Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62769430
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1067035 characters in sequence are not A, C, G, or T
File 38 of 206
Found at i:10928123 original size:21 final size:21
Alignment explanation
Indices: 10928058--10928150 Score: 96
Period size: 21 Copynumber: 4.3 Consensus size: 21
10928048 CAACAACTTA
*
10928058 AAGCAGAGGCAGCAACGAGAG
1 AAGCAGAGGCAGCAGCGAGAG
* *
10928079 AAACAGAGGCCGCAGCGAGAG
1 AAGCAGAGGCAGCAGCGAGAG
* *
10928100 AAGCAGAAGCTGCAGCGAGAG
1 AAGCAGAGGCAGCAGCGAGAG
* *
10928121 AAGCAGCGAGAGAAGCAGCGATAG
1 AAGCA--GAG-GCAGCAGCGAGAG
10928145 AAGCAG
1 AAGCAG
10928151 CGATAGAAGA
Statistics
Matches: 59, Mismatches: 10, Indels: 5
0.80 0.14 0.07
Matches are distributed among these distances:
21 41 0.69
22 1 0.02
23 2 0.03
24 15 0.25
ACGTcount: A:0.41, C:0.19, G:0.38, T:0.02
Consensus pattern (21 bp):
AAGCAGAGGCAGCAGCGAGAG
Found at i:10928128 original size:12 final size:12
Alignment explanation
Indices: 10928090--10928159 Score: 83
Period size: 12 Copynumber: 6.1 Consensus size: 12
10928080 AACAGAGGCC
10928090 GCAGCGAGAGAA
1 GCAGCGAGAGAA
**
10928102 GCA--GA-AGCT
1 GCAGCGAGAGAA
10928111 GCAGCGAGAGAA
1 GCAGCGAGAGAA
10928123 GCAGCGAGAGAA
1 GCAGCGAGAGAA
*
10928135 GCAGCGATAGAA
1 GCAGCGAGAGAA
*
10928147 GCAGCGATAGAA
1 GCAGCGAGAGAA
10928159 G
1 G
10928160 AAGAGGTTCA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
9 5 0.10
10 2 0.04
11 2 0.04
12 41 0.82
ACGTcount: A:0.40, C:0.17, G:0.39, T:0.04
Consensus pattern (12 bp):
GCAGCGAGAGAA
Found at i:10928831 original size:85 final size:84
Alignment explanation
Indices: 10928627--10928982 Score: 428
Period size: 85 Copynumber: 4.2 Consensus size: 84
10928617 GTTTTTAAAC
* * * * ** *
10928627 AAGCGCCGCTATAGAACATTA-CTTTTAGAGGCGTTTTCTTTCAAAGTGCCGCTAAAGAACATGA
1 AAGCGCCGCTAAAGAACATGATC-TTTAGCGGCG-TTTATTTCTTAGCGCCGCTAAAGAACATGA
* *
10928691 TCTTTAGCGGCGTTT-TTGTCCT
64 TCTTTAGTGGCATTTATT-T-CT
*
10928713 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCCTTAGCGCCGCTAAAGAACAAGAT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTT-CTTAGCGCCGCTAAAGAACATGAT
10928778 CTTTAGTGGCATTTATTTCT
65 CTTTAGTGGCATTTATTTCT
* * * * *
10928798 AAGCGCCGCTAAAGAACATGCTCTTTAGTGGCGTTTATTTTTTAGCGCCGTTAAATAACATGATC
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCTTAGCGCCGCTAAAGAACATGATC
* *
10928863 TTTAGTGGCGTTTATTTTTT
66 TTTAGTGGCATTTA-TTTCT
* * *
10928883 TAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTCTTTCTAAGCGCCGCTAAAGAACATGATC
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCTTAGCGCCGCTAAAGAACATGATC
*
10928948 TTTAGTGGCATTTTTTTCTGT
66 TTTAGTGGCATTTATTTC--T
*
10928969 AAGCGCCGCAAAAG
1 AAGCGCCGCTAAAG
10928983 TTTACGACGT
Statistics
Matches: 233, Mismatches: 31, Indels: 12
0.84 0.11 0.04
Matches are distributed among these distances:
84 37 0.16
85 119 0.51
86 74 0.32
87 3 0.01
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (84 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCTTAGCGCCGCTAAAGAACATGATC
TTTAGTGGCATTTATTTCT
Found at i:10928966 original size:42 final size:42
Alignment explanation
Indices: 10928627--10928982 Score: 419
Period size: 43 Copynumber: 8.3 Consensus size: 42
10928617 GTTTTTAAAC
* * * *
10928627 AAGCGCCGCTATAGAACATTA-CTTTTAGAGGCGTTTTCTTTCA
1 AAGCGCCGCTAAAGAACATGATC-TTTAGTGGCGTTTT-TTTCT
* * *
10928670 AAGTGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTGTCCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTT-TTCT
* *
10928713 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTT-TTTTCT
* * * *
10928756 TAGCGCCGCTAAAGAACAAGATCTTTAGTGGCATTTATTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTTCT
*
10928798 AAGCGCCGCTAAAGAACATGCTCTTTAGTGGCGTTTATTTT-T
1 AAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTT-TTTTCT
* * * *
10928840 TAGCGCCGTTAAATAACATGATCTTTAGTGGCGTTTATTTTTT
1 AAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTT-TTTTCT
* * *
10928883 TAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTCTTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTTCT
*
10928925 AAGCGCCGCTAAAGAACATGATCTTTAGTGGCATTTTTTTCTGT
1 AAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTTC--T
*
10928969 AAGCGCCGCAAAAG
1 AAGCGCCGCTAAAG
10928983 TTTACGACGT
Statistics
Matches: 274, Mismatches: 32, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
42 116 0.42
43 141 0.51
44 17 0.06
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (42 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTTCT
Found at i:10936146 original size:2 final size:2
Alignment explanation
Indices: 10936139--10936181 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
10936129 AATCTTAAGT
*
10936139 AC AC AC AC AC CC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
10936181 A
1 A
10936182 TATATATATA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.51, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:10938871 original size:32 final size:34
Alignment explanation
Indices: 10938834--10938906 Score: 105
Period size: 34 Copynumber: 2.2 Consensus size: 34
10938824 AACTCTCACT
*
10938834 CTTTTTCTT-TCTTTTT-TCTCAACACTCACTTA
1 CTTTTTCTTCTCTTTTTCTCTCAACACTCACTCA
* *
10938866 CTTTTTCTTCTTTTTTTCTCTCAACATTCACTCA
1 CTTTTTCTTCTCTTTTTCTCTCAACACTCACTCA
10938900 CTTTTTC
1 CTTTTTC
10938907 AGTTGCTATT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
32 9 0.25
33 6 0.17
34 21 0.58
ACGTcount: A:0.14, C:0.29, G:0.00, T:0.58
Consensus pattern (34 bp):
CTTTTTCTTCTCTTTTTCTCTCAACACTCACTCA
Found at i:10944998 original size:22 final size:22
Alignment explanation
Indices: 10944970--10945122 Score: 225
Period size: 22 Copynumber: 7.0 Consensus size: 22
10944960 TGTTGATAGT
*
10944970 ACGTACTAAGCTCTCATGTTTC
1 ACGTACTAAGCTCTCATGTTTA
10944992 ACGTACTAAGCTCTCATGTTTA
1 ACGTACTAAGCTCTCATGTTTA
10945014 ACGTACTAAGCTCTCATGTTTA
1 ACGTACTAAGCTCTCATGTTTA
* * * **
10945036 ACGAACTAAACCCTCATGGCTA
1 ACGTACTAAGCTCTCATGTTTA
**
10945058 ACGTACTAAGCTCTCATGGCTA
1 ACGTACTAAGCTCTCATGTTTA
*
10945080 ACGTACTAAGCTCTCATGTTTC
1 ACGTACTAAGCTCTCATGTTTA
10945102 ACGTACTAAGCTCTCATGTTT
1 ACGTACTAAGCTCTCATGTTT
10945123 GAACAATAAA
Statistics
Matches: 119, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 119 1.00
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (22 bp):
ACGTACTAAGCTCTCATGTTTA
Found at i:10945309 original size:2 final size:2
Alignment explanation
Indices: 10945302--10945357 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
10945292 ATGATAAGCC
10945302 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10945344 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
10945358 CAAACACAAG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10946029 original size:25 final size:26
Alignment explanation
Indices: 10945979--10946029 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
10945969 GCCCATAGAA
*
10945979 CATGTAAACGGGAAGCTCTTTCGAGC
1 CATGTAAACGGGAAGCTCTGTCGAGC
10946005 CATGT-AACGGGAAGCTCATGT-GAGC
1 CATGTAAACGGGAAGCTC-TGTCGAGC
10946030 TGTATAACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (26 bp):
CATGTAAACGGGAAGCTCTGTCGAGC
Found at i:10946150 original size:25 final size:25
Alignment explanation
Indices: 10946118--10946195 Score: 86
Period size: 25 Copynumber: 3.1 Consensus size: 25
10946108 AATCAAAAAA
*
10946118 CTCATGAGAGCTAAATATCGGGAA-G
1 CTCATGAGAGCTAAATAAC-GGAATG
* * *
10946143 CTCGTGAGAGCCATATAACGGAATG
1 CTCATGAGAGCTAAATAACGGAATG
* *
10946168 CTCATAAGAGCTAAATAATGGAATG
1 CTCATGAGAGCTAAATAACGGAATG
10946193 CTC
1 CTC
10946196 TTGCGAACTG
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
24 4 0.09
25 39 0.91
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (25 bp):
CTCATGAGAGCTAAATAACGGAATG
Found at i:10960945 original size:21 final size:21
Alignment explanation
Indices: 10960912--10960952 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
10960902 TCAAAGCTGC
** *
10960912 TAAAAGAGTCTTAAGGTATGT
1 TAAAAGAACCTTAAGCTATGT
10960933 TAAAAGAACCTTAAGCTATG
1 TAAAAGAACCTTAAGCTATG
10960953 GAGGGAAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (21 bp):
TAAAAGAACCTTAAGCTATGT
Found at i:10961518 original size:28 final size:28
Alignment explanation
Indices: 10961482--10961549 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
10961472 AGTTGTCAAC
* * *
10961482 AATGCAGCAGCGTGTAAATGTTCACAAG
1 AATGCAGCAGCATGCAAATGTCCACAAG
* * *
10961510 AATGGAGCAGCATGCACATGTCCACTAG
1 AATGCAGCAGCATGCAAATGTCCACAAG
10961538 AATGCAGCAGCA
1 AATGCAGCAGCA
10961550 AGCTATTGTC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (28 bp):
AATGCAGCAGCATGCAAATGTCCACAAG
Found at i:10965099 original size:6 final size:6
Alignment explanation
Indices: 10965090--10965123 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
10965080 AACCTTGAAG
10965090 CCAAAC CCAAAC CCGAAAC GCCAAAC CCAAAC CC
1 CCAAAC CCAAAC CC-AAAC -CCAAAC CCAAAC CC
10965124 TCAACCCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 16 0.62
7 8 0.31
8 2 0.08
ACGTcount: A:0.44, C:0.50, G:0.06, T:0.00
Consensus pattern (6 bp):
CCAAAC
Found at i:10965115 original size:14 final size:12
Alignment explanation
Indices: 10965090--10965123 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
10965080 AACCTTGAAG
10965090 CCAAACCCAAAC
1 CCAAACCCAAAC
10965102 CCGAAACGCCAAAC
1 CC-AAAC-CCAAAC
10965116 CCAAACCC
1 CCAAACCC
10965124 TCAACCCTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 4 0.20
13 8 0.40
14 8 0.40
ACGTcount: A:0.44, C:0.50, G:0.06, T:0.00
Consensus pattern (12 bp):
CCAAACCCAAAC
Found at i:10965301 original size:26 final size:25
Alignment explanation
Indices: 10965255--10965308 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 25
10965245 TTGGTTGCAC
*
10965255 AAAAATAAAAAAATATTAATTTATGA
1 AAAAATAAAAAAATATAAATTTAT-A
*
10965281 AAAAATAAAATAAT-TAAAATTTATA
1 AAAAATAAAAAAATAT-AAATTTATA
10965306 AAA
1 AAA
10965309 GAAGAAAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.30
Consensus pattern (25 bp):
AAAAATAAAAAAATATAAATTTATA
Found at i:10977652 original size:18 final size:18
Alignment explanation
Indices: 10977629--10977663 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
10977619 CCCAGCCGTC
10977629 TTCTCATTTCTTTCTCAT
1 TTCTCATTTCTTTCTCAT
10977647 TTCTCATTTCTTTCTCA
1 TTCTCATTTCTTTCTCA
10977664 CGTCTGAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.29, G:0.00, T:0.60
Consensus pattern (18 bp):
TTCTCATTTCTTTCTCAT
Found at i:10978145 original size:61 final size:61
Alignment explanation
Indices: 10978072--10978265 Score: 191
Period size: 61 Copynumber: 3.2 Consensus size: 61
10978062 TTATACTATT
*
10978072 ATATATTATAATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATC
1 ATATATTATAATTTAAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATC
* * * * * * * *
10978133 ATATATTTTAATTAAAATATATTTA-ATAATAATTATGTTAA-ATT-A-TATTTTA-TAGTATC
1 ATATATTATAATTTAAGTAAATTCATATAAGAA-TAT-TTAATATTAAGAATTTTATTA-AATC
* * * * *
10978192 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATAATTTAAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATC
*
10978253 ATATATTTTAATT
1 ATATATTATAATT
10978266 AAAATATATT
Statistics
Matches: 101, Mismatches: 24, Indels: 16
0.72 0.17 0.11
Matches are distributed among these distances:
58 4 0.04
59 33 0.33
60 14 0.14
61 44 0.44
62 6 0.06
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (61 bp):
ATATATTATAATTTAAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATC
Found at i:10978257 original size:120 final size:120
Alignment explanation
Indices: 10978043--10978296 Score: 427
Period size: 120 Copynumber: 2.1 Consensus size: 120
10978033 AGTGAATCCC
* * *
10978043 AATTATGTTATATTATATTTTATACTATTATATATTATAATTTTAGTAAATTCATATAAGAATAT
1 AATTATGTTAAATTATATTTTATACTATCATATATTATAATTTGAGTAAATTCATATAAGAATAT
*
10978108 TTAATATTAAGAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAAT
66 TGAATATTAAGAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAAT
* *
10978163 AATTATGTTAAATTATATTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATAT
1 AATTATGTTAAATTATATTTTATACTATCATATATTATAATTTGAGTAAATTCATATAAGAATAT
* *
10978228 TGATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAT
66 TGAATATTAAGAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAAT
10978283 AATTATGTTTAAAT
1 AATTATG-TTAAAT
10978297 ATGATTAAAT
Statistics
Matches: 125, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
120 119 0.95
121 6 0.05
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (120 bp):
AATTATGTTAAATTATATTTTATACTATCATATATTATAATTTGAGTAAATTCATATAAGAATAT
TGAATATTAAGAATTTTATTAAATCATATATTTTAATTAAAATATATTTAATAAT
Found at i:10978268 original size:18 final size:17
Alignment explanation
Indices: 10978240--10978274 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
10978230 ATTATTAAGA
*
10978240 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
10978257 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
10978275 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:10978503 original size:44 final size:45
Alignment explanation
Indices: 10978438--10978528 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
10978428 ACCTCTATTC
* * *
10978438 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
10978482 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
10978527 CA
1 CA
10978529 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:10978530 original size:16 final size:16
Alignment explanation
Indices: 10978509--10978577 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
10978499 GATTAGCTAT
10978509 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
10978525 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
10978542 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
10978558 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
10978574 TACA
1 TACA
10978578 GCGAACTAAA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:10978551 original size:33 final size:32
Alignment explanation
Indices: 10978509--10978577 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
10978499 GATTAGCTAT
10978509 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
10978542 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
10978574 TACA
1 TACA
10978578 GCGAACTAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 8 0.22
33 28 0.78
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:10979944 original size:26 final size:26
Alignment explanation
Indices: 10979910--10979959 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
10979900 GACATATGGC
10979910 AAAAAATTATAAAAAAGTA-TAAATCA
1 AAAAAATTATAAAAAA-TATTAAATCA
10979936 AAAAAATTATAAAAAATATTAAAT
1 AAAAAATTATAAAAAATATTAAAT
10979960 ATTAAGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (26 bp):
AAAAAATTATAAAAAATATTAAATCA
Found at i:10979963 original size:19 final size:19
Alignment explanation
Indices: 10979941--10980006 Score: 57
Period size: 19 Copynumber: 3.5 Consensus size: 19
10979931 AATCAAAAAA
10979941 ATTATAAAAAATATTAAAT
1 ATTATAAAAAATATTAAAT
*
10979960 ATTA-AGAAAAGTATTTAAA-
1 ATTATA-AAAAATA-TTAAAT
**
10979979 ATTATTTAAAATA-TAAAT
1 ATTATAAAAAATATTAAAT
*
10979997 TTTATAAAAA
1 ATTATAAAAA
10980007 TTATAAATTA
Statistics
Matches: 36, Mismatches: 7, Indels: 9
0.69 0.13 0.17
Matches are distributed among these distances:
17 4 0.11
18 8 0.22
19 19 0.53
20 5 0.14
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (19 bp):
ATTATAAAAAATATTAAAT
Found at i:10980289 original size:9 final size:9
Alignment explanation
Indices: 10980275--10980410 Score: 70
Period size: 9 Copynumber: 15.3 Consensus size: 9
10980265 TAAAATTTTA
10980275 TATATATTT
1 TATATATTT
10980284 TATATATTT
1 TATATATTT
10980293 CTATATATTT
1 -TATATATTT
10980303 TATAT-TTT
1 TATATATTT
* *
10980311 TTTACAATTT
1 TATA-TATTT
*
10980321 TTTATATTTT
1 TATATA-TTT
* *
10980331 TTTACAATTT
1 TATA-TATTT
10980341 TATACT-TTT
1 TATA-TATTT
*
10980350 TATAAATTT
1 TATATATTT
*
10980359 TAAATATTT
1 TATATATTT
* *
10980368 TTTATAGTT
1 TATATATTT
10980377 T-T-T-TTT
1 TATATATTT
10980383 T-TA-ATTT
1 TATATATTT
* *
10980390 AATATTTTT
1 TATATATTT
*
10980399 TATAAATTT
1 TATATATTT
10980408 TAT
1 TAT
10980411 TGATTTTTTT
Statistics
Matches: 99, Mismatches: 18, Indels: 20
0.72 0.13 0.15
Matches are distributed among these distances:
6 4 0.04
7 4 0.04
8 9 0.09
9 51 0.52
10 30 0.30
11 1 0.01
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (9 bp):
TATATATTT
Found at i:10980325 original size:20 final size:20
Alignment explanation
Indices: 10980300--10980370 Score: 85
Period size: 20 Copynumber: 3.6 Consensus size: 20
10980290 TTTCTATATA
10980300 TTTTATATTTTTTTACAATT
1 TTTTATATTTTTTTACAATT
10980320 TTTTATATTTTTTTACAA--
1 TTTTATATTTTTTTACAATT
*
10980338 TTTTATACTTTTTATA-AATT
1 TTTTATA-TTTTTTTACAATT
**
10980358 TTAAATATTTTTT
1 TTTTATATTTTTT
10980371 ATAGTTTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
18 9 0.20
19 12 0.27
20 23 0.52
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTATATTTTTTTACAATT
Found at i:10980371 original size:20 final size:19
Alignment explanation
Indices: 10980269--10980419 Score: 78
Period size: 19 Copynumber: 8.4 Consensus size: 19
10980259 ACTTTATAAA
* *
10980269 ATTTTATATATATTTT-AT
1 ATTTTTTATAAATTTTAAT
* *
10980287 ATATTTCTATATATTTT-AT
1 AT-TTTTTATAAATTTTAAT
*
10980306 ATTTTTT-TACAATTTTTTAT
1 ATTTTTTATA-AA-TTTTAAT
10980326 ATTTTTT-TACAATTTT-AT
1 ATTTTTTATA-AATTTTAAT
*
10980344 ACTTTTTATAAATTTTAAAT
1 ATTTTTTATAAATTTT-AAT
*
10980364 ATTTTTTAT--A-GTT--T
1 ATTTTTTATAAATTTTAAT
10980378 -TTTTTT-T-AA-TTTAAT
1 ATTTTTTATAAATTTTAAT
*
10980393 ATTTTTTATAAATTTTATT
1 ATTTTTTATAAATTTTAAT
10980412 GATTTTTT
1 -ATTTTTT
10980420 TTATTTTTTA
Statistics
Matches: 110, Mismatches: 8, Indels: 28
0.75 0.05 0.19
Matches are distributed among these distances:
12 1 0.01
13 9 0.08
14 1 0.01
15 1 0.01
16 6 0.05
17 5 0.05
18 24 0.22
19 32 0.29
20 31 0.28
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (19 bp):
ATTTTTTATAAATTTTAAT
Found at i:10980380 original size:49 final size:47
Alignment explanation
Indices: 10980317--10980428 Score: 136
Period size: 49 Copynumber: 2.3 Consensus size: 47
10980307 TTTTTTTACA
*
10980317 ATTTTTTATATTTTTTTACAATTTTATACTTTTTATAAATTTTAAAT
1 ATTTTTTATATTTTTTTACAATTTAATACTTTTTATAAATTTTAAAT
** * *
10980364 ATTTTTTATAGTTTTTTTTTTAATTTAATATTTTTTATAAATTTT-ATT
1 ATTTTTTATA--TTTTTTTACAATTTAATACTTTTTATAAATTTTAAAT
*
10980412 GATTTTTTTTATTTTTT
1 -ATTTTTTATATTTTTT
10980429 ATCATTTTTT
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
47 16 0.29
48 2 0.04
49 38 0.68
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.70
Consensus pattern (47 bp):
ATTTTTTATATTTTTTTACAATTTAATACTTTTTATAAATTTTAAAT
Found at i:10982583 original size:30 final size:30
Alignment explanation
Indices: 10982547--10982637 Score: 155
Period size: 30 Copynumber: 3.0 Consensus size: 30
10982537 TTTCCTTTAC
* *
10982547 ATAACAAACAAACTTATTTTTATGACTTAT
1 ATAACAAACAAACTTACTTTTATGACTCAT
10982577 ATAACAAACAAACTTACTTTTATGACTCAT
1 ATAACAAACAAACTTACTTTTATGACTCAT
*
10982607 ATAACAAATAAACTTACTTTTATGACTCAT
1 ATAACAAACAAACTTACTTTTATGACTCAT
10982637 A
1 A
10982638 CAAAATAGTG
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 58 1.00
ACGTcount: A:0.44, C:0.16, G:0.03, T:0.36
Consensus pattern (30 bp):
ATAACAAACAAACTTACTTTTATGACTCAT
Found at i:10984513 original size:50 final size:50
Alignment explanation
Indices: 10984411--10984695 Score: 286
Period size: 50 Copynumber: 5.6 Consensus size: 50
10984401 GGGAATGAGA
* *
10984411 TCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCATTGAGTTTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATGAGAGG
** *
10984467 TGTCATGTAAGACCATGTCTAGGACATGGCATTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
*
10984517 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
** * * * **
10984567 TCCCCCGTAAGATCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
** * * * * * **
10984617 TCCCATGTAAGACCACATCTGGGATATGGTATTGGCA--GTACAAGAAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAGAGG
*
10984666 TCCCATGTAAGACCATGTTTGGGACATGGC
1 TCCCATGTAAGACCATGTCTGGGACATGGC
10984696 TTTTGCATGT
Statistics
Matches: 193, Mismatches: 35, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
48 1 0.01
49 30 0.16
50 125 0.65
53 3 0.02
55 1 0.01
56 33 0.17
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:10991118 original size:12 final size:12
Alignment explanation
Indices: 10991101--10991125 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10991091 AGTAATACAT
10991101 TAATATGTATTA
1 TAATATGTATTA
10991113 TAATATGTATTA
1 TAATATGTATTA
10991125 T
1 T
10991126 TAGGGGCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TAATATGTATTA
Found at i:11006167 original size:30 final size:30
Alignment explanation
Indices: 11006120--11006176 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
11006110 TTGTATACAA
*
11006120 TTTCTTGTTAGAGAAG-AAATCAGTTTGTAG
1 TTTCTTGTGAGAGAAGAAAATC-GTTTGTAG
11006150 TTTCTTGTG-GAGAAAGAAAATCGTTTG
1 TTTCTTGTGAGAG-AAGAAAATCGTTTG
11006177 ATTTTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
29 3 0.12
30 16 0.67
31 5 0.21
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.39
Consensus pattern (30 bp):
TTTCTTGTGAGAGAAGAAAATCGTTTGTAG
Found at i:11007754 original size:21 final size:21
Alignment explanation
Indices: 11007728--11007782 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
11007718 ATAGCGGCGG
*
11007728 CGGTGAGATTAGTTACTATAA
1 CGGTGAGATTAGATACTATAA
*
11007749 CGGTGAGATTAGATACTATAG
