Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62769430
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1067035 characters in sequence are not A, C, G, or T
File 51 of 206
Found at i:14427693 original size:43 final size:42
Alignment explanation
Indices: 14427638--14427872 Score: 258
Period size: 43 Copynumber: 5.5 Consensus size: 42
14427628 TAGTGGTGTT
* * *
14427638 TTTGT-GAGAAGCGCCGTTAAAGGTATCGAGCTATAGCGGCG
1 TTTGTGGAAAAGCGCCGCTAAAGGTCTCGAGCTATAGCGGCG
* *
14427679 TTTGTCGGAAAAGCGCCGCTAAAGGTCGCGATCTATAGCGGCG
1 TTTGT-GGAAAAGCGCCGCTAAAGGTCTCGAGCTATAGCGGCG
* * *
14427722 TTTGTGGTAAAAGCGCTGCTAAAGCTCTTGAGCTATAGCGGCG
1 TTTGTGG-AAAAGCGCCGCTAAAGGTCTCGAGCTATAGCGGCG
* * * *
14427765 TTTGTGGGAAAAGCACCGCTAAATGTCTTGAGCTATAGTGGCG
1 TTTGT-GGAAAAGCGCCGCTAAAGGTCTCGAGCTATAGCGGCG
*
14427808 TTTGTGGAAAAGCGCC-CTTAAAGGTCTCGAACTATAGCGGCGGCG
1 TTTGTGGAAAAGCGCCGC-TAAAGGTCTCGAGCTATA---GCGGCG
* *
14427853 TTTTTGGGAAAGCGCCGCTA
1 TTTGTGGAAAAGCGCCGCTA
14427873 TAGTTCATGG
Statistics
Matches: 163, Mismatches: 22, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
41 6 0.04
42 27 0.17
43 106 0.65
44 2 0.01
45 21 0.13
46 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (42 bp):
TTTGTGGAAAAGCGCCGCTAAAGGTCTCGAGCTATAGCGGCG
Found at i:14428944 original size:24 final size:24
Alignment explanation
Indices: 14428907--14428955 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
14428897 ATTTGAGGTC
**
14428907 ATGTATGGTTGAAAACTCTTTCAA
1 ATGTATGGCAGAAAACTCTTTCAA
*
14428931 ATGTATGGCAGAAAATTCTTTCAA
1 ATGTATGGCAGAAAACTCTTTCAA
14428955 A
1 A
14428956 GCAAAATAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (24 bp):
ATGTATGGCAGAAAACTCTTTCAA
Found at i:14443090 original size:90 final size:90
Alignment explanation
Indices: 14442937--14443116 Score: 360
Period size: 90 Copynumber: 2.0 Consensus size: 90
14442927 CAAATTTGCT
14442937 TACTAGGAGATGGATGAATATGATCAAATTTTGCAGCTACTTTATCAACTTTTATTCTAAAAGCA
1 TACTAGGAGATGGATGAATATGATCAAATTTTGCAGCTACTTTATCAACTTTTATTCTAAAAGCA
14443002 AAGAAAGCATTCGTTTGTTTGCTCA
66 AAGAAAGCATTCGTTTGTTTGCTCA
14443027 TACTAGGAGATGGATGAATATGATCAAATTTTGCAGCTACTTTATCAACTTTTATTCTAAAAGCA
1 TACTAGGAGATGGATGAATATGATCAAATTTTGCAGCTACTTTATCAACTTTTATTCTAAAAGCA
14443092 AAGAAAGCATTCGTTTGTTTGCTCA
66 AAGAAAGCATTCGTTTGTTTGCTCA
14443117 ATGTATGAGC
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
90 90 1.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (90 bp):
TACTAGGAGATGGATGAATATGATCAAATTTTGCAGCTACTTTATCAACTTTTATTCTAAAAGCA
AAGAAAGCATTCGTTTGTTTGCTCA
Found at i:14446478 original size:9 final size:9
Alignment explanation
Indices: 14446466--14446496 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
14446456 ATTTAAATTG
14446466 TTTGGTTAA
1 TTTGGTTAA
14446475 TTTGGTTAA
1 TTTGGTTAA
*
14446484 TTTGGTTAT
1 TTTGGTTAA
14446493 TTTG
1 TTTG
14446497 AAATTAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.16, C:0.00, G:0.23, T:0.61
Consensus pattern (9 bp):
TTTGGTTAA
Found at i:14450315 original size:20 final size:20
Alignment explanation
Indices: 14450286--14450351 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 20
14450276 AGAAAAAGCT
* *
14450286 TTTACTAATATTTCTAACGA
1 TTTACCAATATTTCTAAGGA
*
14450306 TTTACCAATA--T-T--GGC
1 TTTACCAATATTTCTAAGGA
14450321 TTTACCAATATTTCTAAGGA
1 TTTACCAATATTTCTAAGGA
14450341 TTTACCAATAT
1 TTTACCAATAT
14450352 CGTTAGATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
15 11 0.30
17 2 0.05
18 2 0.05
20 22 0.59
ACGTcount: A:0.33, C:0.17, G:0.08, T:0.42
Consensus pattern (20 bp):
TTTACCAATATTTCTAAGGA
Found at i:14456197 original size:16 final size:16
Alignment explanation
Indices: 14456173--14456207 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
14456163 TTCGCTGTAT
14456173 TAGAATAGAGGCGTAA
1 TAGAATAGAGGCGTAA
*
14456189 TAGATTAGAGGCGTAA
1 TAGAATAGAGGCGTAA
14456205 TAG
1 TAG
14456208 CAAATGAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.40, C:0.06, G:0.31, T:0.23
Consensus pattern (16 bp):
TAGAATAGAGGCGTAA
Found at i:14456249 original size:45 final size:44
Alignment explanation
Indices: 14456185--14456281 Score: 133
Period size: 44 Copynumber: 2.2 Consensus size: 44
14456175 GAATAGAGGC
*
14456185 GTAATAGATTAGAGGCGTAATAGCAAATGAAT-TGTTTGGTTGAAT
1 GTAATAGAATAGAGGCGTAATAGC-AAT-AATGTGTTTGGTTGAAT
**
14456230 GTAATAGAATAGAGGCGTAATAGCAATCTTGTGTTTGGTTGAAT
1 GTAATAGAATAGAGGCGTAATAGCAATAATGTGTTTGGTTGAAT
*
14456274 GGAATAGA
1 GTAATAGA
14456282 GGTGTAATAG
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.49
45 23 0.49
ACGTcount: A:0.35, C:0.05, G:0.28, T:0.32
Consensus pattern (44 bp):
GTAATAGAATAGAGGCGTAATAGCAATAATGTGTTTGGTTGAAT
Found at i:14456456 original size:16 final size:16
Alignment explanation
