Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62769430
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1067035 characters in sequence are not A, C, G, or T
File 36 of 206
Found at i:10505093 original size:19 final size:21
Alignment explanation
Indices: 10505066--10505107 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
10505056 TTAATTTTAA
*
10505066 TTACTTTGATT-AATTTAATT
1 TTACTTTGATTAAAATTAATT
10505086 TTAC-TTGATTAAAATTAATT
1 TTACTTTGATTAAAATTAATT
10505106 TT
1 TT
10505108 CTAAAAAACC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57
Consensus pattern (21 bp):
TTACTTTGATTAAAATTAATT
Found at i:10510609 original size:26 final size:25
Alignment explanation
Indices: 10510550--10510616 Score: 84
Period size: 26 Copynumber: 2.6 Consensus size: 25
10510540 TATTTAGGTC
10510550 TTAAAAATTATT-ATTTTAGATTTT
1 TTAAAAATTATTAATTTTAGATTTT
10510574 TTAAAAAAATTATATAATCTTTAGATTTT
1 TT--AAAAATTAT-TAAT-TTTAGATTTT
10510603 TT-AAAATTATTAAT
1 TTAAAAATTATTAAT
10510617 AATATATATT
Statistics
Matches: 38, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
24 2 0.05
25 4 0.11
26 17 0.45
27 1 0.03
28 2 0.05
29 12 0.32
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.52
Consensus pattern (25 bp):
TTAAAAATTATTAATTTTAGATTTT
Found at i:10510614 original size:29 final size:28
Alignment explanation
Indices: 10510552--10510619 Score: 86
Period size: 29 Copynumber: 2.5 Consensus size: 28
10510542 TTTAGGTCTT
*
10510552 AAAAATT-ATTAT-TTTAGATTTTTTAA
1 AAAAATTAATAATCTTTAGATTTTTTAA
10510578 AAAAATTATATAATCTTTAGATTTTTTAA
1 AAAAATTA-ATAATCTTTAGATTTTTTAA
**
10510607 AATTATTAATAAT
1 AAAAATTAATAAT
10510620 ATATATTTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 7 0.19
28 9 0.25
29 20 0.56
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (28 bp):
AAAAATTAATAATCTTTAGATTTTTTAA
Found at i:10510619 original size:28 final size:29
Alignment explanation
Indices: 10510552--10510608 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
10510542 TTTAGGTCTT
10510552 AAAAATTAT-T-AT-TTTAGATTTTTTAA
1 AAAAATTATATAATCTTTAGATTTTTTAA
10510578 AAAAATTATATAATCTTTAGATTTTTTAA
1 AAAAATTATATAATCTTTAGATTTTTTAA
10510607 AA
1 AA
10510609 TTATTAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 9 0.32
27 1 0.04
28 2 0.07
29 16 0.57
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.49
Consensus pattern (29 bp):
AAAAATTATATAATCTTTAGATTTTTTAA
Found at i:10510655 original size:19 final size:19
Alignment explanation
Indices: 10510622--10510672 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 19
10510612 TTAATAATAT
*
10510622 ATATTTTGAAATTTTTATAA
1 ATATTTTG-AATTTTTAAAA
10510642 ATATTTTGAA-TTTTAAAA
1 ATATTTTGAATTTTTAAAA
10510660 ATTATTTTGAATT
1 A-TATTTTGAATT
10510673 ATTTTGTACT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 8 0.29
19 11 0.39
20 9 0.32
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (19 bp):
ATATTTTGAATTTTTAAAA
Found at i:10527112 original size:48 final size:47
Alignment explanation
Indices: 10527059--10527202 Score: 207
Period size: 48 Copynumber: 3.0 Consensus size: 47
10527049 CAACAACTAT
* * *
10527059 ACATAACATATAACATATACAGAGTCATATTAACTCACTTTTTTCAAA
1 ACATAACATATAACACATACAGAGTTATTTTAACT-ACTTTTTTCAAA
* * *
10527107 ACATAACATATAACACATACAAAGTTATTTTAACTTACTCTTTTCAAT
1 ACATAACATATAACACATACAGAGTTATTTTAAC-TACTTTTTTCAAA
10527155 ACATAACATATAACACATACAGAGTTATTTTAACATACTTTTTTCAAA
1 ACATAACATATAACACATACAGAGTTATTTTAAC-TACTTTTTTCAAA
10527203 TCCTTCATTG
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
48 84 0.99
49 1 0.01
ACGTcount: A:0.43, C:0.18, G:0.03, T:0.35
Consensus pattern (47 bp):
ACATAACATATAACACATACAGAGTTATTTTAACTACTTTTTTCAAA
Found at i:10528695 original size:14 final size:13
Alignment explanation
Indices: 10528676--10528713 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
10528666 CCAGAAAAGT
10528676 AAATCATTTTCCAG
1 AAATCATTTTCC-G
10528690 AAATCATTTTCCG
1 AAATCATTTTCCG
10528703 AAAGTCATTTT
1 AAA-TCATTTT
10528714 TAGTGAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 4 0.17
14 19 0.83
ACGTcount: A:0.34, C:0.18, G:0.08, T:0.39
Consensus pattern (13 bp):
AAATCATTTTCCG
Found at i:10528831 original size:24 final size:24
Alignment explanation
Indices: 10528799--10528849 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
10528789 AACAACCATA
10528799 CTTAGTTAATTCCTTTTGTTGTTT
1 CTTAGTTAATTCCTTTTGTTGTTT
10528823 CTTAGTTAATTCCTTTTGTTGTTT
1 CTTAGTTAATTCCTTTTGTTGTTT
10528847 CTT
1 CTT
10528850 TTGTAGTGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.12, C:0.14, G:0.12, T:0.63
Consensus pattern (24 bp):
CTTAGTTAATTCCTTTTGTTGTTT
Found at i:10532321 original size:14 final size:14
Alignment explanation
Indices: 10532288--10532321 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
10532278 ATGGTGGGAA
*
10532288 AAATAATATAATAT
1 AAATAATATAAAAT
*
10532302 AGATAATATAAAAT
1 AAATAATATAAAAT
10532316 AAATAA
1 AAATAA
10532322 AAAAAGTACC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (14 bp):
AAATAATATAAAAT
Found at i:10533336 original size:6 final size:6
Alignment explanation
Indices: 10533325--10533368 Score: 88
Period size: 6 Copynumber: 7.3 Consensus size: 6
10533315 TTTTACTGTC
10533325 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT AT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT AT
10533369 GATTTAAAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34
Consensus pattern (6 bp):
ATACAT
Found at i:10534491 original size:2 final size:2
Alignment explanation
Indices: 10534484--10534511 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
10534474 AGAACAGGCT
10534484 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10534512 AGAGGCTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10538484 original size:20 final size:20
Alignment explanation
Indices: 10538467--10538504 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
10538457 CAAATTGATT
*
10538467 AGTGACATGGCATGTTGACC
1 AGTGACATAGCATGTTGACC
*
10538487 AGTGACATAGTATGTTGA
1 AGTGACATAGCATGTTGA
10538505 GTAAGTTGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.29
Consensus pattern (20 bp):
AGTGACATAGCATGTTGACC
Found at i:10541088 original size:67 final size:67
Alignment explanation
Indices: 10541015--10541141 Score: 220
Period size: 67 Copynumber: 1.9 Consensus size: 67
10541005 TTTAACAAAA
*
10541015 TTTTTTCTCTCATTTTCTCTCTTGCCAAACACCACTTTTT-TTCTTCAAAACACATGGTTGCTGC
1 TTTTTTCTCTCATTATCTCTCTTGCCAAACACCA-TTTTTCTTCTTCAAAACACATGGTTGCTGC
10541079 CAT
65 CAT
*
10541082 TTTTTTCTCTCATTATCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACATATGGTTG
1 TTTTTTCTCTCATTATCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACATGGTTG
10541142 GCTCATTTCA
Statistics
Matches: 57, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
66 5 0.09
67 52 0.91
ACGTcount: A:0.20, C:0.27, G:0.07, T:0.46
Consensus pattern (67 bp):
TTTTTTCTCTCATTATCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACATGGTTGCTGCC
AT
Found at i:10543021 original size:6 final size:6
Alignment explanation
Indices: 10543010--10543060 Score: 102
Period size: 6 Copynumber: 8.5 Consensus size: 6
10543000 TTTTGGTATG
10543010 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
10543058 GTA
1 GTA
10543061 ATAGTTGGTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (6 bp):
GTATAT
Found at i:10546518 original size:18 final size:18
Alignment explanation
Indices: 10546476--10546518 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
10546466 TTTATTAAAA
*
10546476 AAAACATTTTTTACATTT
1 AAAATATTTTTTACATTT
*
10546494 AATATATTTTTTA-ATTT
1 AAAATATTTTTTACATTT
10546511 CAAAATAT
1 -AAAATAT
10546519 ATGGTGATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (18 bp):
AAAATATTTTTTACATTT
Found at i:10549573 original size:228 final size:228
Alignment explanation
Indices: 10549165--10550495 Score: 1395
Period size: 228 Copynumber: 5.8 Consensus size: 228
10549155 ATTCAAATAG
* * * *
10549165 ATGCAAAT-TTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTT-GAGGTGGAAAGCTCCGAC
1 ATGCAAATCTTT-GTGAAGACCCTCACCGGAAAGACCATCA-CCTTGGAGGTTGAAAGCTCAGAC
* * * * * *
10549228 ACCATCGATAATGTCAAGGCCAAGATCCAAGATAAAGAAGGAATCCCACCAGATCAACAGAGGCT
64 ACCATTGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGGATCCCGCCAGACCAACAGAGG-T
* * * * * * * * *
10549293 T-ATCTTTGCTGGTAAGCAGCTAGAGGATGGTCGTACACTTGCTGACTACAACATTCAGAAGGAG
128 TGATCTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCCTGGCTGACTACAACATCCAAAAGGAG
* * * *
10549357 TCCACCCTCCACTTGGTCCTTCGT-TTGAGGGGTGGT
193 TCCACCCTCCATTTGGTGCTTCGTCTT-CGTGGTGGT
* * * * * * *
10549393 ATGCAAATCTTTGTTAAGACCCTCACCGGCAAGACTATCACCCTCGAGGTGGAAAGCTCGGACAC
1 ATGCAAATCTTTGTGAAGACCCTCACCGGAAAGACCATCACCTTGGAGGTTGAAAGCTCAGACAC
* * * *
10549458 CATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGGATCCCTCCAGACCAGCAGAGACTT-
66 CATTGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGGATCCCGCCAGACCAACAGAG-GTTG
* *
10549522 ATCTTTGCCGGTAAGCAACTAGAAGATGGCCGTACCCTGGCTGATTACAACATCCAAAAGGAGTC
130 ATCTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCCTGGCTGACTACAACATCCAAAAGGAGTC
* * * *
10549587 CACCCTCCATTTGGTGCTCCGCCTTCGTGGAGGA
195 CACCCTCCATTTGGTGCTTCGTCTTCGTGGTGGT
* * * * * * * * *
10549621 ATGCAAATCTTTGTTAAGACCTTGACCGGAAAGACAATTACTTTGGAGGTTGAGAGTTCAGATAC
1 ATGCAAATCTTTGTGAAGACCCTCACCGGAAAGACCATCACCTTGGAGGTTGAAAGCTCAGACAC
* * * * *
10549686 CATTGACAATGTCAAGGCTAAGATCCAGGAC-AAGGAGGGTATTCCGCCAGACCAGCAGAGGTTG
66 CATTGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGG-ATCCCGCCAGACCAACAGAGGTTG
* * *
10549750 ATCTTTGCTGGTAAGCAATTAGAAGATGGCCGCACCCTGGCTGACTACAACATCCAAAAGGAATC
130 ATCTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCCTGGCTGACTACAACATCCAAAAGGAGTC
10549815 CACCCTCCATTTGGTGCTTCGTCTTCGTGGTGGT
195 CACCCTCCATTTGGTGCTTCGTCTTCGTGGTGGT
* * * * * * * *
10549849 ATGCAAATATTTGTGAAGACTCTTACCGGAAAGACCATTACTTTGGAGGTTGAGAGTTCAGATAC
1 ATGCAAATCTTTGTGAAGACCCTCACCGGAAAGACCATCACCTTGGAGGTTGAAAGCTCAGACAC
* * *
10549914 CATTGACAATGTCAAGGCTAAGATCCAGGAC-AAGGAGGGTATTCCC-CCAGACCAACAGAGGTT
66 CATTGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGG-A-TCCCGCCAGACCAACAGAGGTT
* * * * *
10549977 GATCTTTGCCGGTAAGCAACTTGAAGATGGCCGCACTCTCGCTGATTACAACATCCAAAAGGAAT
129 GATCTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCCTGGCTGACTACAACATCCAAAAGGAGT
10550042 CCACCCTCCATTTGGTGCTTCGTCTTCGTGGTGGT
194 CCACCCTCCATTTGGTGCTTCGTCTTCGTGGTGGT
* * * * * * *
10550077 ATGCAGATTTTTGTGAAGACTCTTACCGGGAAA-ACCATCACCTTGGAAGTTGAGAGCTCCGACA
1 ATGCAAATCTTTGTGAAGACCCTCACC-GGAAAGACCATCACCTTGGAGGTTGAAAGCTCAGACA
* * * * * *
10550141 CTATTGACAATGTCAAGGCCAAAATCCAGGACAAGGAAGGTATCCCTCCAGACCAACAGAGGTTG
65 CCATTGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGGATCCCGCCAGACCAACAGAGGTTG