1 CGGTGAGATTAGATACTATAA
11007770 CGGTGAGATTAGA
1 CGGTGAGATTAGA
11007783 AACAACGGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (21 bp):
CGGTGAGATTAGATACTATAA
Found at i:11010889 original size:24 final size:24
Alignment explanation
Indices: 11010852--11010925 Score: 87
Period size: 24 Copynumber: 3.1 Consensus size: 24
11010842 TATATGGCTA
* *
11010852 TTCGGTGCTTCCCGTTAAGTGCTC
1 TTCGGAGCTACCCGTTAAGTGCTC
*
11010876 TTCGGAGCTACCCGTTAATTGCTC
1 TTCGGAGCTACCCGTTAAGTGCTC
* *
11010900 TTTGGAGCTACCCTTTATAG-GCTC
1 TTCGGAGCTACCCGTTA-AGTGCTC
11010924 TT
1 TT
11010926 TGTGAGCTTC
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
24 42 0.98
25 1 0.02
ACGTcount: A:0.14, C:0.27, G:0.22, T:0.38
Consensus pattern (24 bp):
TTCGGAGCTACCCGTTAAGTGCTC
Found at i:11010926 original size:24 final size:24
Alignment explanation
Indices: 11010762--11010933 Score: 82
Period size: 24 Copynumber: 7.0 Consensus size: 24
11010752 TTATGAATGT
* *
11010762 CCCGTTATATGGCTCTTCGTGAGCTT
1 CCCGTTA-ATGGCTCTTTG-GAGCTA
* * *
11010788 TCCGATTAAAGGCTCTTTGTGAGCTT
1 CCCG-TTAATGGCTCTTTG-GAGCTA
* * * *
11010814 CTCGTTAGT-GCTCTCTT-GAACTT
1 CCCGTTAATGGCTCT-TTGGAGCTA
* * * * *
11010837 CCAGTTATATGGCTATTCGGTGCTT
1 CCCGTTA-ATGGCTCTTTGGAGCTA
*
11010862 CCCGTTAA-GTGCTCTTCGGAGCTA
1 CCCGTTAATG-GCTCTTTGGAGCTA
*
11010886 CCCGTTAATTGCTCTTTGGAGCTA
1 CCCGTTAATGGCTCTTTGGAGCTA
*
11010910 CCC-TTTATAGGCTCTTTGTGAGCT
1 CCCGTTAAT-GGCTCTTTG-GAGCT
11010934 TCTCGTTATA
Statistics
Matches: 114, Mismatches: 23, Indels: 19
0.73 0.15 0.12
Matches are distributed among these distances:
23 15 0.13
24 51 0.45
25 24 0.21
26 21 0.18
27 3 0.03
ACGTcount: A:0.15, C:0.24, G:0.22, T:0.38
Consensus pattern (24 bp):
CCCGTTAATGGCTCTTTGGAGCTA
Found at i:11012245 original size:3 final size:3
Alignment explanation
Indices: 11012237--11012281 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
11012227 GATCAAAAAC
11012237 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
11012282 GAAAAGATAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:11012600 original size:2 final size:2
Alignment explanation
Indices: 11012562--11012588 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
11012552 AATATGTAAA
11012562 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
11012589 AGTATGTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:11012670 original size:35 final size:38
Alignment explanation
Indices: 11012617--11012693 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 38
11012607 TGAAACATAG
* *
11012617 AAAATATATAAAAGTATG-TGTATATATATAT-TTATA
1 AAAATATAAAAAAATATGATGTATATATATATATTATA
*
11012653 AAAAT-TAAAAAAATATGTATGTATATGTATATATTATA
1 AAAATATAAAAAAATATG-ATGTATATATATATATTATA
11012691 AAA
1 AAA
11012694 CGTATGTATG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
35 10 0.29
36 5 0.14
37 12 0.34
38 8 0.23
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (38 bp):
AAAATATAAAAAAATATGATGTATATATATATATTATA
Found at i:11012718 original size:34 final size:30
Alignment explanation
Indices: 11012666--11012727 Score: 79
Period size: 34 Copynumber: 1.9 Consensus size: 30
11012656 ATTAAAAAAA
*
11012666 TATGTATGTATATGTATATATTATAAAACG
1 TATGTATGTATATGTATATATAATAAAACG
11012696 TATGTATGTATACATGCATATATATAATAAAA
1 TATGTATGTAT--ATG--TATATATAATAAAA
11012728 TTTGAAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
30 11 0.41
32 3 0.11
34 13 0.48
ACGTcount: A:0.44, C:0.05, G:0.11, T:0.40
Consensus pattern (30 bp):
TATGTATGTATATGTATATATAATAAAACG
Found at i:11013258 original size:23 final size:24
Alignment explanation
Indices: 11013228--11013274 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
11013218 AAATTAAATC
11013228 TCTAAGATTACA-AAATCATATCT
1 TCTAAGATTACATAAATCATATCT
* *
11013251 TCTAAGATTGCATATATCATATCT
1 TCTAAGATTACATAAATCATATCT
11013275 AAGATTGCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.38, C:0.17, G:0.06, T:0.38
Consensus pattern (24 bp):
TCTAAGATTACATAAATCATATCT
Found at i:11013277 original size:21 final size:21
Alignment explanation
Indices: 11013251--11013305 Score: 96
Period size: 19 Copynumber: 2.7 Consensus size: 21
11013241 AATCATATCT
11013251 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATATCATA
11013272 TCTAAGATTGC--ATATCATA
1 TCTAAGATTGCATATATCATA
11013291 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
11013306 CCTTGAAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
19 19 0.59
21 13 0.41
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (21 bp):
TCTAAGATTGCATATATCATA
Found at i:11017230 original size:14 final size:14
Alignment explanation
Indices: 11017211--11017244 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
11017201 ATTAATGGTG
11017211 ATTAAGTTTAATTA
1 ATTAAGTTTAATTA
11017225 ATTAAGTTTAATTA
1 ATTAAGTTTAATTA
11017239 AGTTAA
1 A-TTAA
11017245 ATAAGTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 15 0.79
15 4 0.21
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (14 bp):
ATTAAGTTTAATTA
Found at i:11018781 original size:16 final size:17
Alignment explanation
Indices: 11018749--11018781 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
11018739 TATTATTGTT
*
11018749 AAATAATTTACTTTAAA
1 AAATAATATACTTTAAA
11018766 AAATAATATA-TTTAAA
1 AAATAATATACTTTAAA
11018782 TTATATTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (17 bp):
AAATAATATACTTTAAA
Found at i:11019194 original size:40 final size:40
Alignment explanation
Indices: 11019110--11019242 Score: 121
Period size: 40 Copynumber: 3.4 Consensus size: 40
11019100 AGCGGCATTT
* * * * *
11019110 TTAGCGGCG-TTTGGACAAAAAACACCACTAAAAATCGAGAA
1 TTAGCGGCGCTTT-TACAGAAAACGCCGCTAAAAAT-GAGCA
* **
11019151 TTAGCGGCGCTTTTATA-AAAACGCCGCTAAAGGTAGAGCA
1 TTAGCGGCGCTTTTACAGAAAACGCCGCTAAAAAT-GAGCA
* *
11019191 TTAGCGGCGC-TTAACAGAAAACGCCGCTAAAAATTAGCA
1 TTAGCGGCGCTTTTACAGAAAACGCCGCTAAAAATGAGCA
11019230 TTAGCGGCG-TTTT
1 TTAGCGGCGCTTTT
11019243 CTGAAAATCG
Statistics
Matches: 75, Mismatches: 14, Indels: 8
0.77 0.14 0.08
Matches are distributed among these distances:
39 19 0.25
40 42 0.56
41 11 0.15
42 3 0.04
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (40 bp):
TTAGCGGCGCTTTTACAGAAAACGCCGCTAAAAATGAGCA
Found at i:11019682 original size:15 final size:16
Alignment explanation
Indices: 11019662--11019695 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
11019652 CAAATATGGT
11019662 GTTTATGGATTT-AGG
1 GTTTATGGATTTAAGG
11019677 GTTTATGGATTTAAGG
1 GTTTATGGATTTAAGG
11019693 GTT
1 GTT
11019696 AGAGGTATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.47
Consensus pattern (16 bp):
GTTTATGGATTTAAGG
Found at i:11019816 original size:33 final size:32
Alignment explanation
Indices: 11019779--11019842 Score: 74
Period size: 33 Copynumber: 2.0 Consensus size: 32
11019769 AATCTGGATT
* * * *
11019779 GGGTTGGGGTTTAGGGATTAGGGATTTAGGGTC
1 GGGTTAGGATTTAAGGATTAGGG-GTTAGGGTC
*
11019812 GGGTTAGGATTTAAGGTTTAGGGGTTAGGGT
1 GGGTTAGGATTTAAGGATTAGGGGTTAGGGT
11019843 TAGAGGTTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
32 7 0.27
33 19 0.73
ACGTcount: A:0.17, C:0.02, G:0.47, T:0.34
Consensus pattern (32 bp):
GGGTTAGGATTTAAGGATTAGGGGTTAGGGTC
Found at i:11019838 original size:21 final size:21
Alignment explanation
Indices: 11019812--11019863 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 21
11019802 ATTTAGGGTC
*
11019812 GGGTTAGGATTTA-AGGTTTAG
1 GGGTTAGG-GTTAGAGGTTTAG
11019833 GGGTTAGGGTTAGAGGTTTAG
1 GGGTTAGGGTTAGAGGTTTAG
11019854 GGGTTTAGGG
1 GGG-TTAGGG
11019864 GTTAAGAGCT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 3 0.11
21 19 0.68
22 6 0.21
ACGTcount: A:0.19, C:0.00, G:0.46, T:0.35
Consensus pattern (21 bp):
GGGTTAGGGTTAGAGGTTTAG
Found at i:11020639 original size:19 final size:18
Alignment explanation
Indices: 11020615--11020653 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
11020605 AAATATAAGA
11020615 AAAAATAAAATACAAAAAT
1 AAAAATAAAATA-AAAAAT
**
11020634 AAAAATGGAATAAAAAAT
1 AAAAATAAAATAAAAAAT
11020652 AA
1 AA
11020654 TTCTTTATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.77, C:0.03, G:0.05, T:0.15
Consensus pattern (18 bp):
AAAAATAAAATAAAAAAT
Found at i:11021858 original size:16 final size:16
Alignment explanation
Indices: 11021839--11021873 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
11021829 CCGTCGCAGG
11021839 CCTCTACCGTCACACT
1 CCTCTACCGTCACACT
*
11021855 CCTCTTCCGTCACACT
1 CCTCTACCGTCACACT
11021871 CCT
1 CCT
11021874 TTCTTCTGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.14, C:0.51, G:0.06, T:0.29
Consensus pattern (16 bp):
CCTCTACCGTCACACT
Found at i:11024457 original size:66 final size:65
Alignment explanation
Indices: 11024350--11024514 Score: 206
Period size: 66 Copynumber: 2.5 Consensus size: 65
11024340 GAGCAAATTA
* * * *
11024350 CACAACTTAAAGCGGAGGCAACATCGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCCA
1 CACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAG-TATGAAGAACTCCA
11024414 G
65 G
* *
11024415 CTACAACTGAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACGAAAGTATGAAGAACTCCA
1 C-ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCA
11024480 G
65 G
* * **
11024481 CAGCAGCTTAAAGCAGATGCGGCAGTAAGAGAAG
1 CA-CAACTTAAAGCAGATGCAGCAGCGAGAGAAG
11024515 TAGAGGCGGC
Statistics
Matches: 86, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
65 2 0.02
66 80 0.93
67 4 0.05
ACGTcount: A:0.41, C:0.19, G:0.27, T:0.13
Consensus pattern (65 bp):
CACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAGGTTCAACAAAAGTATGAAGAACTCCAG
Found at i:11024523 original size:21 final size:21
Alignment explanation
Indices: 11024499--11024548 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
11024489 TAAAGCAGAT
*
11024499 GCGGCAG-TAAGAGAAGTAGAG
1 GCGGCAGCT-AGAGAAGTACAG
11024520 GCGGCAGCTAGAGAAGTACAG
1 GCGGCAGCTAGAGAAGTACAG
*
11024541 GCTGCAGC
1 GCGGCAGC
11024549 GAGGGAAGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 25 0.96
22 1 0.04
ACGTcount: A:0.32, C:0.18, G:0.40, T:0.10
Consensus pattern (21 bp):
GCGGCAGCTAGAGAAGTACAG
Found at i:11024556 original size:21 final size:21
Alignment explanation
Indices: 11024511--11024602 Score: 103
Period size: 21 Copynumber: 4.4 Consensus size: 21
11024501 GGCAGTAAGA
* * * *
11024511 GAAGTAGAGGCGGCAGCTAGA
1 GAAGCAGAGGCTGCAGCGAGG
* *
11024532 GAAGTACAGGCTGCAGCGAGG
1 GAAGCAGAGGCTGCAGCGAGG
** *
11024553 GAAGCAGAGGCTAAAGCAAGG
1 GAAGCAGAGGCTGCAGCGAGG
11024574 GAAGCAGAGGCTGCAGCGAGG
1 GAAGCAGAGGCTGCAGCGAGG
11024595 GAAGCAGA
1 GAAGCAGA
11024603 ACAGCGTCAA
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 59 1.00
ACGTcount: A:0.35, C:0.16, G:0.42, T:0.07
Consensus pattern (21 bp):
GAAGCAGAGGCTGCAGCGAGG
Found at i:11024981 original size:43 final size:42
