Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62769430
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1067035 characters in sequence are not A, C, G, or T
File 50 of 206
Found at i:14303013 original size:43 final size:42
Alignment explanation
Indices: 14302937--14303082 Score: 136
Period size: 42 Copynumber: 3.5 Consensus size: 42
14302927 TTCCCCGAGG
* * *** * *
14302937 GGTTACTAAGTACTGATTCCCTAAATTATTGATTCTAAAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATCATTGATTATAAAGGT
* *
14302979 GGTTGCTAAGTGCT-AGTTCCACCGTATCCTTGATTGTGAAAGG-
1 GGTTGCTAAGTGCTGA-TTCC-CCGTATCATTGATTAT-AAAGGT
* *
14303022 GGTTGCTATGTGCTGATTCCCCGTATCATTGAATAT-AAGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATCATTGATTATAAAGGT
*
14303063 GGTTGCTAAGTGTTGATTCC
1 GGTTGCTAAGTGCTGATTCC
14303083 ACCAAGTAAC
Statistics
Matches: 85, Mismatches: 14, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
40 4 0.05
41 19 0.22
42 29 0.34
43 27 0.32
44 6 0.07
ACGTcount: A:0.23, C:0.16, G:0.24, T:0.36
Consensus pattern (42 bp):
GGTTGCTAAGTGCTGATTCCCCGTATCATTGATTATAAAGGT
Found at i:14303080 original size:41 final size:43
Alignment explanation
Indices: 14302972--14303085 Score: 137
Period size: 41 Copynumber: 2.7 Consensus size: 43
14302962 TTATTGATTC
* * *
14302972 TAAAGGTGGTTGCTAAGTGCT-AGTTCCACCGTATCCTTGATTG
1 TAAAGGTGGTTGCTAAGTGCTGA-TTCCACCGTATCATTGAATA
*
14303015 TGAAAGG-GGTTGCTATGTGCTGATTCC-CCGTATCATTGAATA
1 T-AAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCATTGAATA
*
14303057 T-AAGGTGGTTGCTAAGTGTTGATTCCACC
1 TAAAGGTGGTTGCTAAGTGCTGATTCCACC
14303086 AAGTAACACT
Statistics
Matches: 61, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
40 4 0.07
41 18 0.30
42 15 0.25
43 18 0.30
44 6 0.10
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (43 bp):
TAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCATTGAATA
Found at i:14314139 original size:52 final size:52
Alignment explanation
Indices: 14314082--14314180 Score: 126
Period size: 52 Copynumber: 1.9 Consensus size: 52
14314072 GAGGTACAAT
* * * *
14314082 TTTAAGTTTTATAGATTATGGATTAGGGATTCTGGTTTAAGGGTTAATGTGA
1 TTTAAGGTTTATAGATTAGGGATTAGGGATTATGGGTTAAGGGTTAATGTGA
* * * *
14314134 TTTAAGGTTTATGGATTAGGGGTTAGGGGTTATGGGTTAGGGGTTAA
1 TTTAAGGTTTATAGATTAGGGATTAGGGATTATGGGTTAAGGGTTAA
14314181 GGGTTAGGTT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
52 39 1.00
ACGTcount: A:0.24, C:0.01, G:0.33, T:0.41
Consensus pattern (52 bp):
TTTAAGGTTTATAGATTAGGGATTAGGGATTATGGGTTAAGGGTTAATGTGA
Found at i:14314159 original size:7 final size:7
Alignment explanation
Indices: 14314149--14314199 Score: 70
Period size: 7 Copynumber: 7.6 Consensus size: 7
14314139 GGTTTATGGA
14314149 TTAGGGG
1 TTAGGGG
14314156 TTAGGGG
1 TTAGGGG
*
14314163 TTATGGG
1 TTAGGGG
14314170 TTAGGGG
1 TTAGGGG
*
14314177 TTAAGGG
1 TTAGGGG
14314184 TTA--GG
1 TTAGGGG
14314189 TTAGGGG
1 TTAGGGG
14314196 TTAG
1 TTAG
14314200 ATGTTAAGAG
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
5 5 0.13
7 34 0.87
ACGTcount: A:0.18, C:0.00, G:0.49, T:0.33
Consensus pattern (7 bp):
TTAGGGG
Found at i:14314168 original size:21 final size:20
Alignment explanation
Indices: 14314142--14314199 Score: 82
Period size: 21 Copynumber: 2.9 Consensus size: 20
14314132 GATTTAAGGT
14314142 TTATGGATTAGGGGTTAGGGG
1 TTATGG-TTAGGGGTTAGGGG
*
14314163 TTATGGGTTAGGGGTTAAGGG
1 TTAT-GGTTAGGGGTTAGGGG
14314184 TTA-GGTTAGGGGTTAG
1 TTATGGTTAGGGGTTAG
14314200 ATGTTAAGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 12 0.35
21 20 0.59
22 2 0.06
ACGTcount: A:0.19, C:0.00, G:0.47, T:0.34
Consensus pattern (20 bp):
TTATGGTTAGGGGTTAGGGG
Found at i:14314172 original size:14 final size:14
Alignment explanation
Indices: 14314153--14314215 Score: 67
Period size: 14 Copynumber: 4.6 Consensus size: 14
14314143 TATGGATTAG
*
14314153 GGGTTAGGGGTTAT
1 GGGTTAGGGGTTAA
14314167 GGGTTAGGGGTTAA
1 GGGTTAGGGGTTAA
*
14314181 GGGTTA--GGTTAG
1 GGGTTAGGGGTTAA
**
14314193 GGGTTAGATGTTAA
1 GGGTTAGGGGTTAA
*
14314207 GAGTTAGGG
1 GGGTTAGGG
14314216 TTTAGGATTT
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
12 11 0.28
14 29 0.73
ACGTcount: A:0.21, C:0.00, G:0.48, T:0.32
Consensus pattern (14 bp):
GGGTTAGGGGTTAA
Found at i:14314196 original size:26 final size:26
Alignment explanation
Indices: 14314161--14314214 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
14314151 AGGGGTTAGG
* * *
14314161 GGTTATGGGTTAGGGGTTAAGGGTTA
1 GGTTAGGGGTTAGAGGTTAAGAGTTA
*
14314187 GGTTAGGGGTTAGATGTTAAGAGTTA
1 GGTTAGGGGTTAGAGGTTAAGAGTTA
14314213 GG
1 GG
14314215 GTTTAGGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.22, C:0.00, G:0.44, T:0.33
Consensus pattern (26 bp):
GGTTAGGGGTTAGAGGTTAAGAGTTA
Found at i:14314221 original size:33 final size:33
Alignment explanation
Indices: 14314154--14314217 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 33
14314144 ATGGATTAGG
* *
14314154 GGTTAGGGGTTATGGGTTAGGGGTTAAGGGTTA
1 GGTTAGGGGTTATGGGTTAAGAGTTAAGGGTTA
*
14314187 GGTTAGGGGTTA-GATGTTAAGAGTT-AGGGTT
1 GGTTAGGGGTTATG-GGTTAAGAGTTAAGGGTT
14314218 TAGGATTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 7 0.26
33 20 0.74
ACGTcount: A:0.20, C:0.00, G:0.45, T:0.34
Consensus pattern (33 bp):
GGTTAGGGGTTATGGGTTAAGAGTTAAGGGTTA
Found at i:14315109 original size:10 final size:10
Alignment explanation
Indices: 14315094--14315118 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14315084 TCGAAAATTG
14315094 CAAAATTGTT
1 CAAAATTGTT
14315104 CAAAATTGTT
1 CAAAATTGTT
14315114 CAAAA
1 CAAAA
14315119 CCATGTCGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.12, G:0.08, T:0.32
Consensus pattern (10 bp):
CAAAATTGTT
Found at i:14315892 original size:18 final size:19
Alignment explanation
Indices: 14315869--14315912 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
14315859 CAGAAATTTC
*
14315869 TGTTTCTCTAGCA-TGTTA
1 TGTTTCTCTACCATTGTTA
* *
14315887 TGTTTCTGTACCATTTTTA
1 TGTTTCTCTACCATTGTTA
14315906 TGTTTCT
1 TGTTTCT
14315913 TTATTTTCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.14, C:0.16, G:0.14, T:0.57
Consensus pattern (19 bp):
TGTTTCTCTACCATTGTTA
Found at i:14315926 original size:7 final size:7
Alignment explanation
Indices: 14315916--14316002 Score: 84
Period size: 7 Copynumber: 12.3 Consensus size: 7
14315906 TGTTTCTTTA
*
14315916 TTTTCTA
1 TTTTCTG
*
14315923 TTTTTTG
1 TTTTCTG
*
14315930 TTTACTG
1 TTTTCTG
14315937 TTTTCTG
1 TTTTCTG
14315944 TTTTCTG
1 TTTTCTG
**
14315951 CATTCTG
1 TTTTCTG
14315958 TTTTCTG
1 TTTTCTG
**
14315965 TTTTCAA
1 TTTTCTG
*
14315972 TTTTTTG
1 TTTTCTG
14315979 TTTTCTG
1 TTTTCTG
*
14315986 TTTTGCTA
1 TTTT-CTG
14315994 TTTTCTG
1 TTTTCTG
14316001 TT
1 TT
14316003 GAATGAAGTG
Statistics
Matches: 62, Mismatches: 17, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
7 56 0.90
8 6 0.10
ACGTcount: A:0.07, C:0.13, G:0.11, T:0.69
Consensus pattern (7 bp):
TTTTCTG
Found at i:14318355 original size:42 final size:42
Alignment explanation
Indices: 14318308--14318597 Score: 429
Period size: 42 Copynumber: 6.9 Consensus size: 42
14318298 TGTAAAAAAA
* * *
14318308 CGCCGCTAAACATCATGTTCTTTAGCGGCATTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTTTTCTAAG
* *
14318350 CGCCGCTAAAGAACATGGTCTTTAGCAGC-GTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTTTTCTAAG
* *
14318391 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTCCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTTTTCTAAG
*
14318433 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTTTTCTAAG
* * *
14318475 CGCCGCTAAATAACATGTTCTTTAGCGGCATTTTTTTTTCAAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCA--TTTTTTTCTAAG
* * *
14318519 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCAAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTTTTCTAAG
14318561 CGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTTTT
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTTTT
14318598 TTGTAAACGC
Statistics
Matches: 228, Mismatches: 17, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
41 39 0.17
42 150 0.66
44 39 0.17
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTTTTCTAAG
Found at i:14318552 original size:128 final size:125
Alignment explanation
Indices: 14318308--14318597 Score: 445
Period size: 128 Copynumber: 2.3 Consensus size: 125
14318298 TGTAAAAAAA
* * *
14318308 CGCCGCTAAACATCATGTTCTTTAGCGGCATTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTT
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTT
* *
14318373 AGCAGCGTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTCCTAAG
66 AGCAGCGTTTTTTCAAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTCCAAAG
* * *
14318433 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAATAACATGTTCTTT
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTT
* * * *
14318498 AGCGGCATTTTTTTTTCAAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCAAAG
66 AGCAGC---GTTTTTTCAAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTCCAAAG
14318561 CGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTTTT
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTTTT
14318598 TTGTAAACGC
Statistics
Matches: 149, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
125 64 0.43
128 85 0.57
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (125 bp):
CGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTT
AGCAGCGTTTTTTCAAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTCCAAAG
Found at i:14318599 original size:86 final size:85
Alignment explanation
Indices: 14318308--14318598 Score: 453
Period size: 86 Copynumber: 3.4 Consensus size: 85
14318298 TGTAAAAAAA
* * *
14318308 CGCCGCTAAACATCATGTTCTTTAGCGGCA-TTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTT
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTT
*
14318372 TAGCAGCG-TTTTTTCTAAG
66 TAGCGGCGTTTTTTTCTAAG
* *
14318391 CGCCGCTAAAGAACATGGTCTTTAGCGGC-GTTTTTTCCTAAGCGCCGCTAAAGAACATGGTCTT
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTT
14318455 TAGCGGCGTTTTTTTCTAAG
66 TAGCGGCGTTTTTTTCTAAG
* * * *
14318475 CGCCGCTAAATAACATGTTCTTTAGCGGCATTTTTTTTTCAAAGCGCCGCTAAAGAACATGTTCT
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCA-TTTTTTTTCTAAGCGCCGCTAAAGAACATGGTCT
*
14318540 TTAGCGGCGTTTTTTTCAAAG
65 TTAGCGGCGTTTTTTTCTAAG
14318561 CGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTTTTT
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTTTTT
14318599 TGTAAACGCT
Statistics
Matches: 190, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
83 66 0.35
84 38 0.20
85 8 0.04
86 78 0.41
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.35
Consensus pattern (85 bp):
CGCCGCTAAAGAACATGGTCTTTAGCGGCATTTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTT
TAGCGGCGTTTTTTTCTAAG
Found at i:14322695 original size:4 final size:4
Alignment explanation
Indices: 14322686--14322711 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
14322676 CCGAAGAAAC
14322686 AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AA
14322712 TTTTGAGAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:14329882 original size:68 final size:72
Alignment explanation
Indices: 14329806--14329972 Score: 225
Period size: 68 Copynumber: 2.3 Consensus size: 72
14329796 ACTTTTTAAC
* * *
14329806 TTTAAATATTTAAATTTGATATTATATATGTTTGTTTTATCTATTTCTTTA-T-TT-GTTATTCT
1 TTTAAATATTTAAATTTGATATTATATATATTTGTTTTATCTATTTATTTATTATTCATTATTCT
14329868 TTTAC-T
66 TTTACTT
* * *
14329874 TTTAAATATTTAAATTTAATATTATGTATATTTGTTTTATTTATTTATTTATTTATTCATTATTC