* * * * * * * * * *
10550206 AT-TTTCGCGGGTAAGCAGCTTGAGGATGGCAGGACACTTGCAGACTACAACATTCAAAAGGAGT
130 ATCTTT-GCCGGTAAGCAACTAGAAGATGGCCGCACCCTGGCTGACTACAACATCCAAAAGGAGT
* * *
10550270 CGACCCTCCATTTGGTTCTTCGTCTTCGTGGTGGG
194 CCACCCTCCATTTGGTGCTTCGTCTTCGTGGTGGT
* ** * * * * *
10550305 ATGCAAATTTTTGTGAAGACATTGACAGGAAAGACCATCACTTTGGAAGTTGAAAGCTCGGACAC
1 ATGCAAATCTTTGTGAAGACCCTCACCGGAAAGACCATCACCTTGGAGGTTGAAAGCTCAGACAC
* * * * * * *
10550370 TATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAAGGAATCCCGCCAGACCAGCAGAGGTTGA
66 CATTGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGGATCCCGCCAGACCAACAGAGGTTGA
* * * ** * * * *
10550435 TCTTTGCAGGGAAGCAACTTGAAGATGGAAGGACCTTGGCAGACTACAACATCCAGAAGGA
131 TCTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCCTGGCTGACTACAACATCCAAAAGGA
10550496 ATCGACTCTG
Statistics
Matches: 965, Mismatches: 125, Indels: 26
0.86 0.11 0.02
Matches are distributed among these distances:
227 24 0.02
228 920 0.95
229 21 0.02
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (228 bp):
ATGCAAATCTTTGTGAAGACCCTCACCGGAAAGACCATCACCTTGGAGGTTGAAAGCTCAGACAC
CATTGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGGATCCCGCCAGACCAACAGAGGTTGA
TCTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCCTGGCTGACTACAACATCCAAAAGGAGTCC
ACCCTCCATTTGGTGCTTCGTCTTCGTGGTGGT
Found at i:10550497 original size:684 final size:684
Alignment explanation
Indices: 10549228--10550498 Score: 1618
Period size: 684 Copynumber: 1.9 Consensus size: 684
10549218 AAGCTCCGAC
* * *
10549228 ACCATCGATAATGTCAAGGCCAAGATCCAAGATAAAGAAGGAATCCCACCAGATCAACAGAGGCT
1 ACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCACCAGACCAACAGAGGCT
* * * * * * * * *
10549293 TATCTTTGCTGGTAAGCAGCTAGAGGATGGTCGTACACTTGCTGACTACAACATTCAGAAGGAGT
66 TATCTTTGCCGGTAAGCAACTAGAAGATGGCCGCACACTCGCTGACTACAACATCCAAAAGGAAT
*
10549358 CCACCCTCCACTTGGTCCTTCGTTTGAGGGGTGGTATGCAAATCTTTGTTAAGACCCTCACCGGC
131 CCACCCTCCACTTGGTCCTTCGTTTGAGGGGTGGTATGCAAATCTTTGTGAAGACCCTCACCGGC
* * * * * *
10549423 AAGACTATCACCCTCGAGGTGGAAAGCTCGGACACCATTGATAATGTCAAGGCCAAGATCCAAGA
196 AAAACCATCACCCTCGAAGTGGAAAGCTCCGACACCATTGACAATGTCAAGGCCAAAATCCAAGA
* *
10549488 CAAAGAAGGGATCCCTCCAGACCAGCAGAGACTTATCTTTGCCGGTAAGCAACTAGAAGATGGCC
261 CAAAGAAGGGATCCCTCCAGACCAACAGAGACTTATCTTTGCCGGTAAGCAACTAGAAGATGGCA
* * * *
10549553 GTACCCTGGCTGATTACAACATCCAAAAGGAGTCCACCCTCCATTTGGTGCTCCGCCTTCGTGGA
326 GGACACTGGCAGACTACAACATCCAAAAGGAGTCCACCCTCCATTTGGTGCTCCGCCTTCGTGGA
* * * * * * *
10549618 GGAATGCAAATCTTTGTTAAGACCTTGACCGGAAAGACAATTACTTTGGAGGTTGAGAGTTCAGA
391 GGAATGCAAATCTTTGTGAAGACATTGACAGGAAAGACAATCACTTTGGAAGTTGAAAGCTCAGA
* * * * * *
10549683 TACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCGCCAGACCAGCAGAGGT
456 CACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCGCCAGACCAGCAGAGGT
* * ** *
10549748 TGATCTTTGCTGGTAAGCAATTAGAAGATGGCCGCACCCTGGCTGACTACAACATCCAAAAGGAA
521 TGATCTTTGCAGGGAAGCAATTAGAAGATGGAAGCACCCTGGCAGACTACAACATCCAAAAGGAA
10549813 TCCACCCTCCATTTGGTGCTTCGTCTTCGTGGTGGTATGCAAATATTTGTGAAGACTCTTACCGG
586 TCCACCCTCCATTTGGTGCTTCGTCTTCGTGGTGGTATGCAAATATTTGTGAAGACTCTTACCGG
10549878 AAAGACCATTACTTTGGAGGTTGAGAGTTCAGAT
651 AAAGACCATTACTTTGGAGGTTGAGAGTTCAGAT
* * * * * *
10549912 ACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCC-CCAGACCAACAGAGG-
1 ACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGG-AATCCCACCAGACCAACAGAGGC
* * *
10549975 TTGATCTTTGCCGGTAAGCAACTTGAAGATGGCCGCACTCTCGCTGATTACAACATCCAAAAGGA
65 TT-ATCTTTGCCGGTAAGCAACTAGAAGATGGCCGCACACTCGCTGACTACAACATCCAAAAGGA
* * * * * * * *
10550040 ATCCACCCTCCATTTGGTGCTTCGTCTT-CGTGGTGGTATGCAGATTTTTGTGAAGACTCTTACC
129 ATCCACCCTCCACTTGGTCCTTCGT-TTGAGGGGTGGTATGCAAATCTTTGTGAAGACCCTCACC
* * * * * *
10550104 GGGAAAACCATCACCTTGGAAGTTGAGAGCTCCGACACTATTGACAATGTCAAGGCCAAAATCCA
193 GGCAAAACCATCACCCTCGAAGTGGAAAGCTCCGACACCATTGACAATGTCAAGGCCAAAATCCA
* * * * * * * *
10550169 GGACAAGGAAGGTATCCCTCCAGACCAACAGAG-GTTGAT-TTTCGCGGGTAAGCAGCTTGAGGA
258 AGACAAAGAAGGGATCCCTCCAGACCAACAGAGACTT-ATCTTT-GCCGGTAAGCAACTAGAAGA
* * * * * *
10550232 TGGCAGGACACTTGCAGACTACAACATTCAAAAGGAGTCGACCCTCCATTTGGTTCTTCGTCTTC
321 TGGCAGGACACTGGCAGACTACAACATCCAAAAGGAGTCCACCCTCCATTTGGTGCTCCGCCTTC
* * * *
10550297 GTGGTGGGATGCAAATTTTTGTGAAGACATTGACAGGAAAGACCATCACTTTGGAAGTTGAAAGC
386 GTGGAGGAATGCAAATCTTTGTGAAGACATTGACAGGAAAGACAATCACTTTGGAAGTTGAAAGC
* * * * *
10550362 TCGGACACTATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAAGGAATCCCGCCAGACCAGCA
451 TCAGACACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCGCCAGACCAGCA
* * *
10550427 GAGGTTGATCTTTGCAGGGAAGCAACTT-GAAGATGGAAGGACCTTGGCAGACTACAACATCCAG
516 GAGGTTGATCTTTGCAGGGAAGCAA-TTAGAAGATGGAAGCACCCTGGCAGACTACAACATCCAA
10550491 AAGGAATC
580 AAGGAATC
10550499 GACTCTGCAC
Statistics
Matches: 489, Mismatches: 92, Indels: 12
0.82 0.16 0.02
Matches are distributed among these distances:
683 7 0.01
684 473 0.97
685 9 0.02
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (684 bp):
ACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATCCCACCAGACCAACAGAGGCT
TATCTTTGCCGGTAAGCAACTAGAAGATGGCCGCACACTCGCTGACTACAACATCCAAAAGGAAT
CCACCCTCCACTTGGTCCTTCGTTTGAGGGGTGGTATGCAAATCTTTGTGAAGACCCTCACCGGC
AAAACCATCACCCTCGAAGTGGAAAGCTCCGACACCATTGACAATGTCAAGGCCAAAATCCAAGA
CAAAGAAGGGATCCCTCCAGACCAACAGAGACTTATCTTTGCCGGTAAGCAACTAGAAGATGGCA
GGACACTGGCAGACTACAACATCCAAAAGGAGTCCACCCTCCATTTGGTGCTCCGCCTTCGTGGA
GGAATGCAAATCTTTGTGAAGACATTGACAGGAAAGACAATCACTTTGGAAGTTGAAAGCTCAGA
CACCATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCGCCAGACCAGCAGAGGT
TGATCTTTGCAGGGAAGCAATTAGAAGATGGAAGCACCCTGGCAGACTACAACATCCAAAAGGAA
TCCACCCTCCATTTGGTGCTTCGTCTTCGTGGTGGTATGCAAATATTTGTGAAGACTCTTACCGG
AAAGACCATTACTTTGGAGGTTGAGAGTTCAGAT
Found at i:10556328 original size:26 final size:26
Alignment explanation
Indices: 10556299--10556390 Score: 103
Period size: 26 Copynumber: 3.5 Consensus size: 26
10556289 TAAAAATAAG
* *
10556299 CCGACCAACTCAAATTCAAGGGCCCT
1 CCGACCAACTCAAACTCAAGGGACCT
* *
10556325 CCGACGAACTCAAACTCAAGGGTCCT
1 CCGACCAACTCAAACTCAAGGGACCT
** * *
10556351 TGGACCCACTCAAACTCAAGAGACCT
1 CCGACCAACTCAAACTCAAGGGACCT
*
10556377 CTGACCAACTCAAA
1 CCGACCAACTCAAA
10556391 TAGAAGGATA
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.34, C:0.36, G:0.15, T:0.15
Consensus pattern (26 bp):
CCGACCAACTCAAACTCAAGGGACCT
Found at i:10558587 original size:22 final size:22
Alignment explanation
Indices: 10558554--10558606 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
10558544 ATTTCCTCTC
10558554 AATTCCTCTCAATTTCCTTCCAA
1 AATT-CTCTCAATTTCCTTCCAA
*
10558577 AATTCTCTCAATTTTCTTCCAA
1 AATTCTCTCAATTTCCTTCCAA
10558599 AATTCTCT
1 AATTCTCT
10558607 TAAATCCATA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 25 0.86
23 4 0.14
ACGTcount: A:0.26, C:0.30, G:0.00, T:0.43
Consensus pattern (22 bp):
AATTCTCTCAATTTCCTTCCAA
Found at i:10558641 original size:22 final size:22
Alignment explanation
Indices: 10558616--10558692 Score: 55
Period size: 22 Copynumber: 3.2 Consensus size: 22
10558606 TTAAATCCAT
10558616 ATTTAATTTCAATTTCCTCTCA
1 ATTTAATTTCAATTTCCTCTCA
** * *
10558638 ATTTCCTTCCAAAATTCTCTCAAATTCA
1 ATTTAATTTC-AATTTC-CTC----TCA
10558666 TATTTAATTTCAATTTCCTCTCA
1 -ATTTAATTTCAATTTCCTCTCA
10558689 ATTT
1 ATTT
10558693 CCTTTTTTAA
Statistics
Matches: 40, Mismatches: 8, Indels: 14
0.65 0.13 0.23
Matches are distributed among these distances:
22 11 0.28
23 8 0.20
24 3 0.08
27 3 0.08
28 8 0.20
29 7 0.17
ACGTcount: A:0.29, C:0.23, G:0.00, T:0.48
Consensus pattern (22 bp):
ATTTAATTTCAATTTCCTCTCA
Found at i:10558647 original size:51 final size:51
Alignment explanation
Indices: 10558581--10558696 Score: 205
Period size: 51 Copynumber: 2.3 Consensus size: 51
10558571 TTCCAAAATT
* *
10558581 CTCTCAATTTTCTTCCAAAATTCTCTTAAATCCATATTTAATTTCAATTTC
1 CTCTCAATTTCCTTCCAAAATTCTCTCAAATCCATATTTAATTTCAATTTC
*
10558632 CTCTCAATTTCCTTCCAAAATTCTCTCAAATTCATATTTAATTTCAATTTC
1 CTCTCAATTTCCTTCCAAAATTCTCTCAAATCCATATTTAATTTCAATTTC
10558683 CTCTCAATTTCCTT
1 CTCTCAATTTCCTT
10558697 TTTTAAAATA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.28, C:0.26, G:0.00, T:0.47
Consensus pattern (51 bp):
CTCTCAATTTCCTTCCAAAATTCTCTCAAATCCATATTTAATTTCAATTTC
Found at i:10559737 original size:7 final size:7
Alignment explanation
Indices: 10559725--10559749 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
10559715 AGTCGATTGA
10559725 TATTTAG
1 TATTTAG
10559732 TATTTAG
1 TATTTAG
10559739 TATTTAG
1 TATTTAG
10559746 TATT
1 TATT
10559750 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:10560942 original size:25 final size:25
Alignment explanation
Indices: 10560908--10561045 Score: 164
Period size: 25 Copynumber: 5.7 Consensus size: 25
10560898 TATTTTGATA
10560908 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
10560933 TTATTTGATGTAATAAAATAAAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
10560958 TTATTTGATGTAATAAAATAGAAAT
1 TTATTTGATGTAATAAAATAGAAGT
** *
10560983 TT-TTTCGA-GT--T-ATTTTG-A-T
1 TTATTT-GATGTAATAAAATAGAAGT
10561002 ATTATTTGATGTAATAAAATAGAAGT
1 -TTATTTGATGTAATAAAATAGAAGT
10561028 TTATTTGATGTAATAAAA
1 TTATTTGATGTAATAAAA
10561046 CCCTGACCTA
Statistics
Matches: 95, Mismatches: 9, Indels: 18
0.78 0.07 0.15
Matches are distributed among these distances:
19 1 0.01
20 5 0.05
21 8 0.08
22 1 0.01
23 1 0.01
24 8 0.08
25 70 0.74
26 1 0.01
ACGTcount: A:0.42, C:0.01, G:0.14, T:0.43
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:10561000 original size:95 final size:93
Alignment explanation
Indices: 10560865--10561045 Score: 335
Period size: 95 Copynumber: 1.9 Consensus size: 93
10560855 TATTTTGATA
*
10560865 TTATTTTATGTAAAAAATAGAAATTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAATAGA
1 TTATTTGATGTAAAAAATAGAAATTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAATAGA
10560930 AGTTTATTTGATGTAATAAAATAAAAGT
66 AGTTTATTTGATGTAATAAAATAAAAGT
10560958 TTATTTGATGTAATAAAATAGAAATTTTTTCGAGTTATTTTGATATTATTTGATGTAATAAAATA
1 TTATTTGATGTAA-AAAATAGAAATTTTTT-GAGTTATTTTGATATTATTTGATGTAATAAAATA
10561023 GAAGTTTATTTGATGTAATAAAA
64 GAAGTTTATTTGATGTAATAAAA
10561046 CCCTGACCTA
Statistics
Matches: 85, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
93 12 0.14
94 16 0.19
95 57 0.67
ACGTcount: A:0.41, C:0.01, G:0.13, T:0.45
Consensus pattern (93 bp):
TTATTTGATGTAAAAAATAGAAATTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAATAGA
AGTTTATTTGATGTAATAAAATAAAAGT
Found at i:10561022 original size:45 final size:44
Alignment explanation
Indices: 10560855--10561035 Score: 211
Period size: 45 Copynumber: 4.0 Consensus size: 44
10560845 ATATTTTGAA
*
10560855 TATTTTGATATTATTTTATGTAA-AAAATAGAAATTTTTTGAGT
1 TATTTTGATATTATTTGATGTAATAAAATAGAAATTTTTTGAGT
*
10560898 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGATGT
1 TATTTTGATATTATTTGATGTAATAAAATAGAAATTT-TTTGA-GT
*** * *
10560944 AATAAAATAAAAGTTTATTTGATGTAATAAAATAGAAATTTTTTCGAGT
1 --TATTTTGATA--TTATTTGATGTAATAAAATAGAAATTTTTT-GAGT
*
10560993 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGA
1 TATTTTGATATTATTTGATGTAATAAAATAGAAATTT-TTTGA
10561036 TGTAATAAAA
Statistics
Matches: 115, Mismatches: 14, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
43 22 0.19
44 12 0.10
45 33 0.29
46 5 0.04
47 5 0.04
48 5 0.04
49 5 0.04
50 28 0.24
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.47
Consensus pattern (44 bp):
TATTTTGATATTATTTGATGTAATAAAATAGAAATTTTTTGAGT
Found at i:10561113 original size:29 final size:29
Alignment explanation
Indices: 10561060--10561184 Score: 171
Period size: 29 Copynumber: 4.3 Consensus size: 29
10561050 GACCTAATCT
10561060 AACCCTAAACTCC-AACCTAAATTAATTAAA
1 AACCCT-AAC-CCTAACCTAAATTAATTAAA
*
10561090 AACCCTAACCCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAAATTAATTAAA
* * *
10561119 AAACCTAACTCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAAATTAATTAAA
* *
10561148 AAACCTAACCCTAACCTAAATTAATTAAG
1 AACCCTAACCCTAACCTAAATTAATTAAA
10561177 AACCCTAA
1 AACCCTAA
10561185 TGTAATGGCC
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
28 2 0.02
29 79 0.91
30 6 0.07
ACGTcount: A:0.48, C:0.26, G:0.01, T:0.26
Consensus pattern (29 bp):
AACCCTAACCCTAACCTAAATTAATTAAA
Found at i:10563759 original size:21 final size:22
Alignment explanation
Indices: 10563733--10563777 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
10563723 TATGTACACG
* *
10563733 AAAATAAT-AATTACAATATTA
1 AAAATAATAAATAACAATAATA
10563754 AAAATAATAAATAACAATAATA
1 AAAATAATAAATAACAATAATA
10563776 AA
1 AA
10563778 CAAGTATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (22 bp):
AAAATAATAAATAACAATAATA
Found at i:10565980 original size:29 final size:29
Alignment explanation
Indices: 10565947--10566008 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
10565937 GGGTATTACA
10565947 CCTAACCCTAACCTAATTTAATTAAAAAC
1 CCTAACCCTAACCTAATTTAATTAAAAAC
10565976 CCTAACCCTAACCTAATTTAATTAAAAAC
1 CCTAACCCTAACCTAATTTAATTAAAAAC
10566005 CCTA
1 CCTA
10566009 TTTAATTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.44, C:0.29, G:0.00, T:0.27
Consensus pattern (29 bp):
CCTAACCCTAACCTAATTTAATTAAAAAC
Found at i:10566020 original size:18 final size:17
Alignment explanation
Indices: 10565991--10566025 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
10565981 CCCTAACCTA
10565991 ATTTAATTAAAAACCCT
1 ATTTAATTAAAAACCCT
10566008 ATTTAATTAAAAACCCT
1 ATTTAATTAAAAACCCT
10566025 A
1 A
10566026 ACCCTAATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (17 bp):
ATTTAATTAAAAACCCT
Found at i:10566029 original size:46 final size:46
Alignment explanation
Indices: 10565962--10566054 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
10565952 CCCTAACCTA
10565962 ATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCT
1 ATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCT
*
10566008 ATTTAATTAAAAACCCTAACCCTAATCTAATTTAATTAAAAACCCT
1 ATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCT
10566054 A
1 A
10566055 ACCCTAACCT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (46 bp):
ATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCT
Found at i:10566050 original size:29 final size:28
Alignment explanation
Indices: 10566008--10566136 Score: 178
Period size: 29 Copynumber: 4.7 Consensus size: 28
10565998 TAAAAACCCT
10566008 ATTTAATTAAAAACCCTAACCCTAATCTA
1 ATTTAATTAAAAACCCTAACCCTAA-CTA
10566037 ATTTAATTAAAAACCCTAACCCTAACCTA
1 ATTTAATTAAAAACCCTAACCCTAA-CTA
* *
10566066 ATTTAATTAAAAACTCTAACCCTAAAATA
1 ATTTAATTAAAAACCCTAACCCT-AACTA
10566095 ATTTAATTAAAAACCCTAA-CCT-A--A
1 ATTTAATTAAAAACCCTAACCCTAACTA
10566119 A-TTAATTAAAAACCCTAA
1 ATTTAATTAAAAACCCTAA
10566137 ACTAAGTTAA
Statistics
Matches: 95, Mismatches: 4, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
23 17 0.18
24 2 0.02
26 1 0.01
28 3 0.03
29 70 0.74
30 2 0.02
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.29
Consensus pattern (28 bp):
ATTTAATTAAAAACCCTAACCCTAACTA
Found at i:10566133 original size:104 final size:101
Alignment explanation
Indices: 10565947--10566146 Score: 267
Period size: 104 Copynumber: 1.9 Consensus size: 101
10565937 GGGTATTACA
** * *
10565947 CCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTATTT
1 CCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAAATAATTTAATTAAAAACCCTACTA
* *
10566012 AATTAAAAACCCTAACCCTAATCTAATTTAATTAAAAAC
66 AATTAAAAA--C-AACCCTAAACTAAGTTAATTAAAAAC
*
10566051 CCTAACCCTAACCTAATTTAATTAAAAACTCTAACCCTAAAATAATTTAATTAAAAACCCTAACC
1 CCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAAATAATTTAATTAAAAACCCT-A-C
10566116 TAAATTAATTAAA-AACCCTAAACTAAGTTAA
64 TAAATTAA--AAACAACCCTAAACTAAGTTAA
10566147 CAATGTTACA
Statistics
Matches: 85, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
104 74 0.87
105 1 0.01
106 7 0.08
108 3 0.04
ACGTcount: A:0.47, C:0.23, G:0.01, T:0.29
Consensus pattern (101 bp):
CCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAAATAATTTAATTAAAAACCCTACTA
AATTAAAAACAACCCTAAACTAAGTTAATTAAAAAC
Found at i:10566286 original size:116 final size:116
Alignment explanation
Indices: 10566143--10566496 Score: 627
Period size: 116 Copynumber: 3.1 Consensus size: 116
10566133 CTAAACTAAG
* * *
10566143 TTAACAATGTTACATTCACGTAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAA
1 TTAATAATTTTACATTCACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAA
10566208 TAATTTTACATAATTTGATAATTTTACTAACCATTAATACAATTTTTTGAC
66 TAATTTTACATAATTTGATAATTTTACTAACCATTAATACAATTTTTTGAC
* * *
10566259 TTAATAATTTTACATTCACATAATGTTAGATTTGGAAAATTGTTTTGACCGGTATTAACAATTAA
1 TTAATAATTTTACATTCACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAA
*
10566324 TAATTTTACATAATTTGATAATTTTACTACCCATTAATACAATTTTTTGAC
66 TAATTTTACATAATTTGATAATTTTACTAACCATTAATACAATTTTTTGAC
10566375 TTAATAATTTTACATTCACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAA
1 TTAATAATTTTACATTCACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAA
* *
10566440 TAAATTTATATAATTTGATAATTTTACTAACCATTAATACAATTTTTTGAC
66 TAATTTTACATAATTTGATAATTTTACTAACCATTAATACAATTTTTTGAC
10566491 TTAATA
1 TTAATA
10566497 CAATTTATTA
Statistics
Matches: 225, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
116 225 1.00
ACGTcount: A:0.38, C:0.10, G:0.09, T:0.43
Consensus pattern (116 bp):
TTAATAATTTTACATTCACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAA
TAATTTTACATAATTTGATAATTTTACTAACCATTAATACAATTTTTTGAC
Found at i:10569731 original size:123 final size:125
Alignment explanation
Indices: 10569512--10569847 Score: 550
Period size: 126 Copynumber: 2.7 Consensus size: 125
10569502 CCCAAACATG
* * * *
10569512 CTACTGTGGCAAAAGCGCATCCACGAGGCCGCGATTTCACAATTTCTTTTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGCCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* *
10569577 TATAAGCAATTTTATACTATTTGCTCAGAAACGTC-AAAAA-AATTATTTCTTACATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAATAATTATTTCTTACATGAC
* * *
10569635 CTACTGTAGCAAAAGCGCGTACACGAGGCCACGATTTCATAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGCCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* *
10569700 TAGAAGCGATGTTATACTATTTGCTCAGAAACGTCAAAAAAATAATTATTTCTTCCATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTC-AAAAAATAATTATTTCTTACATGAC
10569761 CTACTGTAGCAAAAGCGCGTCCACGAGGCCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGCCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
10569826 TAGAAGCGATTTTATACTATTT
66 TAGAAGCGATTTTATACTATTT
10569848 TATCAGGAAC
Statistics
Matches: 195, Mismatches: 15, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
123 90 0.46
125 5 0.03
126 100 0.51
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.29
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGCCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAATAATTATTTCTTACATGAC
Found at i:10571603 original size:228 final size:228
Alignment explanation
Indices: 10571206--10572092 Score: 1170
Period size: 228 Copynumber: 3.9 Consensus size: 228
10571196 GACACAACAG
* * * * *
10571206 ATGCAGATCTTTGTGAAAACTCTTACTGGTAAGACCATCACCCTCGAGGTGGAAAGCTCCGACAC
1 ATGCAGATCTTTGTAAAAACCCTTACTGGCAAGACAATCACCCTTGAGGTGGAAAGCTCCGACAC
*
10571271 AATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCCCCTGACCAACAGAGGCTTA
66 AATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGGATCCCCCCTGACCAACAGAGGCTTA
* * * * *
10571336 TCTTCGCCGGGAAACAGCTTGAGGATGGCCGTACCCTTGCTGACTACAACATCCAAAAGGAGTCC
131 TCTTTGCCGGGAAACAACTTGAAGATGGCCGCACCCTTGCTGACTACAACATCCAAAAGGAGTCT
10571401 ACCCTCCACCTTGTCCTTCGTCTCAGGGGTGGC
196 ACCCTCCACCTTGTCCTTCGTCTCAGGGGTGGC
* * *
10571434 ATGCAGATCTTCGTAAAAACCCTTACTGGCAAGACAATCACCCTTGAGGTTGAAAGCTCTGACAC
1 ATGCAGATCTTTGTAAAAACCCTTACTGGCAAGACAATCACCCTTGAGGTGGAAAGCTCCGACAC
* * *
10571499 AATTGATAATGTCAAGGCTAAGATCCAGGATAAAGAAGGGATCCCCCCTGACCAACAGAGGCTTA
66 AATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGGATCCCCCCTGACCAACAGAGGCTTA
* * * * *
10571564 TCTTTGCCGGTAAGCAACTTGAAGATGGTCGCACCCTTGCTGACTACAACATTCAAAAAGAGTCT
131 TCTTTGCCGGGAAACAACTTGAAGATGGCCGCACCCTTGCTGACTACAACATCCAAAAGGAGTCT
*
10571629 ACCCTCCACCTTGTGCTTCGTCTCAGGGGTGGC
196 ACCCTCCACCTTGTCCTTCGTCTCAGGGGTGGC
* * * *
10571662 ATGCAAATATTTGTCAAAACCCTTACTGGCAAGACAATCACCCTTGAAGTGGAAAGCTCCGACAC
1 ATGCAGATCTTTGTAAAAACCCTTACTGGCAAGACAATCACCCTTGAGGTGGAAAGCTCCGACAC
* *
10571727 AATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCTGACCAACAGAGGCTTA
66 AATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGGATCCCCCCTGACCAACAGAGGCTTA
* * * *
10571792 TCTTTGCTGGTAAACAACTGGAGGATGGCCGCACCCTTGCTGACTACAACATCCAGAAA-GAGTC
131 TCTTTGCCGGGAAACAACTTGAAGATGGCCGCACCCTTGCTGACTACAACATCCA-AAAGGAGTC
*
10571856 TACCCTCCACCTTGTCCTTCGTCTTAGGGGTGGC
195 TACCCTCCACCTTGTCCTTCGTCTCAGGGGTGGC
* * * * * * * * * *
10571890 ATGCAGATCTTTGTAAAAACGCTCACTGGAAAAACCATCA-CTTTAGAGGTGGAGAGTTCTGATA
1 ATGCAGATCTTTGTAAAAACCCTTACTGGCAAGACAATCACCCTT-GAGGTGGAAAGCTCCGACA
* * * * * * * *
10571954 CAATTGATAACGTTAAGGCCAAGATTCAGGAC-AAGGAGGGCATCCCACCAGACCAGCAGAGG-T
65 CAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGG-ATCCCCCCTGACCAACAGAGGCT
* * * * * * * *
10572017 TAATTTTTGCTGGGAAACAGCTTGAAGATGGCAGAACCCTTGCAGACTATAACATTCAAAAGGAG
129 T-ATCTTTGCCGGGAAACAACTTGAAGATGGCCGCACCCTTGCTGACTACAACATCCAAAAGGAG
10572082 TCTACCCTCCA
193 TCTACCCTCCA
10572093 TTTGGTGTTG
Statistics
Matches: 578, Mismatches: 76, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
227 14 0.02
228 561 0.97
229 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (228 bp):
ATGCAGATCTTTGTAAAAACCCTTACTGGCAAGACAATCACCCTTGAGGTGGAAAGCTCCGACAC
AATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGGATCCCCCCTGACCAACAGAGGCTTA
TCTTTGCCGGGAAACAACTTGAAGATGGCCGCACCCTTGCTGACTACAACATCCAAAAGGAGTCT
ACCCTCCACCTTGTCCTTCGTCTCAGGGGTGGC
Found at i:10572124 original size:456 final size:455
Alignment explanation
Indices: 10571206--10572332 Score: 1293
Period size: 456 Copynumber: 2.5 Consensus size: 455
10571196 GACACAACAG
* * * * * * *
10571206 ATGCAGATCTTTGTGAAAACTCTTACTGGTAAGACCATCACCCTCGAGGTGGAAAGCTCCGACAC
1 ATGCAAATATTTGTGAAAACCCTTACTGGAAAGACAATCACCCTTGAAGTGGAAAGCTCCGACAC
*
10571271 AATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCCCCTGACCAACAGAGGCTTA
66 AATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAAT-CCCCCTGACCAACAGAGGCTTA
* * * *
10571336 TCTTCGCCGGGAAACAGCTTGAGGATGGCCGTACCCTTGCTGACTACAACATCCA-AAAGGAGTC
130 TCTTTGCTGGGAAACAGCTGGAGGATGGCCGAACCCTTGCTGACTACAACATCCAGAAA-GAGTC
* * *
10571400 CACCCTCCACCTTGTCCTTCGTCTCAGGGGTGGCATGCAGATCTTCGTAAAAACCCTTACTGGCA
194 TACCCTCCACCTTGTCCTTCGTCTCAGGGGTGGCATGCAGATCTTCGTAAAAACCCTCACTGGAA
* * * *
10571465 AGACAATCACCCTTGAGGTTGAAAGCTCTGACACAATTGATAATGTCAAGGCTAAGATCCAGGAT
259 AAACAATCACCCTTGAGGTGGAAAGCTCTGACACAATTGATAACGTCAAGGCCAAGATCCAGGAT
* * * *
10571530 AAAGAAGGGATCCCCCCTGACCAACAGAGGCTTATCTTTGCCGGTAAGCAACTTGAAGATGGTCG
324 AAAGAAGGGATCCCACCAGACCAACAGAGGCTTATCTTTGCCGGGAAACAACTTGAAGATGGTCG
* *
10571595 CACCCTTGCTGACTACAACATTCAAAAAGAGTCTACCCTCCACCTTGTGCTTCGTCTCAGGGGTG
389 AACCCTTGCAGACTACAACATTCAAAAAGAGTCTACCCTCCACCTTGTGCTTCGTCTCAGGGGTG
10571660 GC
454 GC
* *
10571662 ATGCAAATATTTGTCAAAACCCTTACTGGCAAGACAATCACCCTTGAAGTGGAAAGCTCCGACAC
1 ATGCAAATATTTGTGAAAACCCTTACTGGAAAGACAATCACCCTTGAAGTGGAAAGCTCCGACAC
* *
10571727 AATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCTGACCAACAGAGGCTTA
66 AATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCC-CCTGACCAACAGAGGCTTA
* * *
10571792 TCTTTGCTGGTAAACAACTGGAGGATGGCCGCACCCTTGCTGACTACAACATCCAGAAAGAGTCT
130 TCTTTGCTGGGAAACAGCTGGAGGATGGCCGAACCCTTGCTGACTACAACATCCAGAAAGAGTCT
* * *
10571857 ACCCTCCACCTTGTCCTTCGTCTTAGGGGTGGCATGCAGATCTTTGTAAAAACGCTCACTGGAAA
195 ACCCTCCACCTTGTCCTTCGTCTCAGGGGTGGCATGCAGATCTTCGTAAAAACCCTCACTGGAAA
* * * * * * *
10571922 AACCATCA-CTTTAGAGGTGGAGAGTTCTGATACAATTGATAACGTTAAGGCCAAGATTCAGGA-
260 AACAATCACCCTT-GAGGTGGAAAGCTCTGACACAATTGATAACGTCAAGGCCAAGATCCAGGAT
* * * * * *
10571985 CAAGGAGGGCATCCCACCAGACCAGCAGAGG-TTAATTTTTGCTGGGAAACAGCTTGAAGATGG-
324 AAAGAAGGG-ATCCCACCAGACCAACAGAGGCTT-ATCTTTGCCGGGAAACAACTTGAAGATGGT
* * *
10572048 CAGAACCCTTGCAGACTATAACATTCAAAAGGAGTCTACCCTCCA-TTTGGTG-TTGCGTCTTC-
387 C-GAACCCTTGCAGACTACAACATTCAAAAAGAGTCTACCCTCCACCTT-GTGCTT-CGTC-TCA
* *
10572110 GTGGTGGT
448 GGGGTGGC
* * * * * * * * * * *
10572118 ATGCAAATTTTTGTGAAGACCCTCACAGGAAAGACTATTA-CCTTGGAAGTTGAGAGTTCTGATA
1 ATGCAAATATTTGTGAAAACCCTTACTGGAAAGACAATCACCCTT-GAAGTGGAAAGCTCCGACA
* * * * * * * * * * *
10572182 CGATTGACAATGTAAAAGCAAAGATTCAGGACAAGGAGGGAATTCCCCCGGATCAGCAGAGG-TT
65 CAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAA-TCCCCCTGACCAACAGAGGCTT
* * * * * * * *
10572246 GATCTTTGCTGGGAAGCAGTTGGAGGACGGTCGAACTCTAGCTGACTACAATATCCAGAAGGAGT
129 -ATCTTTGCTGGGAAACAGCTGGAGGATGGCCGAACCCTTGCTGACTACAACATCCAGAAAGAGT
* * *
10572311 CTACTCTGCATCTTGTCCTTCG
193 CTACCCTCCACCTTGTCCTTCG
10572333 CCTCCGTGGT
Statistics
Matches: 569, Mismatches: 90, Indels: 24
0.83 0.13 0.04
Matches are distributed among these distances:
455 26 0.05
456 534 0.94
457 9 0.02
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.23
Consensus pattern (455 bp):
ATGCAAATATTTGTGAAAACCCTTACTGGAAAGACAATCACCCTTGAAGTGGAAAGCTCCGACAC
AATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCCCTGACCAACAGAGGCTTAT
CTTTGCTGGGAAACAGCTGGAGGATGGCCGAACCCTTGCTGACTACAACATCCAGAAAGAGTCTA
CCCTCCACCTTGTCCTTCGTCTCAGGGGTGGCATGCAGATCTTCGTAAAAACCCTCACTGGAAAA
ACAATCACCCTTGAGGTGGAAAGCTCTGACACAATTGATAACGTCAAGGCCAAGATCCAGGATAA
AGAAGGGATCCCACCAGACCAACAGAGGCTTATCTTTGCCGGGAAACAACTTGAAGATGGTCGAA
CCCTTGCAGACTACAACATTCAAAAAGAGTCTACCCTCCACCTTGTGCTTCGTCTCAGGGGTGGC
Found at i:10572241 original size:228 final size:227
Alignment explanation
Indices: 10571206--10572332 Score: 1113
Period size: 228 Copynumber: 4.9 Consensus size: 227
10571196 GACACAACAG
* * * * * * * * *
10571206 ATGCAGATCTTTGTGAAAACTCTTACTGGTAAGACCATCACCCTCGAGGTGGAAAGCTCCGACAC
1 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAGACAATCACCCTTGAAGTGGAAAGCTCTGACAC
* *
10571271 AATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCCCCTGACCAACAGAGGCTTA
66 AATTGATAATGTCAAGGCCAAGATCCAGGACAAGG-AGGGATCCCACCTGACCAACAGAGGCTTA
* * * * * *
10571336 TCTTCGCCGGGAAACAGCTTGAGGATGGCCGTACCCTTGCTGACTACAACATCCAAAAGGAGTCC
130 TCTTTGCTGGGAAACAACTTGAAGATGGCCGCACCCTTGCTGACTACAACATCCAAAAGGAGTCT
10571401 ACCCTCCACCTTGTCCTTCGTCTCAGGGGTGGC
195 ACCCTCCACCTTGTCCTTCGTCTCAGGGGTGGC
* * * * * *
10571434 ATGCAGATCTTCGTAAAAACCCTTACTGGCAAGACAATCACCCTTGAGGTTGAAAGCTCTGACAC
1 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAGACAATCACCCTTGAAGTGGAAAGCTCTGACAC
* * * *
10571499 AATTGATAATGTCAAGGCTAAGATCCAGGATAAAGAAGGGATCCCCCCTGACCAACAGAGGCTTA
66 AATTGATAATGTCAAGGCCAAGATCCAGGA-CAAGGAGGGATCCCACCTGACCAACAGAGGCTTA
* * * * * *
10571564 TCTTTGCCGGTAAGCAACTTGAAGATGGTCGCACCCTTGCTGACTACAACATTCAAAAAGAGTCT
130 TCTTTGCTGGGAAACAACTTGAAGATGGCCGCACCCTTGCTGACTACAACATCCAAAAGGAGTCT
*
10571629 ACCCTCCACCTTGTGCTTCGTCTCAGGGGTGGC
195 ACCCTCCACCTTGTCCTTCGTCTCAGGGGTGGC
* * * * *
10571662 ATGCAAATATTTGTCAAAACCCTTACTGGCAAGACAATCACCCTTGAAGTGGAAAGCTCCGACAC
1 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAGACAATCACCCTTGAAGTGGAAAGCTCTGACAC
* * * *
10571727 AATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCTGACCAACAGAGGCTTA
66 AATTGATAATGTCAAGGCCAAGATCCAGGAC-AAGGAGGGATCCCACCTGACCAACAGAGGCTTA
* * *
10571792 TCTTTGCTGGTAAACAACTGGAGGATGGCCGCACCCTTGCTGACTACAACATCCAGAAA-GAGTC
130 TCTTTGCTGGGAAACAACTTGAAGATGGCCGCACCCTTGCTGACTACAACATCCA-AAAGGAGTC
*
10571856 TACCCTCCACCTTGTCCTTCGTCTTAGGGGTGGC
194 TACCCTCCACCTTGTCCTTCGTCTCAGGGGTGGC
* * * * * * * * *
10571890 ATGCAGATCTTTGTAAAAACGCTCACTGGAAAAACCATCA-CTTTAGAGGTGGAGAGTTCTGATA
1 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAGACAATCACCCTT-GAAGTGGAAAGCTCTGACA
* * * * *
10571954 CAATTGATAACGTTAAGGCCAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAGCAGAGG-TT
65 CAATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGG-ATCCCACCTGACCAACAGAGGCTT
* * * * * * *
10572018 AATTTTTGCTGGGAAACAGCTTGAAGATGGCAGAACCCTTGCAGACTATAACATTCAAAAGGAGT
129 -ATCTTTGCTGGGAAACAACTTGAAGATGGCCGCACCCTTGCTGACTACAACATCCAAAAGGAGT
* * * *
10572083 CTACCCTCCA-TTTGGT-GTTGCGTCTTC-GTGGTGGT
193 CTACCCTCCACCTT-GTCCTT-CGTC-TCAGGGGTGGC
* * * * * * * * * *
10572118 ATGCAAATTTTTGTGAAGACCCTCACAGGAAAGACTATTA-CCTTGGAAGTTGAGAGTTCTGATA
1 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAGACAATCACCCTT-GAAGTGGAAAGCTCTGACA
* * * * * * * * *
10572182 CGATTGACAATGTAAAAGCAAAGATTCAGGACAAGGAGGGAATTCCC-CCGGATCAGCAGAGG-T
65 CAATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGG-A-TCCCACCTGACCAACAGAGGCT
* * * * * * * * * *
10572245 TGATCTTTGCTGGGAAGC-AGTTGGAGGACGGTCGAACTCTAGCTGACTACAATATCCAGAAGGA
128 T-ATCTTTGCTGGGAAACAACTT-GAAGATGGCCGCACCCTTGCTGACTACAACATCCAAAAGGA
* * *
10572309 GTCTACTCTGCATCTTGTCCTTCG
191 GTCTACCCTCCACCTTGTCCTTCG
10572333 CCTCCGTGGT
Statistics
Matches: 762, Mismatches: 123, Indels: 28
0.83 0.13 0.03
Matches are distributed among these distances:
227 20 0.03
228 727 0.95
229 15 0.02
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.23
Consensus pattern (227 bp):
ATGCAAATCTTTGTAAAAACCCTCACTGGAAAGACAATCACCCTTGAAGTGGAAAGCTCTGACAC
AATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGATCCCACCTGACCAACAGAGGCTTAT
CTTTGCTGGGAAACAACTTGAAGATGGCCGCACCCTTGCTGACTACAACATCCAAAAGGAGTCTA
CCCTCCACCTTGTCCTTCGTCTCAGGGGTGGC
Found at i:10574177 original size:9 final size:9
Alignment explanation
Indices: 10574163--10574194 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
10574153 CCATTTGTTC
10574163 TTGCATCTG
1 TTGCATCTG
10574172 TTGCATCTG
1 TTGCATCTG
10574181 TTGCATC-G
1 TTGCATCTG
10574189 TTGCAT
1 TTGCAT
10574195 GTCTTAAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 7 0.30
9 16 0.70
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.44
Consensus pattern (9 bp):
TTGCATCTG
Found at i:10575543 original size:30 final size:30
Alignment explanation
Indices: 10575509--10575567 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
10575499 ACTTAACAAG
*
10575509 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
10575539 CAAATGCCTCTAAAATAATAACAAAATTA
1 CAAATGCCTCTAAAATAATAACAAAATTA
10575568 TCAATAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.56, C:0.15, G:0.03, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:10578079 original size:3 final size:3
Alignment explanation
Indices: 10578071--10578121 Score: 66
Period size: 3 Copynumber: 17.0 Consensus size: 3
10578061 ATAAATTTGA
* * * *
10578071 TAT TAT TAT GAT TAT GAT TAT TAT TAT CAT TAG TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
10578119 TAT
1 TAT
10578122 ATTTCTATCT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.02, G:0.06, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:10578176 original size:16 final size:16
Alignment explanation
Indices: 10578155--10578188 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
10578145 TAAACTTTAA
* *
10578155 ATATATTTATCTTATT
1 ATATATTGATATTATT
10578171 ATATATTGATATTATT
1 ATATATTGATATTATT
10578187 AT
1 AT
10578189 TTGCTTATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (16 bp):
ATATATTGATATTATT
Found at i:10582839 original size:9 final size:9
Alignment explanation
Indices: 10582820--10582856 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
10582810 TGAGTTTTTA
10582820 AATTCGAAT
1 AATTCGAAT
10582829 AACTT-GAAT
1 AA-TTCGAAT
10582838 AATTCGAAT
1 AATTCGAAT
10582847 AATTCGAAT
1 AATTCGAAT
10582856 A
1 A
10582857 TTAAACTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 2 0.08
9 22 0.85
10 2 0.08
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:10582939 original size:30 final size:30
Alignment explanation
Indices: 10582905--10582989 Score: 152
Period size: 30 Copynumber: 2.8 Consensus size: 30
10582895 AAACCTTTTT
**
10582905 ACTTTTCCCTTAAAACTTTTACTCCTTCCC
1 ACTTTTCCCCCAAAACTTTTACTCCTTCCC
10582935 ACTTTTCCCCCAAAACTTTTACTCCTTCCC
1 ACTTTTCCCCCAAAACTTTTACTCCTTCCC
10582965 ACTTTTCCCCCAAAACTTTTACTCC
1 ACTTTTCCCCCAAAACTTTTACTCC
10582990 CCTCCCCTCC
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.21, C:0.40, G:0.00, T:0.39
Consensus pattern (30 bp):
ACTTTTCCCCCAAAACTTTTACTCCTTCCC
Found at i:10583133 original size:30 final size:30
Alignment explanation
Indices: 10583099--10583156 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
10583089 AAACTTTTTA
*