Alignment explanation
Indices: 11024906--11025200 Score: 175
Period size: 43 Copynumber: 6.9 Consensus size: 42
11024896 ATCTGCCAAA
** * * * *
11024906 TTTAGTGGCGTTTTTAAAAAAAACGCCACTAAAGGTGTTGGCC
1 TTTAGTGGCGTTTTTGGAAAAAGCGCCACTAAAGAT-ATGGTC
* * * *
11024949 TTTAGTGGCGTTTTTGGTAAAAGTGCCGCTAAAGATAAGGGTC
1 TTTAGTGGCGTTTTTGGAAAAAGCGCCACTAAAGAT-ATGGTC
* * *
11024992 TTTAGCGGCGTTTGTGAAAAAAGCGCCACTAAAGATCATGGTC
1 TTTAGTGGCGTTTTTGGAAAAAGCGCCACTAAAGAT-ATGGTC
* ** *
11025035 TTTAGCGGCGTTTTTGGGGAAAGCGCCGCTAAAGAT-TAGGTTC
1 TTTAGTGGCGTTTTTGGAAAAAGCGCCACTAAAGATAT-GG-TC
*** * * *
11025078 TTTAGTGGCGTTTTGTGGTTGAAGCGCCGCTATAGATCAGGGTC
1 TTTAGTGGCGTTTT-TGGAAAAAGCGCCACTAAAGAT-ATGGTC
* ** *
11025122 TATTA-CGGC-TTTTTAGGGGAAAGCGCCGCTAAAGAT-TAGGTTC
1 T-TTAGTGGCGTTTTT-GGAAAAAGCGCCACTAAAGATAT-GG-TC
* ** * *
11025165 TTTAGTGGCGTTTGTGGTCAAAGCGCCGCTATAGAT
1 TTTAGTGGCGTTTTTGGAAAAAGCGCCACTAAAGAT
11025201 CAGGGTCTAT
Statistics
Matches: 200, Mismatches: 41, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
41 1 0.00
42 8 0.04
43 158 0.79
44 28 0.14
45 5 0.03
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (42 bp):
TTTAGTGGCGTTTTTGGAAAAAGCGCCACTAAAGATATGGTC
Found at i:11025051 original size:86 final size:86
Alignment explanation
Indices: 11024906--11025208 Score: 322
Period size: 86 Copynumber: 3.5 Consensus size: 86
11024896 ATCTGCCAAA
* * * * *** * * **
11024906 TTTAGTGGCGTTTTTAAAAAAAACGCCACTAAAGGTGTTGGCCTTTAGTGGCGTTTTTGGTAAAA
1 TTTAGTGGCGTTTGTGAAAAAAGCGCCACTAAAGATCAGGGTCTTTAGCGGCGTTTTTGGGGAAA
* * *
11024971 GTGCCGCTAAAGATAAGGGTC
66 GCGCCGCTAAAGATTAGGTTC
* *
11024992 TTTAGCGGCGTTTGTGAAAAAAGCGCCACTAAAGATCATGGTCTTTAGCGGCGTTTTTGGGGAAA
1 TTTAGTGGCGTTTGTGAAAAAAGCGCCACTAAAGATCAGGGTCTTTAGCGGCGTTTTTGGGGAAA
11025057 GCGCCGCTAAAGATTAGGTTC
66 GCGCCGCTAAAGATTAGGTTC
**** * *
11025078 TTTAGTGGCGTTTTGTGGTTGAAGCGCCGCTATAGATCAGGGTCTATTA-CGGC-TTTTTAGGGG
1 TTTAGTGGCG-TTTGTGAAAAAAGCGCCACTAAAGATCAGGGTCT-TTAGCGGCGTTTTT-GGGG
11025141 AAAGCGCCGCTAAAGATTAGGTTC
63 AAAGCGCCGCTAAAGATTAGGTTC
*** * *
11025165 TTTAGTGGCGTTTGTGGTCAAAGCGCCGCTATAGATCAGGGTCT
1 TTTAGTGGCGTTTGTGAAAAAAGCGCCACTAAAGATCAGGGTCT
11025209 ATTCCGGCGT
Statistics
Matches: 190, Mismatches: 24, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
86 118 0.62
87 69 0.36
88 3 0.02
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (86 bp):
TTTAGTGGCGTTTGTGAAAAAAGCGCCACTAAAGATCAGGGTCTTTAGCGGCGTTTTTGGGGAAA
GCGCCGCTAAAGATTAGGTTC
Found at i:11025209 original size:86 final size:86
Alignment explanation
Indices: 11024955--11025220 Score: 356
Period size: 86 Copynumber: 3.1 Consensus size: 86
11024945 GGCCTTTAGT
** * * * * ** *
11024955 GGCGTTTTTGGTAAAAGTGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGTGAAAAAAGCGCCA
1 GGCGTTTTTGGGGAAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCGTTTGTGGTAAAAGCGCCG
* *
11025020 CTAAAGATCATGGTCT-TTAGC
66 CTATAGATCAGGGTCTATTA-C
**
11025041 GGCGTTTTTGGGGAAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCGTTTTGTGGTTGAAGCGCC
1 GGCGTTTTTGGGGAAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCG-TTTGTGGTAAAAGCGCC
11025106 GCTATAGATCAGGGTCTATTAC
65 GCTATAGATCAGGGTCTATTAC
*
11025128 GGC-TTTTTAGGGGAAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCGTTTGTGGTCAAAGCGCC
1 GGCGTTTTT-GGGGAAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCGTTTGTGGTAAAAGCGCC
*
11025192 GCTATAGATCAGGGTCTATTCC
65 GCTATAGATCAGGGTCTATTAC
11025214 GGCGTTT
1 GGCGTTT
11025221 GAGAAAAAAA
Statistics
Matches: 160, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
86 85 0.53
87 72 0.45
88 3 0.02
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.30
Consensus pattern (86 bp):
GGCGTTTTTGGGGAAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCGTTTGTGGTAAAAGCGCCG
CTATAGATCAGGGTCTATTAC
Found at i:11025218 original size:43 final size:43
Alignment explanation
Indices: 11024948--11025366 Score: 283
Period size: 43 Copynumber: 9.7 Consensus size: 43
11024938 AGGTGTTGGC
* * * *
11024948 CTTTAGTGGCGTTTTTGGTAAAAGTGCCGCTAAAGATAAGGGT
1 CTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGATCAGGGT
** * *
11024991 CTTTAGCGGCGTTTGTGAAAAAAGCGCCACTAAAGATCATGGT
1 CTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGATCAGGGT
* ** * *
11025034 CTTTAGCGGCGTTTTTGGGGAAAGCGCCGCTAAAGATTAGGTT
1 CTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGATCAGGGT
* ** *
11025077 CTTTAGTGGCGTTTTGTGGTTGAAGCGCCGCTATAGATCAGGGT
1 CTTTAGCGGCG-TTTGTGGTAAAAGCGCCGCTAAAGATCAGGGT
* ** * *
11025121 CTATTA-CGGC-TTTTTAGGGGAAAGCGCCGCTAAAGATTAGGTT
1 CT-TTAGCGGCGTTTGT-GGTAAAAGCGCCGCTAAAGATCAGGGT
* * *
11025164 CTTTAGTGGCGTTTGTGGTCAAAGCGCCGCTATAGATCAGGGT
1 CTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGATCAGGGT
* * ** * * ** *
11025207 CTATT-CCGGCGTTTGAGAAAAAAACGCCGCTAAAGACCCTGAT
1 CT-TTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGATCAGGGT
* * * * * *
11025250 CTATAGCGGCGCTTCTAGCACAAA-CGCTGCTAAAGATCAGGGT
1 CTTTAGCGGCGTTTGTGGTA-AAAGCGCCGCTAAAGATCAGGGT
* *** * ***
11025293 CTTTAGCGGCGCTT-CCATTAAAGCGCCGCTAAATG-TCTTAGT
1 CTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAA-GATCAGGGT
* * *
11025335 CTTCAGCGGCGTTTGTGCTAGAAGCGCCGCTA
1 CTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTA
11025367 TAGACCAACA
Statistics
Matches: 284, Mismatches: 81, Indels: 22
0.73 0.21 0.06
Matches are distributed among these distances:
41 3 0.01
42 33 0.12
43 206 0.73
44 39 0.14
45 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGATCAGGGT
Found at i:11025242 original size:86 final size:86
Alignment explanation
Indices: 11024968--11025220 Score: 346
Period size: 87 Copynumber: 2.9 Consensus size: 86
11024958 GTTTTTGGTA
* * * * ** * * *
11024968 AAAGTGCCGCTAAAGATAAGGGTCTTTAGCGGCGTTTGTGAAAAAAGCGCCACTAAAGATCATGG
1 AAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCGTTTGTGGTAAAAGCGCCGCTATAGATCAGGG
*
11025033 TCT-TTAGCGGCGTTTTTGGGG
66 TCTATTA-CGGCGTTTTAGGGG
**
11025054 AAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCGTTTTGTGGTTGAAGCGCCGCTATAGATCAGG
1 AAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCG-TTTGTGGTAAAAGCGCCGCTATAGATCAGG
*
11025119 GTCTATTACGGCTTTTTAGGGG
65 GTCTATTACGGCGTTTTAGGGG
*
11025141 AAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCGTTTGTGGTCAAAGCGCCGCTATAGATCAGGG
1 AAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCGTTTGTGGTAAAAGCGCCGCTATAGATCAGGG
*
11025206 TCTATTCCGGCGTTT
66 TCTATTACGGCGTTT
11025221 GAGAAAAAAA
Statistics
Matches: 148, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
86 72 0.49
87 73 0.49
88 3 0.02
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (86 bp):
AAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCGTTTGTGGTAAAAGCGCCGCTATAGATCAGGG
TCTATTACGGCGTTTTAGGGG
Found at i:11029373 original size:15 final size:14
Alignment explanation
Indices: 11029348--11029382 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
11029338 ATTAATGGTG
11029348 ATTAAGTTTAATTA
1 ATTAAGTTTAATTA
11029362 ATTAAGGTTTAATTA
1 ATTAA-GTTTAATTA
11029377 AGTTAA
1 A-TTAA
11029383 ATAAGTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.26
15 10 0.53
16 4 0.21
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (14 bp):
ATTAAGTTTAATTA
Found at i:11032000 original size:6 final size:6
Alignment explanation
Indices: 11031961--11032008 Score: 53
Period size: 6 Copynumber: 7.8 Consensus size: 6
11031951 AAAAATACAC
* *
11031961 ATTTTA ATTTTA ATTTTT -TTTCTT ATTATTT ATTTTT ATTTTT ATTTT
1 ATTTTT ATTTTT ATTTTT ATTT-TT ATT-TTT ATTTTT ATTTTT ATTTT
11032009 GCAGGGAGAC
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
5 3 0.08
6 27 0.71
7 7 0.18
8 1 0.03
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (6 bp):
ATTTTT
Found at i:11032816 original size:3 final size:3
Alignment explanation
Indices: 11032808--11032838 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
11032798 TACACAAAAA
*
11032808 ATT ATT ATT ATT TTT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
11032839 AAAATAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:11035478 original size:125 final size:125
Alignment explanation
Indices: 11035231--11035546 Score: 411
Period size: 125 Copynumber: 2.5 Consensus size: 125
11035221 ATAAAATCAA
* * * * * * * * * *
11035231 AGCAGGATGATTTATCAGAAGGATTTTTGCAATCGCGCCCATGTGTACGCGTTTTTGCTATAGTA
1 AGCAGGATGCTATATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTA
11035296 GGTCCTGGAAAAATAATTTCGAGTTAACGTTTCTGAGCAAATACTATAAAAAACGCTT-T
66 GGTCCTGGAAAAATAATTTCGAGTTAACGTTTCTGAGCAAATACTATAAAAAACGCTTCT
* * *
11035355 AAGCAGGATGCTATATGCGAAGAATTTGTGAAATTGCGCCCTCGTGGACGCGCTTTTGCTACAGT
1 -AGCAGGATGCTATATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * ** *
11035420 TGGTCCTGGAAGAAATAATTTTGAGTTGACGTTTCTGAGCAAATTGTAT-AAAATCGCTTCT
65 AGGTCCTGGAA-AAATAATTTCGAGTTAACGTTTCTGAGCAAATACTATAAAAAACGCTTCT
* *
11035481 AGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGTGCCCACGTGGACGCGCTTTTGCTACAGTA
1 AGCAGGATGCTATATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTA
11035546 G
66 G
11035547 CATGTTTGGG
Statistics
Matches: 164, Mismatches: 25, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
125 130 0.79
126 34 0.21
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (125 bp):
AGCAGGATGCTATATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGTA
GGTCCTGGAAAAATAATTTCGAGTTAACGTTTCTGAGCAAATACTATAAAAAACGCTTCT
Found at i:11038772 original size:15 final size:15
Alignment explanation
Indices: 11038725--11038827 Score: 81
Period size: 15 Copynumber: 7.1 Consensus size: 15
11038715 TATATTTAAC
*
11038725 TTAAGGGTTAGGGTT
1 TTAAGGTTTAGGGTT
* * *
11038740 TTAAAG-TTAAGATT
1 TTAAGGTTTAGGGTT
11038754 TTAAGGTTTAGGGTT
1 TTAAGGTTTAGGGTT
*
11038769 TTAAAGTTTAGGGTT
1 TTAAGGTTTAGGGTT
*
11038784 TTAA-GTTTAAGG-T
1 TTAAGGTTTAGGGTT
* *
11038797 TTAGGGTTT-GTAGTTT
1 TTAAGGTTTAG--GGTT
11038813 TTAA-GTTTAGGGTT
1 TTAAGGTTTAGGGTT
11038827 T
1 T
11038828 GTGGTTTTTA
Statistics
Matches: 69, Mismatches: 13, Indels: 13
0.73 0.14 0.14
Matches are distributed among these distances:
13 4 0.06
14 26 0.38
15 34 0.49
16 5 0.07
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48
Consensus pattern (15 bp):
TTAAGGTTTAGGGTT
Found at i:11038791 original size:14 final size:15
Alignment explanation
Indices: 11038732--11038798 Score: 84
Period size: 14 Copynumber: 4.6 Consensus size: 15
11038722 AACTTAAGGG
11038732 TTAGGGTTTTAAAG-
1 TTAGGGTTTTAAAGT
* * *
11038746 TTAAGATTTTAAGGT
1 TTAGGGTTTTAAAGT
11038761 TTAGGGTTTTAAAGT
1 TTAGGGTTTTAAAGT
11038776 TTAGGGTTTT-AAGT
1 TTAGGGTTTTAAAGT
*
11038790 TTAAGGTTT
1 TTAGGGTTT
11038799 AGGGTTTGTA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
14 23 0.51
15 22 0.49
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (15 bp):
TTAGGGTTTTAAAGT