1 TTTAAATATTTAAATTTGATATTATATATATTTGTTTTATCTATTTATTTA-TTATTCATTATTC
14329939 TTTTACTT
65 TTTTACTT
*
14329947 TTTAAATATGTAAAATTTGATATTAT
1 TTTAAATAT-TTAAATTTGATATTAT
14329973 TTAGAGCTCT
Statistics
Matches: 85, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
68 46 0.54
70 1 0.01
71 2 0.02
72 12 0.14
73 10 0.12
74 14 0.16
ACGTcount: A:0.29, C:0.04, G:0.05, T:0.62
Consensus pattern (72 bp):
TTTAAATATTTAAATTTGATATTATATATATTTGTTTTATCTATTTATTTATTATTCATTATTCT
TTTACTT
Found at i:14332221 original size:51 final size:51
Alignment explanation
Indices: 14332107--14332340 Score: 345
Period size: 51 Copynumber: 4.7 Consensus size: 51
14332097 CTTACATATG
* *
14332107 ATCACTTATCACTTGTCCCTGATCAGATAAGTGTAGCT-AAGCTACCACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
* * *
14332157 ATCACTTGCCACTTGTCACTGATCAGATAAGTGTAACTAAAGCTACTACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
*
14332208 ATCACTTGTCACTTGTCACTGATCAGATAACTGTAGCTAAAGCTACCACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
*
14332259 ATCACTTGTCACTTGTCACCGATCAG---A-TGTAGCTAAAGCTACCACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
* *
14332306 ATCACTTGCCACATGTCACT-ATCAGATAAGTGTAG
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAG
14332341 TTAATAAGTA
Statistics
Matches: 166, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
46 5 0.03
47 37 0.22
48 1 0.01
49 1 0.01
50 39 0.23
51 83 0.50
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (51 bp):
ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTT
Found at i:14332285 original size:102 final size:97
Alignment explanation
Indices: 14332107--14332340 Score: 335
Period size: 98 Copynumber: 2.4 Consensus size: 97
14332097 CTTACATATG
* *
14332107 ATCACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTGCCACTTG
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTGCCACTTG
* *
14332172 TCACTGATCAGATAAGTGTAACTAAAGCTACTACTT
66 TCACCGATCAG---A-TGTAACTAAAGCTACCACTT
* *
14332208 ATCACTTGTCACTTGTCACTGATCAGATAACTGTAGCTAAAGCTACCACTTATCACTTGTCACTT
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCACTTGCCACTT
*
14332273 GTCACCGATCAGATGTAGCTAAAGCTACCACTT
65 GTCACCGATCAGATGTAACTAAAGCTACCACTT
* *
14332306 ATCACTTGCCACATGTCACT-ATCAGATAAGTGTAG
1 ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAG
14332341 TTAATAAGTA
Statistics
Matches: 122, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
97 14 0.11
98 36 0.30
99 1 0.01
101 35 0.29
102 36 0.30
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (97 bp):
ATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTGCCACTTG
TCACCGATCAGATGTAACTAAAGCTACCACTT
Found at i:14334854 original size:23 final size:23
Alignment explanation
Indices: 14334828--14334903 Score: 125
Period size: 23 Copynumber: 3.3 Consensus size: 23
14334818 ATAAGTGCCA
14334828 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
14334851 CACTAATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
14334874 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
14334897 CACTGAT
1 CACTGAT
14334904 CAATAACACT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:14336518 original size:68 final size:68
Alignment explanation
Indices: 14336415--14336747 Score: 533
Period size: 68 Copynumber: 4.8 Consensus size: 68
14336405 TTGTTTTATC
14336415 TATCTATTTATTTATTTGTTATTCTTTTACTTTTAAATATTTAAATTTGATATTATCTATATTTG
1 TATCTATTTATTTATTTGTTATTCTTTTACTTTTAAATATTTAAATTTGATATTATCTATATTTG
14336480 TTT
66 TTT
* *
14336483 TATCCATTTATTTATTTTTTATTCTTTTACTTTTAAATATTTAAATTTGATATTATCTATATTTG
1 TATCTATTTATTTATTTGTTATTCTTTTACTTTTAAATATTTAAATTTGATATTATCTATATTTG
14336548 TTT
66 TTT
* *
14336551 TATCTATTTATTTATTTGTTATTATTTTACTTTTAAATATTTAAATTTGATATTTTCTATATTTT
1 TATCTATTTATTTATTTGTTATTCTTTTACTTTTAAATATTTAAATTTGATATTATCTATA--TT
*
14336616 TCTTAT
64 TGTT-T
*
14336622 CTATCTATTTATTTATTTGTTATT-ATTTACTTTTAAATATTTAAATTTGATATTATCTATATTT
1 -TATCTATTTATTTATTTGTTATTCTTTTACTTTTAAATATTTAAATTTGATATTATCTATATTT
14336686 GTTT
65 GTTT
* *
14336690 TATCTATTTATTTATTCGTTATTCTTTTACTTTTAAAATATTTAAAATTTGATGTTAT
1 TATCTATTTATTTATTTGTTATTCTTTTACTTTT-AAATATTT-AAATTTGATATTAT
14336748 TTGTATTTCC
Statistics
Matches: 245, Mismatches: 13, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
67 22 0.09
68 133 0.54
69 13 0.05
70 18 0.07
71 36 0.15
72 23 0.09
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.62
Consensus pattern (68 bp):
TATCTATTTATTTATTTGTTATTCTTTTACTTTTAAATATTTAAATTTGATATTATCTATATTTG
TTT
Found at i:14336699 original size:139 final size:136
Alignment explanation
Indices: 14336415--14336747 Score: 535
Period size: 139 Copynumber: 2.4 Consensus size: 136
14336405 TTGTTTTATC
14336415 TATCTATTTATTTATTTGTTATTCTTTTACTTTTAAATATTTAAATTTGATATTATCTATATTTG
1 TATCTATTTATTTATTTGTTATTCTTTTACTTTTAAATATTTAAATTTGATATTATCTATATTTG
* *
14336480 TTTTATCCATTTATTTATTTTTTATTCTTTTACTTTTAAATATTTAAATTTGATATTATCTATAT
66 TTTTATCCATTTATTTATTTGTTATTCATTTACTTTTAAATATTTAAATTTGATATTATCTATAT
14336545 TTGTTT
131 TTGTTT
* *
14336551 TATCTATTTATTTATTTGTTATTATTTTACTTTTAAATATTTAAATTTGATATTTTCTATATTT-
1 TATCTATTTATTTATTTGTTATTCTTTTACTTTTAAATATTTAAATTTGATATTATCTATATTTG
14336615 TTCTTATCTATCTATTTATTTATTTGTTATT-ATTTACTTTTAAATATTTAAATTTGATATTATC
66 TT-TTATC---C-ATTTATTTATTTGTTATTCATTTACTTTTAAATATTTAAATTTGATATTATC
14336679 TATATTTGTTT
126 TATATTTGTTT
* *
14336690 TATCTATTTATTTATTCGTTATTCTTTTACTTTTAAAATATTTAAAATTTGATGTTAT
1 TATCTATTTATTTATTTGTTATTCTTTTACTTTT-AAATATTT-AAATTTGATATTAT
14336748 TTGTATTTCC
Statistics
Matches: 182, Mismatches: 8, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
135 2 0.01
136 67 0.37
139 76 0.42
140 25 0.14
141 12 0.07
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.62
Consensus pattern (136 bp):
TATCTATTTATTTATTTGTTATTCTTTTACTTTTAAATATTTAAATTTGATATTATCTATATTTG
TTTTATCCATTTATTTATTTGTTATTCATTTACTTTTAAATATTTAAATTTGATATTATCTATAT
TTGTTT
Found at i:14338809 original size:74 final size:73
Alignment explanation
Indices: 14338609--14338922 Score: 319
Period size: 72 Copynumber: 4.3 Consensus size: 73
14338599 ATCAAGGCTT
* * * *
14338609 TAGCGGCGTTTCTAAGAAAGCGCCG-AAAGCAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
1 TAGCGGCGTTTTTAGGAAAGCGCCGCAAA-AAAACCTAAACCCAACGACGCCGTTTTCTGAGCTT
* *
14338673 TTGGGGATT
65 TCGGGGATA
* * * * *
14338682 TAGCGGCG-TTTTGGGAAAGCGCCGCAAAAAGACCTAAGCCCAACGATGCCGTTTTTTGAGCTTT
1 TAGCGGCGTTTTTAGGAAAGCGCCGCAAAAAAACCTAAACCCAACGACGCCGTTTTCTGAGCTTT
*
14338746 CGTGGATA
66 CGGGGATA
* * * * *
14338754 TAGTGGCGTTTTTAAGAAAGCTCCGCAAAAAAAACCTAAACCCAACGACGTCGTTTTCTGATCTT
1 TAGCGGCGTTTTTAGGAAAGCGCCGC-AAAAAAACCTAAACCCAACGACGCCGTTTTCTGAGCTT
* *
14338819 TTGGGGATT
65 TCGGGGATA
* * ** * * *
14338828 TAGCGGCGTTTTTGGGAAAGCGCCGC-TAAAAACCTAAACGAAACGATGTCGTTTTTTTGAGCTT
1 TAGCGGCGTTTTTAGGAAAGCGCCGCAAAAAAACCTAAACCCAACGACGCCG-TTTTCTGAGCTT
*
14338892 TCGTGGATA
65 TCGGGGATA
* *
14338901 CAACGGCGTTTTTAGGAAAGCG
1 TAGCGGCGTTTTTAGGAAAGCG
14338923 TCACTAATGC
Statistics
Matches: 198, Mismatches: 39, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
72 78 0.39
73 60 0.30
74 60 0.30
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (73 bp):
TAGCGGCGTTTTTAGGAAAGCGCCGCAAAAAAACCTAAACCCAACGACGCCGTTTTCTGAGCTTT
CGGGGATA
Found at i:14338883 original size:146 final size:146
Alignment explanation
Indices: 14338612--14338922 Score: 446
Period size: 146 Copynumber: 2.1 Consensus size: 146
14338602 AAGGCTTTAG
* ** *
14338612 CGGCGTTTCTAAGAAAGCGCCGAAAGCAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTTGG
1 CGGCGTTTTTAAGAAAGCGCCGAAAAAAAACCTAAACCCAACGACGCCGTTTTCTGAGCTTTTGG
* *
14338677 GGATTTAGCGGCGTTTTGGGAAAGCGCCGCAAAAAGACCTAAGCCCAACGATGCCG-TTTTTTGA
66 GGATTTAGCGGCGTTTTGGGAAAGCGCCGCAAAAAGACCTAAACCAAACGATGCCGTTTTTTTGA
* *
14338741 GCTTTCGTGGATATAG
131 GCTTTCGTGGATACAA
* * * *
14338757 TGGCGTTTTTAAGAAAGCTCCGCAAAAAAAACCTAAACCCAACGACGTCGTTTTCTGATCTTTTG
1 CGGCGTTTTTAAGAAAGCGCCG-AAAAAAAACCTAAACCCAACGACGCCGTTTTCTGAGCTTTTG
* * *
14338822 GGGATTTAGCGGCGTTTTTGGGAAAGCGCCGCTAAAA-ACCTAAACGAAACGATGTCGTTTTTTT
65 GGGATTTAGCGGCG-TTTTGGGAAAGCGCCGCAAAAAGACCTAAACCAAACGATGCCGTTTTTTT
14338886 GAGCTTTCGTGGATACAA
129 GAGCTTTCGTGGATACAA
*
14338904 CGGCGTTTTTAGGAAAGCG
1 CGGCGTTTTTAAGAAAGCG
14338923 TCACTAATGC
Statistics
Matches: 145, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
145 19 0.13
146 67 0.46
147 59 0.41
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (146 bp):
CGGCGTTTTTAAGAAAGCGCCGAAAAAAAACCTAAACCCAACGACGCCGTTTTCTGAGCTTTTGG
GGATTTAGCGGCGTTTTGGGAAAGCGCCGCAAAAAGACCTAAACCAAACGATGCCGTTTTTTTGA
GCTTTCGTGGATACAA
Found at i:14339026 original size:114 final size:114
Alignment explanation
Indices: 14338826--14339049 Score: 265
Period size: 114 Copynumber: 2.0 Consensus size: 114
14338816 CTTTTGGGGA
* * * *
14338826 TTTAGCGGCGTTTTTGGGAAAGCGCCGCTAAAAACCTAAACGAAACGATGTCGTTTTTTTGAGCT
1 TTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAACCTAAACGAAACGATGCCGTTTTTCTGAGCT
* *
14338891 TTCGTGGATACAACGGCGTTTTTAGGAAAGCGTCACTAATGCTCAGGGC
66 TTAGTGGATACAACGGCGTTTTTAGGAAAGCGCCACTAATGCTCAGGGC
* * *
14338940 TTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGC-ACAACGGTGCCG-TTTTCTGAT
1 TTTAGCGGCGTTTTTGGAAAAGCGCCGC-AAAAAACCTAAACGA-AACGATGCCGTTTTTCTGAG
* ** * * *
14339003 CTTTTAG-GGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCTAATGCTCA
64 C-TTTAGTGGATACAACGGCGTTTTTAGGAAAGCGCCACTAATGCTCA
14339050 AATAGTTTAA
Statistics
Matches: 92, Mismatches: 15, Indels: 6
0.81 0.13 0.05
Matches are distributed among these distances:
114 69 0.75
115 23 0.25
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.29
Consensus pattern (114 bp):
TTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAACCTAAACGAAACGATGCCGTTTTTCTGAGCT
TTAGTGGATACAACGGCGTTTTTAGGAAAGCGCCACTAATGCTCAGGGC
Found at i:14339064 original size:10 final size:10
Alignment explanation
Indices: 14339049--14339073 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14339039 GCTAATGCTC
14339049 AAATAGTTTA
1 AAATAGTTTA
14339059 AAATAGTTTA
1 AAATAGTTTA
14339069 AAATA
1 AAATA
14339074 TTTGTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (10 bp):
AAATAGTTTA
Found at i:14339111 original size:15 final size:15
Alignment explanation
Indices: 14339091--14339120 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14339081 AAATGAAAAT
14339091 TTTAAAATACTATTA
1 TTTAAAATACTATTA
*
14339106 TTTAAAATAGTATTA
1 TTTAAAATACTATTA
14339121 AAGTTTTTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (15 bp):
TTTAAAATACTATTA
Found at i:14339281 original size:22 final size:21
Alignment explanation
Indices: 14339255--14339322 Score: 73
Period size: 22 Copynumber: 3.1 Consensus size: 21
14339245 TAGTGTGTAA
14339255 GGGTTAGGAGCTTATGGTTTAG
1 GGGTTAGG-GCTTATGGTTTAG
* * *
14339277 GGGTTATGGGCTTAGGGTCTAT
1 GGGTTA-GGGCTTATGGTTTAG
*
14339299 GGGTTAATGGCTTATGGTTTAG
1 GGGTT-AGGGCTTATGGTTTAG
14339321 GG
1 GG
14339323 TTTAATCAAG
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
22 34 0.92
23 3 0.08
ACGTcount: A:0.16, C:0.06, G:0.41, T:0.37
Consensus pattern (21 bp):
GGGTTAGGGCTTATGGTTTAG
Found at i:14339327 original size:22 final size:22
Alignment explanation
Indices: 14339264--14339458 Score: 75
Period size: 22 Copynumber: 8.7 Consensus size: 22
14339254 AGGGTTAGGA
*
14339264 GCTTATGGTTTAGGGGTT-ATGG
1 GCTTATGGTTTAGGGTTTAAT-G
* *
14339286 GCTTAGGGTCTATGGG-TTAATG
1 GCTTATGGTTTA-GGGTTTAATG
14339308 GCTTATGGTTTAGGGTTTAATCAAG
1 GCTTATGGTTTAGGGTTTAAT---G
* *
14339333 AGTTTATGATTTAGGGGTTT-AT-
1 -GCTTATGGTTTA-GGGTTTAATG
* * *
14339355 GCTTTAGAGGTTTAAGGTTTAAAG
1 GC-TTA-TGGTTTAGGGTTTAATG