Indices: 14456419--14456460 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
14456409 TTAATCATAT
*
14456419 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
14456435 TT-AAATATATTATAA
1 TTAAAATATATTATAA
14456450 TTAAAATATAT
1 TTAAAATATAT
14456461 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:14456467 original size:14 final size:15
Alignment explanation
Indices: 14456428--14456469 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
14456418 TTTAAACATA
*
14456428 ATTATTATTAAATAT
1 ATTATAATTAAATAT
14456443 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
14456457 A-TATAATTTAATA
1 ATTATAATTAAATA
14456470 AAATTATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:14456561 original size:120 final size:119
Alignment explanation
Indices: 14456417--14456777 Score: 582
Period size: 120 Copynumber: 3.0 Consensus size: 119
14456407 ATTTAATCAT
*
14456417 ATTTAAACATAATTATTATTAAATAT-ATTATAATTAAAATATATAATTTAATAAAATTATTAAT
1 ATTT-AACATAATTATTATTAAATATAATT-TAATTAAAATATATAATTTAATAAAATTCTTAAT
* * * * *
14456481 AATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATA
64 ATTAAATATTCTTATATGAATTTAATAAAATCATAATATAT-ATACTATATAATATA
*
14456538 ATTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATAT
1 ATTTAACATAATTATTATTAAATATAATTTAATTAAAATATATAATTTAATAAAATTCTTAATAT
14456603 TAAATATTCTTATATGAATTTAATAAAATCATAATATATAGTACTATATAATATA
66 TAAATATTCTTATATGAATTTAATAAAATCATAATATATA-TACTATATAATATA
*
14456658 ATTTAAAATAATTATTATTAAATATAATTTAA-TAAATATATATAATTTAATAAAATTCTTAATA
1 ATTTAACATAATTATTATTAAATATAATTTAATTAAA-ATATATAATTTAATAAAATTCTTAATA
14456722 TTAAATATTCTTATATGAATTTAATAAAATCATAATATATAATACTATATAATATA
65 TTAAATATTCTTATATGAATTTAATAAAATCATAATATAT-ATACTATATAATATA
14456778 GATTAATAAT
Statistics
Matches: 227, Mismatches: 9, Indels: 9
0.93 0.04 0.04
Matches are distributed among these distances:
119 4 0.02
120 215 0.95
121 8 0.04
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.43
Consensus pattern (119 bp):
ATTTAACATAATTATTATTAAATATAATTTAATTAAAATATATAATTTAATAAAATTCTTAATAT
TAAATATTCTTATATGAATTTAATAAAATCATAATATATATACTATATAATATA
Found at i:14456623 original size:38 final size:38
Alignment explanation
Indices: 14456576--14456765 Score: 142
Period size: 38 Copynumber: 4.9 Consensus size: 38
14456566 TTAATAAAAA
*
14456576 TATATAATTTAATAAAATTCTTAATATTA-AATATTCT
1 TATATAATTTAATAAAATTCTTAATATTATAATATTAT
* *
14456613 TATATGAATTTAATAAAA-TCATAATA-TATAGTACTATAT
1 TATAT-AATTTAATAAAATTCTTAATATTATAATA-T-TAT
* * * * *
14456652 AATATAATTTAA-AATAATTATTATTAAATATAATTTAATAAAT
1 TATATAATTTAATAA-AATTCTTAAT-ATTATAA--T-AT-TAT
*
14456695 ATATATAATTTAATAAAATTCTTAATATTA-AATATTCT
1 -TATATAATTTAATAAAATTCTTAATATTATAATATTAT
*
14456733 TATATGAATTTAATAAAA-TCATAATA-TATAATA
1 TATAT-AATTTAATAAAATTCTTAATATTATAATA
14456766 CTATATAATA
Statistics
Matches: 122, Mismatches: 16, Indels: 30
0.73 0.10 0.18
Matches are distributed among these distances:
36 4 0.03
37 33 0.27
38 35 0.29
39 12 0.10
40 2 0.02
41 4 0.03
42 2 0.02
43 8 0.07
44 20 0.16
45 2 0.02
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.44
Consensus pattern (38 bp):
TATATAATTTAATAAAATTCTTAATATTATAATATTAT
Found at i:14456709 original size:28 final size:26
Alignment explanation
Indices: 14456651--14456714 Score: 67
Period size: 28 Copynumber: 2.4 Consensus size: 26
14456641 TAGTACTATA
*
14456651 TAATATAATTTAAAATAATTATTATT
1 TAATATAATTTAAAATAATTATAATT
*
14456677 AAATATAATTTAATAA-ATATATATAATT
1 TAATATAATTTAA-AATA-AT-TATAATT
*
14456705 TAATAAAATT
1 TAATATAATT
14456715 CTTAATATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
26 13 0.42
27 4 0.13
28 14 0.45
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (26 bp):
TAATATAATTTAAAATAATTATAATT
Found at i:14460069 original size:11 final size:10
Alignment explanation
Indices: 14460056--14460132 Score: 69
Period size: 9 Copynumber: 8.1 Consensus size: 10
14460046 TTAAAAAAGT
14460056 ATTTTAAAAA
1 ATTTTAAAAA
14460066 TATTTT--AAA
1 -ATTTTAAAAA
14460075 A-TTTAAAAA
1 ATTTTAAAAA
*
14460084 AATTTAAAAA
1 ATTTTAAAAA
14460094 GTATTTTAAAAA
1 --ATTTTAAAAA
14460106 ATTTT--AAA
1 ATTTTAAAAA
14460114 A-TTTAAAAA
1 ATTTTAAAAA
14460123 A-TTTAAAAA
1 ATTTTAAAAA
14460132 A
1 A
14460133 AGTATTTTAA
Statistics
Matches: 58, Mismatches: 1, Indels: 16
0.77 0.01 0.21
Matches are distributed among these distances:
7 6 0.10
8 5 0.09
9 20 0.34
10 13 0.22
11 5 0.09
12 9 0.16
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (10 bp):
ATTTTAAAAA
Found at i:14460085 original size:10 final size:10
Alignment explanation
Indices: 14460072--14460133 Score: 67
Period size: 10 Copynumber: 6.4 Consensus size: 10
14460062 AAAATATTTT
14460072 AAAATTTAAA
1 AAAATTTAAA