Found at i:11038791 original size:29 final size:29
Alignment explanation
Indices: 11038725--11038798 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
11038715 TATATTTAAC
*
11038725 TTAAGGGTTAGGGTTTTAAAGTTAAGATT
1 TTAAGGTTTAGGGTTTTAAAGTTAAGATT
* *
11038754 TTAAGGTTTAGGGTTTTAAAGTTTAGGGTT
1 TTAAGGTTTAGGGTTTTAAAG-TTAAGATT
*
11038784 TTAA-GTTTAAGGTTT
1 TTAAGGTTTAGGGTTT
11038799 AGGGTTTGTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 30 0.75
30 10 0.25
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.46
Consensus pattern (29 bp):
TTAAGGTTTAGGGTTTTAAAGTTAAGATT
Found at i:11038901 original size:65 final size:64
Alignment explanation
Indices: 11038753--11038902 Score: 178
Period size: 65 Copynumber: 2.3 Consensus size: 64
11038743 AAGTTAAGAT
* * * *
11038753 TTTAAGGTTTAGGGTTTTAAAGTTTAGGGTTTTAAGTTTAAGGTTTAGGGTTTGTAGTTTTTAAG
1 TTTAAGGTTTATGGTTTTTAAGTTAAGGG-TTTAAGTTTAAGGTTTAGGGTTTATAGTTTTTAAG
* * * *
11038818 TTTAGGGTTTGTGGTTTTTAAGTTAAGGG-TTAGTGTTTCTAGGTTTAGGGTTTAT-GATTTTTA
1 TTTAAGGTTTATGGTTTTTAAGTTAAGGGTTTA-AGTTT-AAGGTTTAGGGTTTATAG-TTTTTA
11038881 AG
63 AG
11038883 TTTAAGGTTTATGGTTTTTA
1 TTTAAGGTTTATGGTTTTTA
11038903 GGTTTTTAAA
Statistics
Matches: 72, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
63 3 0.04
64 5 0.07
65 64 0.89
ACGTcount: A:0.21, C:0.01, G:0.27, T:0.51
Consensus pattern (64 bp):
TTTAAGGTTTATGGTTTTTAAGTTAAGGGTTTAAGTTTAAGGTTTAGGGTTTATAGTTTTTAAG
Found at i:11038966 original size:22 final size:22
Alignment explanation
Indices: 11038765--11038907 Score: 132
Period size: 22 Copynumber: 6.6 Consensus size: 22
11038755 TAAGGTTTAG
*
11038765 GGTTTTAAAGTTTAGGGTTT-T
1 GGTTTTTAAGTTTAGGGTTTGT
*
11038786 AAG--TTTAAGGTTTAGGGTTTGT
1 -GGTTTTTAA-GTTTAGGGTTTGT
*
11038808 AGTTTTTAAGTTTAGGGTTTGT
1 GGTTTTTAAGTTTAGGGTTTGT
* *
11038830 GGTTTTTAAGTTAAGGGTTAGT
1 GGTTTTTAAGTTTAGGGTTTGT
* * *
11038852 -GTTTCTAGGTTTAGGGTTTAT
1 GGTTTTTAAGTTTAGGGTTTGT
* * *
11038873 GATTTTTAAGTTTAAGGTTTAT
1 GGTTTTTAAGTTTAGGGTTTGT
*
11038895 GGTTTTTAGGTTT
1 GGTTTTTAAGTTT
11038908 TTAAAGTTTA
Statistics
Matches: 100, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
20 4 0.04
21 29 0.29
22 62 0.62
23 5 0.05
ACGTcount: A:0.20, C:0.01, G:0.28, T:0.52
Consensus pattern (22 bp):
GGTTTTTAAGTTTAGGGTTTGT
Found at i:11038986 original size:118 final size:117
Alignment explanation
Indices: 11038789--11039001 Score: 295
Period size: 118 Copynumber: 1.8 Consensus size: 117
11038779 GGGTTTTAAG
* * ***
11038789 TTTAAGGTTTAGGGTTTGTAGTTTTTAAGTTTAGGGTTTGTGGTTTTTAAGTTAAGGGTTAGTGT
1 TTTAAAGTTTAAGGTTTGTAGTTTTTAAGTTTAGGGTTTGTGGTTTTTAAGTTAAGGGTTACCCT
* *
11038854 TTCTAGGTTTAGGGTTTATGATTTTTAAGTTTAAGGTTTATGGTTTTTAGGTT
66 TTCTAGATTTAGGG-TTAGGATTTTTAAGTTTAAGGTTTATGGTTTTTAGGTT
*
11038907 TTTAAAGTTTAAGGTTTG-ATGTTTTTAGGTTTAGGGTTTGTGGTTTTTAAGTTAAGGGTTACCC
1 TTTAAAGTTTAAGGTTTGTA-GTTTTTAAGTTTAGGGTTTGTGGTTTTTAAGTTAAGGGTTACCC
* *
11038971 TTT-TTGATTTAAGGGTTAGGGTTTTTAAGTT
65 TTTCTAGATTT-AGGGTTAGGATTTTTAAGTT
11039002 AATGGTTAAT
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
117 20 0.24
118 63 0.76
ACGTcount: A:0.19, C:0.02, G:0.27, T:0.52
Consensus pattern (117 bp):
TTTAAAGTTTAAGGTTTGTAGTTTTTAAGTTTAGGGTTTGTGGTTTTTAAGTTAAGGGTTACCCT
TTCTAGATTTAGGGTTAGGATTTTTAAGTTTAAGGTTTATGGTTTTTAGGTT
Found at i:11038995 original size:21 final size:21
Alignment explanation
Indices: 11038927--11039009 Score: 76
Period size: 21 Copynumber: 3.9 Consensus size: 21
11038917 AAGGTTTGAT
* * *
11038927 GTTTTTAGGTTTAGGGTTTGTG
1 GTTTTTAAGTTAAGGGTTAG-G
**
11038949 GTTTTTAAGTTAAGGGTTACC
1 GTTTTTAAGTTAAGGGTTAGG
* * *
11038970 CTTTTTGATTTAAGGGTTAGG
1 GTTTTTAAGTTAAGGGTTAGG
*
11038991 GTTTTTAAGTTAATGGTTA
1 GTTTTTAAGTTAAGGGTTA
11039010 ATATTAGGGT
Statistics
Matches: 47, Mismatches: 14, Indels: 1
0.76 0.23 0.02
Matches are distributed among these distances:
21 31 0.66
22 16 0.34
ACGTcount: A:0.19, C:0.04, G:0.28, T:0.49
Consensus pattern (21 bp):
GTTTTTAAGTTAAGGGTTAGG
Found at i:11039034 original size:118 final size:116
Alignment explanation
Indices: 11038789--11039049 Score: 273
Period size: 118 Copynumber: 2.2 Consensus size: 116
11038779 GGGTTTTAAG
* ***
11038789 TTTAAGGTTTAGGGTTTGTAGTTTTTAAGTTTAGGGTTTGTGGTTTTTAAGTTAAGGGTTAGTGT
1 TTTAA-GTTTAAGGTTTGTAGTTTTTAAGTTTAGGGTTTGTGGTTTTTAAGTTAAGGGTTACCCT
* * *
11038854 TTCTAGGTTTAGGGTTTATGATTTTTAAGTTTAAGGTTTATGGTTTTTAGGTT
65 TTCTAGATTTAGGGTTTAGGATTTTTAAGTTTAAGGTTTATGG-TGTTAGGTT
*
11038907 TTTAAAGTTTAAGGTTTG-ATGTTTTTAGGTTTAGGGTTTGTGGTTTTTAAGTTAAGGGTTACCC
1 TTT-AAGTTTAAGGTTTGTA-GTTTTTAAGTTTAGGGTTTGTGGTTTTTAAGTTAAGGGTTACCC
* *
11038971 TTT-TTGATTTAAGGG-TTAGGGTTTTTAAG-TTAATGGTTAATATTAGG-GTTAGGGTT
64 TTTCTAGATTT-AGGGTTTAGGATTTTTAAGTTTAA-GGTT--TA-T-GGTGTTA-GGTT
*
11039027 TTT-AGTTTAAGGGTTTATAGTTT
1 TTTAAGTTTAA-GGTTTGTAGTTT
11039050 GTCAATTAAA
Statistics
Matches: 121, Mismatches: 11, Indels: 21
0.79 0.07 0.14
Matches are distributed among these distances:
116 4 0.03
117 22 0.18
118 68 0.56
119 16 0.13
120 9 0.07
121 2 0.02
ACGTcount: A:0.20, C:0.02, G:0.27, T:0.51
Consensus pattern (116 bp):
TTTAAGTTTAAGGTTTGTAGTTTTTAAGTTTAGGGTTTGTGGTTTTTAAGTTAAGGGTTACCCTT
TCTAGATTTAGGGTTTAGGATTTTTAAGTTTAAGGTTTATGGTGTTAGGTT
Found at i:11039617 original size:18 final size:18
Alignment explanation
Indices: 11039594--11039631 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
11039584 CTCGAAAAAA
* *
11039594 GATACATATAAGGGTTAG
1 GATACATAAAAGGGCTAG
11039612 GATACATAAAAGGGCTAG
1 GATACATAAAAGGGCTAG
11039630 GA
1 GA
11039632 AACGCATCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.42, C:0.08, G:0.29, T:0.21
Consensus pattern (18 bp):
GATACATAAAAGGGCTAG
Found at i:11041551 original size:11 final size:12
Alignment explanation
Indices: 11041535--11041578 Score: 58
Period size: 11 Copynumber: 3.8 Consensus size: 12
11041525 ATTAAATATG
11041535 AATTTGAGA-GA
1 AATTTGAGAGGA
11041546 AATTTG-GAAGGA
1 AATTTGAG-AGGA
11041558 AA-TTGAGAGGA
1 AATTTGAGAGGA
11041569 AATTTGAGAG
1 AATTTGAGAG
11041579 AGGATTTGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 1 0.03
11 16 0.55
12 12 0.41
ACGTcount: A:0.43, C:0.00, G:0.32, T:0.25
Consensus pattern (12 bp):
AATTTGAGAGGA
Found at i:11042637 original size:15 final size:15
Alignment explanation
Indices: 11042617--11042652 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
11042607 TCTTCTTTTT
*
11042617 TTCTTCATCCTCTTC
1 TTCTTCATCCTCGTC
*
11042632 TTCTTCATCGTCGTC
1 TTCTTCATCCTCGTC
11042647 TTCTTC
1 TTCTTC
11042653 TTCTCCTTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.06, C:0.36, G:0.06, T:0.53
Consensus pattern (15 bp):
TTCTTCATCCTCGTC
Found at i:11047336 original size:18 final size:16
Alignment explanation
Indices: 11047307--11047347 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
11047297 AAGAAAAACT
11047307 TAATA-ATA-ACATAAA
1 TAATATATATACAT-AA
11047322 TAATAATATATACATAA
1 TAAT-ATATATACATAA
11047339 TAATATATA
1 TAATATATA
11047348 AAAGTTGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
15 4 0.17
16 6 0.26
17 9 0.39
18 4 0.17
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (16 bp):
TAATATATATACATAA
Found at i:11047340 original size:14 final size:14
Alignment explanation
Indices: 11047307--11047349 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
11047297 AAGAAAAACT
*
11047307 TAATAATAACATAAA
1 TAATAAT-ATATAAA
*
11047322 TAATAATATATACA
1 TAATAATATATAAA
11047336 TAATAATATATAAA
1 TAATAATATATAAA
11047350 AGTTGAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
14 18 0.72
15 7 0.28
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.33
Consensus pattern (14 bp):
TAATAATATATAAA
Found at i:11048803 original size:21 final size:22
Alignment explanation
Indices: 11048779--11048819 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
11048769 ACATTTGGAC
11048779 ATTGGTTTT-TTTTTGTTTTCT
1 ATTGGTTTTATTTTTGTTTTCT
*
11048800 ATTGGTTTTATTTTTTTTTT
1 ATTGGTTTTATTTTTGTTTT
11048820 TGAAATGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.07, C:0.02, G:0.12, T:0.78
Consensus pattern (22 bp):
ATTGGTTTTATTTTTGTTTTCT
Found at i:11049547 original size:87 final size:87
Alignment explanation
Indices: 11049436--11049617 Score: 301
Period size: 87 Copynumber: 2.1 Consensus size: 87
11049426 ACTTGTAATC
* * *
11049436 TTCGATCTGCTTCACTGTCGACGCAGGAGGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAA
1 TTCGATCTGCTTCACTGTCAACGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTACAA
*
11049501 CTGATGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
** *
11049523 TTCGATCTGCTTTGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTACAA
1 TTCGATCTGCTTCACTGTCAACGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTACAA
11049588 CCGATGGAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
11049610 TTCGATCT
1 TTCGATCT
11049618 TCACTGATCT
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 88 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.29
Consensus pattern (87 bp):
TTCGATCTGCTTCACTGTCAACGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCCACTACAA
CCGATGGAGGCAAGGCTTTGTT
Found at i:11051238 original size:18 final size:18
Alignment explanation
Indices: 11051196--11051230 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
11051186 TCTCAAAACC
11051196 ACCTTTGGTCACAAAGCA
1 ACCTTTGGTCACAAAGCA
11051214 ACCTTTGGTCACAAAGC
1 ACCTTTGGTCACAAAGC
11051231 GCCCTTTGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (18 bp):
ACCTTTGGTCACAAAGCA
Found at i:11055985 original size:18 final size:16
Alignment explanation
Indices: 11055956--11055996 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
11055946 AAGAAAAACT
11055956 TAATA-ATA-ACATAAA
1 TAATATATATACAT-AA
11055971 TAATAATATATACATAA
1 TAAT-ATATATACATAA
11055988 TAATATATA
1 TAATATATA
11055997 AAAGTTGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
15 4 0.17
16 6 0.26
17 9 0.39
18 4 0.17
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (16 bp):
TAATATATATACATAA
Found at i:11055989 original size:14 final size:14
Alignment explanation
Indices: 11055956--11055998 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
11055946 AAGAAAAACT
*
11055956 TAATAATAACATAAA
1 TAATAAT-ATATAAA
*
11055971 TAATAATATATACA
1 TAATAATATATAAA
11055985 TAATAATATATAAA
1 TAATAATATATAAA
11055999 AGTTGAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
14 18 0.72
15 7 0.28
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.33
Consensus pattern (14 bp):
TAATAATATATAAA
Found at i:11057453 original size:24 final size:26
Alignment explanation
Indices: 11057426--11057475 Score: 70
Period size: 24 Copynumber: 2.0 Consensus size: 26
11057416 ACATTTGGAC
11057426 ATTGGTTTT-TTT-TTT-TTGTTTTCT
1 ATTGGTTTTATTTATTTATT-TTTTCT
11057450 ATTGGTTTTATTTATTTATTTTTTCT