*
14339379 GTTTATGGTTTAGGGGTTT-A-G
1 GCTTATGGTTTA-GGGTTTAATG
* * *
14339400 G-TTATCGTCTTAGGGTCTAAAG
1 GCTTATGGT-TTAGGGTTTAATG
* *
14339422 G-TTATTGGTTTACGGTTTAGT-
1 GCTTA-TGGTTTAGGGTTTAATG
* *
14339443 GTTTACGGTTTAGGGT
1 GCTTATGGTTTAGGGT
14339459 GTAGGTTTAT
Statistics
Matches: 132, Mismatches: 23, Indels: 37
0.69 0.12 0.19
Matches are distributed among these distances:
20 11 0.08
21 20 0.15
22 59 0.45
23 22 0.17
24 1 0.01
25 1 0.01
26 12 0.09
27 6 0.05
ACGTcount: A:0.19, C:0.06, G:0.32, T:0.43
Consensus pattern (22 bp):
GCTTATGGTTTAGGGTTTAATG
Found at i:14339354 original size:15 final size:15
Alignment explanation
Indices: 14339334--14339402 Score: 77
Period size: 15 Copynumber: 4.7 Consensus size: 15
14339324 TTAATCAAGA
* *
14339334 GTTTATGATTTAGGG
1 GTTTATGGTTTAGAG
*
14339349 GTTTATGCTTTAGAG
1 GTTTATGGTTTAGAG
* *
14339364 GTTTAAGGTTTAAAG
1 GTTTATGGTTTAGAG
*
14339379 GTTTATGGTTTAGGG
1 GTTTATGGTTTAGAG
14339394 GTTTA-GGTT
1 GTTTATGGTT
14339403 ATCGTCTTAG
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
14 4 0.09
15 42 0.91
ACGTcount: A:0.20, C:0.01, G:0.32, T:0.46
Consensus pattern (15 bp):
GTTTATGGTTTAGAG
Found at i:14339446 original size:14 final size:14
Alignment explanation
Indices: 14339429--14339455 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14339419 AAGGTTATTG
14339429 GTTTACGGTTTAGT
1 GTTTACGGTTTAGT
14339443 GTTTACGGTTTAG
1 GTTTACGGTTTAG
14339456 GGTGTAGGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.07, G:0.30, T:0.48
Consensus pattern (14 bp):
GTTTACGGTTTAGT
Found at i:14339454 original size:21 final size:20
Alignment explanation
Indices: 14339428--14339473 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
14339418 AAAGGTTATT
*
14339428 GGTTTACGGTTTAGTGTTTAC
1 GGTTTACGGTGTAG-GTTTAC
* *
14339449 GGTTTAGGGTGTAGGTTTAT
1 GGTTTACGGTGTAGGTTTAC
14339469 GGTTT
1 GGTTT
14339474 TAAGTATGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.13, C:0.04, G:0.35, T:0.48
Consensus pattern (20 bp):
GGTTTACGGTGTAGGTTTAC
Found at i:14339456 original size:43 final size:43
Alignment explanation
Indices: 14339363--14339473 Score: 108
Period size: 43 Copynumber: 2.6 Consensus size: 43
14339353 ATGCTTTAGA
* * *
14339363 GGTTTAAGGTTTAAAGGTTTATGGTTTAGGGGTTTAGGTTATC
1 GGTTTAGGGTCTAAAGGTTTATGGTTTAGCGGTTTAGGTTATC
14339406 -GTCTTAGGGTCTAAAGG-TTATTGGTTTA-CGGTTTAGTGTT-TAC
1 GGT-TTAGGGTCTAAAGGTTTA-TGGTTTAGCGGTTTAG-GTTAT-C
*
14339449 GGTTTAGGGTGT--AGGTTTATGGTTT
1 GGTTTAGGGTCTAAAGGTTTATGGTTT
14339474 TAAGTATGCA
Statistics
Matches: 58, Mismatches: 4, Indels: 14
0.76 0.05 0.18
Matches are distributed among these distances:
41 9 0.16
42 16 0.28
43 31 0.53
44 2 0.03
ACGTcount: A:0.18, C:0.05, G:0.32, T:0.45
Consensus pattern (43 bp):
GGTTTAGGGTCTAAAGGTTTATGGTTTAGCGGTTTAGGTTATC
Found at i:14339515 original size:28 final size:26
Alignment explanation
Indices: 14339483--14339572 Score: 81
Period size: 28 Copynumber: 3.2 Consensus size: 26
14339473 TTAAGTATGC
14339483 AGTTTATGATTTAGTGTTAAGAGTTTAG
1 AGTTTATG-TTTAGTGTT-AGAGTTTAG
* * *
14339511 TGTTTATGGTTTAGGGTGTAGGGTTTAG
1 AGTTTAT-GTTTAGTGT-TAGAGTTTAG
* *
14339539 GGTTTATTGTTTATTGTTTAGAGTTTAG
1 AGTTTA-TGTTTAGTG-TTAGAGTTTAG
14339567 AGTTTA
1 AGTTTA
14339573 GCTAGTAGCT
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
28 46 0.92
29 4 0.08
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (26 bp):
AGTTTATGTTTAGTGTTAGAGTTTAG
Found at i:14339522 original size:7 final size:7
Alignment explanation
Indices: 14339505--14339573 Score: 57
Period size: 7 Copynumber: 9.9 Consensus size: 7
14339495 AGTGTTAAGA
*
14339505 GTTTAGT
1 GTTTAGG
*
14339512 GTTTATG
1 GTTTAGG
14339519 GTTTAGG
1 GTTTAGG
*
14339526 GTGTAGG
1 GTTTAGG
14339533 GTTTAGG
1 GTTTAGG
**
14339540 GTTTATT
1 GTTTAGG
**
14339547 GTTTATT
1 GTTTAGG
*
14339554 GTTTAGA
1 GTTTAGG
*
14339561 GTTTAGA
1 GTTTAGG
14339568 GTTTAG
1 GTTTAG
14339574 CTAGTAGCTT
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 53 1.00
ACGTcount: A:0.17, C:0.00, G:0.32, T:0.51
Consensus pattern (7 bp):
GTTTAGG
Found at i:14339573 original size:14 final size:14
Alignment explanation
Indices: 14339492--14339573 Score: 67
Period size: 14 Copynumber: 5.9 Consensus size: 14
14339482 CAGTTTATGA
*
14339492 TTTAGTGTTAAGAG
1 TTTAGTGTTTAGAG
14339506 TTTAGTGTTTATG-G
1 TTTAGTGTTTA-GAG
* * *
14339520 TTTAGGGTGTAGGG
1 TTTAGTGTTTAGAG
* **
14339534 TTTAGGGTTTATTG
1 TTTAGTGTTTAGAG
*
14339548 TTTATTGTTTAGAG
1 TTTAGTGTTTAGAG
*
14339562 TTTAGAGTTTAG
1 TTTAGTGTTTAG
14339574 CTAGTAGCTT
Statistics
Matches: 54, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
13 1 0.02
14 52 0.96
15 1 0.02
ACGTcount: A:0.20, C:0.00, G:0.30, T:0.50
Consensus pattern (14 bp):
TTTAGTGTTTAGAG
Found at i:14339592 original size:7 final size:7
Alignment explanation
Indices: 14339483--14339573 Score: 51
Period size: 7 Copynumber: 13.0 Consensus size: 7
14339473 TTAAGTATGC
14339483 AGTTTATG
1 AGTTTA-G
14339491 A-TTTAG
1 AGTTTAG
* *
14339497 TGTTAAG
1 AGTTTAG
14339504 AGTTTAG
1 AGTTTAG
*
14339511 TGTTTATG
1 AGTTTA-G
14339519 -GTTTAG
1 AGTTTAG
* *
14339525 GGTGTAG
1 AGTTTAG
*
14339532 GGTTTAG
1 AGTTTAG
* *
14339539 GGTTTAT
1 AGTTTAG
* *
14339546 TGTTTAT
1 AGTTTAG
*
14339553 TGTTTAG
1 AGTTTAG
14339560 AGTTTAG
1 AGTTTAG
14339567 AGTTTAG
1 AGTTTAG
14339574 CTAGTAGCTT
Statistics
Matches: 69, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
6 2 0.03
7 65 0.94
8 2 0.03
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (7 bp):
AGTTTAG
Found at i:14339773 original size:103 final size:103
Alignment explanation
Indices: 14339532--14339773 Score: 389
Period size: 103 Copynumber: 2.3 Consensus size: 103
14339522 TAGGGTGTAG
* * *
14339532 GGTTTAGGGTTT-ATTGTT-TATTGTTTAGAGTTTAGAGTTTAGCTAGTAGCTTAGAGTTTAGGG
1 GGTTTAGGGTTTAAATGTTATATT-TTAAG-GTTTAGGGTTTAGCTAGTAGCTTAGAGTTTAGGG
14339595 ATTAATACGGGCATAGGGTATATGGGTTAAGAAGGCATAT
64 ATTAATACGGGCATAGGGTATATGGGTTAAGAAGGCATAT
*
14339635 GGTTTAGGGTTTAAATTTTATATTTTAAGGTTTAGGGTTTAGCTAGTAGCTTAGAGTTTAGGGAT
1 GGTTTAGGGTTTAAATGTTATATTTTAAGGTTTAGGGTTTAGCTAGTAGCTTAGAGTTTAGGGAT
* *
14339700 TAATACGGGCATAGGGTATATGGGTTAAGAGGGTATAT
66 TAATACGGGCATAGGGTATATGGGTTAAGAAGGCATAT
*
14339738 GGTTTGGGGTTTAAATGTTATATTTTAAGGTTTAGG
1 GGTTTAGGGTTTAAATGTTATATTTTAAGGTTTAGG
14339774 ATTATGGTAA
Statistics
Matches: 129, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
103 117 0.91
104 8 0.06
105 4 0.03
ACGTcount: A:0.26, C:0.04, G:0.30, T:0.40
Consensus pattern (103 bp):
GGTTTAGGGTTTAAATGTTATATTTTAAGGTTTAGGGTTTAGCTAGTAGCTTAGAGTTTAGGGAT
TAATACGGGCATAGGGTATATGGGTTAAGAAGGCATAT
Found at i:14339807 original size:103 final size:102
Alignment explanation
Indices: 14339594--14339797 Score: 250
Period size: 103 Copynumber: 2.0 Consensus size: 102
14339584 AGAGTTTAGG
*
14339594 GATTAATACGGGCATAGGGTATATGGGTTAAGAAGGCATATGGTTTAGGGTTTAAATTTTATATT
1 GATTAATACGGGCATAGGGTATATGGGTTAAGAAGGCATATGGTTTAGGGTTTAAATGTTATATT
* * ** ** **
14339659 TTAAGGTTTAGGGTTTAGCTAGTAGCTTAGAGTTTAGG
66 TTAAGGTTTAGGATTTAGCTAG-AACACAGAGTAAAAA
* * *
14339697 GATTAATACGGGCATAGGGTATATGGGTTAAGAGGGTATATGGTTTGGGGTTTAAATGTTATATT
1 GATTAATACGGGCATAGGGTATATGGGTTAAGAAGGCATATGGTTTAGGGTTTAAATGTTATATT
* *
14339762 TTAAGGTTTAGGA-TTATGGTA-AACACAGGGTAAAAA
66 TTAAGGTTTAGGATTTA-GCTAGAACACAGAGTAAAAA
14339798 TATGTTAATA
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
101 7 0.08
102 3 0.03
103 76 0.88
ACGTcount: A:0.30, C:0.04, G:0.29, T:0.36
Consensus pattern (102 bp):
GATTAATACGGGCATAGGGTATATGGGTTAAGAAGGCATATGGTTTAGGGTTTAAATGTTATATT
TTAAGGTTTAGGATTTAGCTAGAACACAGAGTAAAAA
Found at i:14339884 original size:55 final size:55
Alignment explanation
Indices: 14339823--14339932 Score: 211
Period size: 55 Copynumber: 2.0 Consensus size: 55
14339813 AAAAATTAAA
*
14339823 ATACTATTATATAAAATAATTTGAAATTAATTTTAATTTTGAGAAATAGTGGCGT
1 ATACTATTATATAAAATAATTTGAAAATAATTTTAATTTTGAGAAATAGTGGCGT
14339878 ATACTATTATATAAAATAATTTGAAAATAATTTTAATTTTGAGAAATAGTGGCGT
1 ATACTATTATATAAAATAATTTGAAAATAATTTTAATTTTGAGAAATAGTGGCGT
14339933 TTTTCGTGAA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.43, C:0.04, G:0.13, T:0.41
Consensus pattern (55 bp):
ATACTATTATATAAAATAATTTGAAAATAATTTTAATTTTGAGAAATAGTGGCGT
Found at i:14340523 original size:25 final size:23
Alignment explanation
Indices: 14340486--14340554 Score: 77
Period size: 25 Copynumber: 2.9 Consensus size: 23
14340476 CCCCACTCAG
* *
14340486 ATTTCCCCAATTTCATTTCCCTA
1 ATTTCCCAAATTTCATTTCCCCA
14340509 ATTTCCCAAATATTTC-TTTCCCCCA
1 ATTTCCC-AA-ATTTCATTT-CCCCA
*
14340534 ATTTCCCCAATTTCATTTCCC
1 ATTTCCCAAATTTCATTTCCC
14340555 GAAATCCCCA
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
23 15 0.38
24 8 0.21
25 16 0.41
ACGTcount: A:0.22, C:0.36, G:0.00, T:0.42
Consensus pattern (23 bp):
ATTTCCCAAATTTCATTTCCCCA
Found at i:14342606 original size:41 final size:41
Alignment explanation
Indices: 14342559--14342758 Score: 269
Period size: 41 Copynumber: 4.9 Consensus size: 41
14342549 GTGAAATTAT
* *
14342559 TCAGACTATACGTCTAGCAGGCTAAGTGCCGGTGAACTGAA
1 TCAGACTATAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
*
14342600 TCAGACTATACA-TCTAGCAGGCTAAGTGCCGGTGAACTGAA
1 TCAGACTATA-AGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
* *
14342641 TCAGGCTACAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
1 TCAGACTATAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
* * *
14342682 TCAGGCTATAGGCCTAGCAGGCTAAGTGCCGGTGAACGGAA
1 TCAGACTATAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
* * *
14342723 TTAGACTATAAGCCTATCAGG-TGAAGTGCCAGTGAA
1 TCAGACTATAAGCCTAGCAGGCT-AAGTGCCGGTGAA
14342759 TCTGTTTAAA
Statistics
Matches: 144, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
40 2 0.01
41 142 0.99
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.20
Consensus pattern (41 bp):
TCAGACTATAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
Found at i:14342976 original size:37 final size:36
Alignment explanation
Indices: 14342935--14343145 Score: 329
Period size: 37 Copynumber: 5.8 Consensus size: 36
14342925 TGTTGGATGT
14342935 ATATATATGTATATATGTATGCATTCGGCATAGGTGG
1 ATATA-ATGTATATATGTATGCATTCGGCATAGGTGG
**
14342972 ATATAAATGTATATATGTATGCATTCAACATAGGTGG
1 ATAT-AATGTATATATGTATGCATTCGGCATAGGTGG
14343009 ATATAAGTGTATATATGTATGCATTCGGCATAGGTGG
1 ATATAA-TGTATATATGTATGCATTCGGCATAGGTGG
14343046 ATATAAATGTATATATGTATGCATTCGGCATAGGTGG
1 ATAT-AATGTATATATGTATGCATTCGGCATAGGTGG
14343083 ATATAAGTGTATATATGTATGCATTCGGCATAGGTGG
1 ATATAA-TGTATATATGTATGCATTCGGCATAGGTGG
*
14343120 ATATAA-GTGTATATG--TGCATTCGGCA
1 ATATAATGTATATATGTATGCATTCGGCA
14343146 CTTATAGTTG
Statistics
Matches: 165, Mismatches: 5, Indels: 12
0.91 0.03 0.07
Matches are distributed among these distances:
33 11 0.07
35 8 0.05
36 4 0.02
37 139 0.84
38 3 0.02
ACGTcount: A:0.32, C:0.09, G:0.24, T:0.36
Consensus pattern (36 bp):
ATATAATGTATATATGTATGCATTCGGCATAGGTGG
Found at i:14343855 original size:9 final size:9
Alignment explanation
Indices: 14343837--14343905 Score: 59
Period size: 9 Copynumber: 7.4 Consensus size: 9
14343827 CTTATATATA
*
14343837 AACTTGCAT
1 AACTTACAT
14343846 AACTTACAT
1 AACTTACAT
*
14343855 AA-TAACAT
1 AACTTACAT
14343863 AATATCTTACAT
1 -A-A-CTTACAT
14343875 AACTTACAT
1 AACTTACAT
*
14343884 AAATTACAT
1 AACTTACAT
* *
14343893 AAATTAAAT
1 AACTTACAT
14343902 AACT
1 AACT
14343906 GGCGTTTTAA
Statistics
Matches: 50, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
8 5 0.10
9 37 0.74
10 2 0.04
11 1 0.02
12 5 0.10
ACGTcount: A:0.49, C:0.16, G:0.01, T:0.33