14460082 AAAATTTAAA
1 AAAATTTAAA
* *
14460092 AAGTATTTTAA
1 AA-AATTTAAA
*
14460103 AAAATTT--T
1 AAAATTTAAA
14460111 AAAATTT-AA
1 AAAATTTAAA
14460120 AAAATTTAAA
1 AAAATTTAAA
14460130 AAAA
1 AAAA
14460134 GTATTTTAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
8 7 0.16
9 7 0.16
10 22 0.50
11 8 0.18
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.34
Consensus pattern (10 bp):
AAAATTTAAA
Found at i:14460096 original size:40 final size:40
Alignment explanation
Indices: 14460023--14460156 Score: 182
Period size: 40 Copynumber: 3.3 Consensus size: 40
14460013 ATCAAAATTT
* *
14460023 TATTTTAAAAATTAAAACAAAAATTAAAAAAGTATTTTAAAAA
1 TATTTT-AAAATT-TAA-AAAAATTTAAAAAGTATTTTAAAAA
14460066 TATTTTAAAATTTAAAAAAATTTAAAAAGTATTTTAAAAA
1 TATTTTAAAATTTAAAAAAATTTAAAAAGTATTTTAAAAA
*
14460106 -ATTTTAAAATTT-AAAAAATTTAAAAAAAGTATTTTAAAAG
1 TATTTTAAAATTTAAAAAAATTT--AAAAAGTATTTTAAAAA
14460146 TATTTTAAAAT
1 TATTTTAAAAT
14460157 AAAAAATAAA
Statistics
Matches: 85, Mismatches: 3, Indels: 8
0.89 0.03 0.08
Matches are distributed among these distances:
38 9 0.11
39 12 0.14
40 40 0.47
41 12 0.14
42 6 0.07
43 6 0.07
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (40 bp):
TATTTTAAAATTTAAAAAAATTTAAAAAGTATTTTAAAAA
Found at i:14460114 original size:29 final size:27
Alignment explanation
Indices: 14460058--14460173 Score: 81
Period size: 23 Copynumber: 4.5 Consensus size: 27
14460048 AAAAAAGTAT
14460058 TTTAAAAATATTTTAAAATTTAAAAAAA
1 TTTAAAAATATTTTAAAATTT-AAAAAA
*
14460086 TTTAAAAAGTATTTTAAAAAATTT-TAAAA
1 TTTAAAAA-TATTTT--AAAATTTAAAAAA
* *
14460115 TTTAAAAA-A-TTTAAAA---AAAGTAT
1 TTTAAAAATATTTTAAAATTTAAA-AAA
*
14460138 TTTAAAAGTATTTTAAAA--TAAAAAA
1 TTTAAAAATATTTTAAAATTTAAAAAA
14460163 --TAAAAATATTT
1 TTTAAAAATATTT
14460174 ATTATATTCG
Statistics
Matches: 72, Mismatches: 8, Indels: 21
0.71 0.08 0.21
Matches are distributed among these distances:
22 1 0.01
23 18 0.25
24 5 0.07
25 8 0.11
26 6 0.08
27 1 0.01
28 8 0.11
29 18 0.25
31 7 0.10
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.39
Consensus pattern (27 bp):
TTTAAAAATATTTTAAAATTTAAAAAA
Found at i:14460144 original size:11 final size:11
Alignment explanation
Indices: 14460130--14460155 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
14460120 AAAATTTAAA
14460130 AAAAGTATTTT
1 AAAAGTATTTT
14460141 AAAAGTATTTT
1 AAAAGTATTTT
14460152 AAAA
1 AAAA
14460156 TAAAAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:14463648 original size:16 final size:16
Alignment explanation
Indices: 14463627--14463657 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
14463617 ATACTTCAAT
14463627 TTCAGTGGTTAAGTGG
1 TTCAGTGGTTAAGTGG
14463643 TTCAGTGGTTAAGTG
1 TTCAGTGGTTAAGTG
14463658 TCTGGTTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.06, G:0.35, T:0.39
Consensus pattern (16 bp):
TTCAGTGGTTAAGTGG
Found at i:14464972 original size:27 final size:27
Alignment explanation
Indices: 14464929--14464986 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 27
14464919 TTTGTGATTC
14464929 TGGCAGTTTACTCGCAAAA-TCTATTTT
1 TGGCAGTTTACTCGCAAAATTC-ATTTT
*
14464956 TGGCAGTTTAACT-GCAATATTCATTTT
1 TGGCAGTTT-ACTCGCAAAATTCATTTT
14464983 TGGC
1 TGGC
14464987 GATTTTTTGC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
27 23 0.82
28 5 0.18
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.41
Consensus pattern (27 bp):
TGGCAGTTTACTCGCAAAATTCATTTT
Found at i:14470475 original size:3 final size:3
Alignment explanation
Indices: 14470467--14470499 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
14470457 CAGTCCCTCA
14470467 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
14470500 GTGAATATAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:14477615 original size:35 final size:35
Alignment explanation
Indices: 14477576--14477642 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
14477566 GTGAACATCA
14477576 TCCCATTGAACTATTTCAACTTCGAGACATCTTCG
1 TCCCATTGAACTATTTCAACTTCGAGACATCTTCG
* *
14477611 TCCCATTGAACTATTTCAACTTTGAGATATCT
1 TCCCATTGAACTATTTCAACTTCGAGACATCT
14477643 ACTTTAGGCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.27, C:0.25, G:0.10, T:0.37
Consensus pattern (35 bp):
TCCCATTGAACTATTTCAACTTCGAGACATCTTCG
Found at i:14483238 original size:9 final size:9
Alignment explanation
Indices: 14483216--14483288 Score: 53
Period size: 8 Copynumber: 8.0 Consensus size: 9
14483206 TATAACGTAC
*
14483216 AATATTATTA
1 AATA-TATTT
14483226 AATATATTT
1 AATATATTT
*
14483235 AATA-ATAT
1 AATATATTT
*
14483243 AATAAATTATT
1 AATATA-T-TT
14483254 AATATATTT
1 AATATATTT
14483263 AATATAATTT
1 AATAT-ATTT
*
14483273 ATTAT-TTT
1 AATATATTT
14483281 AATA-ATTT
1 AATATATTT
14483289 TTTTGATATT
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