10583099 TTTTCTCCC-AAAATTTTTACTCCCTTCCAC
1 TTTTC-CCCTAAAACTTTTACTCCCTTCCAC
*
10583129 TTTTCCCCTAAAACTTTTATTCCCTTCC
1 TTTTCCCCTAAAACTTTTACTCCCTTCC
10583157 CATCCCACCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 3 0.12
30 22 0.88
ACGTcount: A:0.19, C:0.36, G:0.00, T:0.45
Consensus pattern (30 bp):
TTTTCCCCTAAAACTTTTACTCCCTTCCAC
Found at i:10583312 original size:8 final size:8
Alignment explanation
Indices: 10583299--10583324 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
10583289 TAAATTTCAC
10583299 ATTTATAT
1 ATTTATAT
10583307 ATTTATAT
1 ATTTATAT
10583315 ATTTATAT
1 ATTTATAT
10583323 AT
1 AT
10583325 GAATTGTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
ATTTATAT
Found at i:10584883 original size:19 final size:19
Alignment explanation
Indices: 10584859--10584895 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
10584849 AAATTCCTTA
10584859 TTCCA-TTCGCCAACTAACT
1 TTCCATTTC-CCAACTAACT
10584878 TTCCATTTCCCAACTAAC
1 TTCCATTTCCCAACTAAC
10584896 ATGTAGGAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.27, C:0.38, G:0.03, T:0.32
Consensus pattern (19 bp):
TTCCATTTCCCAACTAACT
Found at i:10586180 original size:24 final size:24
Alignment explanation
Indices: 10586138--10586189 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
10586128 AATCAAAGTC
** *
10586138 AAATATATTATGTTAATAAATGCT
1 AAATATATTATACTAATAAATACT
*
10586162 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
10586186 AAAT
1 AAAT
10586190 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:10590884 original size:13 final size:14
Alignment explanation
Indices: 10590849--10590897 Score: 52
Period size: 13 Copynumber: 3.7 Consensus size: 14
10590839 TTTTAATAAA
10590849 TATATTATA-TTAT
1 TATATTATATTTAT
*
10590862 TGA-ATAATATTTA-
1 T-ATATTATATTTAT
10590875 TATATTATA-TTAT
1 TATATTATATTTAT
10590888 TATATTATAT
1 TATATTATAT
10590898 ATAAAGTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
12 4 0.14
13 21 0.72
14 4 0.14
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (14 bp):
TATATTATATTTAT
Found at i:10591717 original size:37 final size:35
Alignment explanation
Indices: 10591679--10591751 Score: 83
Period size: 36 Copynumber: 2.0 Consensus size: 35
10591669 ATGTGTGGAA
*
10591679 TTGAAATGAATATTGACTTGAAAATGGAAAAAGTGAATT
1 TTGAAATGAAT-GTGA-TTGAAAAT-GAAAAAGTGAA-T
* *
10591718 TTGAATTGAATGTGATTGAAAGTGAAAAAGTGAA
1 TTGAAATGAATGTGATTGAAAATGAAAAAGTGAA
10591752 ACTGAATTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 11 0.35
37 7 0.23
38 3 0.10
39 10 0.32
ACGTcount: A:0.45, C:0.01, G:0.23, T:0.30
Consensus pattern (35 bp):
TTGAAATGAATGTGATTGAAAATGAAAAAGTGAAT
Found at i:10591751 original size:36 final size:37
Alignment explanation
Indices: 10591696--10591768 Score: 96
Period size: 36 Copynumber: 2.0 Consensus size: 37
10591686 GAATATTGAC
**
10591696 TTGAAAATGGAAAAAGTGAATTTTGAATTG-AATGTGA
1 TTGAAAATGGAAAAAGTGAA-ACTGAATTGAAATGTGA
*
10591733 TTGAAAGT-GAAAAAGTGAAACTGAATTGAAATGTGA
1 TTGAAAATGGAAAAAGTGAAACTGAATTGAAATGTGA
10591769 AATTGGAGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
35 7 0.22
36 18 0.56
37 7 0.22
ACGTcount: A:0.45, C:0.01, G:0.25, T:0.29
Consensus pattern (37 bp):
TTGAAAATGGAAAAAGTGAAACTGAATTGAAATGTGA
Found at i:10592488 original size:2 final size:2
Alignment explanation
Indices: 10592481--10592517 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
10592471 ACACAAGTCG
* *
10592481 TA TA TA TA TA TA TA TA TA TA TA TA TG TA AA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10592518 GCTAAATGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:10592518 original size:12 final size:12
Alignment explanation
Indices: 10592486--10592524 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
10592476 AGTCGTATAT
* *
10592486 ATATATATATAT
1 ATATATATGTAA
10592498 ATATATATGTAA
1 ATATATATGTAA
10592510 ATATATATGCTAA
1 ATATATATG-TAA
10592523 AT
1 AT
10592525 GATCTTGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 19 0.79
13 5 0.21
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.44
Consensus pattern (12 bp):
ATATATATGTAA
Found at i:10593121 original size:13 final size:13
Alignment explanation
Indices: 10593103--10593168 Score: 78
Period size: 13 Copynumber: 5.1 Consensus size: 13
10593093 AGTTCTTTAT
10593103 TGCTTTTGAGAAA
1 TGCTTTTGAGAAA
*
10593116 TGCTTTTGAGAAG
1 TGCTTTTGAGAAA
* *
10593129 TGCTTTTCAGAAG
1 TGCTTTTGAGAAA
* *
10593142 TACTTTTGAGAAT
1 TGCTTTTGAGAAA
*
10593155 TACTTTTGAGAAA
1 TGCTTTTGAGAAA
10593168 T
1 T
10593169 TTGAGTGTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 47 1.00
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (13 bp):
TGCTTTTGAGAAA
Found at i:10593140 original size:26 final size:26
Alignment explanation
Indices: 10593103--10593168 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
10593093 AGTTCTTTAT
*
10593103 TGCTTTTGAGAAATGCTTTTGAGAAG
1 TGCTTTTGAGAAATACTTTTGAGAAG
* * *
10593129 TGCTTTTCAGAAGTACTTTTGAGAAT
1 TGCTTTTGAGAAATACTTTTGAGAAG
*
10593155 TACTTTTGAGAAAT
1 TGCTTTTGAGAAAT
10593169 TTGAGTGTTT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (26 bp):
TGCTTTTGAGAAATACTTTTGAGAAG
Found at i:10593779 original size:22 final size:21
Alignment explanation
Indices: 10593754--10593797 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
10593744 AAGCATCTGA
*
10593754 AAATGATTTGGTTATATTCAAT
1 AAATGATTTGGTTA-ATACAAT
10593776 AAATGATTTGGTTAATACAAT
1 AAATGATTTGGTTAATACAAT
10593797 A
1 A
10593798 CTTATATTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.41, C:0.05, G:0.14, T:0.41
Consensus pattern (21 bp):
AAATGATTTGGTTAATACAAT
Found at i:10595338 original size:15 final size:17
Alignment explanation
Indices: 10595309--10595341 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
10595299 AATAAAATAA
10595309 TAATAATAATAATAATT
1 TAATAATAATAATAATT
10595326 TAATAA-AAT-ATAATT
1 TAATAATAATAATAATT
10595341 T
1 T
10595342 TATATTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 3 0.19
17 6 0.38
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
TAATAATAATAATAATT
Found at i:10595384 original size:13 final size:13
Alignment explanation
Indices: 10595366--10595391 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10595356 ATTTTTTGAA
10595366 AAAAATACGGGTC
1 AAAAATACGGGTC
10595379 AAAAATACGGGTC
1 AAAAATACGGGTC
10595392 GGGTCTGGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.23, T:0.15
Consensus pattern (13 bp):
AAAAATACGGGTC
Found at i:10597768 original size:22 final size:21
Alignment explanation
Indices: 10597733--10597777 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
10597723 TACCTAATTT
*
10597733 TTTTCTTCTTTTCCTTCCTTC
1 TTTTCTTCTCTTCCTTCCTTC
10597754 TTTTCTTCTGCTTCCTTCCTTC
1 TTTTCTTCT-CTTCCTTCCTTC
10597776 TT
1 TT
10597778 CTTTCTTCCG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.00, C:0.33, G:0.02, T:0.64
Consensus pattern (21 bp):
TTTTCTTCTCTTCCTTCCTTC
Found at i:10597785 original size:18 final size:18
Alignment explanation
Indices: 10597735--10597786 Score: 54
Period size: 22 Copynumber: 2.8 Consensus size: 18
10597725 CCTAATTTTT
10597735 TTCTTC-TT-TTCCTTCC
1 TTCTTCTTTCTTCCTTCC
10597751 TTCTTTTCTTCTGCTTCCTTCC
1 TTC--TTCTT-T-CTTCCTTCC
10597773 TTCTTCTTTCTTCC
1 TTCTTCTTTCTTCC
10597787 GTTTTTGTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
16 3 0.10
18 8 0.27
19 2 0.07
20 6 0.20
22 11 0.37
ACGTcount: A:0.00, C:0.37, G:0.02, T:0.62
Consensus pattern (18 bp):
TTCTTCTTTCTTCCTTCC
Found at i:10597892 original size:27 final size:26
Alignment explanation
Indices: 10597843--10597935 Score: 141
Period size: 27 Copynumber: 3.5 Consensus size: 26
10597833 AAAATCACAG
*
10597843 CATTGGCGCCTTCTAATATGGCACCAC
1 CATTGGCGCCTCCTAATA-GGCACCAC
10597870 CATTGGCGCCTCCTAGATAGGCACCAC
1 CATTGGCGCCTCCTA-ATAGGCACCAC
* *
10597897 CATTGGTGCCTCCAAATAGGCACCAC
1 CATTGGCGCCTCCTAATAGGCACCAC
10597923 CATTGGCGCCTCC
1 CATTGGCGCCTCC
10597936 CAAATAAGCG
Statistics
Matches: 61, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
26 23 0.38
27 35 0.57
28 3 0.05
ACGTcount: A:0.22, C:0.37, G:0.20, T:0.22
Consensus pattern (26 bp):
CATTGGCGCCTCCTAATAGGCACCAC
Found at i:10598138 original size:27 final size:29
Alignment explanation
Indices: 10598077--10598138 Score: 67
Period size: 30 Copynumber: 2.2 Consensus size: 29
10598067 AACCCATTTT
*
10598077 GGTAATTTTTTTTTTCTGACATACTATTTCA
1 GGTAATTTTTTTTTTCT-A-ATACTAATTCA
*
10598108 -GTAATTTTTTTTTTCT-ATCCTAATT-A
1 GGTAATTTTTTTTTTCTAATACTAATTCA
10598134 GGTAA
1 GGTAA
10598139 AAAACCCTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
26 1 0.04
27 11 0.39
30 16 0.57
ACGTcount: A:0.24, C:0.11, G:0.10, T:0.55
Consensus pattern (29 bp):
GGTAATTTTTTTTTTCTAATACTAATTCA
Found at i:10600188 original size:21 final size:22
Alignment explanation
Indices: 10600146--10600203 Score: 61
Period size: 21 Copynumber: 2.7 Consensus size: 22
10600136 AAAATAAAAT
10600146 AATATATAAAAGAAA-ATCTT-A
1 AATA-ATAAAAGAAATATCTTAA
10600167 AATAATAAAAGAAATAGT-TTAA
1 AATAATAAAAGAAATA-TCTTAA
*
10600189 AAAAATAAAA-AAATA
1 AATAATAAAAGAAATA
10600204 AAAAAAATGG
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
20 10 0.30
21 12 0.36
22 11 0.33
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.24
Consensus pattern (22 bp):
AATAATAAAAGAAATATCTTAA
Found at i:10600988 original size:55 final size:55
Alignment explanation
Indices: 10600908--10601020 Score: 226
Period size: 55 Copynumber: 2.1 Consensus size: 55
10600898 TTTTACAAAG
10600908 AAAAATCGAAGAAGAACGATGCAAGAAAACGTTCGGCCTTTATAGCCAAAATACA
1 AAAAATCGAAGAAGAACGATGCAAGAAAACGTTCGGCCTTTATAGCCAAAATACA
10600963 AAAAATCGAAGAAGAACGATGCAAGAAAACGTTCGGCCTTTATAGCCAAAATACA
1 AAAAATCGAAGAAGAACGATGCAAGAAAACGTTCGGCCTTTATAGCCAAAATACA
10601018 AAA
1 AAA
10601021 TCTTTCCGTT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 58 1.00
ACGTcount: A:0.49, C:0.18, G:0.18, T:0.16
Consensus pattern (55 bp):
AAAAATCGAAGAAGAACGATGCAAGAAAACGTTCGGCCTTTATAGCCAAAATACA
Found at i:10602049 original size:8 final size:8
Alignment explanation
Indices: 10602036--10602063 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
10602026 ATCGACAGAG
10602036 AGGAATGA
1 AGGAATGA
10602044 AGGAATGA
1 AGGAATGA
10602052 AGGAATGA
1 AGGAATGA
10602060 AGGA
1 AGGA
10602064 GGAGAGTGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.39, T:0.11
Consensus pattern (8 bp):
AGGAATGA
Found at i:10607643 original size:17 final size:18
Alignment explanation
Indices: 10607616--10607649 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
10607606 AAAGTCGTCG
*
10607616 TTTTAACCTTTTTTTGTT
1 TTTTAACCTTTTGTTGTT
10607634 TTTTAA-CTTTTGTTGT
1 TTTTAACCTTTTGTTGT
10607650 CAGAAATTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.12, C:0.09, G:0.09, T:0.71