Consensus pattern (9 bp):
AACTTACAT
Found at i:14346493 original size:21 final size:21
Alignment explanation
Indices: 14346468--14346521 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 21
14346458 GTCCAAACAA
**
14346468 AACAAAAAAACAGTTCAAACC
1 AACAAAAAAACAGCCCAAACC
* **
14346489 AACAAATAAATGGCCCAAACC
1 AACAAAAAAACAGCCCAAACC
*
14346510 AACAAACAAACA
1 AACAAAAAAACA
14346522 CAAACCCGAG
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.61, C:0.26, G:0.06, T:0.07
Consensus pattern (21 bp):
AACAAAAAAACAGCCCAAACC
Found at i:14351469 original size:20 final size:20
Alignment explanation
Indices: 14351444--14351483 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
14351434 TTCATCTCAT
14351444 GCATCGCATCATATGCATTA
1 GCATCGCATCATATGCATTA
*
14351464 GCATCGCATTATATGCATTA
1 GCATCGCATCATATGCATTA
14351484 AAGATCTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.33
Consensus pattern (20 bp):
GCATCGCATCATATGCATTA
Found at i:14353695 original size:21 final size:21
Alignment explanation
Indices: 14353669--14353717 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
14353659 AAGAATGCAG
14353669 TTGAACCTGAATTATTAGTCA
1 TTGAACCTGAATTATTAGTCA
14353690 TTGAACCTGAATTATTAGTCA
1 TTGAACCTGAATTATTAGTCA
*
14353711 ATGAACC
1 TTGAACC
14353718 AATCAAAGAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (21 bp):
TTGAACCTGAATTATTAGTCA
Found at i:14359739 original size:89 final size:89
Alignment explanation
Indices: 14359584--14360228 Score: 1047
Period size: 89 Copynumber: 7.2 Consensus size: 89
14359574 GAGCAGGTTG
* * *
14359584 AAAGATAACAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCGAAGAAAGCAGATCTTGTCT
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCT
14359649 TCATGTACTGGCGTGAAGTAGATC
66 TCATGTACTGGCGTGAAGTAGATC
* * * * *
14359673 AAAGATACCAGATCTTGTCTTCCCATACTAGTGGCAAAGTAGATCGAAGAAAACAGATCTTATCT
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCT
* *
14359738 TCATGTATTGGCGTAAAGTAGATC
66 TCATGTACTGGCGTGAAGTAGATC
* * *
14359762 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGCAAAGTAGATCGAAGAAAGTAAATCTTGTCT
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCT
14359827 TCATGTACTGGCGTGAAGTAGATC
66 TCATGTACTGGCGTGAAGTAGATC
* * **
14359851 AAAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAAAAAATAGATCTTGTCT
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCT
14359916 TCATGTACTGGCGTGAAGTAGATC
66 TCATGTACTGGCGTGAAGTAGATC
* * * *
14359940 AAAGATAACAGATCTTGCCTTCCCATGCTGGTGGCAAAGCAGATCGAAGAAAGCAGATCTTGTCT
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCT
14360005 TCATGTACTGGCGTGAAGTAGATC
66 TCATGTACTGGCGTGAAGTAGATC
14360029 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCT
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCT
14360094 TCATGTACTGGCGTGAAGTAGATC
66 TCATGTACTGGCGTGAAGTAGATC
** *
14360118 AAAGATGCCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAAATCTTGTCT
1 AAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCT
* * *
14360183 TCATGTATTGGCATGAGGTAGATC
66 TCATGTACTGGCGTGAAGTAGATC
14360207 AAAGATAACAGATCTTGTCTTC
1 AAAGATAACAGATCTTGTCTTC
14360229 ATGTATTGGC
Statistics
Matches: 513, Mismatches: 43, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
89 513 1.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (89 bp):
AAAGATAACAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCT
TCATGTACTGGCGTGAAGTAGATC
Found at i:14360800 original size:21 final size:21
Alignment explanation
Indices: 14360775--14360828 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 21
14360765 GTCCAAACAA
**
14360775 AACAAAAAAACAGTTCAAACC
1 AACAAAAAAACAGACCAAACC
* * *
14360796 AACAAATAAGCGGACCAAACC
1 AACAAAAAAACAGACCAAACC
*
14360817 AACAAACAAACA
1 AACAAAAAAACA
14360829 CAAACCCGAG
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.61, C:0.26, G:0.07, T:0.06
Consensus pattern (21 bp):
AACAAAAAAACAGACCAAACC
Found at i:14364730 original size:21 final size:20
Alignment explanation
Indices: 14364704--14364753 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
14364694 CTACACCTTA
*
14364704 AAGCAGAGGTGGCAGCGAGGG
1 AAGCAGAGCT-GCAGCGAGGG
*
14364725 AAGCAGCTGCTGCAGCGAGGG
1 AAGCAG-AGCTGCAGCGAGGG
14364746 AAGCAGAG
1 AAGCAGAG
14364754 AAGCAGAGCA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 22 0.88
22 2 0.08
ACGTcount: A:0.30, C:0.18, G:0.46, T:0.06
Consensus pattern (20 bp):
AAGCAGAGCTGCAGCGAGGG
Found at i:14369486 original size:30 final size:30
Alignment explanation
Indices: 14369452--14369513 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
14369442 TATTCAAAAG
14369452 ATAGTTTTCTAAATCGAATGACGTGCAAAT
1 ATAGTTTTCTAAATCGAATGACGTGCAAAT
14369482 ATAGTTTTCTAAATCGAATGACGTGCAAAT
1 ATAGTTTTCTAAATCGAATGACGTGCAAAT
14369512 AT
1 AT
14369514 TAGAGTAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.34
Consensus pattern (30 bp):
ATAGTTTTCTAAATCGAATGACGTGCAAAT
Found at i:14370600 original size:21 final size:21
Alignment explanation
Indices: 14370567--14370634 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
14370557 ATCAAGCAGT
*
14370567 TACA-GTTCGCATATAATTTC
1 TACAGGTTCACATATAATTTC
** *
14370587 TATGGGTTCACATATAACTTC
1 TACAGGTTCACATATAATTTC
* *
14370608 TACATGTTCACATTATAATTCC
1 TACAGGTTCACA-TATAATTTC
14370630 TACAG
1 TACAG
14370635 TACTCTCATG
Statistics
Matches: 36, Mismatches: 10, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
20 2 0.06
21 23 0.64
22 11 0.31
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (21 bp):
TACAGGTTCACATATAATTTC
Found at i:14370632 original size:22 final size:21
Alignment explanation
Indices: 14370592--14370633 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
14370582 ATTTCTATGG
14370592 GTTCACATATAACTTCTACAT
1 GTTCACATATAACTTCTACAT
14370613 GTTCACATTATAA-TTCCTACA
1 GTTCACA-TATAACTT-CTACA
14370634 GTACTCTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.33, C:0.24, G:0.05, T:0.38
Consensus pattern (21 bp):
GTTCACATATAACTTCTACAT
Found at i:14371670 original size:30 final size:28
Alignment explanation
Indices: 14371634--14371695 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 28
14371624 GAAAAAGCCC
14371634 TTTTTTTCAAAATTTATCGAAATGGGCCGA
1 TTTTTTT-AAAATTTATCGAAATGGGCC-A
** * *
14371664 TTTTTTTATTATTTATCGGAATGGTCCA
1 TTTTTTTAAAATTTATCGAAATGGGCCA
14371692 TTTT
1 TTTT
14371696 CCGAGAAATC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 5 0.18
29 16 0.57
30 7 0.25
ACGTcount: A:0.24, C:0.11, G:0.15, T:0.50
Consensus pattern (28 bp):
TTTTTTTAAAATTTATCGAAATGGGCCA
Found at i:14378468 original size:23 final size:23
Alignment explanation
Indices: 14378442--14378508 Score: 98
Period size: 23 Copynumber: 2.8 Consensus size: 23
14378432 NNNNNNCCCT
14378442 AACCCTAACCTAACCTAACTAAA
1 AACCCTAACCTAACCTAACTAAA
* *
14378465 AACCCTAACCTAACTTAATTAAA
1 AACCCTAACCTAACCTAACTAAA
14378488 AACCCTAACCCTAACCCTAAC
1 AACCCTAA-CCTAA-CCTAAC
14378509 CTAACTTAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
23 29 0.76
24 5 0.13
25 4 0.11
ACGTcount: A:0.45, C:0.36, G:0.00, T:0.19
Consensus pattern (23 bp):
AACCCTAACCTAACCTAACTAAA
Found at i:14378497 original size:29 final size:29
Alignment explanation
Indices: 14378465--14378716 Score: 345
Period size: 29 Copynumber: 8.7 Consensus size: 29
14378455 CCTAACTAAA
14378465 AACCCTAACCTAACTTAATTAAAAACCCTAACCCT
1 AACCCTAACCTAACTTAATT--AAA----AACCCT
*
14378500 AACCCTAACCTAACTTAATTAAAAACCCC
1 AACCCTAACCTAACTTAATTAAAAACCCT
*
14378529 AACCCTAACCTAAATTAATTAAAAACCCT
1 AACCCTAACCTAACTTAATTAAAAACCCT
14378558 AACCCTAACCTAACTTAATT--AAA----
1 AACCCTAACCTAACTTAATTAAAAACCCT
14378581 AACCCTAACCTAACTTAATTAAAAACCCT
1 AACCCTAACCTAACTTAATTAAAAACCCT
* *
14378610 AACCCTAACCAAAATTAATTAAAAACCCT
1 AACCCTAACCTAACTTAATTAAAAACCCT
*
14378639 AACCCTAACCTAAATTAATTAAAAACCCT
1 AACCCTAACCTAACTTAATTAAAAACCCT
* *
14378668 AACCCTAACCTAAATTAACTAAAAACCCT
1 AACCCTAACCTAACTTAATTAAAAACCCT
14378697 AACCCTAACCTAACTTAATT
1 AACCCTAACCTAACTTAATT
14378717 TGATAAATTT
Statistics
Matches: 201, Mismatches: 10, Indels: 18
0.88 0.04 0.08
Matches are distributed among these distances:
23 20 0.10
25 3 0.01
27 3 0.01
29 152 0.76
33 3 0.01
35 20 0.10
ACGTcount: A:0.46, C:0.30, G:0.00, T:0.23
Consensus pattern (29 bp):
AACCCTAACCTAACTTAATTAAAAACCCT
Found at i:14378604 original size:81 final size:81
Alignment explanation
Indices: 14378500--14378716 Score: 335
Period size: 81 Copynumber: 2.6 Consensus size: 81
14378490 CCCTAACCCT
*
14378500 AACCCTAACCTAACTTAATTAAAAACCCCAACCCTAACCTAAATTAATTAAAAACCCTAACCCTA
1 AACCCTAACCTAACTTAATTAAAAACCCTAACCCTAACCTAAATTAATTAAAAACCCTAACCCTA
*
14378565 ACCTAACTTAATTAAA
66 ACCTAAATTAATTAAA
*
14378581 AACCCTAACCTAACTTAATTAAAAACCCTAACCCTAACCAAAATTAATTAAAAACCCTAACCCTA
1 AACCCTAACCTAACTTAATTAAAAACCCTAACCCTAACCTAAATTAATTAAAAACCCTAACCCTA
14378646 ACCTAAATTAATTAAA
66 ACCTAAATTAATTAAA
* *
14378662 AACCCTAACCCTAACCTAAATTAACTAAAAACCCTAACCCTAACCTAACTTAATT
1 AACCCTAA-CCTAA-C----TTAATTAAAAACCCTAACCCTAACCTAAATTAATT
14378717 TGATAAATTT
Statistics
Matches: 124, Mismatches: 6, Indels: 6
0.91 0.04 0.04
Matches are distributed among these distances:
81 86 0.69
82 5 0.04
83 1 0.01
87 32 0.26
ACGTcount: A:0.47, C:0.29, G:0.00, T:0.24
Consensus pattern (81 bp):
AACCCTAACCTAACTTAATTAAAAACCCTAACCCTAACCTAAATTAATTAAAAACCCTAACCCTA
ACCTAAATTAATTAAA
Found at i:14378612 original size:18 final size:20
Alignment explanation
Indices: 14378565--14378607 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 20
14378555 CCTAACCCTA
14378565 ACCTAACTTAATTAAAAACCC
1 ACCTAACTTAATTAAAAA-CC
14378586 TAACCTAACTTAATTAAAAACC
1 --ACCTAACTTAATTAAAAACC
14378608 CTAACCCTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 2 0.10
23 18 0.90
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (20 bp):
ACCTAACTTAATTAAAAACC
Found at i:14378692 original size:139 final size:136
Alignment explanation
Indices: 14378442--14378716 Score: 417
Period size: 139 Copynumber: 2.0 Consensus size: 136
14378432 NNNNNNCCCT
**
14378442 AACCCTAACCTAACCTAACTAAAAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAACCCTA
1 AACCCTAACCTAACCTAACTAAAAACCCTAACCTAACAAAATTAAAAA--C-AACCCTAACCCTA
* *
14378507 ACCTAACTTAATTAAAAACCCCAACCCTAACCTAAATTAATTAAAAACCCTAACCCTAACCTAAC
63 ACCTAAATTAATTAAAAACCCCAACCCTAACCTAAATTAACTAAAAACCCTAACCCTAACCTAAC
14378572 TTAATTAAA
128 TTAATTAAA
* *
14378581 AACCCTAACCTAACTTAATTAAAAACCCTAACCCTAACCAAAATTAATTAAA-AACCCTAACCCT
1 AACCCTAACCTAACCTAACTAAAAACCCTAA-CCTAA-CAAAATTAA--AAACAACCCTAACCCT
*
14378645 AACCTAAATTAATTAAAAACCCTAACCCTAACCTAAATTAACTAAAAACCCTAACCCTAACCTAA
62 AACCTAAATTAATTAAAAACCCCAACCCTAACCTAAATTAACTAAAAACCCTAACCCTAACCTAA
14378710 CTTAATT
127 CTTAATT
14378717 TGATAAATTT
Statistics
Matches: 125, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
139 110 0.88
140 5 0.04
141 7 0.06
143 3 0.02
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.23
Consensus pattern (136 bp):
AACCCTAACCTAACCTAACTAAAAACCCTAACCTAACAAAATTAAAAACAACCCTAACCCTAACC
TAAATTAATTAAAAACCCCAACCCTAACCTAAATTAACTAAAAACCCTAACCCTAACCTAACTTA
ATTAAA
Found at i:14378780 original size:56 final size:56
Alignment explanation
Indices: 14378714--14378932 Score: 336
Period size: 56 Copynumber: 3.9 Consensus size: 56
14378704 ACCTAACTTA
14378714 ATTTGATAAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTAGTTT
1 ATTTGATAAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTAGTTT
* * **
14378770 ATTTCATAAATTTTACTAACCATTAATACAATTTTTGG-CTTAATAATTTTA-CAT
1 ATTTGATAAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTAGTTT
14378824 ATTTTGAT-AATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTAGTTT
1 A-TTTGATAAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTAGTTT
* **
14378880 ATTTGATAAATTTTACTAACCATCAACACAATTTTTTTAGCTTAATAATTTTA
1 ATTTGATAAATTTTACTAACCATTAACACAATTTTTGGA-CTTAATAATTTTA
14378933 CATAATTTTC
Statistics
Matches: 147, Mismatches: 11, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
54 31 0.21
55 37 0.25
56 66 0.45
57 13 0.09
ACGTcount: A:0.36, C:0.12, G:0.05, T:0.47
Consensus pattern (56 bp):
ATTTGATAAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTAGTTT
Found at i:14378839 original size:110 final size:113
Alignment explanation
Indices: 14378715--14378941 Score: 388
Period size: 110 Copynumber: 2.0 Consensus size: 113
14378705 CCTAACTTAA
14378715 TTTGATAAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTAGTTTATTTCATAAA
1 TTTGATAAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTAGTTTATTTCATAAA
* * *
14378780 TTTTACTAACCATTAATACAA-TTTTTGGCTTAATAATTTTACAT-AT
66 TTTTACTAACCATCAACACAATTTTTTAGCTTAATAATTTTACATAAT
*
14378826 TTTGAT-AATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTAGTTTATTTGATAAA
1 TTTGATAAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTAGTTTATTTCATAAA
14378890 TTTTACTAACCATCAACACAATTTTTTTAGCTTAATAATTTTACATAAT
66 TTTTACTAACCATCAACACAA-TTTTTTAGCTTAATAATTTTACATAAT
14378939 TTT
1 TTT
14378942 CCATAATGTT
Statistics
Matches: 109, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
110 76 0.70
111 6 0.06
112 22 0.20
113 5 0.05
ACGTcount: A:0.36, C:0.12, G:0.05, T:0.47
Consensus pattern (113 bp):
TTTGATAAATTTTACTAACCATTAACACAATTTTTGGACTTAATAATTTTAGTTTATTTCATAAA
TTTTACTAACCATCAACACAATTTTTTAGCTTAATAATTTTACATAAT
Found at i:14382368 original size:127 final size:126
Alignment explanation
Indices: 14382067--14382421 Score: 577
Period size: 127 Copynumber: 2.8 Consensus size: 126
14382057 CCCAAACTTG
* *
14382067 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTTAAATAGCATCCTGG
1 CTACTGTAGCAAAATCACGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
** *
14382132 TAGAAGCGATTTTATACTATTTGCTCAGAAATGTCAACAAAAAAATTATTTCTTACATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACATCAAAAAAAAAATTATTTCTTACATGAC
* * **
14382193 TTACTGTAGCAAAATCACGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATTCTCA
1 CTACTGTAGCAAAATCACGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
**
14382258 TAGAAATGATTTTATACTATTTGCTCAGAAACATCAGAAAAAAAAATTATTTCTTACATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACATCA-AAAAAAAAATTATTTCTTACATGAC
14382320 CTACTGTAGCAAAATCACGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCACGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
*
14382385 TAGAAGCGATTTTATACTATTTGAC-CAGAAACGTCAA
66 TAGAAGCGATTTTATACTATTTG-CTCAGAAACATCAA
14382422 CTCGAAATAA
Statistics
Matches: 209, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
126 92 0.44
127 116 0.56
128 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (126 bp):
CTACTGTAGCAAAATCACGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
TAGAAGCGATTTTATACTATTTGCTCAGAAACATCAAAAAAAAAATTATTTCTTACATGAC
Found at i:14382701 original size:30 final size:28
Alignment explanation
Indices: 14382638--14382699 Score: 79
Period size: 29 Copynumber: 2.2 Consensus size: 28
14382628 CGATTTCCCG
14382638 AAAAATGGACCATTCCGGTAAATAATAA
1 AAAAATGGACCATTCCGGTAAATAATAA
* * **
14382666 AAAAATCGGCCCATTTCGGTAAATTTTAA
1 AAAAAT-GGACCATTCCGGTAAATAATAA
14382695 AAAAA
1 AAAAA
14382700 ATGGCTTTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 6 0.21
29 23 0.79
ACGTcount: A:0.48, C:0.15, G:0.13, T:0.24
Consensus pattern (28 bp):
AAAAATGGACCATTCCGGTAAATAATAA
Found at i:14383217 original size:19 final size:18
Alignment explanation
Indices: 14383180--14383218 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
14383170 ACGAATTGAG
* *
14383180 TTATTCGAGTTAATCGAA
1 TTATTCGAATCAATCGAA
14383198 TTATTCGAATCAACTCGAA
1 TTATTCGAATCAA-TCGAA
14383217 TT
1 TT
14383219 TTTTTTTCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.38
Consensus pattern (18 bp):
TTATTCGAATCAATCGAA
Found at i:14383276 original size:9 final size:9
Alignment explanation
Indices: 14383259--14383331 Score: 119
Period size: 9 Copynumber: 8.1 Consensus size: 9
14383249 TGAGTTTTCG
14383259 AATTCGAAT
1 AATTCGAAT
*
14383268 AACTCGAAT
1 AATTCGAAT
14383277 AATTCGAAT
1 AATTCGAAT
*
14383286 AACTCGAAT
1 AATTCGAAT
14383295 AATTCGAAT
1 AATTCGAAT
14383304 AATTCGAAT
1 AATTCGAAT
*
14383313 AACTCGAAT
1 AATTCGAAT
14383322 AATTCGAAT
1 AATTCGAAT
14383331 A
1 A
14383332 TCAAACTATA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 58 1.00
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.29
Consensus pattern (9 bp):
AATTCGAAT
Found at i:14383295 original size:27 final size:27
Alignment explanation
Indices: 14383262--14383331 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
14383252 GTTTTCGAAT
*
14383262 TCGAATAACTCGAATAATTCGAATAAC
1 TCGAATAATTCGAATAATTCGAATAAC
14383289 TCGAATAATTCGAATAATTCGAATAAC
1 TCGAATAATTCGAATAATTCGAATAAC
14383316 TCGAATAATTCGAATA
1 TCGAATAATTCGAATA
14383332 TCAAACTATA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.44, C:0.16, G:0.11, T:0.29
Consensus pattern (27 bp):
TCGAATAATTCGAATAATTCGAATAAC
Found at i:14385207 original size:12 final size:12
Alignment explanation
Indices: 14385190--14385219 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14385180 ATCATTAAAA
*
14385190 AATTAATATTTT
1 AATTAACATTTT
14385202 AATTAACATTTT
1 AATTAACATTTT
14385214 AATTAA
1 AATTAA
14385220 GAAAAAGTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (12 bp):
AATTAACATTTT
Found at i:14388636 original size:69 final size:70
Alignment explanation
Indices: 14388562--14388704 Score: 184
Period size: 69 Copynumber: 2.0 Consensus size: 70
14388552 ACAATTTTAC
* * *
14388562 TTGTTATC-ATCTATTAATTTATATTTTTAAGTAGACT-TTTATTTTTATAAGTTTCAATAA-TA
1 TTGTTA-CAATCTATTAATTCATATTTTTAAGTAG-CTCATTATTTTTATAAGTCTCAATAACTA
14388624 ACAATGA
64 ACAATGA
* * *
14388631 TTGTTACAATCTATTAATTCATATTTTTAAGTAGGTCATTATTTTTGTAAGTCTCGATAACTTAA
1 TTGTTACAATCTATTAATTCATATTTTTAAGTAGCTCATTATTTTTATAAGTCTCAATAAC-TAA
14388696 CAATGA
65 CAATGA
14388702 TTG
1 TTG
14388705 ATGAAAAGAA
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
68 2 0.03
69 50 0.78
71 12 0.19
ACGTcount: A:0.33, C:0.09, G:0.10, T:0.48
Consensus pattern (70 bp):
TTGTTACAATCTATTAATTCATATTTTTAAGTAGCTCATTATTTTTATAAGTCTCAATAACTAAC
AATGA
Found at i:14392540 original size:45 final size:45
Alignment explanation
Indices: 14392490--14392579 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
14392480 ATGGTAAAGT
14392490 TTGAATTGAATTTGAATGTTTAGGGAATCTGATAGGGATAATGTA
1 TTGAATTGAATTTGAATGTTTAGGGAATCTGATAGGGATAATGTA
14392535 TTGAATTGAATTTGAATGTTTAGGGAATCTGATAGGGATAATGTA
1 TTGAATTGAATTTGAATGTTTAGGGAATCTGATAGGGATAATGTA
14392580 CCAGATTTAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.33, C:0.02, G:0.27, T:0.38
Consensus pattern (45 bp):
TTGAATTGAATTTGAATGTTTAGGGAATCTGATAGGGATAATGTA
Found at i:14397147 original size:25 final size:23
Alignment explanation
Indices: 14397093--14397150 Score: 71
Period size: 25 Copynumber: 2.4 Consensus size: 23
14397083 AGGATTTGAC
14397093 TTTGTATCTGAAATTGCATATGA
1 TTTGTATCTGAAATTGCATATGA
* *
14397116 TTCTGTATTTGAAAATTGCATCTGTA
1 TT-TGTATCTG-AAATTGCATATG-A
14397142 TTTGTATCT
1 TTTGTATCT
14397151 ACATCTGTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 2 0.07
24 7 0.24
25 17 0.59
26 3 0.10
ACGTcount: A:0.26, C:0.10, G:0.16, T:0.48
Consensus pattern (23 bp):
TTTGTATCTGAAATTGCATATGA
Found at i:14397369 original size:17 final size:18
Alignment explanation
Indices: 14397341--14397374 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
14397331 AGACTGTAGA
14397341 TTGTTTTGGACTTTTTTT
1 TTGTTTTGGACTTTTTTT
14397359 TTGTTTT-GACTTTTTT
1 TTGTTTTGGACTTTTTT
14397375 CAAATTAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.06, C:0.06, G:0.15, T:0.74
Consensus pattern (18 bp):
TTGTTTTGGACTTTTTTT
Found at i:14398345 original size:17 final size:17
Alignment explanation
Indices: 14398323--14398355 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14398313 TTATAAAATG
14398323 TCAAGAGTTTTATTAGT
1 TCAAGAGTTTTATTAGT
*
14398340 TCAAGATTTTTATTAG
1 TCAAGAGTTTTATTAG
14398356 CTAAAGCCAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.06, G:0.15, T:0.48
Consensus pattern (17 bp):
TCAAGAGTTTTATTAGT
Found at i:14400092 original size:22 final size:20
Alignment explanation
Indices: 14400050--14400092 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 20
14400040 ATTTTTCTGG
**
14400050 AAATTGTTGGTTGAGTTATT
1 AAATTGTTGGTTGAGAAATT
14400070 AAATTGTATGGTATGAGAAATT
1 AAATTGT-TGGT-TGAGAAATT
14400092 A
1 A
14400093 TTACTTTAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 4 0.21
22 8 0.42
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (20 bp):
AAATTGTTGGTTGAGAAATT
Found at i:14400959 original size:75 final size:73
Alignment explanation
Indices: 14400866--14401073 Score: 204
Period size: 75 Copynumber: 2.8 Consensus size: 73
14400856 CTATTGCCGA
* * **
14400866 TTATCCAACTACCACTGGGTTCAATCTTTGTCGATTTGTTTGACTAGTGTTGCGCACACCATTAT
1 TTATCCAACTAGCGCTGGGCACAA-CTTTGTCGATTTGTTTGACTAGTGTTG-GCACACCATTAT
14400931 AC-TTGTCGGT
64 -CTTTGTCGGT
* * * * *
14400941 TTATCCAACTAGCGCTGGGCACAACCTTTGTCAATTTATCTAACTAGTGCTAGGCACACCATTAT
1 TTATCCAACTAGCGCTGGGCACAA-CTTTGTCGATTTGTTTGACTAGTG-TTGGCACACCATTAT
*
14401006 CTTTGTTGGT
64 CTTTGTCGGT
* * * *
14401016 TTA-CTCGACTAGCGCTGGGCGCAACTTTCGTCGATTCGTTTGACTAGTGCTGGGCACA
1 TTATC-CAACTAGCGCTGGGCACAACTTT-GTCGATTTGTTTGACTAGTG-TTGGCACA
14401074 TCTATCGTCG
Statistics
Matches: 110, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
74 6 0.05
75 102 0.93
76 2 0.02
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.35
Consensus pattern (73 bp):
TTATCCAACTAGCGCTGGGCACAACTTTGTCGATTTGTTTGACTAGTGTTGGCACACCATTATCT
TTGTCGGT
Found at i:14401654 original size:18 final size:18
Alignment explanation
Indices: 14401593--14401656 Score: 76
Period size: 18 Copynumber: 3.6 Consensus size: 18
14401583 CAAGGTCACG
*
14401593 ATCAATAGCGT-ATCTATC
1 ATCAATATCGTCA-CTATC
* * *
14401611 ATCAATAACATCACTAGC
1 ATCAATATCGTCACTATC
14401629 ATCAATATCGTCACTATC
1 ATCAATATCGTCACTATC
14401647 ATCAATATCG
1 ATCAATATCG
14401657 AAATCATCAA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
18 38 0.97
19 1 0.03
ACGTcount: A:0.38, C:0.25, G:0.08, T:0.30
Consensus pattern (18 bp):
ATCAATATCGTCACTATC
Found at i:14405129 original size:21 final size:21
Alignment explanation
Indices: 14405100--14405140 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
14405090 GCAGCAAAAC
*
14405100 AGGCTTTTAGCGGCATTTTTT
1 AGGCCTTTAGCGGCATTTTTT
14405121 AGGCCTTTAGCGGCATTTTT
1 AGGCCTTTAGCGGCATTTTT
14405141 ATGTGCCGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.15, C:0.17, G:0.24, T:0.44
Consensus pattern (21 bp):
AGGCCTTTAGCGGCATTTTTT
Found at i:14405304 original size:43 final size:44
Alignment explanation
Indices: 14405234--14405522 Score: 340
Period size: 43 Copynumber: 6.7 Consensus size: 44
14405224 TTTATTTAAA
*
14405234 AAACACCGCTAAAGAACATGACCTTTAGCGGCGCCTC-TACCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCCTCTTACCAC
* * ** *
14405277 AAACGCCACTAAAAAACATGAAATTTAGCGGCGCTTC-TACCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCCTCTTACCAC
* * *
14405320 AAACGCCGCTAAAGAACATGACCTTTAGTGGCGCTTC-TACTAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCCTCTTACCAC
* ** *