8 16 0.31
9 16 0.31
10 14 0.27
11 6 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (9 bp):
AATATATTT
Found at i:14484777 original size:37 final size:37
Alignment explanation
Indices: 14484735--14484810 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 37
14484725 CGAAGTATAT
* * *
14484735 AAATTGCATCCAACACTCATCTGTATAACTGAAATAA
1 AAATTGCATCCAACACTAATCAGTATAACCGAAATAA
* *
14484772 AAATTGCATCCAGCGCTAATCAGTATAACCGAAATAA
1 AAATTGCATCCAACACTAATCAGTATAACCGAAATAA
14484809 AA
1 AA
14484811 CTTGTGCCCT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.45, C:0.21, G:0.11, T:0.24
Consensus pattern (37 bp):
AAATTGCATCCAACACTAATCAGTATAACCGAAATAA
Found at i:14497557 original size:27 final size:27
Alignment explanation
Indices: 14497519--14497584 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
14497509 TCCATTCAGT
* * *
14497519 GTTCACCACAAAAGCATTCCTTTTAGA
1 GTTCGCCACAAAAGAATTCCTTTTAAA
* *
14497546 GTTCGCTACAAATGAATTCCTTTTAAA
1 GTTCGCCACAAAAGAATTCCTTTTAAA
14497573 GTTCGCCACAAA
1 GTTCGCCACAAA
14497585 GGCTATTATT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.33, C:0.24, G:0.12, T:0.30
Consensus pattern (27 bp):
GTTCGCCACAAAAGAATTCCTTTTAAA
Found at i:14497602 original size:27 final size:26
Alignment explanation
Indices: 14497567--14497618 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
14497557 ATGAATTCCT
*
14497567 TTTAAAGTTCGCCACAAAGGCTATTA
1 TTTAAAGTTCACCACAAAGGCTATTA
*
14497593 TTTAAGAGTTCACCACAAAGGTTATT
1 TTTAA-AGTTCACCACAAAGGCTATT
14497619 CTTAGTTGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 5 0.22
27 18 0.78
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (26 bp):
TTTAAAGTTCACCACAAAGGCTATTA
Found at i:14501021 original size:36 final size:36
Alignment explanation
Indices: 14500975--14501046 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
14500965 TGTGGCATAT
14500975 TATTTGGGAAGCCTTAGTGGCGAAGTTATCTGGAAA
1 TATTTGGGAAGCCTTAGTGGCGAAGTTATCTGGAAA
14501011 TATTTGGGAAGCCTTAGTGGCGAAGTTATCTGGAAA
1 TATTTGGGAAGCCTTAGTGGCGAAGTTATCTGGAAA
14501047 GGCTTTGACA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.28, C:0.11, G:0.31, T:0.31
Consensus pattern (36 bp):
TATTTGGGAAGCCTTAGTGGCGAAGTTATCTGGAAA
Found at i:14509417 original size:19 final size:20
Alignment explanation
Indices: 14509393--14509432 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
14509383 TAAATTGTAT
*
14509393 AAAATTGAAAACT-TAAATA
1 AAAATTAAAAACTCTAAATA
*
14509412 AAAATTAAAAATTCTAAATA
1 AAAATTAAAAACTCTAAATA
14509432 A
1 A
14509433 TATAAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.28
Consensus pattern (20 bp):
AAAATTAAAAACTCTAAATA
Found at i:14509599 original size:29 final size:29
Alignment explanation
Indices: 14509531--14509601 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 29
14509521 TTATAAGCAA
*
14509531 ATTTCAATAATTTATAAAATTTTATAAAAT
1 ATTTCAA-ATTTTATAAAATTTTATAAAAT
**
14509561 ATTTGTAATTTTATCAAAA-TTTA-AATAAT
1 ATTTCAAATTTTAT-AAAATTTTATAA-AAT
14509590 ATTTCAAATTTT
1 ATTTCAAATTTT
14509602 TAATTCTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
28 2 0.06
29 23 0.68
30 9 0.26
ACGTcount: A:0.45, C:0.04, G:0.01, T:0.49
Consensus pattern (29 bp):
ATTTCAAATTTTATAAAATTTTATAAAAT
Found at i:14516323 original size:15 final size:14
Alignment explanation
Indices: 14516302--14516337 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
14516292 ATAATCCTTA
*
14516302 ATAATTATCTTAAT
1 ATAATTATCCTAAT
14516316 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
14516331 ATAATTA
1 ATAATTA
14516338 AAATATAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:14520760 original size:6 final size:6
Alignment explanation
Indices: 14520749--14520775 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
14520739 AAATGGTTAA
14520749 AAAAAT AAAAAT AAAAAT AAAAAT AAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAA
14520776 GTAAAAATGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:14521575 original size:37 final size:39
Alignment explanation
Indices: 14521534--14521654 Score: 97
Period size: 40 Copynumber: 3.0 Consensus size: 39
14521524 GAATCGACTA
*
14521534 TGTTTA-GCAC-TAGTATGCGATTCGAG-ATAGCTTCGGC
1 TGTTTAGGCACTTAGTATGCAATT-GAGAATAGCTTCGGC
* *
14521571 TGTTTATGGCACTTAGTGTGCAATTGAGAATAGCTTCGTC
1 TGTTTA-GGCACTTAGTATGCAATTGAGAATAGCTTCGGC
* * *
14521611 TATATATATGACACTTAGCATGCAAGATTGAG-ATAGCTTCGGC
1 TGT-T-TA-GGCACTTAGTATGC-A-ATTGAGAATAGCTTCGGC
14521654 T
1 T
14521655 ATGTAAGGTA
Statistics
Matches: 68, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
37 6 0.09
39 7 0.10
40 22 0.32
41 1 0.01
42 14 0.21
43 12 0.18
44 6 0.09
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.34
