8 0.10
27 11 0.13
28 17 0.20
29 36 0.43
30 7 0.08
31 4 0.05
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.31
Consensus pattern (27 bp):
AAAATTATAAAATATAAAAAAATCATA
Found at i:9394284 original size:47 final size:48
Alignment explanation
Indices: 9394209--9394343 Score: 143
Period size: 47 Copynumber: 2.8 Consensus size: 48
9394199 AAATTATTTA
*
9394209 AAATATATAAAAATCATTATAAAA-TATAAAACTATAAAAAAATCAT-AAA-
1 AAAT-TATAAAAAT-AGTA-AAAATTATAAAA-TATAAAAAAATCATAAAAT
* * *
9394258 AACTTATAAAAATAGTAAAAATTATAAAAT-TATAAAATTCATAAAAT
1 AAATTATAAAAATAGTAAAAATTATAAAATATAAAAAAATCATAAAAT
* *
9394305 AAATTATAAAATTAGTAAAAAATTATAAAATATAGAAAA
1 AAATTATAAAAATAGT-AAAAATTATAAAATATAAAAAA
9394344 TTTATTAAAA
Statistics
Matches: 74, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
45 10 0.14
46 8 0.11
47 24 0.32
48 23 0.31
49 9 0.12
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (48 bp):
AAATTATAAAAATAGTAAAAATTATAAAATATAAAAAAATCATAAAAT
Found at i:9394301 original size:9 final size:8
Alignment explanation
Indices: 9394224--9394345 Score: 65
Period size: 8 Copynumber: 14.4 Consensus size: 8
9394214 TATAAAAATC
9394224 ATTATAAA
1 ATTATAAA
9394232 A-TATAAA
1 ATTATAAA
*
9394239 ACTATAAAAAA
1 A-T-T-ATAAA
*
9394250 ATCATAAAA
1 ATTAT-AAA
9394259 ACTTATAAA
1 A-TTATAAA
*
9394268 AATAGTAAAA
1 ATTA-T-AAA
9394278 ATTATAAA
1 ATTATAAA
9394286 ATTATAAA
1 ATTATAAA
9394294 ATTCAT-AA
1 ATT-ATAAA
9394302 A--AT-AA
1 ATTATAAA
9394307 ATTATAAA
1 ATTATAAA
9394315 ATTAGTAAAAA
1 ATTA-T--AAA
9394326 ATTATAAA
1 ATTATAAA
*
9394334 ATATAGAAA
1 AT-TATAAA
9394343 ATT
1 ATT
9394346 TATTAAAAAA
Statistics
Matches: 91, Mismatches: 7, Indels: 32
0.70 0.05 0.25
Matches are distributed among these distances:
5 5 0.05
7 9 0.10
8 33 0.36
9 20 0.22
10 12 0.13
11 12 0.13
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.30
Consensus pattern (8 bp):
ATTATAAA
Found at i:9394309 original size:21 final size:19
Alignment explanation
Indices: 9394283--9394335 Score: 72
Period size: 21 Copynumber: 2.7 Consensus size: 19
9394273 TAAAAATTAT
9394283 AAAATTATAAAATTCA-TAAA
1 AAAATTATAAAATT-AGT-AA
9394303 ATAAATTATAAAATTAGTAA
1 A-AAATTATAAAATTAGTAA
9394323 AAAATTATAAAAT
1 AAAATTATAAAAT
9394336 ATAGAAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
19 12 0.39
20 5 0.16
21 14 0.45
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (19 bp):
AAAATTATAAAATTAGTAA
Found at i:9394328 original size:11 final size:10
Alignment explanation
Indices: 9394190--9394334 Score: 57
Period size: 10 Copynumber: 15.0 Consensus size: 10
9394180 AAATATACAG
*
9394190 AATTATAGAA
1 AATTATAAAA
**
9394200 AATTATTTAA
1 AATTATAAAA
9394210 AATATATAAAA
1 AAT-TATAAAA
9394221 ATCATTAT--AA
1 A--ATTATAAAA
9394231 AA-TAT--AA
1 AATTATAAAA
*
9394238 AACTATAAAAA
1 AATTAT-AAAA
*
9394249 AATCATAAAA
1 AATTATAAAA
*
9394259 ACTTAT-AAA
1 AATTATAAAA
9394268 AA-TAGT-AAA
1 AATTA-TAAAA
9394277 AATTAT--AA
1 AATTATAAAA
9394285 AATTAT--AA
1 AATTATAAAA
9394293 AATTCATAAAATA
1 AATT-AT-AAA-A
9394306 AATTAT--AA
1 AATTATAAAA
9394314 AATTAGTAAAA
1 AATTA-TAAAA
9394325 AATTATAAAA
1 AATTATAAAA
9394335 TATAGAAAAT
Statistics
Matches: 109, Mismatches: 9, Indels: 34
0.72 0.06 0.22
Matches are distributed among these distances:
7 7 0.06
8 26 0.24
9 15 0.14
10 29 0.27
11 19 0.17
12 6 0.06
13 7 0.06
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.31
Consensus pattern (10 bp):
AATTATAAAA
Found at i:9394764 original size:28 final size:28
Alignment explanation
Indices: 9394731--9394791 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
9394721 CAATTTTTAT
* *
9394731 ATTTTTATGAAATTTTAATGATTTATTTG
1 ATTTTTAT-AAATTTTAATAAATTATTTG
*