Consensus pattern (18 bp):
TTTTAACCTTTTGTTGTT
Found at i:10614497 original size:16 final size:17
Alignment explanation
Indices: 10614476--10614515 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
10614466 ATTATCTTAG
10614476 ATTTTTTAGTGT-TTCT
1 ATTTTTTAGTGTATTCT
*
10614492 ATTTTTT-GTGTATTTT
1 ATTTTTTAGTGTATTCT
10614508 ATTTTTTA
1 ATTTTTTA
10614516 ATCAAATTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 4 0.19
16 17 0.81
ACGTcount: A:0.15, C:0.03, G:0.10, T:0.72
Consensus pattern (17 bp):
ATTTTTTAGTGTATTCT
Found at i:10620740 original size:18 final size:19
Alignment explanation
Indices: 10620703--10620745 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
10620693 GACGGCAACA
*
10620703 AAAATAAAAGGGAAATAAAG
1 AAAATAAAA-GGAAAGAAAG
*
10620723 GAAATAAAA-GAAAGAAAG
1 AAAATAAAAGGAAAGAAAG
10620741 AAAAT
1 AAAAT
10620746 TGCATGAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 12 0.60
20 8 0.40
ACGTcount: A:0.72, C:0.00, G:0.19, T:0.09
Consensus pattern (19 bp):
AAAATAAAAGGAAAGAAAG
Found at i:10621149 original size:21 final size:21
Alignment explanation
Indices: 10621123--10621162 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
10621113 TGAAGACTTA
* *
10621123 AATGAAGTGTTATGTGATAGT
1 AATGAAGTGTAAAGTGATAGT
10621144 AATGAAGTGTAAAGTGATA
1 AATGAAGTGTAAAGTGATA
10621163 AAATAATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.28, T:0.33
Consensus pattern (21 bp):
AATGAAGTGTAAAGTGATAGT
Found at i:10630837 original size:23 final size:23
Alignment explanation
Indices: 10630811--10630902 Score: 80
Period size: 23 Copynumber: 3.9 Consensus size: 23
10630801 GGACTCACCA
10630811 CAGCTTGTATGAGCTTACCGTTT
1 CAGCTTGTATGAGCTTACCGTTT
* *
10630834 CAGC-TCTACGGAGCTTACCGTTT
1 CAGCTTGTA-TGAGCTTACCGTTT
*
10630857 CAGCTCG-ATAGAGCTTACCGTTTAT
1 CAGCTTGTAT-GAGCTTACCG-TT-T
* *
10630882 CAGCTCAGAATGAGCTTACCG
1 CAGCT-TGTATGAGCTTACCG
10630903 ATCATGGCTC
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
22 3 0.05
23 32 0.57
24 2 0.04
25 6 0.11
26 11 0.20
27 2 0.04
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (23 bp):
CAGCTTGTATGAGCTTACCGTTT
Found at i:10640105 original size:20 final size:19
Alignment explanation
Indices: 10640058--10640108 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 19
10640048 TATTCTTATT
*
10640058 CATTATTATATATATGTATA
1 CATTATTTTA-ATATGTATA
10640078 CATTATTTTAATATGTATA
1 CATTATTTTAATATGTATA
10640097 CTATTATTTTAA
1 C-ATTATTTTAA
10640109 GTTATTATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 10 0.34
20 19 0.66
ACGTcount: A:0.37, C:0.06, G:0.04, T:0.53
Consensus pattern (19 bp):
CATTATTTTAATATGTATA
Found at i:10640159 original size:3 final size:3
Alignment explanation
Indices: 10640138--10640241 Score: 74
Period size: 3 Copynumber: 35.3 Consensus size: 3
10640128 ATTTAAGCTC
* *
10640138 ATT ATGT ATT ATGT ATT ATT A-T ATT GTT ATT ATT ATT ATT -TT GTT
1 ATT AT-T ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
** * * * *
10640183 -TT AAA ATT ATT ATT ATT ATT ATT ATC AGT ATT ATA AAT -TT ATT ATGT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T
10640230 ATT ATT A-T ATT A
1 ATT ATT ATT ATT A
10640242 AGTTTCTTCA
Statistics
Matches: 79, Mismatches: 14, Indels: 16
0.72 0.13 0.15
Matches are distributed among these distances:
2 9 0.11
3 61 0.77
4 9 0.11
ACGTcount: A:0.34, C:0.01, G:0.06, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:10640216 original size:18 final size:16
Alignment explanation
Indices: 10640138--10640241 Score: 83
Period size: 15 Copynumber: 6.6 Consensus size: 16
10640128 ATTTAAGCTC
10640138 ATTATGTATTATGTATT
1 ATTAT-TATTATGTATT
*
10640155 ATTA-TATTGT-TATT
1 ATTATTATTATGTATT
* *
10640169 ATTATTATTTTGTTTT
1 ATTATTATTATGTATT
**
10640185 AAAATTATTAT-TATT
1 ATTATTATTATGTATT
*
10640200 ATTATTATCA-GTATT
1 ATTATTATTATGTATT
*
10640215 ATAAATTTATTATGTATT
1 AT-TA-TTATTATGTATT
10640233 ATTA-TATTA
1 ATTATTATTA
10640242 AGTTTCTTCA
Statistics
Matches: 68, Mismatches: 13, Indels: 14
0.72 0.14 0.15
Matches are distributed among these distances:
14 8 0.12
15 31 0.46
16 12 0.18
17 10 0.15
18 7 0.10
ACGTcount: A:0.34, C:0.01, G:0.06, T:0.60
Consensus pattern (16 bp):
ATTATTATTATGTATT
Found at i:10640416 original size:2 final size:2
Alignment explanation
Indices: 10640355--10640399 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
10640345 ACATACATCT
10640355 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10640396 TA TA
1 TA TA
10640400 ACTTAAAACT
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:10640745 original size:2 final size:2
Alignment explanation
Indices: 10640738--10640763 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10640728 TCATAATTTC
10640738 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
10640764 CACTTATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10641985 original size:27 final size:27
Alignment explanation
Indices: 10641955--10642167 Score: 228
Period size: 27 Copynumber: 8.1 Consensus size: 27
10641945 TAAGGTGTAG
10641955 TATTTATAACAGTATATTAAAACAATA
1 TATTTATAACAGTATATTAAAACAATA
* * *
10641982 TATTTATAACAGTTTATTAAAATATTA
1 TATTTATAACAGTATATTAAAACAATA
* *
10642009 TA-TTA-ACACAGTATATTTATAACAGTA
1 TATTTATA-ACAGTATA-TTAAAACAATA
* * * * *
10642036 TA-CTAAAACAATATATTAAAATAGTA
1 TATTTATAACAGTATATTAAAACAATA
10642062 TATTTATAACAGTATATTAAAACAATA
1 TATTTATAACAGTATATTAAAACAATA
*
10642089 TATTTATAACAGTATATTAAAACAGTA
1 TATTTATAACAGTATATTAAAACAATA
* *
10642116 TA-TTAAAACAATATATT---ACAA-A
1 TATTTATAACAGTATATTAAAACAATA
10642138 T-TTTATAACAGTATATTAAAACAATA
1 TATTTATAACAGTATATTAAAACAATA
10642164 TATT
1 TATT
10642168 ACATTAAAAA
Statistics
Matches: 154, Mismatches: 22, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
22 15 0.10
23 3 0.02
25 5 0.03
26 36 0.23
27 94 0.61
28 1 0.01
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (27 bp):
TATTTATAACAGTATATTAAAACAATA
Found at i:10642012 original size:40 final size:40
Alignment explanation
Indices: 10641955--10642133 Score: 114
Period size: 40 Copynumber: 4.5 Consensus size: 40
10641945 TAAGGTGTAG
* *
10641955 TATTTATAACAGTATATTAAAACAATATATTTATAACAGTT
1 TATTTATAACAGTATATTAAAACAATATA-TTAAAACAGTA
* * * * * *
10641996 TA-TTAAAATATTATATTAACACAGTATATTTATAACAGTA
1 TATTTATAACAGTATATTAAAACAATATA-TTAAAACAGTA
* * * * * *
10642036 TA-CTAAAACAATATATTAAAATAGTATATTTATAACAGTA
1 TATTTATAACAGTATATTAAAACAATATA-TTAAAACAGTA
* * * *
10642076 TA-TTAAAACAATATATTTATAACAGTATATTAAAACAGTA
1 TATTTATAACAGTATA-TTAAAACAATATATTAAAACAGTA
* *
10642116 TA-TTAAAACAATATATTA
1 TATTTATAACAGTATATTA
10642134 CAAATTTTAT
Statistics
Matches: 122, Mismatches: 15, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
39 3 0.02
40 106 0.87
41 13 0.11
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.38
Consensus pattern (40 bp):
TATTTATAACAGTATATTAAAACAATATATTAAAACAGTA
Found at i:10642051 original size:67 final size:68
Alignment explanation
Indices: 10641955--10642132 Score: 236
Period size: 67 Copynumber: 2.7 Consensus size: 68
10641945 TAAGGTGTAG
* * * * *
10641955 TATTTATAACAGTATATTAAAACAATATATTTATAACAGTTTA-TTAAAATATTATATTAACACA
1 TATTTATAACAGTATATTAAAACAATATATTTAAAACAGTATATTTAAAACAGTATATTAAAACA
*
10642019 GTA
66 ATA
* * *
10642022 TATTTATAACAGTATACTAAAACAATATA-TTAAAATAGTATATTTATAACAGTATATTAAAACA
1 TATTTATAACAGTATATTAAAACAATATATTTAAAACAGTATATTTAAAACAGTATATTAAAACA
10642086 ATA
66 ATA
* *
10642089 TATTTATAACAGTATATTAAAACAGTATA-TTAAAACAATATATT
1 TATTTATAACAGTATATTAAAACAATATATTTAAAACAGTATATT
10642133 ACAAATTTTA
Statistics
Matches: 97, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
66 10 0.10
67 87 0.90
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.38
Consensus pattern (68 bp):
TATTTATAACAGTATATTAAAACAATATATTTAAAACAGTATATTTAAAACAGTATATTAAAACA
ATA
Found at i:10643161 original size:18 final size:18
Alignment explanation
Indices: 10643138--10643177 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
10643128 TTTTTAAGTA
10643138 AATAAAAATGTTGCAAAG
1 AATAAAAATGTTGCAAAG
10643156 AATAAAAATGTTGCAAAG
1 AATAAAAATGTTGCAAAG
10643174 AATA
1 AATA
10643178 CTATACTAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.57, C:0.05, G:0.15, T:0.23
Consensus pattern (18 bp):
AATAAAAATGTTGCAAAG
Found at i:10643724 original size:16 final size:16
Alignment explanation
Indices: 10643700--10643730 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10643690 AAACTACTTC
*
10643700 AAATTGGGTTAACAGG
1 AAATAGGGTTAACAGG
10643716 AAATAGGGTTAACAG
1 AAATAGGGTTAACAG
10643731 CAAACTCACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (16 bp):
AAATAGGGTTAACAGG
Found at i:10646408 original size:31 final size:31
Alignment explanation
Indices: 10646372--10646433 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
10646362 AGATAATTTT
10646372 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
10646403 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
10646434 TAATTTTCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Found at i:10647016 original size:10 final size:10
Alignment explanation
Indices: 10646947--10647016 Score: 61
Period size: 10 Copynumber: 6.7 Consensus size: 10
10646937 TTATTCTTTA
*
10646947 AAAAAAAAGC
1 AAAAAAACGC
*
10646957 -AAAAAGCGC
1 AAAAAAACGC
10646966 AAAAAAACGC
1 AAAAAAACGC
* *
10646976 AAAAAAGAAGA
1 AAAAAA-ACGC
10646987 AGAAAAAAGCGC
1 A-AAAAAA-CGC
10646999 AAAAAAAACGC
1 -AAAAAAACGC
10647010 AAAAAAA
1 AAAAAAA
10647017 AAGTTGCTTA
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
9 7 0.15
10 21 0.44
11 7 0.15
12 12 0.25
13 1 0.02
ACGTcount: A:0.73, C:0.13, G:0.14, T:0.00
Consensus pattern (10 bp):
AAAAAAACGC
Found at i:10652538 original size:31 final size:31
Alignment explanation
Indices: 10652502--10652563 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
10652492 AGATAATTTT
10652502 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
10652533 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
10652564 TAATTTGCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Found at i:10652874 original size:3 final size:3
Alignment explanation
Indices: 10652866--10652912 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
10652856 ATCTATCCTT
10652866 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
10652913 TAACTAATTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:10653179 original size:9 final size:9
Alignment explanation
Indices: 10653165--10653222 Score: 89
Period size: 9 Copynumber: 6.4 Consensus size: 9
10653155 TTTGGTTAAA
10653165 AATTAACCG
1 AATTAACCG
*
10653174 AATTAACCA
1 AATTAACCG
10653183 AATTAACCG
1 AATTAACCG
*
10653192 AATTACCCG
1 AATTAACCG
*
10653201 AATTAACCT
1 AATTAACCG
10653210 AATTAACCG
1 AATTAACCG
10653219 AATT
1 AATT
10653223 GAATCACTAC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 43 1.00