14405363 AAACGCCGCTAAAGATCATGACCTTTAGCGG-AACTCTTATCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCCTCTTACCAC
* ** * *
14405406 AAATGCCGCTAAAGAGTATGACCTTTAGCGGCG-CTCTTATCAT
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCCTCTTACCAC
*
14405449 AAACGCCGCTAAAGAACATGACCTTTAGCGGCG-CTCTTATCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCCTCTTACCAC
* *
14405492 AAAAGCCACTAAAGAACATGA-CTTTAGCGGC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGC
14405523 ATTTATGAAG
Statistics
Matches: 214, Mismatches: 30, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
42 12 0.06
43 202 0.94
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.21
Consensus pattern (44 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCCTCTTACCAC
Found at i:14411236 original size:9 final size:9
Alignment explanation
Indices: 14411222--14411479 Score: 181
Period size: 9 Copynumber: 28.0 Consensus size: 9
14411212 TAAGTATAAT
14411222 TAAGTTATG
1 TAAGTTATG
14411231 TAAGTTATG
1 TAAGTTATG
* * *
14411240 ATATGATATA
1 -TAAGTTATG
*
14411250 T-ATTTATG
1 TAAGTTATG
14411258 T-A-TTATG
1 TAAGTTATG
14411265 TAAGTTATG
1 TAAGTTATG
14411274 TAAGTTATG
1 TAAGTTATG
* *
14411283 ATATGATATATA
1 -TAAG-T-TATG
14411295 TAAGTTAT-
1 TAAGTTATG
*
14411303 TACGTTATG
1 TAAGTTATG
14411312 TAAGTTATG
1 TAAGTTATG
*
14411321 TGAGTTATG
1 TAAGTTATG
14411330 TAAGTTATG
1 TAAGTTATG
* *
14411339 ATATGATATATA
1 -TAAG-T-TATG
14411351 TAAGTTAT-
1 TAAGTTATG
14411359 TAAGTTATG
1 TAAGTTATG
14411368 TAAGTTATG
1 TAAGTTATG
*
14411377 TGAGTTATG
1 TAAGTTATG
14411386 TAAGTTATG
1 TAAGTTATG
*
14411395 ATATTA-TATATA
1 -TA--AGT-TATG
14411407 TAAGTTAT-
1 TAAGTTATG
14411415 TAAGTTATG
1 TAAGTTATG
* *
14411424 ATATGATATATA
1 -TAAG-T-TATG
14411436 TAAGTTAT-
1 TAAGTTATG
14411444 TAAGTTATG
1 TAAGTTATG
* *
14411453 TATGTTGTG
1 TAAGTTATG
*
14411462 TGAGTTATG
1 TAAGTTATG
14411471 TAAGTTATG
1 TAAGTTATG
14411480 ATATGATATA
Statistics
Matches: 199, Mismatches: 29, Indels: 42
0.74 0.11 0.16
Matches are distributed among these distances:
7 6 0.03
8 37 0.19
9 107 0.54
10 21 0.11
11 15 0.08
12 13 0.07
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:14411314 original size:47 final size:46
Alignment explanation
Indices: 14411222--14411470 Score: 227
Period size: 56 Copynumber: 5.4 Consensus size: 46
14411212 TAAGTATAAT
14411222 TAAGTTATGTAAGTTATGATATGATATATAT---TTATGTA-TTATG
1 TAAGTTATGTAAGTTATGATATGATATATATAAGTTAT-TAGTTATG
14411265 TAAGTTATGTAAGTTATGATATGATATATATAAGTTATTACGTTATGTAAG
1 TAAGTTATGTAAGTTATGATATGATATATATAAGTTATTA-GTTA--T--G
14411316 TTATGTGAGTTATGTAAGTTATGATATGATATATATAAGTTATTAAGTTATG
1 -TA----AGTTATGTAAGTTATGATATGATATATATAAGTTATT-AGTTATG
* * *
14411368 TAAGTTATGTGAGTTATG-TAAG-T-TATGAT-A-TTA-TA--TATA
1 TAAGTTATGTAAGTTATGATATGATATAT-ATAAGTTATTAGTTATG
14411407 TAAGTTAT-TAAGTTATGATATGATATATATAAGTTATTAAGTTATG
1 TAAGTTATGTAAGTTATGATATGATATATATAAGTTATT-AGTTATG
* * *
14411453 TATGTTGTGTGAGTTATG
1 TAAGTTATGTAAGTTATG
14411471 TAAGTTATGA
Statistics
Matches: 171, Mismatches: 9, Indels: 48
0.75 0.04 0.21
Matches are distributed among these distances:
38 8 0.05
39 14 0.08
40 3 0.02
41 5 0.03
42 4 0.02
43 35 0.20
44 5 0.03
45 5 0.03
46 16 0.09
47 26 0.15
49 1 0.01
51 3 0.02
52 3 0.02
54 1 0.01
56 41 0.24
57 1 0.01
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.46
Consensus pattern (46 bp):
TAAGTTATGTAAGTTATGATATGATATATATAAGTTATTAGTTATG
Found at i:14411327 original size:56 final size:56
Alignment explanation
Indices: 14411253--14411423 Score: 301
Period size: 56 Copynumber: 3.1 Consensus size: 56
14411243 TGATATATAT
* *
14411253 TTATGT-A-TTATGTAAGTTATGTAAGTTATGATATGATATATATAAGTTATTACG
1 TTATGTAAGTTATGTGAGTTATGTAAGTTATGATATGATATATATAAGTTATTAAG
14411307 TTATGTAAGTTATGTGAGTTATGTAAGTTATGATATGATATATATAAGTTATTAAG
1 TTATGTAAGTTATGTGAGTTATGTAAGTTATGATATGATATATATAAGTTATTAAG
*
14411363 TTATGTAAGTTATGTGAGTTATGTAAGTTATGATATTATATATATAAGTTATTAAG
1 TTATGTAAGTTATGTGAGTTATGTAAGTTATGATATGATATATATAAGTTATTAAG
14411419 TTATG
1 TTATG
14411424 ATATGATATA
Statistics
Matches: 112, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
54 6 0.05
55 1 0.01
56 105 0.94
ACGTcount: A:0.35, C:0.01, G:0.18, T:0.46
Consensus pattern (56 bp):
TTATGTAAGTTATGTGAGTTATGTAAGTTATGATATGATATATATAAGTTATTAAG
Found at i:14411419 original size:85 final size:86
Alignment explanation
Indices: 14411323--14411493 Score: 308
Period size: 85 Copynumber: 2.0 Consensus size: 86
14411313 AAGTTATGTG
14411323 AGTTATGTAAGTTATGATATGATATATATAAGTTATTAAGTTATGTAAGTTATGTGAGTTATGTA
1 AGTTATGTAAGTTATGATATGATATATATAAGTTATTAAGTTATGTAAGTTATGTGAGTTATGTA
*
14411388 AGTTATGATATTATATATATA
66 AGTTATGATATGATATATATA
* *
14411409 AGTTAT-TAAGTTATGATATGATATATATAAGTTATTAAGTTATGTATGTTGTGTGAGTTATGTA
1 AGTTATGTAAGTTATGATATGATATATATAAGTTATTAAGTTATGTAAGTTATGTGAGTTATGTA
14411473 AGTTATGATATGATATATATA
66 AGTTATGATATGATATATATA
14411494 TATATATATA
Statistics
Matches: 82, Mismatches: 3, Indels: 1
0.95 0.03 0.01
Matches are distributed among these distances:
85 76 0.93
86 6 0.07
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (86 bp):
AGTTATGTAAGTTATGATATGATATATATAAGTTATTAAGTTATGTAAGTTATGTGAGTTATGTA
AGTTATGATATGATATATATA
Found at i:14411492 original size:2 final size:2
Alignment explanation
Indices: 14411480--14411521 Score: 75
Period size: 2 Copynumber: 20.5 Consensus size: 2
14411470 GTAAGTTATG
14411480 AT AT GAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14411522 GTATTNNNNN
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 37 0.95
3 2 0.05
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14413042 original size:23 final size:22
Alignment explanation
Indices: 14413010--14413083 Score: 62
Period size: 23 Copynumber: 3.2 Consensus size: 22
14413000 TCATATCAAT
*
14413010 TTTAAATAATTAATTTTTGAAAA
1 TTTAATTAATTAATTTTT-AAAA
*
14413033 TTTAATTAATATAAATTTTAAAA
1 TTTAATTAAT-TAATTTTTAAAA
*
14413056 TTTTTATATAATT--TTTTTAAAAA
1 -TTTAAT-TAATTAATTTTT-AAAA
14413079 TTTAA
1 TTTAA
14413084 ACTACAATCA
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
22 8 0.19
23 17 0.40
24 13 0.31
25 4 0.10
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (22 bp):
TTTAATTAATTAATTTTTAAAA
Found at i:14413067 original size:25 final size:24
Alignment explanation
Indices: 14413007--14413068 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
14412997 AATTCATATC
* *
14413007 AATTTTAAATAATTAATTTTTGAA
1 AATTTTATATAATTAAATTTTGAA
*
14413031 AATTTAAT-TAATATAAATTTT-AA
1 AATTTTATATAAT-TAAATTTTGAA
14413054 AATTTTTATATAATT
1 AA-TTTTATATAATT
14413069 TTTTTAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
23 8 0.26
24 19 0.61
25 4 0.13
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (24 bp):
AATTTTATATAATTAAATTTTGAA
Found at i:14413258 original size:14 final size:14
Alignment explanation
Indices: 14413241--14413279 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
14413231 ATGAACTATA
14413241 AACCCTAAACACCT
1 AACCCTAAACACCT
* *
14413255 AACCCTTAACCCCT
1 AACCCTAAACACCT
14413269 AACACCTAAAC
1 AAC-CCTAAAC
14413280 CTTAAACCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.41, C:0.44, G:0.00, T:0.15
Consensus pattern (14 bp):
AACCCTAAACACCT
Found at i:14413264 original size:64 final size:63
Alignment explanation
Indices: 14413181--14413433 Score: 177
Period size: 64 Copynumber: 3.8 Consensus size: 63
14413171 ACTAATTAAT
** * * *
14413181 CTAAACCCTAAACATTTAACTCCTATCCCCTAAACCTTGAATCATAAAACATGAACTATAAACC
1 CTAAACCCT-AACCCTTAACCCCTAACCCCTAAACCTTGAATCATAAAACATAAACTATAAACC
* * * *
14413245 CTAAACACCTAACCCTTAACCCCTAACACCTAAACCTTAAACCCTAACCCTTAAACCATAAACTA
1 CTAAAC-CCTAACCCTTAACCCCTAACCCCTAAACCTTGAA---T----CATAAAACATAAACTA
*
14413310 TAAATC
58 TAAACC
* * * * *
14413316 ATAATCTCTAAACCCCTAACCCCTATCCCCTAAACAC-TGAATCATAAAACATAAACTATAAACC
1 CTAAACCCT-AACCCTTAACCCCTAACCCCTAAAC-CTTGAATCATAAAACATAAACTATAAACC
* ** * * * *
14413380 CTAAACCCCTAACACC-TAAACTTTAAACCCTAACCCTTGAACCATAAACCATAA
1 CTAAA-CCCTAAC-CCTTAACCCCTAACCCCTAAACCTTGAATCATAAAACATAA
14413434 TCCCTAAACC
Statistics
Matches: 145, Mismatches: 31, Indels: 26
0.72 0.15 0.13
Matches are distributed among these distances:
63 1 0.01
64 84 0.58
65 8 0.06
67 1 0.01
68 1 0.01
70 2 0.01
71 47 0.32
72 1 0.01
ACGTcount: A:0.43, C:0.34, G:0.02, T:0.22
Consensus pattern (63 bp):
CTAAACCCTAACCCTTAACCCCTAACCCCTAAACCTTGAATCATAAAACATAAACTATAAACC
Found at i:14413265 original size:21 final size:22
Alignment explanation
Indices: 14413239--14413307 Score: 81
Period size: 21 Copynumber: 3.2 Consensus size: 22
14413229 ACATGAACTA
*
14413239 TAAACCCTAAACACCTAACCCT
1 TAAACCCTAAACACCTAAACCT
*
14413261 TAACCCCT-AACACCTAAACCT
1 TAAACCCTAAACACCTAAACCT
*
14413282 TAAACCCT-AAC-CCTTAAACCA
1 TAAACCCTAAACACC-TAAACCT
14413303 TAAAC
1 TAAAC
14413308 TATAAATCAT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
20 2 0.05
21 33 0.79
22 7 0.17
ACGTcount: A:0.42, C:0.39, G:0.00, T:0.19
Consensus pattern (22 bp):
TAAACCCTAAACACCTAAACCT
Found at i:14413290 original size:14 final size:14
Alignment explanation
Indices: 14413273--14413307 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
14413263 ACCCCTAACA
14413273 CCTAAACCTTAAAC
1 CCTAAACCTTAAAC
*
14413287 CCTAACCCTTAAAC
1 CCTAAACCTTAAAC
*
14413301 CATAAAC
1 CCTAAAC
14413308 TATAAATCAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.20
Consensus pattern (14 bp):
CCTAAACCTTAAAC
Found at i:14413300 original size:57 final size:57
Alignment explanation
Indices: 14413239--14413540 Score: 196
Period size: 57 Copynumber: 5.2 Consensus size: 57
14413229 ACATGAACTA
* * *
14413239 TAAACCCTAAACACCTAACCCTTAACCCCTAACACCTAAACCTTAAACCCTAACCCT
1 TAAACCATAAACACATAACCCTAAACCCCTAACACCTAAACCTTAAACCCTAACCCT
* * ** * * * *
14413296 TAAACCATAAACTATAAATCATAATCTCTAAACCCCTAACCCCTATCCCCTAAACACTGAA-TCA
1 TAAACCATAAAC-----A-CATAA-CCCTAAACCCCTAACACCTAAACCTTAAACCCT-AACCCT
* * *
14413360 TAAAACATAAAC-TATAAACCCTAAACCCCTAACACCTAAACTTTAAACCCTAACCCT
1 TAAACCATAAACACAT-AACCCTAAACCCCTAACACCTAAACCTTAAACCCTAACCCT
* * * * *** ** *
14413417 TGAACCATAAAC-CATAATCCCTAAACCCCTATCTCCTAAACCCTAAATAATAAAACA
1 TAAACCATAAACACATAA-CCCTAAACCCCTAACACCTAAACCTTAAACCCTAACCCT
* * * ** * * * *
14413474 TAAACCCTAAACCCTTAGTCCTTAACCCCTAACCCCTAAACGTTAAACCCCAACCCT
1 TAAACCATAAACACATAACCCTAAACCCCTAACACCTAAACCTTAAACCCTAACCCT
14413531 TAAACCATAA
1 TAAACCATAA
14413541 TCCATAATCC
Statistics
Matches: 180, Mismatches: 53, Indels: 24
0.70 0.21 0.09
Matches are distributed among these distances:
56 4 0.02
57 126 0.70
58 5 0.03
62 1 0.01
63 4 0.02
64 38 0.21
65 2 0.01
ACGTcount: A:0.42, C:0.36, G:0.01, T:0.21
Consensus pattern (57 bp):
TAAACCATAAACACATAACCCTAAACCCCTAACACCTAAACCTTAAACCCTAACCCT
Found at i:14413384 original size:7 final size:7
Alignment explanation
Indices: 14413374--14413488 Score: 56
Period size: 7 Copynumber: 16.1 Consensus size: 7
14413364 ACATAAACTA
14413374 TAAACCC
1 TAAACCC
14413381 TAAACCCC
1 TAAA-CCC
14413389 T-AACACC
1 TAAAC-CC
**
14413396 TAAACTT
1 TAAACCC
14413403 TAAACCC
1 TAAACCC
14413410 T-AACCC
1 TAAACCC
* *
14413416 TTGAACCA
1 -TAAACCC
*
14413424 TAAACCA
1 TAAACCC
*
14413431 TAATCCC
1 TAAACCC
14413438 TAAACCCC
1 TAAA-CCC
*
14413446 T-ATCTCC
1 TAAAC-CC
14413453 TAAACCC
1 TAAACCC
***
14413460 TAAATAA
1 TAAACCC
* *
14413467 TAAAACA
1 TAAACCC
14413474 TAAACCC
1 TAAACCC
14413481 TAAACCC
1 TAAACCC
14413488 T
1 T
14413489 TAGTCCTTAA
Statistics
Matches: 82, Mismatches: 18, Indels: 16
0.71 0.16 0.14
Matches are distributed among these distances:
6 7 0.09
7 58 0.71
8 17 0.21
ACGTcount: A:0.43, C:0.36, G:0.01, T:0.21
Consensus pattern (7 bp):