9394760 ATTTTTATAATTTTTAATAAATTATTTG
1 ATTTTTATAAATTTTAATAAATTATTTG
9394788 ATTT
1 ATTT
9394792 GAATAGGAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 21 0.72
29 8 0.28
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.61
Consensus pattern (28 bp):
ATTTTTATAAATTTTAATAAATTATTTG
Found at i:9394992 original size:11 final size:10
Alignment explanation
Indices: 9394969--9395060 Score: 50
Period size: 10 Copynumber: 9.2 Consensus size: 10
9394959 AAGTTGTAAA
*
9394969 TTTTTATGAT
1 TTTTTATAAT
*
9394979 TTTTTATAAC
1 TTTTTATAAT
*
9394989 TTTTTAT-CT
1 TTTTTATAAT
*
9394998 TTTATAATAAT
1 TTT-TTATAAT
9395009 TTTTT-TATAT
1 TTTTTATA-AT
9395019 TTTTTCA-ATAT
1 TTTTT-ATA-AT
*
9395030 TTTTTA-CAT
1 TTTTTATAAT
*
9395039 TTTTAAT-AT
1 TTTTTATAAT
9395048 TTTTTATTAAT
1 TTTTTA-TAAT
9395059 TT
1 TT
9395061 ATATTTTTAT
Statistics
Matches: 64, Mismatches: 10, Indels: 15
0.72 0.11 0.17
Matches are distributed among these distances:
9 19 0.30
10 28 0.44
11 17 0.27
ACGTcount: A:0.26, C:0.04, G:0.01, T:0.68
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:9395013 original size:21 final size:21
Alignment explanation
Indices: 9394989--9395052 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
9394979 TTTTTATAAC
*
9394989 TTTTTATCTTTTAT-AATAATT
1 TTTTTATATTTTATCAAT-ATT
*
9395010 TTTTTATATTTTTTCAATA-T
1 TTTTTATATTTTATCAATATT
*
9395030 TTTTTACATTTT-T-AATATT
1 TTTTTATATTTTATCAATATT
9395049 TTTT
1 TTTT
9395053 ATTAATTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
18 4 0.11
19 6 0.16
20 12 0.32
21 13 0.34
22 3 0.08
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTTTATATTTTATCAATATT
Found at i:9395023 original size:9 final size:9
Alignment explanation
Indices: 9394969--9395077 Score: 69
Period size: 9 Copynumber: 11.4 Consensus size: 9
9394959 AAGTTGTAAA
9394969 TTTTTATGAT
1 TTTTTAT-AT
*
9394979 TTTTTATAAC
1 TTTTTAT-AT
*
9394989 TTTTTATCT
1 TTTTTATAT
*
9394998 TTTATAATAATT
1 TTT-TTAT-A-T
9395010 TTTTTATAT
1 TTTTTATAT
9395019 TTTTTCAATAT
1 TTTTT--ATAT
*
9395030 TTTTTACAT
1 TTTTTATAT
*
9395039 TTTTAATAT
1 TTTTTATAT
9395048 TTTTTAT-T
1 TTTTTATAT
**
9395056 AATTTATA-
1 TTTTTATAT
9395064 TTTTTATCAT
1 TTTTTAT-AT
9395074 TTTT
1 TTTT
9395078 CATCACATGC
Statistics
Matches: 76, Mismatches: 15, Indels: 16
0.71 0.14 0.15
Matches are distributed among these distances:
8 11 0.14
9 26 0.34
10 23 0.30
11 12 0.16
12 4 0.05
ACGTcount: A:0.26, C:0.05, G:0.01, T:0.69
Consensus pattern (9 bp):
TTTTTATAT
Found at i:9395596 original size:20 final size:20
Alignment explanation
Indices: 9395567--9395606 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
9395557 GTTCCAATAA
* *
9395567 CAAATTAGTCACTCAACTTT
1 CAAATCAGTCACTAAACTTT
9395587 CAAATCAGTCACTAAACTTT
1 CAAATCAGTCACTAAACTTT
9395607 AGAAAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.25, G:0.05, T:0.33
Consensus pattern (20 bp):
CAAATCAGTCACTAAACTTT
Found at i:9395732 original size:3 final size:3
Alignment explanation
Indices: 9395724--9395763 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
9395714 TGGGTAGTAA
*
9395724 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAA AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
9395764 GGCAGAATTC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:9396009 original size:20 final size:22
Alignment explanation
Indices: 9395973--9396022 Score: 68
Period size: 20 Copynumber: 2.3 Consensus size: 22
9395963 GAAGAATTGT
*
9395973 AAGAAAAGAAGAAAGAAGAA-A
1 AAGAAAAGAAAAAAGAAGAAGA
9395994 AAGAAAA-AAAAAAGAAGAAGA
1 AAGAAAAGAAAAAAGAAGAAGA
9396015 AGAGAAAA
1 A-AGAAAA
9396023 CAAATGTGGC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 11 0.42