ACGTcount: A:0.45, C:0.22, G:0.07, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:10653201 original size:27 final size:27
Alignment explanation
Indices: 10653165--10653222 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
10653155 TTTGGTTAAA
10653165 AATTAACCGAATTAACCAAATTAACCG
1 AATTAACCGAATTAACCAAATTAACCG
* *
10653192 AATTACCCGAATTAACCTAATTAACCG
1 AATTAACCGAATTAACCAAATTAACCG
10653219 AATT
1 AATT
10653223 GAATCACTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.45, C:0.22, G:0.07, T:0.26
Consensus pattern (27 bp):
AATTAACCGAATTAACCAAATTAACCG
Found at i:10653364 original size:18 final size:18
Alignment explanation
Indices: 10653328--10653367 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
10653318 TTTTATGATT
**
10653328 GGTTGGGTTGGGTAATTG
1 GGTTGGGTTGAATAATTG
*
10653346 GGTTGGGTTGAATACTTG
1 GGTTGGGTTGAATAATTG
10653364 GGTT
1 GGTT
10653368 TAGATTGAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.12, C:0.03, G:0.45, T:0.40
Consensus pattern (18 bp):
GGTTGGGTTGAATAATTG
Found at i:10667617 original size:13 final size:13
Alignment explanation
Indices: 10667599--10667623 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10667589 CAATTGAGGG
10667599 GGGTTTGGGCCTT
1 GGGTTTGGGCCTT
10667612 GGGTTTGGGCCT
1 GGGTTTGGGCCT
10667624 CTTATGTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.16, G:0.48, T:0.36
Consensus pattern (13 bp):
GGGTTTGGGCCTT
Found at i:10667760 original size:9 final size:9
Alignment explanation
Indices: 10667738--10667771 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
10667728 TTATTCATTT
10667738 AATTAATT-
1 AATTAATTA
10667746 AATTAATTA
1 AATTAATTA
*
10667755 AATTAACTA
1 AATTAATTA
10667764 AATTAATT
1 AATTAATT
10667772 TCTCAATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (9 bp):
AATTAATTA
Found at i:10669238 original size:33 final size:35
Alignment explanation
Indices: 10669181--10669270 Score: 89
Period size: 34 Copynumber: 2.6 Consensus size: 35
10669171 AAACACGAGA
* *
10669181 AATTTTTTAAAAAACACGAGAATTT-TGGAAACAC-
1 AATTTTTTATAAAACACGAAAATTTAT-GAAACACT
*
10669215 AATTTTTTTTAAAA-ACGAAAATTTATGAAACACT
1 AATTTTTTATAAAACACGAAAATTTATGAAACACT
*
10669249 AGATTTTTTGT-AAACACCGAAA
1 A-ATTTTTTATAAAACA-CGAAA
10669271 TTTTTCAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
33 16 0.34
34 17 0.36
35 9 0.19
36 5 0.11
ACGTcount: A:0.46, C:0.11, G:0.10, T:0.33
Consensus pattern (35 bp):
AATTTTTTATAAAACACGAAAATTTATGAAACACT
Found at i:10669274 original size:18 final size:17
Alignment explanation
Indices: 10669253--10669297 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 17
10669243 AACACTAGAT
10669253 TTTTTGTAAACACCGAAA
1 TTTTT-TAAACACCGAAA
*
10669271 TTTTTCAAAACACCGAAA
1 TTTTT-TAAACACCGAAA
10669289 TTTTTTAAA
1 TTTTTTAAA
10669298 ACAAGAGGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 3 0.12
18 21 0.88
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.38
Consensus pattern (17 bp):
TTTTTTAAACACCGAAA
Found at i:10669298 original size:18 final size:18
Alignment explanation
Indices: 10669260--10669300 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
10669250 GATTTTTTGT
10669260 AAACACCGAAATTTTTCA
1 AAACACCGAAATTTTTCA
*
10669278 AAACACCGAAATTTTTTA
1 AAACACCGAAATTTTTCA
10669296 AAACA
1 AAACA
10669301 AGAGGATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.49, C:0.20, G:0.05, T:0.27
Consensus pattern (18 bp):
AAACACCGAAATTTTTCA
Found at i:10669328 original size:16 final size:16
Alignment explanation
Indices: 10669309--10669374 Score: 62
Period size: 16 Copynumber: 3.9 Consensus size: 16
10669299 CAAGAGGATT
10669309 TTTGAAATACGAAAAA
1 TTTGAAATACGAAAAA
*
10669325 TTTGAAA-ACAATAAAA
1 TTTGAAATACGA-AAAA
*
10669341 TTTTTGAAATACGAAAAT
1 --TTTGAAATACGAAAAA
*
10669359 TTTAGAAACACGAAAA
1 TTT-GAAATACGAAAA
10669375 TTTTTGAAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
15 3 0.07
16 14 0.34
17 11 0.27
18 10 0.24
19 3 0.07
ACGTcount: A:0.55, C:0.08, G:0.11, T:0.27
Consensus pattern (16 bp):
TTTGAAATACGAAAAA
Found at i:10669384 original size:17 final size:17
Alignment explanation
Indices: 10669192--10669415 Score: 132
Period size: 17 Copynumber: 12.9 Consensus size: 17
10669182 ATTTTTTAAA
* *
10669192 AAACACGAGAATTTTGG
1 AAACACGAAAATTTTTG
** *
10669209 AAACAC-AATTTTTTTT
1 AAACACGAAAATTTTTG
* *
10669225 AAAAACGAAAATTTATG
1 AAACACGAAAATTTTTG
* * *
10669242 AAACACTAGATTTTTTG
1 AAACACGAAAATTTTTG
*
10669259 TAAACACCG-AAATTTTTCA
1 -AAACA-CGAAAATTTTT-G
* *
10669278 AAACACCGAAATTTTTTA
1 AAACA-CGAAAATTTTTG
* **
10669296 AAACAAGAGGATTTTTG
1 AAACACGAAAATTTTTG
* *
10669313 AAATACGAAAA-ATTTG
1 AAACACGAAAATTTTTG
**
10669329 AAAACAATAAAATTTTTG
1 -AAACACGAAAATTTTTG
* *
10669347 AAATACGAAAATTTTAG
1 AAACACGAAAATTTTTG
10669364 AAACACGAAAATTTTTG
1 AAACACGAAAATTTTTG
*
10669381 AAACAC-AGAAGTTTTTAG
1 AAACACGA-AAATTTTT-G
10669399 AAAACACGAAAAATTTT
1 -AAACACG-AAAATTTT
10669416 NNNNNNNNNN
Statistics
Matches: 153, Mismatches: 42, Indels: 21
0.71 0.19 0.10
Matches are distributed among these distances:
16 15 0.10
17 87 0.57
18 30 0.20
19 14 0.09
20 6 0.04
21 1 0.01
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.31
Consensus pattern (17 bp):
AAACACGAAAATTTTTG
Found at i:10669780 original size:19 final size:19
Alignment explanation
Indices: 10669743--10669784 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
10669733 AGAACGAAAA
10669743 TTTCGAAACACGAGAATTTT
1 TTTCGAAACAC-AGAATTTT
10669763 TTTCGAAA-ACACGAATTTT
1 TTTCGAAACACA-GAATTTT
10669782 TTT
1 TTT
10669785 GAATATTTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 1 0.05
19 12 0.57
20 8 0.38
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.40
Consensus pattern (19 bp):
TTTCGAAACACAGAATTTT
Found at i:10669922 original size:5 final size:5
Alignment explanation
Indices: 10669912--10669944 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
10669902 AAATTATTTA
10669912 AAATT AAATT AAATT AAATT AAATT AAATT AAA
1 AAATT AAATT AAATT AAATT AAATT AAATT AAA
10669945 AACATAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (5 bp):
AAATT
Found at i:10670144 original size:18 final size:18
Alignment explanation
Indices: 10670104--10670146 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
10670094 TTAAAACCCC
10670104 TTTTTTCTTTTTTCCTCT
1 TTTTTTCTTTTTTCCTCT
* *
10670122 CTTTTTCTTTTTT-CTTT
1 TTTTTTCTTTTTTCCTCT
10670139 TTTTTTCT
1 TTTTTTCT
10670147 GGATTGAGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (18 bp):
TTTTTTCTTTTTTCCTCT
Found at i:10670264 original size:22 final size:21
Alignment explanation
Indices: 10670229--10670269 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
10670219 TCCGCTTGGT
10670229 CTGCTGCTGCGCTGGGCCTGGC
1 CTGCTGCTGCGCT-GGCCTGGC
10670251 CTGCTAGCTG-GCTGGCCTG
1 CTGCT-GCTGCGCTGGCCTG
10670270 CTGGGCTTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.33
22 8 0.44
23 4 0.22
ACGTcount: A:0.02, C:0.34, G:0.39, T:0.24
Consensus pattern (21 bp):
CTGCTGCTGCGCTGGCCTGGC
Found at i:10670476 original size:3 final size:3
Alignment explanation
Indices: 10670465--10670523 Score: 64
Period size: 3 Copynumber: 17.7 Consensus size: 3
10670455 TTTTTTTCCC
10670465 TCT TCCT TCT TCT TCT CTCTT TCTT TCTT TCT TCT TCT TCT TCCT TCT
1 TCT T-CT TCT TCT TCT -TC-T TC-T TC-T TCT TCT TCT TCT T-CT TCT
10670513 TCT TCT TCT TC
1 TCT TCT TCT TC
10670524 AAAACCGAGC
Statistics
Matches: 52, Mismatches: 0, Indels: 8
0.87 0.00 0.13
Matches are distributed among these distances:
3 33 0.63
4 18 0.35
5 1 0.02
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
TCT
Found at i:10670493 original size:25 final size:22
Alignment explanation
Indices: 10670465--10670523 Score: 66
Period size: 25 Copynumber: 2.5 Consensus size: 22
10670455 TTTTTTTCCC
10670465 TCTTCCTTCTTCTTCTCTCTTTCTT
1 TCTTCCTTCTTCTTCT-TC-TTC-T
*
10670490 TCTTTCTTCTTCTTCTTCCTTCT
1 TCTTCCTTCTTCTTCTT-CTTCT
10670513 TCTT-CTTCTTC
1 TCTTCCTTCTTC
10670524 AAAACCGAGC
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
22 7 0.22
23 5 0.16
24 4 0.12
25 16 0.50
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (22 bp):
TCTTCCTTCTTCTTCTTCTTCT
Found at i:10670512 original size:16 final size:16
Alignment explanation
Indices: 10670473--10670523 Score: 66
Period size: 16 Copynumber: 3.0 Consensus size: 16
10670463 CCTCTTCCTT
10670473 CTTCTTCTCTCTTTCTTTC
1 CTTCTTCT-TC-TTC-TTC
*
10670492 TTTCTTCTTCTTCTTC
1 CTTCTTCTTCTTCTTC
10670508 CTTCTTCTTCTTCTTC
1 CTTCTTCTTCTTCTTC
10670524 AAAACCGAGC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
16 18 0.60
17 3 0.10
18 2 0.07
19 7 0.23
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (16 bp):
CTTCTTCTTCTTCTTC
Found at i:10674181 original size:19 final size:19
Alignment explanation
Indices: 10674153--10674222 Score: 88
Period size: 19 Copynumber: 3.7 Consensus size: 19
10674143 TGATTTTTTC
*
10674153 TTTT-TGTTTTTTTTTGTT
1 TTTTCTGTTTTTTTCTGTT
*
10674171 TTGTCTGTTTTTTTCTGTT
1 TTTTCTGTTTTTTTCTGTT
* *
10674190 TTTTCTATTTTTTTCTATT
1 TTTTCTGTTTTTTTCTGTT
*
10674209 TTTTTTGTTTTTTT
1 TTTTCTGTTTTTTT
10674223 TAAGCATAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
18 3 0.07
19 41 0.93
ACGTcount: A:0.03, C:0.06, G:0.09, T:0.83
Consensus pattern (19 bp):
TTTTCTGTTTTTTTCTGTT
Found at i:10674223 original size:10 final size:10
Alignment explanation
Indices: 10674153--10674222 Score: 76
Period size: 9 Copynumber: 7.4 Consensus size: 10
10674143 TGATTTTTTC
10674153 TTTT-TGTTT
1 TTTTCTGTTT
*
10674162 TTTTTTG-TT
1 TTTTCTGTTT
*
10674171 TTGTCTGTTT
1 TTTTCTGTTT
10674181 TTTTCTG-TT
1 TTTTCTGTTT
*
10674190 TTTTCTATTT
1 TTTTCTGTTT
*
10674200 TTTTCTATTT
1 TTTTCTGTTT
10674210 TTTT-TGTTT
1 TTTTCTGTTT
10674219 TTTT
1 TTTT
10674223 TAAGCATAAT
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
9 27 0.51
10 26 0.49
ACGTcount: A:0.03, C:0.06, G:0.09, T:0.83
Consensus pattern (10 bp):
TTTTCTGTTT
Found at i:10679072 original size:22 final size:19
Alignment explanation
Indices: 10679027--10679066 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
10679017 ATGAAATGCC
10679027 TATGATGCATGATGAAAAA
1 TATGATGCATGATGAAAAA
10679046 TATGATGCATGATGAAAAA
1 TATGATGCATGATGAAAAA
10679065 TA
1 TA
10679067 AAATGAAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.47, C:0.05, G:0.20, T:0.28
Consensus pattern (19 bp):
TATGATGCATGATGAAAAA
Found at i:10680446 original size:18 final size:18
Alignment explanation
Indices: 10680341--10680677 Score: 205
Period size: 17 Copynumber: 18.9 Consensus size: 18
10680331 TGATCCGATT
*
10680341 AAAACACGAGAAATTTTTTAA
1 AAAACACGA-AAA-TTTTT-G
*
10680362 AAAACACGAGAA-TTTTG
1 AAAACACGAAAATTTTTG
* ** *
10680379 GAAACAC-AATTTTTTTT
1 AAAACACGAAAATTTTTG
*
10680396 AAAA-ACGAAAATTTATG
1 AAAACACGAAAATTTTTG