TAAACCC
Found at i:14413476 original size:114 final size:114
Alignment explanation
Indices: 14413255--14413550 Score: 322
Period size: 114 Copynumber: 2.5 Consensus size: 114
14413245 CTAAACACCT
14413255 AACCCTTAACCCCTAACACCTAAACCTTAAACCCTAACCCTTAAACCATAAACTATAAATCATAA
1 AACCCTTAACCCCTAACACCTAAACCTTAAACCCTAACCCTTAAACCATAAAC-------CATAA
* ** * * * *
14413320 TCTCTAAACCCCTAACCCCTATCCCCTAAACACTGAATCATAAAACATAAACTATA
59 TCCCTAAACCCCTAACCCCTAAACCCTAAACAATAAAACATAAAACATAAACCATA
* * *
14413376 AACCCTAAACCCCTAACACCTAAACTTTAAACCCTAACCCTTGAACCATAAACCATAATCCCTAA
1 AACCCTTAACCCCTAACACCTAAACCTTAAACCCTAACCCTTAAACCATAAACCATAATCCCTAA
* * * * * * *
14413441 ACCCCTATCTCCTAAACCCTAAATAATAAAACATAAACCCTAAACCCTT
66 ACCCCTAACCCCTAAACCCTAAACAATAAAACATAAAACATAAACCATA
** * * * *
14413490 AGTCCTTAACCCCTAACCCCTAAACGTTAAACCCCAACCCTTAAACCATAATCCATAATCC
1 AACCCTTAACCCCTAACACCTAAACCTTAAACCCTAACCCTTAAACCATAAACCATAATCC
14413551 ATAATCTCTA
Statistics
Matches: 150, Mismatches: 25, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
114 100 0.67
121 50 0.33
ACGTcount: A:0.41, C:0.36, G:0.01, T:0.22
Consensus pattern (114 bp):
AACCCTTAACCCCTAACACCTAAACCTTAAACCCTAACCCTTAAACCATAAACCATAATCCCTAA
ACCCCTAACCCCTAAACCCTAAACAATAAAACATAAAACATAAACCATA
Found at i:14413569 original size:15 final size:15
Alignment explanation
Indices: 14413531--14413579 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
14413521 CCCCAACCCT
*
14413531 TAAA-CCATAATCCA
1 TAAACCCATAATTCA
*
14413545 T-AATCCATAATCTC-
1 TAAACCCATAAT-TCA
14413559 TAAACCCATAATTCA
1 TAAACCCATAATTCA
14413574 TAAACC
1 TAAACC
14413580 TTAAATTAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
13 2 0.07
14 11 0.38
15 16 0.55
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.27
Consensus pattern (15 bp):
TAAACCCATAATTCA
Found at i:14413584 original size:22 final size:22
Alignment explanation
Indices: 14413542--14413584 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
14413532 AAACCATAAT
*
14413542 CCATAATCCATAATCTCTAAAC
1 CCATAATCCATAACCTCTAAAC
*
14413564 CCATAATTCATAAACCT-TAAA
1 CCATAATCCAT-AACCTCTAAA
14413585 TTAGTAACTC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.44, C:0.28, G:0.00, T:0.28
Consensus pattern (22 bp):
CCATAATCCATAACCTCTAAAC
Found at i:14413613 original size:14 final size:14
Alignment explanation
Indices: 14413594--14413633 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
14413584 ATTAGTAACT
*
14413594 CCTAAACCTTAAAC
1 CCTAAACCATAAAC
14413608 CCTAAACCATAAAC
1 CCTAAACCATAAAC
* *
14413622 TCTAAACTATAA
1 CCTAAACCATAA
14413634 TGATAATTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.23
Consensus pattern (14 bp):
CCTAAACCATAAAC
Found at i:14414174 original size:40 final size:38
Alignment explanation
Indices: 14414128--14414258 Score: 127
Period size: 40 Copynumber: 3.3 Consensus size: 38
14414118 CTTAACTTCT
* *
14414128 TTGCGGCGTTTTCCAAACAGCGCTGCTAATGCTTGACCTA
1 TTGCGGCGTTTT-CAAA-AGCGCTGCTAATGCTCGATCTA
* * *
14414168 TAGCGGCGTTTTACAGAAAGCGCCGCTATTGCTCGATCTA
1 TTGCGGCGTTTT-CA-AAAGCGCTGCTAATGCTCGATCTA
* * * *
14414208 TTGCGGCATTTGTTAAAAATCACTGCTAATGCTCGATCTA
1 TTGCGGC-GTT-TTCAAAAGCGCTGCTAATGCTCGATCTA
14414248 TTGCGGCGTTT
1 TTGCGGCGTTT
14414259 GTTAAAAATT
Statistics
Matches: 74, Mismatches: 14, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
38 1 0.01
39 2 0.03
40 64 0.86
41 5 0.07
42 2 0.03
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (38 bp):
TTGCGGCGTTTTCAAAAGCGCTGCTAATGCTCGATCTA
Found at i:14414260 original size:40 final size:40
Alignment explanation
Indices: 14414192--14414267 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
14414182 AGAAAGCGCC
*
14414192 GCTATTGCTCGATCTATTGCGGCATTTGTTAAAAATCACT
1 GCTAATGCTCGATCTATTGCGGCATTTGTTAAAAATCACT
*
14414232 GCTAATGCTCGATCTATTGCGGCGTTTGTTAAAAAT
1 GCTAATGCTCGATCTATTGCGGCATTTGTTAAAAAT
14414268 TGTCGCTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (40 bp):
GCTAATGCTCGATCTATTGCGGCATTTGTTAAAAATCACT
Found at i:14414397 original size:188 final size:192
Alignment explanation
Indices: 14414052--14414427 Score: 442
Period size: 188 Copynumber: 2.0 Consensus size: 192
14414042 AAATGATTTT
*
14414052 TTGCGGTGTTTGTTAAAAAGCGCCGCTAATGCCACTAAAGCTCAAAAAGAAAACGACGTCGTTTT
1 TTGCGGCGTTTGTTAAAAAGCGCCGCTAATGCCACTAAAGCTCAAAAAGAAAACGA---C-TTTT
* * ** *
14414117 GCTTAACTTCTTTGCGGCGTTTTCCAAACAGCGCTGCTAATGCTTGACCTATAGCGGCGTTTTAC
62 GCTCAACTTCTTTGCGGCATTTTCCAAACAGCGCCACTAATGCTCGACCTATAGCGGCGTTTTAC
* *
14414182 AGAAAGCGCCGCTATTGCTCGATCTATTGCGGCATTTGTTAAAAATCACTGCTAATGCTCGATCT
127 AGAAAGCGCCGCTAATGCTCGATCTATTGCGGCATTTGTTAAAAAGCACTGCTAATGCTCGATCT
14414247 A
192 A
** * *
14414248 TTGCGGCGTTTGTTAAAAATTGTCGCTAATGCCACTAAAGCTCAACAA-AAAAC-A-TTTTGCTC
1 TTGCGGCGTTTGTTAAAAAGCGCCGCTAATGCCACTAAAGCTCAAAAAGAAAACGACTTTTGCTC
* * *
14414310 AACTT-TTTGCGGCATTTTCC-AACAAGCGCCACTATTGCTCGATCTTTAGCGGCGTTTCT-CA-
66 AACTTCTTTGCGGCATTTTCCAAAC-AGCGCCACTAATGCTCGACCTATAGCGGCGTTT-TACAG
* * * * ** *
14414371 ATAAGTGTCGCTAATGTTCTATCTATTGCGGTGTTTGTTAAAAAGCGCTGCTAATGC
129 A-AAGCGCCGCTAATGCTCGATCTATTGCGGCATTTGTTAAAAAGCACTGCTAATGC
14414428 CACTAAAGCT
Statistics
Matches: 155, Mismatches: 22, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
187 4 0.03
188 89 0.57
189 13 0.08
194 1 0.01
195 5 0.03
196 43 0.28
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (192 bp):
TTGCGGCGTTTGTTAAAAAGCGCCGCTAATGCCACTAAAGCTCAAAAAGAAAACGACTTTTGCTC
AACTTCTTTGCGGCATTTTCCAAACAGCGCCACTAATGCTCGACCTATAGCGGCGTTTTACAGAA
AGCGCCGCTAATGCTCGATCTATTGCGGCATTTGTTAAAAAGCACTGCTAATGCTCGATCTA
Found at i:14414438 original size:148 final size:152
Alignment explanation
Indices: 14414232--14414522 Score: 387
Period size: 148 Copynumber: 1.9 Consensus size: 152
14414222 AAAAATCACT
** *
14414232 GCTAATGCTCGATCTATTGCGGCGTTTGTTAAAAATTGTCGCTAATGCCACTAAAGCTCAACAA-
1 GCTAATGCTCGATCTATTGCGGCGTTTGTTAAAAAGCGTCGCTAATGCCACTAAAGCTCAAAAAG
* * *
14414296 AAAAC-AT-TTTGCTCAAC-TTTTTGCGGCATTTTCCAACAAGCGCCACT-ATTGCTCGATCTTT
66 AAAACGATCTTTGCTCAACTTTTTTGCGGCATTTTCCAAAAAGCGCCACTCA-TGCTCGACCTGT
14414357 AGCGGCGTTTCTCAATAAGTGTC
130 AGCGGCGTTTCTCAATAAGTGTC
* * *
14414380 GCTAATGTTCTATCTATTGCGGTGTTTGTTAAAAAGCG-CTGCTAATGCCACTAAAGCTCAAAAA
1 GCTAATGCTCGATCTATTGCGGCGTTTGTTAAAAAGCGTC-GCTAATGCCACTAAAGCTCAAAAA
* *
14414444 GAAAACGATGCCGCTTTGCTCAACTTTTTTGCGGCGTTTTCCAAAAAGCGCCACTCATGCTTGAC
65 GAAAACGAT----CTTTGCTCAACTTTTTTGCGGCATTTTCCAAAAAGCGCCACTCATGCTCGAC
14414509 CTGTAGCGGCGTTT
126 CTGTAGCGGCGTTT
14414523 TACAAAAAGC
Statistics
Matches: 122, Mismatches: 11, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
147 1 0.01
148 56 0.46
149 5 0.04
150 2 0.02
155 10 0.08
156 47 0.39
157 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (152 bp):
GCTAATGCTCGATCTATTGCGGCGTTTGTTAAAAAGCGTCGCTAATGCCACTAAAGCTCAAAAAG
AAAACGATCTTTGCTCAACTTTTTTGCGGCATTTTCCAAAAAGCGCCACTCATGCTCGACCTGTA
GCGGCGTTTCTCAATAAGTGTC
Found at i:14414563 original size:40 final size:40
Alignment explanation
Indices: 14414479--14414574 Score: 104
Period size: 40 Copynumber: 2.4 Consensus size: 40
14414469 TTTTTGCGGC
* ** * *
14414479 GTTTTCCAAAAAGCGCCACTCATGCTTGACCTGTAGCGGC
1 GTTTTACAAAAAGCGCCACTCATGCCCGACCTGTAGCAGA
* *
14414519 GTTTTACAAAAAGCGCCACT-ATTGCCCGATCTTTAGCAGA
1 GTTTTACAAAAAGCGCCACTCA-TGCCCGACCTGTAGCAGA
*
14414559 GTTTTTCAAAAAGCGC
1 GTTTTACAAAAAGCGC
14414575 TGCTAATTCT
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.02
40 46 0.98
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (40 bp):
GTTTTACAAAAAGCGCCACTCATGCCCGACCTGTAGCAGA
Found at i:14414570 original size:156 final size:148
Alignment explanation
Indices: 14414170--14414581 Score: 357
Period size: 148 Copynumber: 2.7 Consensus size: 148
14414160 TTGACCTATA
* * * * * * * * * * * * **
14414170 GCGGCGTTTTACAGAAAGCGCCGCTATTGCTCGATCTATTGCGGCATTTGTTAAAAATCACTGCT
1 GCGGCATTTTCCAAAAAGCGCCACTATTGCTCGACCTGTAGCGGCGTTTCTCAAAAAGCGCCACT
* * * ** *
14414235 AATGCTCGATCTATTGCGGCGTTTGTTAAAAATTG-TCGCTAATGCCACTAAAGCTCAACAAAAA
66 AATGCCCGATCTATTGCAGAGTTTGTTAAAAAGCGCT-GCTAATGCCACTAAAGCTCAAAAAAAA
14414299 ACATTTTGCTCAACTTTTT
130 ACATTTTGCTCAACTTTTT
* * * * * * *
14414318 GCGGCATTTTCCAACAAGCGCCACTATTGCTCGATCTTTAGCGGCGTTTCTCAATAAGTGTCGCT
1 GCGGCATTTTCCAAAAAGCGCCACTATTGCTCGACCTGTAGCGGCGTTTCTCAAAAAGCGCCACT
** * * *
14414383 AATGTTCTATCTATTGCGGTGTTTGTTAAAAAGCGCTGCTAATGCCACTAAAGCTCAAAAAGAAA
66 AATGCCCGATCTATTGCAGAGTTTGTTAAAAAGCGCTGCTAATGCCACTAAAGCTCAAAAA-AAA
14414448 ACGATGCCGCTTTGCTCAACTTTTTT
130 AC-AT-----TTTGCTCAAC-TTTTT
* *
14414474 GCGGCGTTTTCCAAAAAGCGCCACTCA-TGCTTGACCTGTAGCGGCGTTT-TACAAAAAGCGCCA
1 GCGGCATTTTCCAAAAAGCGCCACT-ATTGCTCGACCTGTAGCGGCGTTTCT-CAAAAAGCGCCA
*
14414537 CTATTGCCCGATCT-TTAGCAGAGTTT-TTCAAAAAGCGCTGCTAAT
64 CTAATGCCCGATCTATT-GCAGAGTTTGTT-AAAAAGCGCTGCTAAT
14414582 TCTCAATTTA
Statistics
Matches: 214, Mismatches: 37, Indels: 18
0.80 0.14 0.07
Matches are distributed among these distances:
148 102 0.48
149 6 0.03
150 2 0.01
155 15 0.07
156 88 0.41
157 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (148 bp):
GCGGCATTTTCCAAAAAGCGCCACTATTGCTCGACCTGTAGCGGCGTTTCTCAAAAAGCGCCACT
AATGCCCGATCTATTGCAGAGTTTGTTAAAAAGCGCTGCTAATGCCACTAAAGCTCAAAAAAAAA
CATTTTGCTCAACTTTTT
Found at i:14414598 original size:196 final size:195
Alignment explanation
Indices: 14414318--14414738 Score: 567
Period size: 196 Copynumber: 2.2 Consensus size: 195
14414308 TCAACTTTTT
* * * * * * * *
14414318 GCGGCATTTTCCAACAAGCGCCACTATTGCTCGATCTTTAGCGGCGTTTCTCAATAAGTGTCGCT
1 GCGGCGTTTTACAAAAAGCGCCACTATTGCCCGATCTTTAGCAGAGTTTCTCAAAAAGCGTCGCT
* *
14414383 AATGTTCTATCTATTGCGGTGTTTGTTAAAAAGCGCTGCTAATGCCACTAAAGCTCAAAAAGAAA
66 AATGTTCAATCTATTGCGGTGTTTGTTAAAAAGCGCCGCTAATGCCACTAAAGCTCAAAAAGAAA
* * * *
14414448 ACGATGCCGCTTTGCTCAACTTTTTTGCGGCGTTTTCCAAAAAGCGCCACTCATGCTTGACCTGT
131 ACGACGCCGCTTTGCTCAAC-CTTTTGCGGCGTTTTCCAAAAAGCGCCACTAATGCTTGACCTAT
14414513 A
195 A
*
14414514 GCGGCGTTTTACAAAAAGCGCCACTATTGCCCGATCTTTAGCAGAGTTTTTCAAAAAGCG-CTGC
1 GCGGCGTTTTACAAAAAGCGCCACTATTGCCCGATCTTTAGCAGAGTTTCTCAAAAAGCGTC-GC
*
14414578 TAAT-TCTCAATTTATTGCGGTGTTTGTTAAAAAGCGCCGCTAATGCCACTAAAGCTCAAAAAGA
65 TAATGT-TCAATCTATTGCGGTGTTTGTTAAAAAGCGCCGCTAATGCCACTAAAGCTCAAAAAGA
* * * * * *
14414642 AAACGACGTCGTTTTGCTCAACCTTTTGTGGCGTTTTCCGAAAAGCGCCGCTAATGCTTGATCTA
129 AAACGACGCCGCTTTGCTCAACCTTTTGCGGCGTTTTCCAAAAAGCGCCACTAATGCTTGACCTA
*
14414707 TT
194 TA
* * *
14414709 GCAGCGTTTTAGAAAAAGCGCCGCTATTGC
1 GCGGCGTTTTACAAAAAGCGCCACTATTGC
14414739 TTACCTATTG
Statistics
Matches: 197, Mismatches: 26, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
195 66 0.34
196 131 0.66
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (195 bp):
GCGGCGTTTTACAAAAAGCGCCACTATTGCCCGATCTTTAGCAGAGTTTCTCAAAAAGCGTCGCT
AATGTTCAATCTATTGCGGTGTTTGTTAAAAAGCGCCGCTAATGCCACTAAAGCTCAAAAAGAAA
ACGACGCCGCTTTGCTCAACCTTTTGCGGCGTTTTCCAAAAAGCGCCACTAATGCTTGACCTATA
Found at i:14414765 original size:39 final size:40
Alignment explanation
Indices: 14414682--14414756 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
14414672 GCGTTTTCCG
*
14414682 AAAAGCGCCGCTAATGCTTGATCTATTGCAGCGTTTTAGA
1 AAAAGCGCCGCTAATGCTTGACCTATTGCAGCGTTTTAGA
* *
14414722 AAAAGCGCCGCTATTGCTT-ACCTATTGCGGCGTTT
1 AAAAGCGCCGCTAATGCTTGACCTATTGCAGCGTTT
14414757 GTTAAAAAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
39 14 0.44
40 18 0.56
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.31
Consensus pattern (40 bp):
AAAAGCGCCGCTAATGCTTGACCTATTGCAGCGTTTTAGA
Found at i:14416994 original size:29 final size:29
Alignment explanation
Indices: 14416971--14417027 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