Consensus pattern (39 bp):
TGTTTAGGCACTTAGTATGCAATTGAGAATAGCTTCGGC
Found at i:14521635 original size:42 final size:43
Alignment explanation
Indices: 14521552--14521656 Score: 119
Period size: 40 Copynumber: 2.5 Consensus size: 43
14521542 ACTAGTATGC
* * **
14521552 GATTCGAGATAGCTTCGGCTGT-T-TATGGCACTTAGTGTGC-A
1 GATT-GAGATAGCTTCGGCTATATATATGACACTTAGCATGCAA
*
14521593 -ATTGAGAATAGCTTCGTCTATATATATGACACTTAGCATGCAA
1 GATTGAG-ATAGCTTCGGCTATATATATGACACTTAGCATGCAA
14521636 GATTGAGATAGCTTCGGCTAT
1 GATTGAGATAGCTTCGGCTAT
14521657 GTAAGGTACT
Statistics
Matches: 53, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
39 3 0.06
40 15 0.28
41 1 0.02
42 14 0.26
43 14 0.26
44 6 0.11
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (43 bp):
GATTGAGATAGCTTCGGCTATATATATGACACTTAGCATGCAA
Found at i:14522308 original size:11 final size:11
Alignment explanation
Indices: 14522294--14522335 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
14522284 ATGCTGTCTG
14522294 AATGTTGTTTA
1 AATGTTGTTTA
*
14522305 AATGCTGTCTT-
1 AATGTTGT-TTA
*
14522316 AATGTTGGTTA
1 AATGTTGTTTA
14522327 AATGTTGTT
1 AATGTTGTT
14522336 CGTTTTTGAG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
10 2 0.08
11 21 0.84
12 2 0.08
ACGTcount: A:0.24, C:0.05, G:0.21, T:0.50
Consensus pattern (11 bp):
AATGTTGTTTA
Found at i:14522311 original size:22 final size:22
Alignment explanation
Indices: 14522283--14522330 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
14522273 TTAGCATACT
*
14522283 AATGCTGTCTGAATGTTGTTTA
1 AATGCTGTCTGAATGTTGGTTA
*
14522305 AATGCTGTCTTAATGTTGGTTA
1 AATGCTGTCTGAATGTTGGTTA
14522327 AATG
1 AATG
14522331 TTGTTCGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.25, C:0.08, G:0.23, T:0.44
Consensus pattern (22 bp):
AATGCTGTCTGAATGTTGGTTA
Found at i:14522348 original size:69 final size:69
Alignment explanation
Indices: 14522247--14522430 Score: 273
Period size: 69 Copynumber: 2.7 Consensus size: 69
14522237 ATGCTATCCG
* *
14522247 AATGTTGGTTAAACGTTGTTCGTTTTTTAGCATACTAATGCTGTCTGAATGTTGTTTAAATGCTG
1 AATGTTGGTTAAATGTTGTTCGTTTTTGAGCATACTAATGCTGTCTGAATGTTGTTTAAATGCTG
*
14522312 -TCTT
66 TTC-A
* * *
14522316 AATGTTGGTTAAATGTTGTTCGTTTTTGAGCATACTAATGTTGTCCGAATGTTGTTTAAATGTTG
1 AATGTTGGTTAAATGTTGTTCGTTTTTGAGCATACTAATGCTGTCTGAATGTTGTTTAAATGCTG
14522381 TTCA
66 TTCA
*
14522385 AATGTTGGTTAAATGTTGTTCATTTTTGAGCATA-TCAATGCTGTCT
1 AATGTTGGTTAAATGTTGTTCGTTTTTGAGCATACT-AATGCTGTCT
14522431 AAATTGGTAC
Statistics
Matches: 104, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
68 1 0.01
69 101 0.97
70 2 0.02
ACGTcount: A:0.23, C:0.10, G:0.21, T:0.46
Consensus pattern (69 bp):
AATGTTGGTTAAATGTTGTTCGTTTTTGAGCATACTAATGCTGTCTGAATGTTGTTTAAATGCTG
TTCA
Found at i:14522377 original size:11 final size:11
Alignment explanation
Indices: 14522363--14522404 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
14522353 ATGTTGTCCG
14522363 AATGTTGTTTA
1 AATGTTGTTTA
*
14522374 AATGTTGTTCA
1 AATGTTGTTTA
*
14522385 AATGTTGGTTA
1 AATGTTGTTTA
14522396 AATGTTGTT
1 AATGTTGTT
14522405 CATTTTTGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.26, C:0.02, G:0.21, T:0.50
Consensus pattern (11 bp):
AATGTTGTTTA
Found at i:14522404 original size:22 final size:22
Alignment explanation
Indices: 14522352--14522406 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
14522342 TGAGCATACT
* * *
14522352 AATGTTGTCCGAATGTTGTTTA
1 AATGTTGTTCAAATGTTGGTTA
14522374 AATGTTGTTCAAATGTTGGTTA
1 AATGTTGTTCAAATGTTGGTTA
14522396 AATGTTGTTCA
1 AATGTTGTTCA
14522407 TTTTTGAGCA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.25, C:0.07, G:0.22, T:0.45
Consensus pattern (22 bp):
AATGTTGTTCAAATGTTGGTTA
Found at i:14523517 original size:12 final size:12
Alignment explanation
Indices: 14523500--14523524 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14523490 AAACTTAACA
14523500 TTTGGTACCAAT
1 TTTGGTACCAAT
14523512 TTTGGTACCAAT
1 TTTGGTACCAAT
14523524 T
1 T
14523525 GTATCACTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.44
Consensus pattern (12 bp):
TTTGGTACCAAT
Found at i:14525602 original size:17 final size:18
Alignment explanation
Indices: 14525568--14525602 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
14525558 TTGATCTAAA
*
14525568 TTAATAATTTCATTCAAT
1 TTAATAATTTCATACAAT
14525586 TTAATAATTT-ATACAAT
1 TTAATAATTTCATACAAT
14525603 AAAACAATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (18 bp):
TTAATAATTTCATACAAT
Found at i:14526880 original size:38 final size:38
Alignment explanation
Indices: 14526831--14526928 Score: 160
Period size: 38 Copynumber: 2.6 Consensus size: 38
14526821 AATGCAAAAA
* *
14526831 CAGTGGACATGCTTTACATGTATTCAGTTCAAAACTAC
1 CAGTAGACATGCTTAACATGTATTCAGTTCAAAACTAC
* *