* **
10680413 -AAACACTAGATTTTTTTG
1 AAAACACGA-AAATTTTTG
*
10680431 AAAACACGAAAA-TTTTC
1 AAAACACGAAAATTTTTG
*
10680448 AAAACACCG-AAATTTTTT
1 AAAACA-CGAAAATTTTTG
**
10680466 AAAACACGAGGATTTTTG
1 AAAACACGAAAATTTTTG
* *
10680484 -AAATACGAAAA-ATTTG
1 AAAACACGAAAATTTTTG
*
10680500 AAAACAAGAAAATTTTTG
1 AAAACACGAAAATTTTTG
* *
10680518 -AAATACGAAAATTTTAG
1 AAAACACGAAAATTTTTG
10680535 -AAACACGAAAATTTTTG
1 AAAACACGAAAATTTTTG
*
10680552 -AAACAC-AGAAGTTTTTAG
1 AAAACACGA-AAATTTTT-G
*
10680570 AAAACACGAAAAATTTTG
1 AAAACACGAAAATTTTTG
*** **
10680588 AAAATTGGAATTTTTTTTG
1 AAAACACGAA-AATTTTTG
*
10680607 AAAACACGAGAATTTTTG
1 AAAACACGAAAATTTTTG
*
10680625 AAAAACATGAAAATTTTTG
1 -AAAACACGAAAATTTTTG
* ** *
10680644 -CAACACGGGAATTTTGG
1 AAAACACGAAAATTTTTG
*
10680661 AAAACACGAAAAATTTT
1 AAAACACGAAAATTTTT
10680678 CCGATTTTTT
Statistics
Matches: 236, Mismatches: 63, Indels: 37
0.70 0.19 0.11
Matches are distributed among these distances:
16 11 0.05
17 108 0.46
18 59 0.25
19 46 0.19
20 3 0.01
21 9 0.04
ACGTcount: A:0.47, C:0.10, G:0.13, T:0.30
Consensus pattern (18 bp):
AAAACACGAAAATTTTTG
Found at i:10680649 original size:36 final size:35
Alignment explanation
Indices: 10680609--10680677 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
10680599 TTTTTTTGAA
* *
10680609 AACACGAGAATTTTTGAAAAACATGAAAATTTTTGC
1 AACACGAGAA-TTTTGAAAAACACGAAAAATTTTGC
* *
10680645 AACACGGGAATTTTGGAAAACACGAAAAATTTT
1 AACACGAGAATTTTGAAAAACACGAAAAATTTT
10680678 CCGATTTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 20 0.69
36 9 0.31
ACGTcount: A:0.45, C:0.12, G:0.16, T:0.28
Consensus pattern (35 bp):
AACACGAGAATTTTGAAAAACACGAAAAATTTTGC
Found at i:10680877 original size:19 final size:19
Alignment explanation
Indices: 10680840--10680881 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
10680830 AGAACGAAAA
10680840 TTTCGAAACACGAGAATTTT
1 TTTCGAAACAC-AGAATTTT
10680860 TTTCGAAA-ACACGAATTTT
1 TTTCGAAACACA-GAATTTT
10680879 TTT
1 TTT
10680882 GAATATTTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 1 0.05
19 12 0.57
20 8 0.38
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.40
Consensus pattern (19 bp):
TTTCGAAACACAGAATTTT
Found at i:10681032 original size:11 final size:11
Alignment explanation
Indices: 10681008--10681042 Score: 52
Period size: 11 Copynumber: 3.0 Consensus size: 11
10680998 AAAAAATTAT
10681008 TTAAAATTTAAAA
1 TTAAAA-TT-AAA
10681021 TTAAAATTAAA
1 TTAAAATTAAA
10681032 TTAAAATTAAA
1 TTAAAATTAAA
10681043 ATTTAAAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 14 0.64
12 2 0.09
13 6 0.27
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
TTAAAATTAAA
Found at i:10681034 original size:5 final size:6
Alignment explanation
Indices: 10681008--10681050 Score: 61
Period size: 6 Copynumber: 7.0 Consensus size: 6
10680998 AAAAAATTAT
10681008 TTAAAA TTTAAAA TTAAAA TT-AAA TTAAAA TTAAAA TTTAAAA
1 TTAAAA -TTAAAA TTAAAA TTAAAA TTAAAA TTAAAA -TTAAAA
10681051 ACATAAATAC
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 5 0.15
6 17 0.50
7 12 0.35
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (6 bp):
TTAAAA
Found at i:10681255 original size:18 final size:18
Alignment explanation
Indices: 10681215--10681254 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
10681205 TTAAAACCCC
10681215 TTTTTTCTTTTTTCCTCT
1 TTTTTTCTTTTTTCCTCT
*
10681233 CTTTTTCTTTTTT-CT-T
1 TTTTTTCTTTTTTCCTCT
10681249 TTTTTT
1 TTTTTT
10681255 TAGGATTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 2 0.10
18 12 0.60
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTTTCTTTTTTCCTCT
Found at i:10681580 original size:3 final size:3
Alignment explanation
Indices: 10681569--10681630 Score: 65
Period size: 3 Copynumber: 19.7 Consensus size: 3
10681559 TTTTTTTCCC
10681569 TCT TCCT TCT TCT T-T TC- TCTT TCTT TCTT TCT TCT TCT TCT TCT TCCT
1 TCT T-CT TCT TCT TCT TCT TC-T TC-T TC-T TCT TCT TCT TCT TCT T-CT
10681617 TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TC
10681631 AAAACCGAGC
Statistics
Matches: 54, Mismatches: 0, Indels: 10
0.84 0.00 0.16
Matches are distributed among these distances:
2 4 0.07
3 34 0.63
4 16 0.30
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:10681582 original size:22 final size:21
Alignment explanation
Indices: 10681556--10681629 Score: 67
Period size: 22 Copynumber: 3.2 Consensus size: 21
10681546 TATTTTTTTT
*
10681556 TTCTTTTTTTCCCTCTTCCTTC
1 TTCTTTTTTTCCTTCTT-CTTC
*
10681578 TTCTTTTCTCTTTCTTTCTTTCTTC
1 TTC-TTT-T-TTTCCTTC-TTCTTC
*
10681603 TTCTTCTTCTTCCTTCTTCTTC
1 TTCTT-TTTTTCCTTCTTCTTC
10681625 TTCTT
1 TTCTT
10681630 CAAAACCGAG
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
22 14 0.33
23 9 0.21
24 4 0.09
25 14 0.33
26 2 0.05
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (21 bp):
TTCTTTTTTTCCTTCTTCTTC
Found at i:10681584 original size:19 final size:19
Alignment explanation
Indices: 10681556--10681623 Score: 57
Period size: 19 Copynumber: 3.4 Consensus size: 19
10681546 TATTTTTTTT
*
10681556 TTCTTTTTTTCCCTCTTCC
1 TTCTTCTTTTCCCTCTTCC
* *
10681575 TTCTTCTTTTCTCT-TTCT
1 TTCTTCTTTTCCCTCTTCC
*
10681593 TTCTTTCTTCTTCTTCTTCTTCC
1 TTC-TTCTT-TTC--CCTCTTCC
10681616 TTCTTCTT
1 TTCTTCTT
10681624 CTTCTTCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
18 6 0.16
19 17 0.45
20 3 0.08
22 6 0.16
23 6 0.16
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (19 bp):
TTCTTCTTTTCCCTCTTCC
Found at i:10681630 original size:22 final size:21
Alignment explanation
Indices: 10681568--10681630 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 21
10681558 CTTTTTTTCC
10681568 CTCTTCCTTCTTCTT-TTC-T
1 CTCTTCCTTCTTCTTCTTCTT
*
10681587 CT-TTCTTTCTTTCTTCTTCTT
1 CTCTTCCTTC-TTCTTCTTCTT
10681608 CTTCTTCCTTCTTCTTCTTCTT
1 C-TCTTCCTTCTTCTTCTTCTT
10681630 C
1 C
10681631 AAAACCGAGC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
18 6 0.16
19 7 0.19
20 3 0.08
21 2 0.05
22 13 0.35
23 6 0.16
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (21 bp):
CTCTTCCTTCTTCTTCTTCTT
Found at i:10682032 original size:29 final size:28
Alignment explanation
Indices: 10681991--10682070 Score: 133
Period size: 29 Copynumber: 2.8 Consensus size: 28
10681981 GAATTTTAAG
*
10681991 AAAATTTAGGGGTCAAAATGTAATTTCA
1 AAAAGTTAGGGGTCAAAATGTAATTTCA
10682019 AAAAGTTAGTGGGTCAAAATGTAATTTCA
1 AAAAGTTAG-GGGTCAAAATGTAATTTCA
10682048 AAAAGTTTAGGGGTCAAAATGTA
1 AAAAG-TTAGGGGTCAAAATGTA
10682071 TTTTTTGATT
Statistics
Matches: 49, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
28 8 0.16
29 37 0.76
30 4 0.08
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.30
Consensus pattern (28 bp):
AAAAGTTAGGGGTCAAAATGTAATTTCA
Found at i:10682862 original size:12 final size:13
Alignment explanation
Indices: 10682830--10682867 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
10682820 CAAAGAAAGG
*
10682830 ATAGAAAAAGAGA
1 ATAGAAACAGAGA
10682843 ATAGAAACAGAGA
1 ATAGAAACAGAGA
10682856 A-AGAAACAGAGA
1 ATAGAAACAGAGA
10682868 GCAAAACGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 11 0.46
13 13 0.54
ACGTcount: A:0.66, C:0.05, G:0.24, T:0.05
Consensus pattern (13 bp):
ATAGAAACAGAGA
Found at i:10684139 original size:39 final size:38
Alignment explanation
Indices: 10684019--10684152 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 38
10684009 GACCTTGAGT
* *
10684019 CGATGAGACACTGGGTGTCATACTGTTACTTCGAA-TAGATT
1 CGATGAGACACTGGGTGTCA-ACT-TTGCTTCGAACT--ATC
** ** * *
10684060 CGATGAGGTACTGGGTACCAAC-TTGCTTCG-GCTTTGC
1 CGATGAGACACTGGGTGTCAACTTTGCTTCGAACTAT-C
10684097 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGACACTGGGTGTCAACT-TTGCTTCGAACTATC
*
10684136 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
10684153 CCATTCTGGT
Statistics
Matches: 73, Mismatches: 15, Indels: 12
0.73 0.15 0.12
Matches are distributed among these distances:
36 1 0.01
37 18 0.25
38 8 0.11
39 25 0.34
40 5 0.07
41 16 0.22
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (38 bp):
CGATGAGACACTGGGTGTCAACTTTGCTTCGAACTATC
Found at i:10685407 original size:25 final size:24
Alignment explanation
Indices: 10685379--10685573 Score: 153
Period size: 25 Copynumber: 8.4 Consensus size: 24
10685369 GGAGTTTAGC
**
10685379 GTGCTCTCTGATTATTAGCACATTG
1 GTGCTCTCTGA-TATTAGCACATCA
10685404 GTGCTCTCTGATTATTAGCACATCA
1 GTGCTCTCTGA-TATTAGCACATCA
*
10685429 GTGCTCTCTG-T-TTAGCACATCT
1 GTGCTCTCTGATATTAGCACATCA
*
10685451 GTGCTCTCTGATATTTAGCACGTCA
1 GTGCTCTCTGATA-TTAGCACATCA
10685476 GTGCTCTCTGAATATTAG--CA-C-
1 GTGCTCTCTG-ATATTAGCACATCA
* * *
10685497 --GCTCTCTGATCACTAGCACGTTA
1 GTGCTCTCTGAT-ATTAGCACATCA
* **
10685520 GTGCTCTCCG-T-TTAGCACATTT
1 GTGCTCTCTGATATTAGCACATCA
* *
10685542 GTGCTCTCTG-TA-TAGCACTTTA
1 GTGCTCTCTGATATTAGCACATCA
10685564 GTGCTCTCTG
1 GTGCTCTCTG
10685574 TTTAATAGTG
Statistics
Matches: 142, Mismatches: 16, Indels: 27
0.77 0.09 0.15
Matches are distributed among these distances:
18 2 0.01
19 12 0.08
21 1 0.01
22 57 0.40
23 3 0.02
24 1 0.01
25 63 0.44
26 3 0.02
ACGTcount: A:0.18, C:0.25, G:0.19, T:0.37
Consensus pattern (24 bp):
GTGCTCTCTGATATTAGCACATCA
Found at i:10685513 original size:19 final size:19
Alignment explanation
Indices: 10685478--10685516 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
10685468 GCACGTCAGT
*
10685478 GCTCTCTGAATATTAGCAC
1 GCTCTCTGAATACTAGCAC
10685497 GCTCTCTG-ATCACTAGCAC
1 GCTCTCTGAAT-ACTAGCAC
10685516 G
1 G
10685517 TTAGTGCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (19 bp):
GCTCTCTGAATACTAGCAC
Found at i:10685533 original size:91 final size:88
Alignment explanation
Indices: 10685406--10685573 Score: 237
Period size: 91 Copynumber: 1.9 Consensus size: 88
10685396 GCACATTGGT
* * *
10685406 GCTCTCTGATTATTAGCACATCAGTGCTCTCTGTTTAGCACATCTGTGCTCTCTGATATTTAGCA
1 GCTCTCTGATCACTAGCACATCAGTGCTCTCCGTTTAGCACATCTGTGCTCTCTG-TA--TAGCA
10685471 CGTCAGTGCTCTCTGAATATTAGCAC
63 CGTCAGTGCTCTCTGAATATTAGCAC
* * * *
10685497 GCTCTCTGATCACTAGCACGTTAGTGCTCTCCGTTTAGCACATTTGTGCTCTCTGTATAGCACTT
1 GCTCTCTGATCACTAGCACATCAGTGCTCTCCGTTTAGCACATCTGTGCTCTCTGTATAGCACGT
*
10685562 TAGTGCTCTCTG
66 CAGTGCTCTCTG
10685574 TTTAATAGTG
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
88 18 0.26
90 2 0.03
91 49 0.71
ACGTcount: A:0.18, C:0.26, G:0.18, T:0.37
Consensus pattern (88 bp):
GCTCTCTGATCACTAGCACATCAGTGCTCTCCGTTTAGCACATCTGTGCTCTCTGTATAGCACGT
CAGTGCTCTCTGAATATTAGCAC
Found at i:10686546 original size:13 final size:13
Alignment explanation
Indices: 10686528--10686555 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
10686518 CGATCTCTTC
10686528 TGGGTATTCTATA
1 TGGGTATTCTATA
10686541 TGGGTATTCTATA
1 TGGGTATTCTATA
10686554 TG
1 TG
10686556 TTCTTTTATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.25, T:0.46
Consensus pattern (13 bp):
TGGGTATTCTATA
Done.