14416961 TATTATTGTT
*
14416971 ATTATTTTATTATATTAT-AAATTAAATTG
1 ATTATATTATTATATTATGAAATT-AATTG
*
14417000 ATTATATTATTATATTATGAAATAAATT
1 ATTATATTATTATATTATGAAATTAATT
14417028 AAGAAAAGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 21 0.84
30 4 0.16
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (29 bp):
ATTATATTATTATATTATGAAATTAATTG
Found at i:14417264 original size:18 final size:19
Alignment explanation
Indices: 14417241--14417311 Score: 67
Period size: 18 Copynumber: 3.7 Consensus size: 19
14417231 TGTAATATTT
*
14417241 ATATTTGTTATTA-AATAG
1 ATATTTATTATTATAATAG
14417259 ATATTTATTATTATAATA-
1 ATATTTATTATTATAATAG
*
14417277 ATAAATATTATTATT-TAATTG
1 AT--AT-TTATTATTATAATAG
14417298 ATATTATATTATTA
1 ATATT-TATTATTA
14417312 GATAAATGAA
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
18 15 0.34
19 13 0.30
20 6 0.14
21 10 0.23
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (19 bp):
ATATTTATTATTATAATAG
Found at i:14417279 original size:22 final size:22
Alignment explanation
Indices: 14417254--14417311 Score: 63
Period size: 21 Copynumber: 2.8 Consensus size: 22
14417244 TTTGTTATTA
14417254 AATAGATATTTATTATTATAAT
1 AATAGATATTTATTATTATAAT
*
14417276 AATAAATA-TTATTATT-TAAT
1 AATAGATATTTATTATTATAAT
14417296 --T-GATATTATATTATTA
1 AATAGATATT-TATTATTA
14417312 GATAAATGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
17 3 0.10
18 2 0.06
19 7 0.23
20 4 0.13
21 8 0.26
22 7 0.23
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (22 bp):
AATAGATATTTATTATTATAAT
Found at i:14417747 original size:29 final size:29
Alignment explanation
Indices: 14417706--14417763 Score: 66
Period size: 29 Copynumber: 2.0 Consensus size: 29
14417696 TTTTTTAGTA
14417706 GGGTTCATGTTGAATA-AATGATTGAATTAG
1 GGGTTCATGTTG-ATAGAATGATTG-ATTAG
* *
14417736 GGGTTTAT-TTGATAGAATTATTGATTAG
1 GGGTTCATGTTGATAGAATGATTGATTAG
14417764 AGTTGATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
28 8 0.32
29 10 0.40
30 7 0.28
ACGTcount: A:0.31, C:0.02, G:0.26, T:0.41
Consensus pattern (29 bp):
GGGTTCATGTTGATAGAATGATTGATTAG
Found at i:14418484 original size:38 final size:38
Alignment explanation
Indices: 14418384--14418518 Score: 121
Period size: 38 Copynumber: 3.5 Consensus size: 38
14418374 CCTCGAGTCG
* * * *
14418384 ATGAGACACTGGGTGTCACTATTTTACTTCCGATAGATTCA
1 ATGAGACACTGGGTGTCA--ACTTTACTTCGGCTAGA-CCA
* *
14418425 ATGAGATACTGGGTATC-ACTTTACTTCGGCTAGACCA
1 ATGAGACACTGGGTGTCAACTTTACTTCGGCTAGACCA
* * * *
14418462 ATGAGACACTGGGTGTCAACTTTGCTTCGAACTA-TCCG
1 ATGAGACACTGGGTGTCAACTTTACTTCG-GCTAGACCA
*
14418500 ATGAGGCACTGGGTGTCAA
1 ATGAGACACTGGGTGTCAA
14418519 TCTGGTGTGT
Statistics
Matches: 79, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
37 17 0.22
38 44 0.56
39 3 0.04
41 15 0.19
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.30
Consensus pattern (38 bp):
ATGAGACACTGGGTGTCAACTTTACTTCGGCTAGACCA
Found at i:14421328 original size:40 final size:40
Alignment explanation
Indices: 14421246--14421334 Score: 115
Period size: 40 Copynumber: 2.2 Consensus size: 40
14421236 CTTTTGGACA
*
14421246 AAAAACGCCGCTAAAAATCGAGCATTAGCGGCACTTTACG
1 AAAAACGCCACTAAAAATCGAGCATTAGCGGCACTTTACG
* * * ** *
14421286 AAAATCGCCACTAAAGATCGAGTATTAGCGGCGTTTTTCG
1 AAAAACGCCACTAAAAATCGAGCATTAGCGGCACTTTACG
14421326 AAAAACGCC
1 AAAAACGCC
14421335 GCGACGCTAA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.20
Consensus pattern (40 bp):
AAAAACGCCACTAAAAATCGAGCATTAGCGGCACTTTACG
Found at i:14421428 original size:41 final size:41
Alignment explanation
Indices: 14421339--14421443 Score: 138
Period size: 41 Copynumber: 2.6 Consensus size: 41
14421329 AACGCCGCGA
* * * *
14421339 CGCTAATGCTCTGGGATTTAGCGGCATTTTTGAAAAAGTGC
1 CGCTAATTCTCAGGGTTTTAGCGGCATTTTTAAAAAAGTGC
* **
14421380 CGCTAATTCTCGGGGTTTTAGCGGTGTTTTTAAAAAAGTGC
1 CGCTAATTCTCAGGGTTTTAGCGGCATTTTTAAAAAAGTGC
*
14421421 CGCTAATTCTTAGGGTTTTAGCG
1 CGCTAATTCTCAGGGTTTTAGCG
14421444 CCACTAATGC
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 56 1.00
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.35
Consensus pattern (41 bp):
CGCTAATTCTCAGGGTTTTAGCGGCATTTTTAAAAAAGTGC
Found at i:14421493 original size:41 final size:41
Alignment explanation
Indices: 14421447--14421532 Score: 111
Period size: 41 Copynumber: 2.1 Consensus size: 41
14421437 TTTAGCGCCA
*
14421447 CTAATGCTCAGGGTTTTAGCGGCGTTTCTT-AAAAAGCACCG
1 CTAATGCTCAGGGCTTTAGCGGCGTTT-TTGAAAAAGCACCG
* ** *
14421488 CTAATGTTGTGGGCTTTAGCGGCGTTTTTGAAAAAGCTCCG
1 CTAATGCTCAGGGCTTTAGCGGCGTTTTTGAAAAAGCACCG
14421529 CTAA
1 CTAA
14421533 AAACATTTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 2 0.05
41 37 0.95
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (41 bp):
CTAATGCTCAGGGCTTTAGCGGCGTTTTTGAAAAAGCACCG
Found at i:14421506 original size:65 final size:65
Alignment explanation
Indices: 14421382--14421508 Score: 152
Period size: 65 Copynumber: 2.0 Consensus size: 65
14421372 AAAAGTGCCG
* * * ** *
14421382 CTAATTCTCGGGGTTTTAGCGGTGTTTTTAAAAAAGTGCCGCTAATTCTTAGGGTTTTAGCGCCA
1 CTAATGCTCAGGGTTTTAGCGGCGTTTTTAAAAAAGCACCGCTAATTCTTAGGGCTTTAGCGCCA
14421447 CTAATGCTCAGGGTTTTAGCGGCGTTTCTT-AAAAAGCACCGCTAATGT-TGT-GGGCTTTAGCG
1 CTAATGCTCAGGGTTTTAGCGGCGTTT-TTAAAAAAGCACCGCTAAT-TCT-TAGGGCTTTAGCG
14421509 GCGTTTTTGA
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
65 49 0.92
66 4 0.08
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (65 bp):
CTAATGCTCAGGGTTTTAGCGGCGTTTTTAAAAAAGCACCGCTAATTCTTAGGGCTTTAGCGCCA
Found at i:14421530 original size:106 final size:106
Alignment explanation
Indices: 14421341--14421532 Score: 248
Period size: 106 Copynumber: 1.8 Consensus size: 106
14421331 CGCCGCGACG
* ** * *
14421341 CTAATGCTCTGGGATTTAGCGGCATTTTTGAAAAAGTGCCGCTAATTCTCGGGGTTTTAGCGGTG
1 CTAATGCTCAGGGATTTAGCGGCATTTTTGAAAAAGCACCGCTAATTCTCGGGGCTTTAGCGGCG
14421406 TTTTTAAAAAAGTGCCGCTAATTCTTAGGGTTTTAGCGCCA
66 TTTTTAAAAAAGTGCCGCTAATTCTTAGGGTTTTAGCGCCA
* *
14421447 CTAATGCTCAGGGTTTTAGCGGCGTTTCTT-AAAAAGCACCGCTAATGT-T-GTGGGCTTTAGCG
1 CTAATGCTCAGGGATTTAGCGGCATTT-TTGAAAAAGCACCGCTAAT-TCTCG-GGGCTTTAGCG
*
14421509 GCGTTTTTGAAAAAGCT-CCGCTAA
63 GCGTTTTTAAAAAAG-TGCCGCTAA
14421533 AAACATTTTA
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
105 1 0.01
106 69 0.93
107 4 0.05
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (106 bp):
CTAATGCTCAGGGATTTAGCGGCATTTTTGAAAAAGCACCGCTAATTCTCGGGGCTTTAGCGGCG
TTTTTAAAAAAGTGCCGCTAATTCTTAGGGTTTTAGCGCCA
Found at i:14421938 original size:7 final size:7
Alignment explanation
Indices: 14421913--14422011 Score: 51
Period size: 7 Copynumber: 13.7 Consensus size: 7
14421903 TTATGGTGTA
14421913 AGGG-TT
1 AGGGTTT
*
14421919 AGGATTT
1 AGGGTTT
*
14421926 AAGGTTT
1 AGGGTTT
14421933 AGGGTTT
1 AGGGTTT
*
14421940 AGGGGTTA
1 A-GGGTTT
14421948 AGGG-TT
1 AGGGTTT
14421954 AGAGG-TT
1 AG-GGTTT
14421961 AGAGGTTT
1 AG-GGTTT
*
14421969 AGGGGTTA
1 A-GGGTTT
* *
14421977 AGAGTTA
1 AGGGTTT
*
14421984 AGGATTT
1 AGGGTTT
*
14421991 AGAGTTT
1 AGGGTTT
14421998 AGGGATTT
1 AGGG-TTT
14422006 ATGGGT
1 A-GGGT
14422012 CGAGTTAGGG
Statistics
Matches: 72, Mismatches: 14, Indels: 12
0.73 0.14 0.12
Matches are distributed among these distances:
6 6 0.08
7 43 0.60
8 19 0.26
9 4 0.06
ACGTcount: A:0.25, C:0.00, G:0.39, T:0.35
Consensus pattern (7 bp):
AGGGTTT
Found at i:14421951 original size:15 final size:15
Alignment explanation
Indices: 14421928--14421978 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
14421918 TAGGATTTAA
*
14421928 GGTTTAGGGTTTAGG
1 GGTTAAGGGTTTAGG
*
14421943 GGTTAAGGG-TTAGA
1 GGTTAAGGGTTTAGG
14421957 GGTT-AGAGGTTTAGG
1 GGTTAAG-GGTTTAGG
14421972 GGTTAAG
1 GGTTAAG
14421979 AGTTAAGGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
13 2 0.07
14 10 0.33
15 16 0.53
16 2 0.07
ACGTcount: A:0.22, C:0.00, G:0.45, T:0.33
Consensus pattern (15 bp):
GGTTAAGGGTTTAGG
Found at i:14421962 original size:21 final size:20
Alignment explanation
Indices: 14421913--14421972 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 20
14421903 TTATGGTGTA
** *
14421913 AGGGTTAGGATTTAAGGTTT
1 AGGGTTAGGGGTTAAGGGTT
14421933 AGGGTTTAGGGGTTAAGGGTT
1 AGGG-TTAGGGGTTAAGGGTT
* *
14421954 AGAGGTTAGAGGTTTAGGG
1 AG-GGTTAGGGGTTAAGGG
14421973 GTTAAGAGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
20 4 0.12
21 27 0.82
22 2 0.06
ACGTcount: A:0.23, C:0.00, G:0.43, T:0.33
Consensus pattern (20 bp):
AGGGTTAGGGGTTAAGGGTT
Found at i:14421968 original size:29 final size:29
Alignment explanation
Indices: 14421914--14422001 Score: 101
Period size: 29 Copynumber: 3.1 Consensus size: 29
14421904 TATGGTGTAA
* * *
14421914 GGGTTAGGATTTAAGGTTTAG-GGTTTAG
1 GGGTTAAGAGTTAAGGATTAGAGGTTTAG
*
14421942 GGGTTAAGGGTTAGAGG-TTAGAGGTTTAG
1 GGGTTAAGAGTTA-AGGATTAGAGGTTTAG
14421971 GGGTTAAGAGTTAAGGATTTAGA-GTTTAG
1 GGGTTAAGAGTTAAGGA-TTAGAGGTTTAG
14422000 GG
1 GG
14422002 ATTTATGGGT
Statistics
Matches: 52, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
28 17 0.33
29 30 0.58
30 5 0.10
ACGTcount: A:0.25, C:0.00, G:0.41, T:0.34
Consensus pattern (29 bp):
GGGTTAAGAGTTAAGGATTAGAGGTTTAG
Found at i:14421974 original size:22 final size:22
Alignment explanation
Indices: 14421949--14421992 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
14421939 TAGGGGTTAA
14421949 GGGTT-AGAGGTTAGAGG-TTTAG
1 GGGTTAAGA-GTTA-AGGATTTAG
14421971 GGGTTAAGAGTTAAGGATTTAG
1 GGGTTAAGAGTTAAGGATTTAG
14421993 AGTTTAGGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 3 0.15
22 14 0.70
23 3 0.15
ACGTcount: A:0.27, C:0.00, G:0.41, T:0.32
Consensus pattern (22 bp):
GGGTTAAGAGTTAAGGATTTAG
Found at i:14422285 original size:21 final size:20
Alignment explanation
Indices: 14422251--14422291 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
14422241 TATGGATTTA
*
14422251 GGGATTATGGTTTAAGGGTT
1 GGGATTAAGGTTTAAGGGTT
14422271 GGGATTTAAGGTTTAAGGGTT
1 GGGA-TTAAGGTTTAAGGGTT
14422292 AGAAGTTAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.22, C:0.00, G:0.39, T:0.39
Consensus pattern (20 bp):
GGGATTAAGGTTTAAGGGTT
Found at i:14422330 original size:22 final size:22
Alignment explanation
Indices: 14422282--14422331 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
14422272 GGATTTAAGG
* *
14422282 TTTAAGGGTTAGAAGTTAGGGG
1 TTTAGGGGTTAGAAGTTAGGGA
*
14422304 GTTAGGGGTTA-AGAGTTAGGGA
1 TTTAGGGGTTAGA-AGTTAGGGA
14422326 TTTAGG
1 TTTAGG
14422332 ATTTCAAGGG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 1 0.04
22 22 0.96
ACGTcount: A:0.26, C:0.00, G:0.42, T:0.32
Consensus pattern (22 bp):
TTTAGGGGTTAGAAGTTAGGGA
Found at i:14422696 original size:19 final size:19
Alignment explanation
Indices: 14422672--14422713 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
14422662 AATTATAAGA
*
14422672 AAAAATAAAATACAAAAAT
1 AAAAATAAAATAAAAAAAT
*
14422691 AAAAATGAAATAAAAAAAT
1 AAAAATAAAATAAAAAAAT
14422710 AAAA
1 AAAA
14422714 TTTCTAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.14
Consensus pattern (19 bp):
AAAAATAAAATAAAAAAAT
Found at i:14425954 original size:28 final size:28
Alignment explanation
Indices: 14425912--14425972 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
14425902 ATTCTTTTCT
*
14425912 TTTGACAAAGAACTT-GAGGTTGAACTGA
1 TTTGACAAAGAACTTGGA-GTTGAACTAA
* *
14425940 TTTGACTAAGGACTTGGAGTTGAACTAA
1 TTTGACAAAGAACTTGGAGTTGAACTAA
14425968 TTTGA
1 TTTGA
14425973 TTCTTGTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 27 0.93
29 2 0.07
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.33
Consensus pattern (28 bp):
TTTGACAAAGAACTTGGAGTTGAACTAA
Done.