14526869 CAGTAGACATGCTTAACATGTATTCAGTTCAACACTAG
1 CAGTAGACATGCTTAACATGTATTCAGTTCAAAACTAC
14526907 CAGTAGACATGCTTAACATGTA
1 CAGTAGACATGCTTAACATGTA
14526929 CTCAATAGGG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 56 1.00
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (38 bp):
CAGTAGACATGCTTAACATGTATTCAGTTCAAAACTAC
Found at i:14528208 original size:2 final size:2
Alignment explanation
Indices: 14528201--14528289 Score: 178
Period size: 2 Copynumber: 44.5 Consensus size: 2
14528191 TTGAAGGGTT
14528201 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
14528243 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
14528285 GA GA G
1 GA GA G
14528290 GAGTAGTAGT
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 87 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:14533198 original size:51 final size:52
Alignment explanation
Indices: 14533143--14533241 Score: 130
Period size: 52 Copynumber: 1.9 Consensus size: 52
14533133 ACAAATTTAG
**
14533143 CCCTCAA-ATTTCACATATT-TATCAATTTAGTCATAATTTTAAAAAAATTAA
1 CCCTCAACATTT-ACATATTGTATCAATTTAGTCATAATACTAAAAAAATTAA
* * *
14533194 CCCTCAACATTTACATATTGTCTCAATTTGGTCCTAATACTAAAAAAA
1 CCCTCAACATTTACATATTGTATCAATTTAGTCATAATACTAAAAAAA
14533242 AACCAAAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
51 14 0.34
52 27 0.66
ACGTcount: A:0.40, C:0.19, G:0.04, T:0.36
Consensus pattern (52 bp):
CCCTCAACATTTACATATTGTATCAATTTAGTCATAATACTAAAAAAATTAA
Found at i:14535430 original size:17 final size:17
Alignment explanation
Indices: 14535405--14535438 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14535395 TTTTTCTCAA
*
14535405 GTATTATTGATAATTTT
1 GTATAATTGATAATTTT
*
14535422 GTATAATTGATTATTTT
1 GTATAATTGATAATTTT
14535439 TAGAATTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.59
Consensus pattern (17 bp):
GTATAATTGATAATTTT
Found at i:14535913 original size:21 final size:21
Alignment explanation
Indices: 14535862--14535914 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
14535852 TGAAGTTGAG
*
14535862 AAATGG-GTTGTTGAATTTGC
1 AAATGGTGTTGTCGAATTTGC
* *
14535882 TAATGGTTGTTGTCGATTTTGC
1 AAATGG-TGTTGTCGAATTTGC
14535904 AAATGGTGTTG
1 AAATGGTGTTG
14535915 AAATTGGAGA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 5 0.19
21 5 0.19
22 17 0.63
ACGTcount: A:0.21, C:0.06, G:0.30, T:0.43
Consensus pattern (21 bp):
AAATGGTGTTGTCGAATTTGC
Found at i:14537791 original size:19 final size:19
Alignment explanation
Indices: 14537757--14537796 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
14537747 AATTGGACAA
14537757 TTTAAAAATAATTTTAATTT
1 TTTAAAAATAATTTT-ATTT
*
14537777 TTTAAAGAT-ATTTTATTT
1 TTTAAAAATAATTTTATTT
14537795 TT
1 TT
14537797 AGCTGATGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 5 0.26
20 8 0.42
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (19 bp):
TTTAAAAATAATTTTATTT
Found at i:14539985 original size:20 final size:21
Alignment explanation
Indices: 14539942--14539987 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
14539932 AAAAAAATTC
*
14539942 AAAAAAATTTCAAATTTTCTT
1 AAAAAAATTTCAAATTTTCAT
14539963 AAAAAAA-TTCAAATATTT-AT
1 AAAAAAATTTCAAAT-TTTCAT
14539983 AAAAA
1 AAAAA
14539988 TTCCAAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 13 0.57
21 10 0.43
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.35
Consensus pattern (21 bp):
AAAAAAATTTCAAATTTTCAT
Found at i:14540003 original size:20 final size:18
Alignment explanation
Indices: 14539965--14540003 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
14539955 ATTTTCTTAA
*
14539965 AAAAATTCAAATATTTAT
1 AAAAATTCAAATATATAT
14539983 AAAAATTCCAAATTATATAT
1 AAAAATT-CAAA-TATATAT
14540003 A
1 A
14540004 TATTTTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 4 0.22
20 7 0.39
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (18 bp):
AAAAATTCAAATATATAT
Found at i:14557428 original size:16 final size:16
Alignment explanation
Indices: 14557407--14557459 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
14557397 AAACCAAAAT
14557407 ATAAAAAATATATATA
1 ATAAAAAATATATATA
* *
14557423 ATAAAAAAAATAAATA
1 ATAAAAAATATATATA
* *
14557439 ATAATATATATATA-A
1 ATAAAAAATATATATA
14557454 ATAAAA
1 ATAAAA
14557460 TGTCCAGTAA
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
15 6 0.20
16 24 0.80
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (16 bp):
ATAAAAAATATATATA
Found at i:14557430 original size:25 final size:27
Alignment explanation
Indices: 14557402--14557460 Score: 61
Period size: 25 Copynumber: 2.3 Consensus size: 27
14557392 TATTAAAACC
*
14557402 AAAATATAAAAAATATATATA-A--TAA
1 AAAAAATAAAAAATA-ATATATATATAA
*
14557427 AAAAAATAAATAATAATATATATATAA
1 AAAAAATAAAAAATAATATATATATAA