21 9 0.35
22 6 0.23
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (22 bp):
AAGAAAAGAAAAAAGAAGAAGA
Found at i:9396130 original size:3 final size:3
Alignment explanation
Indices: 9396122--9396157 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
9396112 GTTTGGCACC
*
9396122 TCT TCT TCT TCT TCT TCT TCT TCT TTT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
9396158 GTCAACTAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TCT
Found at i:9397937 original size:104 final size:104
Alignment explanation
Indices: 9397748--9397940 Score: 296
Period size: 104 Copynumber: 1.9 Consensus size: 104
9397738 TGAGTTCGTC
* * * *
9397748 AGAAGTGTGAACGAATATGGGTAAGTGCCTTCTGTGGTAAATGAGTAACATAACCAATTGTGGTG
1 AGAAGTGTGAACGAATATAGGTAAGTGCATTCTGTGGTAAATGAGTAACACAACCAATTGTGATG
* *
9397813 CCTCTGGTAGAGTAGGTACATTGCCTTCAGATATGTGTA
66 CCTCTGGTAGAGCAGATACATTGCCTTCAGATATGTGTA
* * *
9397852 AGAAGTGTGAATGAATCTAGGTAAGTGCATTCTGTGGTAAATGAGTAACACGACCAATTGTGATG
1 AGAAGTGTGAACGAATATAGGTAAGTGCATTCTGTGGTAAATGAGTAACACAACCAATTGTGATG
*
9397917 CCTCTGGTAGGGCAGATACATTGC
66 CCTCTGGTAGAGCAGATACATTGC
9397941 TAATCAGACT
Statistics
Matches: 79, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
104 79 1.00
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (104 bp):
AGAAGTGTGAACGAATATAGGTAAGTGCATTCTGTGGTAAATGAGTAACACAACCAATTGTGATG
CCTCTGGTAGAGCAGATACATTGCCTTCAGATATGTGTA
Found at i:9398190 original size:22 final size:22
Alignment explanation
Indices: 9398158--9398230 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 22
9398148 TGATGTTTTA
* *
9398158 TGTAAACCTTTATGGCATAATT
1 TGTAAACCTTTGTGGCATATTT
*
9398180 TGTAAAGCTTTTGTGGCATATTT
1 TGTAAA-CCTTTGTGGCATATTT
*
9398203 TGTAATACCTATGTGGCATATTT
1 TGTAA-ACCTTTGTGGCATATTT
9398226 TGTAA
1 TGTAA
9398231 TGCCCGTGTG
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
22 6 0.14
23 37 0.84
24 1 0.02
ACGTcount: A:0.27, C:0.11, G:0.18, T:0.44
Consensus pattern (22 bp):
TGTAAACCTTTGTGGCATATTT
Found at i:9398240 original size:23 final size:23
Alignment explanation
Indices: 9398191--9398264 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 23
9398181 GTAAAGCTTT
* *
9398191 TGTGGCATATTTTGTAATACCTA
1 TGTGGCATATTTTGTAATGCCCA
*
9398214 TGTGGCATATTTTGTAATGCCCG
1 TGTGGCATATTTTGTAATGCCCA
** * * *
9398237 TGTGGTGTATTCTATAATGCCCT
1 TGTGGCATATTTTGTAATGCCCA
9398260 TGTGG
1 TGTGG
9398265 TGAAATCTGG
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.19, C:0.15, G:0.24, T:0.42
Consensus pattern (23 bp):
TGTGGCATATTTTGTAATGCCCA
Found at i:9401028 original size:11 final size:11
Alignment explanation
Indices: 9401012--9401069 Score: 66
Period size: 11 Copynumber: 5.4 Consensus size: 11
9401002 TATTTTTTAT
9401012 TTTTAAAATAC
1 TTTTAAAATAC
9401023 TTTTAAAATAC
1 TTTTAAAATAC
*
9401034 TTTTATTAA-A-
1 TTTTA-AAATAC
**
9401044 TTTTAAAATTT
1 TTTTAAAATAC
9401055 TTTTAAAATAC
1 TTTTAAAATAC
9401066 TTTT
1 TTTT
9401070 TTAATTTTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
9 2 0.05
10 5 0.13
11 30 0.77
12 2 0.05
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:9401059 original size:32 final size:31
Alignment explanation
Indices: 9401004--9401078 Score: 98
Period size: 32 Copynumber: 2.4 Consensus size: 31
9400994 AATATTTTTA
*
9401004 TTTTTT-ATTTTTAAAATACTTTTAAAATAC
1 TTTTTTAAATTTTAAAATACTTTTAAAATAC
**
9401034 TTTTATTAAATTTTAAAATTTTTTTAAAATAC
1 TTTT-TTAAATTTTAAAATACTTTTAAAATAC
*
9401066 TTTTTTAATTTTT
1 TTTTTTAAATTTT
9401079 TTAATTTTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
30 4 0.10
31 10 0.26
32 25 0.64
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (31 bp):
TTTTTTAAATTTTAAAATACTTTTAAAATAC
Done.