1 ATTGGTTTTATTTATTTATTTTTTCT
11057476 GAAATGTATG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 9 0.39
25 3 0.13
26 9 0.39
27 2 0.09
ACGTcount: A:0.10, C:0.04, G:0.10, T:0.76
Consensus pattern (26 bp):
ATTGGTTTTATTTATTTATTTTTTCT
Found at i:11060293 original size:15 final size:14
Alignment explanation
Indices: 11060273--11060312 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
11060263 ACGGTCTGGC
*
11060273 CACACGGCCATGTGA
1 CACACGGCCAT-AGA
11060288 CACACGGCC-TAGA
1 CACACGGCCATAGA
11060301 CACACGGCCATA
1 CACACGGCCATA
11060313 TGTCTTATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 11 0.48
14 3 0.13
15 9 0.39
ACGTcount: A:0.30, C:0.38, G:0.23, T:0.10
Consensus pattern (14 bp):
CACACGGCCATAGA
Found at i:11060417 original size:20 final size:21
Alignment explanation
Indices: 11060375--11060424 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
11060365 ACAGTCTGAT
*
11060375 CACACGGGCATGTGGGTAAGC
1 CACACGGCCATGTGGGTAAGC
*
11060396 CACACGGCCATGTGTG-AAGC
1 CACACGGCCATGTGGGTAAGC
11060416 CACACGGCC
1 CACACGGCC
11060425 TGGACTATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 13 0.48
21 14 0.52
ACGTcount: A:0.24, C:0.32, G:0.32, T:0.12
Consensus pattern (21 bp):
CACACGGCCATGTGGGTAAGC
Found at i:11068789 original size:123 final size:121
Alignment explanation
Indices: 11068561--11068935 Score: 552
Period size: 123 Copynumber: 3.0 Consensus size: 121
11068551 TTAGGATTTT
* ** *
11068561 TAGGTCTTGGAAGAAATAATTTCGAGTTGACGTTTCTGATCAAATAGTATAAAATCGCTTCTAGC
1 TAGGTCATGGAAGAAATAATTT--TTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGC
* *
11068626 AGGATGCTATTTGAGAAGAATTTGTGAAATCTTGCCCTCGTGGACGCGCTTTTGCAACAG
64 AGGATGCTATTTGAGAAGAATTTGTAAAATC--GCCCTCGTGGACGCGCTTTTGCTACAG
*
11068686 TAGGTCATGGAAGAAATAATTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTTTAGCAG
1 TAGGTCATGGAAGAAATAATTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAG
*
11068751 GATGCTATTTGAGAAAAATTTGTAAAATCGCACTCTCGTGGACGCGCTTTTGCTACAG
66 GATGCTATTTGAGAAGAATTTGTAAAATCGC-C-CTCGTGGACGCGCTTTTGCTACAG
* * * *
11068809 TCGGTCATGGAAGAAATATTTTTTTTGACGTTTATGAGCAAACAGTATAAAATCGCTTCTAGCAG
1 TAGGTCATGGAAGAAATAATTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAG
*
11068874 GATGCTATTTGAGAAGAATTTGTGAAAATCGGGCCCTCGTGGACACGCTTTTGCTACAG
66 GATGCTATTTGAGAAGAATTTGT-AAAATC--GCCCTCGTGGACGCGCTTTTGCTACAG
11068933 TAG
1 TAG
11068936 CATGTTTGGG
Statistics
Matches: 229, Mismatches: 16, Indels: 11
0.89 0.06 0.04
Matches are distributed among these distances:
121 2 0.01
122 1 0.00
123 171 0.75
124 31 0.14
125 22 0.10
126 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (121 bp):
TAGGTCATGGAAGAAATAATTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAG
GATGCTATTTGAGAAGAATTTGTAAAATCGCCCTCGTGGACGCGCTTTTGCTACAG
Found at i:11070199 original size:21 final size:21
Alignment explanation
Indices: 11070173--11070216 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
11070163 AAGTACAAAA
11070173 GTCCACATACATATACTGCAG
1 GTCCACATACATATACTGCAG
11070194 GTCCACATACATATACTGCAG
1 GTCCACATACATATACTGCAG
11070215 GT
1 GT
11070217 ATAGTATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (21 bp):
GTCCACATACATATACTGCAG
Found at i:11072195 original size:23 final size:22
Alignment explanation
Indices: 11072169--11072728 Score: 407
Period size: 23 Copynumber: 25.2 Consensus size: 22
11072159 AAGTAAAATT
*
11072169 ATTAACTTAGTTTAGGGTTTTTA
1 ATTAA-TTAGGTTAGGGTTTTTA
* *
11072192 ATTAACTTAGTTTAGGGTTTTAA
1 ATTAA-TTAGGTTAGGGTTTTTA
* * *
11072215 AGTTAA--GGGTAATGGTTTTTA
1 A-TTAATTAGGTTAGGGTTTTTA
*
11072236 AGTTAA-GA-GTTAGGGTTTTTA
1 A-TTAATTAGGTTAGGGTTTTTA
* **
11072257 AGTAA-GGGGTTAGGGTTTTTA
1 ATTAATTAGGTTAGGGTTTTTA
11072278 ATTAAATTAGGTTAGGGTTTTTA
1 ATT-AATTAGGTTAGGGTTTTTA
*
11072301 ATTAA--GGGTTAGGGTTTTTA
1 ATTAATTAGGTTAGGGTTTTTA
* **
11072321 AGTAA-CGGGTTAGGGTTTTTA
1 ATTAATTAGGTTAGGGTTTTTA
*
11072342 ATTTAATTAGGTTAAGG-TTTTA
1 A-TTAATTAGGTTAGGGTTTTTA
* *
11072364 GGGTTTTAGGGTTAAAGGTTAGGGTTTTTA
1 ----ATTA--ATT--AGGTTAGGGTTTTTA
11072394 ATTAAATTAGGTTAGGGTTTTTA
1 ATT-AATTAGGTTAGGGTTTTTA
*
11072417 ATTTAATTAGCTTAGGG-TTTTA
1 A-TTAATTAGGTTAGGGTTTTTA
* *
11072439 GGGTTAA--GGGTTAGGGTTTTTA
1 --ATTAATTAGGTTAGGGTTTTTA
11072461 ATTAAATTAGGTTAGGGTTTTTA
1 ATT-AATTAGGTTAGGGTTTTTA
11072484 ATTTAATTAGGTTAGGGTTTTTA
1 A-TTAATTAGGTTAGGGTTTTTA
11072507 ATTTAATTAGGTTAGGGTTTTTA
1 A-TTAATTAGGTTAGGGTTTTTA
*
11072530 ATTAA--A-G---GGTTTTTTA
1 ATTAATTAGGTTAGGGTTTTTA
*
11072546 TTTAATTAGGTTAGGG-TTTTA
1 ATTAATTAGGTTAGGGTTTTTA
**
11072567 GGGT-ATTAGGTTAGGG-TTTTA
1 -ATTAATTAGGTTAGGGTTTTTA
* *
11072588 GGGTTAA--GGGTTAGGGTTTTTA
1 --ATTAATTAGGTTAGGGTTTTTA
*
11072610 ATTAAATTAGGTTAGGATTTTTA
1 ATT-AATTAGGTTAGGGTTTTTA
11072633 ATTAAATTAGGTTAGGG-TTTTA
1 ATT-AATTAGGTTAGGGTTTTTA
*
11072655 GGGTTAA--AGGTTAGGGTTTTTA
1 --ATTAATTAGGTTAGGGTTTTTA
11072677 ATTAAATTAGGTTAGGGTTTTTA
1 ATT-AATTAGGTTAGGGTTTTTA
11072700 ATTTAATTAGGTTAGGGTTTTTA
1 A-TTAATTAGGTTAGGGTTTTTA
11072723 AGTTAA
1 A-TTAA
11072729 GGGTATAAAT
Statistics
Matches: 446, Mismatches: 45, Indels: 92
0.77 0.08 0.16
Matches are distributed among these distances:
16 12 0.03
18 1 0.00
19 2 0.00
20 29 0.07
21 111 0.25
22 47 0.11
23 209 0.47
24 12 0.03
25 5 0.01
26 2 0.00
27 3 0.01
29 8 0.02
30 5 0.01
ACGTcount: A:0.27, C:0.01, G:0.26, T:0.46
Consensus pattern (22 bp):
ATTAATTAGGTTAGGGTTTTTA
Found at i:11072233 original size:21 final size:21
Alignment explanation
Indices: 11072205--11072347 Score: 123
Period size: 21 Copynumber: 6.8 Consensus size: 21
11072195 AACTTAGTTT
*
11072205 AGGGTTTTAAAGTTAAGGGTA
1 AGGGTTTTTAAGTTAAGGGTA
* * *
11072226 ATGGTTTTTAAGTTAAGAGTT
1 AGGGTTTTTAAGTTAAGGGTA
*
11072247 AGGGTTTTTAAG-TAAGGGGTT
1 AGGGTTTTTAAGTTAA-GGGTA
* *
11072268 AGGGTTTTTAA-TTAAATTAGGTT
1 AGGGTTTTTAAGTT-AA--GGGTA
*
11072291 AGGGTTTTTAA-TTAAGGGTT
1 AGGGTTTTTAAGTTAAGGGTA
*
11072311 AGGGTTTTTAAG-TAACGGGTT
1 AGGGTTTTTAAGTTAA-GGGTA
*
11072332 AGGGTTTTTAATTTAA
1 AGGGTTTTTAAGTTAA
11072348 TTAGGTTAAG
Statistics
Matches: 105, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
20 21 0.20
21 60 0.57
22 7 0.07
23 17 0.16
ACGTcount: A:0.28, C:0.01, G:0.29, T:0.43
Consensus pattern (21 bp):
AGGGTTTTTAAGTTAAGGGTA
Found at i:11072439 original size:67 final size:64
Alignment explanation
Indices: 11072231--11072728 Score: 401
Period size: 67 Copynumber: 7.5 Consensus size: 64
11072221 GGGTAATGGT
* * * * *
11072231 TTTTAAGTTAAGA-GTTAGGGTTTTTAAGTAAGGGGTTAGGGTTTTTAATTAAATTAGGTTAGGG
1 TTTTAGGTTAATAGGTTAGGGTTTTTAATTAA-AGGTTAGGGTTTTTAATTTAATTAGGTTAGGG
* * * *
11072295 TTTTTA-ATTAA-GGGTTAGGGTTTTTAAGTAACGGGTTAGGGTTTTTAATTTAATTAGGTTAAG
1 -TTTTAGGTTAATAGGTTAGGGTTTTTAATTAA-AGGTTAGGGTTTTTAATTT-A--A--TT-AG
11072358 GTTTTAGGG
58 G--TTAGGG
*
11072367 TTTTAGGGTTAA-AGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTTAATTAGCTTA
1 TTTTA-GGTTAATAGGTTAGGGTTTTTAATT-AA--AGGTTAGGGTTTTTAATTTAATTAGGTTA
11072431 GGG
62 GGG
*
11072434 TTTTAGGGTTAA-GGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTTTTAATTTAATTAGGTTA
1 TTTTA-GGTTAATAGGTTAGGGTTTTTAATT-AA--AGGTTAGGGTTTTTAATTTAATTAGGTTA
11072498 GGG
62 GGG
** *
11072501 TTTTTAATTTAATTAGGTTAGGGTTTTTAATT-AA----AGGGTTTTTTATTTAATTAGGTTAGG
1 -TTTTAGGTTAA-TAGGTTAGGGTTTTTAATTAAAGGTTAGGGTTTTTAATTTAATTAGGTTAGG
11072561 G
64 G
* * * * *
11072562 TTTTAGGGTATTAGGTTAGGG-TTTTAGGGTTAAGGGTTAGGGTTTTTAATTAAATTAGGTTAGG
1 TTTTAGGTTAATAGGTTAGGGTTTTTA--ATTAAAGGTTAGGGTTTTTAATTTAATTAGGTTAGG
*
11072626 AT
64 -G
* * *
11072628 TTTTA-ATTAAATTAGGTTAGGG-TTTTAGGGTTAAAGGTTAGGGTTTTTAATTAAATTAGGTTA
1 TTTTAGGTT-AA-TAGGTTAGGGTTTTTA--ATTAAAGGTTAGGGTTTTTAATTTAATTAGGTTA
11072691 GGG
62 GGG
**
11072694 TTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA
1 -TTTTAGGTTAA-TAGGTTAGGGTTTTTAA-TTAA
11072729 GGGTATAAAT
Statistics
Matches: 371, Mismatches: 32, Indels: 58
0.80 0.07 0.13
Matches are distributed among these distances:
58 5 0.01
59 10 0.03
60 9 0.02
61 27 0.07
64 40 0.11
65 32 0.09
66 6 0.02
67 151 0.41
68 12 0.03
69 21 0.06
70 5 0.01
71 5 0.01
72 7 0.02
73 20 0.05
74 3 0.01
75 18 0.05
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.46
Consensus pattern (64 bp):
TTTTAGGTTAATAGGTTAGGGTTTTTAATTAAAGGTTAGGGTTTTTAATTTAATTAGGTTAGGG
Found at i:11072574 original size:21 final size:21
Alignment explanation
Indices: 11072550--11072607 Score: 91
Period size: 21 Copynumber: 2.8 Consensus size: 21
11072540 TTTTTATTTA
11072550 ATTAGGTTAGGGTTTTAGGGT
1 ATTAGGTTAGGGTTTTAGGGT
11072571 ATTAGGTTAGGGTTTTAGGGT
1 ATTAGGTTAGGGTTTTAGGGT
*
11072592 -TAAGGGTTAGGGTTTT
1 ATTA-GGTTAGGGTTTT
11072608 TAATTAAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
20 2 0.06
21 33 0.94
ACGTcount: A:0.19, C:0.00, G:0.38, T:0.43
Consensus pattern (21 bp):
ATTAGGTTAGGGTTTTAGGGT
Found at i:11072621 original size:216 final size:223
Alignment explanation
Indices: 11072169--11072728 Score: 709
Period size: 216 Copynumber: 2.5 Consensus size: 223
11072159 AAGTAAAATT
* * * ** * *
11072169 ATTAACTTAGTTTAGGGTTTTTAA-TTAACTTAGTTTAGGGTTTTAAAGTTAAGGGTAATGGTTT
1 ATTAAATTAGGTTAGGGTTTTTAATTTAA-TTAGCTTAGGGTTTTAGGGTTAAGGGTTAGGGTTT
* * ** *
11072233 TTAAGTT-AA-GA-GTTAGGGTTTTTAA-GTAA-GGGGTTAGGGTTTTTAATTAAATTAGGTTAG
65 TTAA-TTAAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAG
*
11072293 GGTTTTTAATTAAGGGTTAGGGTTTTTAAGTAACGGGTTAGGGTTTTTAATTTAATTAGGTTAAG
129 GGTTTTTAATTAAGGGTTA-GGTTTTTAAGTAAC-GGTTAGGGTTTTTAA--TAAGTA-GTTAAG
11072358 GTTTTAGGGTTTTAGGGTTAAAGGTTAGGGTTTTTA
189 G-TTTAGGGTTTTAGGGTTAAAGGTTAGGGTTTTTA
11072394 ATTAAATTAGGTTAGGGTTTTTAATTTAATTAGCTTAGGGTTTTAGGGTTAAGGGTTAGGGTTTT
1 ATTAAATTAGGTTAGGGTTTTTAATTTAATTAGCTTAGGGTTTTAGGGTTAAGGGTTAGGGTTTT
11072459 TAATTAAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGG
66 TAATTAAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGG
** * **
11072524 TTTTTAATTAAAGGGTT-TTTTATTTAA-TTA-GGTTAGGG-TTTT-A-GGGTA-TT-AGG-TTA
131 TTTTTAATT-AAGGGTTAGGTT-TTTAAGTAACGGTTAGGGTTTTTAATAAGTAGTTAAGGTTTA
*
11072580 GGGTTTTAGGGTTAAGGGTTAGGGTTTTTA
194 GGGTTTTAGGGTTAAAGGTTAGGGTTTTTA
* * * *
11072610 ATTAAATTAGGTTAGGATTTTTAATTAAATTAGGTTAGGGTTTTAGGGTTAAAGGTTAGGGTTTT
1 ATTAAATTAGGTTAGGGTTTTTAATTTAATTAGCTTAGGGTTTTAGGGTTAAGGGTTAGGGTTTT
*
11072675 TAATTAAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA
66 TAATTAAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTTAA
11072729 GGGTATAAAT
Statistics
Matches: 303, Mismatches: 24, Indels: 25
0.86 0.07 0.07
Matches are distributed among these distances:
216 146 0.48
218 3 0.01
219 2 0.01
221 2 0.01
224 3 0.01
225 62 0.20
226 13 0.04
227 14 0.05
228 7 0.02
229 44 0.15
230 7 0.02
ACGTcount: A:0.27, C:0.01, G:0.26, T:0.46
Consensus pattern (223 bp):
ATTAAATTAGGTTAGGGTTTTTAATTTAATTAGCTTAGGGTTTTAGGGTTAAGGGTTAGGGTTTT
TAATTAAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGG
TTTTTAATTAAGGGTTAGGTTTTTAAGTAACGGTTAGGGTTTTTAATAAGTAGTTAAGGTTTAGG
GTTTTAGGGTTAAAGGTTAGGGTTTTTA
Found at i:11072777 original size:9 final size:9
Alignment explanation
Indices: 11072759--11072795 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
11072749 ATTCTCAAAT
11072759 AATA-TCAA
1 AATATTCAA
11072767 AATATTCAA
1 AATATTCAA
11072776 AATATTCAA
1 AATATTCAA
*
11072785 AATATTTAA
1 AATATTCAA
11072794 AA
1 AA
11072796 ATTTCTATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
8 4 0.15
9 23 0.85
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.32
Consensus pattern (9 bp):
AATATTCAA
Found at i:11072825 original size:25 final size:25
Alignment explanation
Indices: 11072794--11072939 Score: 160
Period size: 25 Copynumber: 6.1 Consensus size: 25
11072784 AAATATTTAA
11072794 AAATTTCTATTTTATTACATCAAAT
1 AAATTTCTATTTTATTACATCAAAT
11072819 AAATTTCTATTTTATTACATCAAAT
1 AAATTTCTATTTTATTACATCAAAT
*
11072844 AAACTTCTATTTTATTACATCAAAT
1 AAATTTCTATTTTATTACATCAAAT
* ** * *
11072869 -AATATC-A--AAATAAC-T-AAAA
1 AAATTTCTATTTTATTACATCAAAT
* * *
11072888 AAAATTCTATTTTATTATATTAAAT
1 AAATTTCTATTTTATTACATCAAAT
*
11072913 AAACTTCTATTTTATTACATCAAAT
1 AAATTTCTATTTTATTACATCAAAT
11072938 AA
1 AA
11072940 TATCAAAATA
Statistics
Matches: 98, Mismatches: 17, Indels: 12
0.77 0.13 0.09
Matches are distributed among these distances:
19 3 0.03
20 5 0.05
21 5 0.05
23 4 0.04
24 5 0.05
25 76 0.78
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.43
Consensus pattern (25 bp):
AAATTTCTATTTTATTACATCAAAT
Found at i:11073318 original size:18 final size:18
Alignment explanation
Indices: 11073295--11073334 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
11073285 GACTCGGAAA
*
11073295 AGGATACATATAAGGGTT
1 AGGATACATATAAGGGCT
11073313 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
11073331 AGGA
1 AGGA
11073335 AACGCACCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.40, C:0.07, G:0.30, T:0.23
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:11073995 original size:7 final size:7
Alignment explanation
Indices: 11073985--11074009 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
11073975 TTATATACAT
11073985 AATACTA
1 AATACTA
11073992 AATACTA
1 AATACTA
11073999 AATACTA
1 AATACTA
11074006 AATA
1 AATA
11074010 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:11075256 original size:51 final size:53
Alignment explanation
Indices: 11075149--11075259 Score: 145
Period size: 53 Copynumber: 2.1 Consensus size: 53
11075139 TATTTTAAAA
* * * * * *
11075149 AAGGAAATTGAGAGCAAATTGAAATTAATTGTTAGTATTTGAGAGAAATTTGG
1 AAGGAAAATGACAGAAAATTGAAATTAAATGATAGGATTTGAGAGAAATTTGG
*
11075202 AAGGAAAATGACAGAAAATTGAAATTAAAT-AT-GGATTTGAGAGAATTTTGG
1 AAGGAAAATGACAGAAAATTGAAATTAAATGATAGGATTTGAGAGAAATTTGG
11075253 AAGGAAA
1 AAGGAAA
11075260 TTGAGAGGAA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
51 24 0.47
52 1 0.02
53 26 0.51
ACGTcount: A:0.46, C:0.02, G:0.24, T:0.28
Consensus pattern (53 bp):
AAGGAAAATGACAGAAAATTGAAATTAAATGATAGGATTTGAGAGAAATTTGG
Found at i:11075775 original size:16 final size:18
Alignment explanation
Indices: 11075741--11075778 Score: 62
Period size: 16 Copynumber: 2.2 Consensus size: 18
11075731 TTCTAAGAAA
11075741 TATTTTTGAGATAAAAAG
1 TATTTTTGAGATAAAAAG
11075759 TATTTTTGA-AT-AAAAG
1 TATTTTTGAGATAAAAAG
11075775 TATT
1 TATT
11075779 CTTAAATAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 9 0.45
17 2 0.10
18 9 0.45
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (18 bp):
TATTTTTGAGATAAAAAG
Found at i:11075786 original size:16 final size:16
Alignment explanation
Indices: 11075754--11075787 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
11075744 TTTTGAGATA
* *
11075754 AAAAGTATTTTTGAAT
1 AAAAGTATTCTTAAAT
11075770 AAAAGTATTCTTAAAT
1 AAAAGTATTCTTAAAT
11075786 AA
1 AA
11075788 GTTACTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.03, G:0.09, T:0.38
Consensus pattern (16 bp):
AAAAGTATTCTTAAAT
Found at i:11084370 original size:21 final size:19
Alignment explanation
Indices: 11084313--11084373 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 19
11084303 TAATTATTTA
*
11084313 TAAAATTTA-ATTAGAATAT
1 TAAAATATATATTA-AATAT
*
11084332 ATAAAATATATTTTAAATAT
1 -TAAAATATATATTAAATAT
11084352 TAAAATATAATCATTAAATAT
1 TAAAATAT-AT-ATTAAATAT
11084373 T
1 T
11084374 TGTAATTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
19 8 0.23
20 15 0.43
21 12 0.34
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (19 bp):
TAAAATATATATTAAATAT
Found at i:11084416 original size:17 final size:18
Alignment explanation
Indices: 11084394--11084428 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
11084384 TATTAATATA
11084394 TTTTA-TTATTTTTAATT
1 TTTTATTTATTTTTAATT
11084411 TTTTATTTATTTTTAATT
1 TTTTATTTATTTTTAATT
11084429 AATAATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTATTTATTTTTAATT
Found at i:11084833 original size:2 final size:2
Alignment explanation
Indices: 11084826--11084869 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
11084816 TAGAAGGTTG
11084826 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
11084868 CT
1 CT
11084870 TGTTTTTCCT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:11085775 original size:31 final size:33
Alignment explanation
Indices: 11085740--11085808 Score: 88
Period size: 31 Copynumber: 2.2 Consensus size: 33
11085730 ATTCAAAACA
*
11085740 TAATAGAGATAGCTAAG-CCAATTCAAAGTAC-
1 TAATAGAGATAGCTAAGTCCAATTCAAAATACT
* * *
11085771 TAATAGATATGGCTAAGTCCAGTTCAAAATACT
1 TAATAGAGATAGCTAAGTCCAATTCAAAATACT
11085804 TAATA
1 TAATA
11085809 AAATAACAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 15 0.47
32 12 0.38
33 5 0.16
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.28
Consensus pattern (33 bp):
TAATAGAGATAGCTAAGTCCAATTCAAAATACT
Found at i:11091979 original size:22 final size:22
Alignment explanation
Indices: 11091944--11091986 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
11091934 TTCAAAAATA
* *
11091944 TTTATAAAATAATATTATTTAT
1 TTTATAAAACAATAATATTTAT
*
11091966 TTTATAAAGCAATAATATTTA
1 TTTATAAAACAATAATATTTA
11091987 ATCATTATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (22 bp):
TTTATAAAACAATAATATTTAT
Found at i:11093295 original size:20 final size:20
Alignment explanation
Indices: 11093264--11093313 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
11093254 TCTATTTTTA
*
11093264 TAAT-ATTT-TAATAAGTTT
1 TAATCATTTCTAATAACTTT
11093282 TAATCATTTCTAATAACTTT
1 TAATCATTTCTAATAACTTT
11093302 TCAATCAATTTC
1 T-AATC-ATTTC
11093314 AAAATTATTC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 4 0.15
19 4 0.15
20 10 0.37
21 4 0.15
22 5 0.19
ACGTcount: A:0.36, C:0.12, G:0.02, T:0.50
Consensus pattern (20 bp):
TAATCATTTCTAATAACTTT
Found at i:11095497 original size:18 final size:18
Alignment explanation
Indices: 11095465--11095499 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
11095455 TTTTAAGAAT
**
11095465 TACTTTTAAGCTAAAAAA
1 TACTTTTAAAATAAAAAA
11095483 TACTTTTAAAATAAAAA
1 TACTTTTAAAATAAAAA
11095500 CATTACTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.09, G:0.03, T:0.34
Consensus pattern (18 bp):
TACTTTTAAAATAAAAAA
Found at i:11104409 original size:15 final size:15
Alignment explanation
Indices: 11104369--11104409 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
11104359 TGACTTTTAA
11104369 TGAAATTTTTAAGTT
1 TGAAATTTTTAAGTT
**
11104384 TGAAAAATTTAAGTT
1 TGAAATTTTTAAGTT
11104399 TGAAATTTTTA
1 TGAAATTTTTA
11104410 TTTTTAAATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.49
Consensus pattern (15 bp):
TGAAATTTTTAAGTT
Found at i:11114889 original size:24 final size:23
Alignment explanation
Indices: 11114840--11114889 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
11114830 TAAAGTAAGT
* *
11114840 TATATATTATTTTTATAATATTA
1 TATATATGATTTTTATAATATCA
11114863 TATATTATGATTTTTATGAAT-TCA
1 TATA-TATGATTTTTAT-AATATCA
11114887 TAT
1 TAT
11114890 TTTAATAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 4 0.17
24 16 0.70
25 3 0.13
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (23 bp):
TATATATGATTTTTATAATATCA
Found at i:11114929 original size:40 final size:39
Alignment explanation
Indices: 11114847--11114930 Score: 91
Period size: 40 Copynumber: 2.1 Consensus size: 39
11114837 AGTTATATAT
* * *
11114847 TATTTTTATAATATTATATATTATGATTTTTATGAATTCA
1 TATTTTAATAATAATATATATTAAGATTTTTA-GAATTCA
11114887 TATTTTAATAATAAT-TATATTAAGAATTTATTA-AATTACA
1 TATTTTAATAATAATATATATTAAG-ATTT-TTAGAATT-CA
11114927 TATT
1 TATT
11114931 ATTTTATTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
39 12 0.32
40 23 0.61
41 3 0.08
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (39 bp):
TATTTTAATAATAATATATATTAAGATTTTTAGAATTCA
Found at i:11122730 original size:20 final size:20
Alignment explanation
Indices: 11122696--11122737 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
11122686 AACTATTTAA
** *
11122696 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
11122716 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
11122736 AT
1 AT
11122738 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:11125129 original size:43 final size:43
Alignment explanation
Indices: 11125076--11125191 Score: 130
Period size: 43 Copynumber: 2.7 Consensus size: 43
11125066 TATGTGTTAT
* *
11125076 CATGTAAGACCACGTCTGGGACGTTGGCATCGACT-TGTGTTTA
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGA-TATGCGATTA
* * *
11125119 CGTGTAAGACC-CTGTCTAGGATAG-TGGCATCGATATGCGATTA
1 CATGTAAGACCAC-GTCTGGGA-CGTTGGCATCGATATGCGATTA
*
11125162 CATGTAAGACCATGTCTGGGACGTTGGCAT
1 CATGTAAGACCACGTCTGGGACGTTGGCAT
11125192 TGTACGAGTT
Statistics
Matches: 59, Mismatches: 9, Indels: 10
0.76 0.12 0.13
Matches are distributed among these distances:
42 3 0.05
43 55 0.93
44 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGACGTTGGCATCGATATGCGATTA
Found at i:11126083 original size:2 final size:2
Alignment explanation
Indices: 11126076--11126114 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
11126066 TTATCGAATG
* *
11126076 TA TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA CA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11126115 TTTGATGCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:11126153 original size:23 final size:23
Alignment explanation
Indices: 11126127--11126324 Score: 126
Period size: 23 Copynumber: 8.5 Consensus size: 23
11126117 TGATGCTTAA
*
11126127 ATGCTGCCCAATTTGTTACATAT
1 ATGCTGCCCAATTTGTTGCATAT
* * * *
11126150 ATGCTGTCCAATTTTGATGCTTAA
1 ATGCTGCCCAA-TTTGTTGCATAT
*
11126174 ATGCTGCCCAATTTGTTACATAT
1 ATGCTGCCCAATTTGTTGCATAT
* * * * *
11126197 ATGCTGTCTAATTTTGATGCTTAA