*
14557454 ATAAAAT
1 AAAAAAT
14557461 GTCCAGTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
24 5 0.18
25 14 0.50
27 9 0.32
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (27 bp):
AAAAAATAAAAAATAATATATATATAA
Found at i:14563277 original size:19 final size:19
Alignment explanation
Indices: 14563262--14563323 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
14563252 GGAAAAAATC
**
14563262 AAAATCAAAATCAAAATTA
1 AAAATCAAAATCAAAAGCA
* ** *
14563281 AAAAACAAAAAGAAAAAGAA
1 AAAATC-AAAATCAAAAGCA
*
14563301 AAAATCAAAGTCAAAAGCA
1 AAAATCAAAATCAAAAGCA
14563320 AAAA
1 AAAA
14563324 GAGAAATCAA
Statistics
Matches: 32, Mismatches: 10, Indels: 2
0.73 0.23 0.05
Matches are distributed among these distances:
19 18 0.56
20 14 0.44
ACGTcount: A:0.74, C:0.10, G:0.06, T:0.10
Consensus pattern (19 bp):
AAAATCAAAATCAAAAGCA
Found at i:14563345 original size:29 final size:26
Alignment explanation
Indices: 14563288--14563350 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 26
14563278 TTAAAAAACA
14563288 AAAAG-AAAAAGAAAAAATCAAAGTC
1 AAAAGCAAAAAGAAAAAATCAAAGTC
*
14563313 AAAAGCAAAAAGAGAAATCAATCAAAGTT
1 AAAAGCAAAAAGA-AAA--AATCAAAGTC
14563342 AAAA-CAAAA
1 AAAAGCAAAA
14563351 TGTGAAAAGA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
25 5 0.15
26 7 0.21
27 3 0.09
28 5 0.15
29 13 0.39
ACGTcount: A:0.70, C:0.10, G:0.11, T:0.10
Consensus pattern (26 bp):
AAAAGCAAAAAGAAAAAATCAAAGTC
Found at i:14564245 original size:7 final size:7
Alignment explanation
Indices: 14564228--14564264 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
14564218 CTGAGTCAAA
14564228 AAAAATG
1 AAAAATG
14564235 -AAAATG
1 AAAAATG
14564241 AAAAATG
1 AAAAATG
14564248 AAAAATG
1 AAAAATG
*
14564255 -AGAATG
1 AAAAATG
14564261 AAAA
1 AAAA
14564265 TTGGAAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
6 11 0.42
7 15 0.58
ACGTcount: A:0.70, C:0.00, G:0.16, T:0.14
Consensus pattern (7 bp):
AAAAATG
Found at i:14564246 original size:13 final size:13
Alignment explanation
Indices: 14564229--14564279 Score: 52
Period size: 13 Copynumber: 4.0 Consensus size: 13
14564219 TGAGTCAAAA
14564229 AAAATG-AAAATG
1 AAAATGAAAAATG
14564241 AAAAATGAAAAATG
1 -AAAATGAAAAATG
* *
14564255 AGAATGAAAATTG
1 AAAATGAAAAATG
*
14564268 GAAAT-AAAAATG
1 AAAATGAAAAATG
14564280 GAGAGGCTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
12 6 0.19
13 20 0.62
14 6 0.19
ACGTcount: A:0.65, C:0.00, G:0.18, T:0.18
Consensus pattern (13 bp):
AAAATGAAAAATG
Found at i:14565808 original size:131 final size:128
Alignment explanation
Indices: 14565517--14565840 Score: 375
Period size: 131 Copynumber: 2.5 Consensus size: 128
14565507 AGCTGGTTAA
* * * *
14565517 AAATTACAGATCTGGTCTCCCTAAGCAGTAGCGGAGTAGATCGAAGACGGTGAATCTTATCTTCC
1 AAATTACAGATCTTGTCTCCCTAAG-AGTAGCGGACTAGATCGAAGACGGCGAACCTTATCTTCC
* * *
14565582 CAGGAGTAGGGAAACAGATTTAAGCCACAAGTCCTATGTCCCTAACCGGTAGTGGAATAGGTTG
65 CAGGAGTAGGGAAACAAATTTAAGCCACAAGTCCTATGTCCCTAACCAGCAGTGGAATAGGTTG
* * * * * *
14565646 AAGATCACGGATCTTATCTTCCCTATGAGTAG-GGAAACT-GATCGAAGATGGCGGACCTTATCT
1 AA-ATTACAGATCTTGTC-TCCCTAAGAGTAGCGG--ACTAGATCGAAGACGGCGAACCTTATCT
* *
14565709 TCCCCAGGAGTAGGGAAACAAATTTAAGCCACAAGTCCTATGTCCTTGACCAGCAGTGGAATAGG
62 T-CCCAGGAGTAGGGAAACAAATTTAAGCCACAAGTCCTATGTCCCTAACCAGCAGTGGAATAGG
14565774 TTGG
126 TT-G
* * * *
14565778 AAATTGCAGATCTTGTCTCCCTAAGTAGTAGCAGAGC-AGATCGAAGACGACGAATCTTATCTT
1 AAATTACAGATCTTGTCTCCCTAAG-AGTAGCGGA-CTAGATCGAAGACGGCGAACCTTATCTT
14565841 TAGTGTAAGG
Statistics
Matches: 160, Mismatches: 25, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
129 4 0.03
130 45 0.28
131 107 0.67
132 4 0.03
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (128 bp):
AAATTACAGATCTTGTCTCCCTAAGAGTAGCGGACTAGATCGAAGACGGCGAACCTTATCTTCCC
AGGAGTAGGGAAACAAATTTAAGCCACAAGTCCTATGTCCCTAACCAGCAGTGGAATAGGTTG
Found at i:14565964 original size:129 final size:129
Alignment explanation
Indices: 14565813--14566124 Score: 480
Period size: 129 Copynumber: 2.4 Consensus size: 129
14565803 TAGTAGCAGA
* * *
14565813 GCAGATCGAAGACGACGAATCTTATCTTTAGTGTAAGGAAGCATATTTAAGCCACGAGTCCTTTC
1 GCAGATCGAAGACGGCGAATCTTATCTTAAGTGTAAGGAAGCAGATTTAAGCCACGAGTCCTTTC
*
14565878 TCCCTGAGGTTGCAATGGAGCAGACTAAGTAAGCAAGTCTTATCCTAACTGAAGTTGCAGTGGG
66 TCCCTGAGGTTGCAATGGAGCAGACTAAGTAAGCAAGTCTTATCCCAACTGAAGTTGCAGTGGG
*
14565942 GCAGATCGAAGACGGCGAATCTTATCTTCAGTGTAAGGAAGCAGATTTAAGCCACGAGTCCTTTC
1 GCAGATCGAAGACGGCGAATCTTATCTTAAGTGTAAGGAAGCAGATTTAAGCCACGAGTCCTTTC
* * ** *
14566007 TCCCTGAGGTTGCAGTGGAGCAGACTAAGTAAGCAGGTCTTATCCCGGCTGAAGTTGTAGTGGG
66 TCCCTGAGGTTGCAATGGAGCAGACTAAGTAAGCAAGTCTTATCCCAACTGAAGTTGCAGTGGG
* * * * *
14566071 ACAGATCAAAGACGGCGAATATTATCTTCAAGTGCAAGGAAGCAGATTGAAGCC