1 ATGCTGCCCAA-TTTGTTGCATAT
*
11126221 ATGCTGCCCAATTTGTTGTATAT
1 ATGCTGCCCAATTTGTTGCATAT
*** * * * *
11126244 ATGCTGTCCGGTTTTGGTGTAAAA
1 ATGCTG-CCCAATTTGTTGCATAT
* ** *
11126268 ATGCTGCTCAAACTGTTGTATAT
1 ATGCTGCCCAATTTGTTGCATAT
* * *
11126291 ATGCTGCCCAAATTGTTGTATTT
1 ATGCTGCCCAATTTGTTGCATAT
*
11126314 ATGCTGTCCAA
1 ATGCTGCCCAA
11126325 ATTTTGGTGT
Statistics
Matches: 131, Mismatches: 41, Indels: 6
0.74 0.23 0.03
Matches are distributed among these distances:
23 79 0.60
24 52 0.40
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40
Consensus pattern (23 bp):
ATGCTGCCCAATTTGTTGCATAT
Found at i:11126177 original size:24 final size:24
Alignment explanation
Indices: 11126113--11126234 Score: 131
Period size: 24 Copynumber: 5.2 Consensus size: 24
11126103 ATATATACAT
11126113 ATTTTGATGCTTAAATGCTGCCCA
1 ATTTTGATGCTTAAATGCTGCCCA
* * * * *
11126137 A-TTTGTTACATATATGCTGTCCA
1 ATTTTGATGCTTAAATGCTGCCCA
11126160 ATTTTGATGCTTAAATGCTGCCCA
1 ATTTTGATGCTTAAATGCTGCCCA
* * * * * *
11126184 A-TTTGTTACATATATGCTGTCTA
1 ATTTTGATGCTTAAATGCTGCCCA
11126207 ATTTTGATGCTTAAATGCTGCCCA
1 ATTTTGATGCTTAAATGCTGCCCA
11126231 ATTT
1 ATTT
11126235 GTTGTATATA
Statistics
Matches: 74, Mismatches: 22, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
23 35 0.47
24 39 0.53
ACGTcount: A:0.25, C:0.18, G:0.15, T:0.42
Consensus pattern (24 bp):
ATTTTGATGCTTAAATGCTGCCCA
Found at i:11126274 original size:47 final size:47
Alignment explanation
Indices: 11126113--11126252 Score: 253
Period size: 47 Copynumber: 3.0 Consensus size: 47
11126103 ATATATACAT
11126113 ATTTTGATGCTTAAATGCTGCCCAATTTGTTACATATATGCTGTCCA
1 ATTTTGATGCTTAAATGCTGCCCAATTTGTTACATATATGCTGTCCA
*
11126160 ATTTTGATGCTTAAATGCTGCCCAATTTGTTACATATATGCTGTCTA
1 ATTTTGATGCTTAAATGCTGCCCAATTTGTTACATATATGCTGTCCA
**
11126207 ATTTTGATGCTTAAATGCTGCCCAATTTGTTGTATATATGCTGTCC
1 ATTTTGATGCTTAAATGCTGCCCAATTTGTTACATATATGCTGTCC
11126253 GGTTTTGGTG
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 89 1.00
ACGTcount: A:0.24, C:0.18, G:0.16, T:0.42
Consensus pattern (47 bp):
ATTTTGATGCTTAAATGCTGCCCAATTTGTTACATATATGCTGTCCA
Found at i:11126291 original size:94 final size:94
Alignment explanation
Indices: 11126113--11126296 Score: 253
Period size: 94 Copynumber: 2.0 Consensus size: 94
11126103 ATATATACAT
*
11126113 ATTTTGATGCTTAAATGCTGCCCAATTTGTTACATATATGCTGTCCAATTTTGATGCTTAAATGC
1 ATTTTGATGCTTAAATGCTGCCCAATTTGTTACATATATGCTGTCCAATTTTGATGCTAAAATGC
**
11126178 TGCCCAATTTGTTACATATATGCTGTCTA
66 TGCCCAAACTGTTACATATATGCTGTCTA
** ** *
11126207 ATTTTGATGCTTAAATGCTGCCCAATTTGTTGTATATATGCTGTCCGGTTTTGGTG-TAAAAATG
1 ATTTTGATGCTTAAATGCTGCCCAATTTGTTACATATATGCTGTCCAATTTTGATGCT-AAAATG
* **
11126271 CTGCTCAAACTGTTGTATATATGCTG
65 CTGCCCAAACTGTTACATATATGCTG
11126297 CCCAAATTGT
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
93 1 0.01
94 77 0.99
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.41
Consensus pattern (94 bp):
ATTTTGATGCTTAAATGCTGCCCAATTTGTTACATATATGCTGTCCAATTTTGATGCTAAAATGC
TGCCCAAACTGTTACATATATGCTGTCTA
Found at i:11126373 original size:70 final size:71
Alignment explanation
Indices: 11126197--11126396 Score: 205
Period size: 70 Copynumber: 2.8 Consensus size: 71
11126187 TGTTACATAT
* * **
11126197 ATGCTGTCTAATTTTGATGCT-TAAATGCTGCCCAATTTGTTGTATATATGCTGTCC-GGTTTTG
1 ATGCTGTCTAACTTTG--GCTATAAATGCTGCCCAAATTGTTGTATATATGCTGTCCAAATTTTG
11126260 GTGTAAAA
64 GTGTAAAA
* * *
11126268 ATGCTGCTCAAACTGTT-G-TATATATGCTGCCCAAATTGTTGTATTTATGCTGTCCAAATTTTG
1 ATGCTG-TCTAACT-TTGGCTATAAATGCTGCCCAAATTGTTGTATATATGCTGTCCAAATTTTG
*
11126331 GTGTGAAA
64 GTGTAAAA
* * * *
11126339 ATGCTGTCTAA-TTTGGCATATAAATGCTG-TCAAATTGATGTATAAAAGCTGTCCAAAT
1 ATGCTGTCTAACTTTGGC-TATAAATGCTGCCCAAATTGTTGTATATATGCTGTCCAAAT
11126397 AGGGTAGATT
Statistics
Matches: 107, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
68 2 0.02
69 3 0.03
70 61 0.57
71 34 0.32
72 5 0.05
73 2 0.02
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (71 bp):
ATGCTGTCTAACTTTGGCTATAAATGCTGCCCAAATTGTTGTATATATGCTGTCCAAATTTTGGT
GTAAAA
Found at i:11131834 original size:103 final size:103
Alignment explanation
Indices: 11131655--11131920 Score: 390
Period size: 103 Copynumber: 2.6 Consensus size: 103
11131645 TAGCCGTTAT
* *
11131655 TGGTGGATCCCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGAT-ACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
**
11131720 AATCAGCACATAGCAACCCCCTTT-TTATTTCAAAGATA
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
11131758 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATA-CGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
*
11131823 AATTAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* * * * * **
11131862 TGGTGGATCACGCACATAGCACCACCCATAAATCAGGGAACCAGCACACAGCAACCCCT
1 TGGTGGAT-ACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
11131921 TTTATATANN
Statistics
Matches: 148, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
103 85 0.57
104 62 0.42
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.19
Consensus pattern (103 bp):
TGGTGGATACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:11137671 original size:16 final size:16
Alignment explanation
Indices: 11137650--11137682 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
11137640 CTCTGAGTTT
11137650 GAAGAATGGCTAGATG
1 GAAGAATGGCTAGATG
11137666 GAAGAATGGCTAGATG
1 GAAGAATGGCTAGATG
11137682 G
1 G
11137683 CAGATAGCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.39, T:0.18
Consensus pattern (16 bp):
GAAGAATGGCTAGATG
Found at i:11137682 original size:8 final size:8
Alignment explanation
Indices: 11137655--11137711 Score: 57
Period size: 8 Copynumber: 7.2 Consensus size: 8
11137645 AGTTTGAAGA
11137655 ATGGCTAG
1 ATGGCTAG
*
11137663 ATGG-AAG
1 ATGGCTAG
11137670 AATGGCTAG
1 -ATGGCTAG
11137679 ATGGC-AG
1 ATGGCTAG
*
11137686 ATAGCTAG
1 ATGGCTAG
11137694 AATGGCTAG
1 -ATGGCTAG
11137703 ATGGC-AG
1 ATGGCTAG
11137710 AT
1 AT
11137712 TTCTTGGCTA
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
7 12 0.29
8 20 0.49
9 9 0.22
ACGTcount: A:0.33, C:0.11, G:0.35, T:0.21
Consensus pattern (8 bp):
ATGGCTAG
Found at i:11140901 original size:44 final size:44
Alignment explanation
Indices: 11140853--11141501 Score: 216
Period size: 44 Copynumber: 14.8 Consensus size: 44
11140843 TAGAGTGTAG
*
11140853 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGA
* * ** *
11140897 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACCA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGGCGA
* * * * * * * * *
11140940 AGCCTTGTCTTCCTGAGCAGCAGTGGAGAAGGTTGTAGA-GTG-TA
1 A-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACG-GCGA
*
11140984 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGTGA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGA
* * ** *
11141029 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACCA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGGCGA
* * * * * * * ** *
11141072 AGCCTTGTTTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTG-TA
1 A-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGA
*
11141116 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGA
* * ** *
11141161 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACCA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGGCGA
* * * * ** * *
11141204 AGCCTTGTCTCCCTGAGCAGCAGTGGAAAAGGA-TGTAGA-GTG-TA
1 A-TCTTATCTCCCTAAGCAGTAGTGGAGCA-GATTGAAGACG-GCGA
* * *
11141248 GATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGATGGCGA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGA
* * ** *
11141293 ATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACCA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGGCGA
** * * * * * ** * *
11141336 GGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGATCGAAGATTGTGG
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGA
* *
11141381 ATCTTATTTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGA
* * ** *
11141425 ATCTTATCTTTCC-AAG-A-TAGTAGGAAGCAGATTTAAG-CCACCA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGGCGA
* * *
11141468 AGCCTTATCTCCCTAAGCAGTTGTGGAGTAGATT
1 A-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATT
11141502 AAAGCCAACA
Statistics
Matches: 426, Mismatches: 128, Indels: 102
0.65 0.20 0.16
Matches are distributed among these distances:
42 20 0.05
43 50 0.12
44 301 0.71
45 40 0.09
46 15 0.04
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGGCGA
Found at i:11140978 original size:132 final size:132
Alignment explanation
Indices: 11140741--11141487 Score: 1287
Period size: 132 Copynumber: 5.7 Consensus size: 132
11140731 CTGCATTGAC
* *
11140741 AGTGGAGCAGATCGAATACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
*
11140806 CAAGCCTTGTCTCCCTGAGCAGCAGTAGAGAAGGTTGTAGAGTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGTAGAGTGTAGATCTTATCTCCCTAAGCA
11140871 GT
131 GT
11140873 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
*
11140938 CAAGCCTTGTCTTCCTGAGCAGCAGTGGAGAAGGTTGTAGAGTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGTAGAGTGTAGATCTTATCTCCCTAAGCA
11141003 GT
131 GT
* *
11141005 AGTGGAGCAGATTGAAGACGGTGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * *
11141070 CAAGCCTTGTTTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGTAGAGTGTAGATCTTATCTCCCTAAGCA
11141135 GT
131 GT
11141137 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * *
11141202 CAAGCCTTGTCTCCCTGAGCAGCAGTGGAAAAGGATGTAGAGTGTAGATCTTATCTCCCTAAGAA
66 CAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGTAGAGTGTAGATCTTATCTCCCTAAGCA
11141267 GT
131 GT
*
11141269 AGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * * * * * *
11141334 CAGGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGATCGAAGATTGTGGATCTTATTTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGTAGAGTGTAGATCTTATCTCCCTAAGCA
11141399 GT
131 GT
*
11141401 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTAGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* *
11141466 CAAGCCTTATCTCCCTAAGCAG
66 CAAGCCTTGTCTCCCTGAGCAG
11141488 TTGTGGAGTA
Statistics
Matches: 581, Mismatches: 34, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 581 1.00
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
CAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGTAGAGTGTAGATCTTATCTCCCTAAGCA
GT
Found at i:11146805 original size:2 final size:2
Alignment explanation
Indices: 11146798--11146850 Score: 97
Period size: 2 Copynumber: 26.0 Consensus size: 2
11146788 ATAAATTATG
11146798 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11146840 AT AT ACT AT AT
1 AT AT A-T AT AT
11146851 TATGAATGAG
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 48 0.96
3 2 0.04
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Done.