1 GCAGATCGAAGACGGCGAATCTTATCTT-AAGTGTAAGGAAGCAGATTTAAGCC
14566125 GATAATCATA
Statistics
Matches: 167, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
129 145 0.87
130 22 0.13
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (129 bp):
GCAGATCGAAGACGGCGAATCTTATCTTAAGTGTAAGGAAGCAGATTTAAGCCACGAGTCCTTTC
TCCCTGAGGTTGCAATGGAGCAGACTAAGTAAGCAAGTCTTATCCCAACTGAAGTTGCAGTGGG
Found at i:14566277 original size:44 final size:44
Alignment explanation
Indices: 14566209--14566297 Score: 124
Period size: 44 Copynumber: 2.0 Consensus size: 44
14566199 TAGATCGCAT
* * *
14566209 CAGATTGAAGCCAGAAATCTTATCTCCCTAAGATTACAGTGGAG
1 CAGATTGAAGCCAGAAATCCTATCTCCCTAAGACTACAGCGGAG
* * *
14566253 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGACTACAGCGGAG
1 CAGATTGAAGCCAGAAATCCTATCTCCCTAAGACTACAGCGGAG
14566297 C
1 C
14566298 GAATCAAGAT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (44 bp):
CAGATTGAAGCCAGAAATCCTATCTCCCTAAGACTACAGCGGAG
Found at i:14566750 original size:15 final size:15
Alignment explanation
Indices: 14566716--14566748 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
14566706 GCCCGGGCCC
*
14566716 AAAATCACAAATATT
1 AAAATCACAAATATA
14566731 AAAATCA-AAATATA
1 AAAATCACAAATATA
14566745 AAAA
1 AAAA
14566749 ATATATATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.70, C:0.09, G:0.00, T:0.21
Consensus pattern (15 bp):
AAAATCACAAATATA
Found at i:14566776 original size:18 final size:18
Alignment explanation
Indices: 14566739--14566790 Score: 61
Period size: 17 Copynumber: 2.8 Consensus size: 18
14566729 TTAAAATCAA
*
14566739 AATATAAAAAATATATAT
1 AATATAAAAAATAAATAT
14566757 AATA-AAAAAATAAATAAT
1 AATATAAAAAATAAAT-AT
*
14566775 AATATATATAAATAAA
1 AATATA-AAAAATAAA
14566791 ATGTCCAGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 10 0.34
18 10 0.34
19 1 0.03
20 8 0.28
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
AATATAAAAAATAAATAT
Found at i:14566791 original size:25 final size:24
Alignment explanation
Indices: 14566724--14566792 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 24
14566714 CCAAAATCAC
* * *
14566724 AAATAT-TAAAATCAAAATATAAA
1 AAATATATATAATAAAAAAATAAA
14566747 AAATATATATAATAAAAAAATAAA
1 AAATATATATAATAAAAAAATAAA
*
14566771 TAATA-ATATATATAAATAAAAT
1 AAATATATATA-ATAAA-AAAAT
14566793 GTCCAGTAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
23 11 0.28
24 23 0.59
25 5 0.13
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.29
Consensus pattern (24 bp):
AAATATATATAATAAAAAAATAAA
Found at i:14570124 original size:17 final size:17
Alignment explanation
Indices: 14570080--14570124 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
14570070 GAAAATAATT
*
14570080 TTTTTATTTTTTAATAA
1 TTTTTATTTTTAAATAA
* *
14570097 TTTTAAATTTTAAATAA
1 TTTTTATTTTTAAATAA
14570114 TTTTTATTTTT
1 TTTTTATTTTT
14570125 TTGAATTTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTTTATTTTTAAATAA
Found at i:14570151 original size:42 final size:42
Alignment explanation
Indices: 14570077--14570157 Score: 103
Period size: 42 Copynumber: 1.9 Consensus size: 42
14570067 ATTGAAAATA
* *
14570077 ATTTTTTTATTTTTTAATAATTTTAAATTTTAAATAATTTTT
1 ATTTTTTTATTTTTTAATAATTTAAAAGTTTAAATAATTTTT
*
14570119 ATTTTTTTGAATTTTTTAA-AA-TTAAAAGTTTAATTAATT
1 ATTTTTTT--ATTTTTTAATAATTTAAAAGTTTAAATAATT
14570158 GCTGGTGTGA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
42 23 0.68
43 2 0.06
44 9 0.26
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (42 bp):
ATTTTTTTATTTTTTAATAATTTAAAAGTTTAAATAATTTTT
Found at i:14574835 original size:18 final size:18
Alignment explanation
Indices: 14574789--14574836 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
14574779 TTTAAAAATC
*
14574789 AAATTTAAACCAGAGATT
1 AAATTTAAACTAGAGATT
14574807 AAATTTAAACTAGAGATT
1 AAATTTAAACTAGAGATT
*
14574825 AAATTCAAACTA
1 AAATTTAAACTA
14574837 TATAAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.52, C:0.10, G:0.08, T:0.29
Consensus pattern (18 bp):
AAATTTAAACTAGAGATT
Found at i:14583367 original size:18 final size:18
Alignment explanation
Indices: 14583344--14583379 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
14583334 TTGATTGTGA
14583344 TGTTCTGTTACTTTACTT
1 TGTTCTGTTACTTTACTT
14583362 TGTTCTGTTACTTTACTT
1 TGTTCTGTTACTTTACTT
14583380 GCTATTGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.17, G:0.11, T:0.61
Consensus pattern (18 bp):
TGTTCTGTTACTTTACTT
Found at i:14584125 original size:35 final size:34
Alignment explanation
Indices: 14584059--14584125 Score: 82
Period size: 35 Copynumber: 1.9 Consensus size: 34
14584049 TTATTTATTG
* *
14584059 TTGGTATTAAAGTGTATGCCATATTTTGATTTCT
1 TTGGTATTAAAGTGCATGCCATATTTGGATTTCT
*
14584093 TTGGTTATTAAAGTGCATAG-CATGTTTGGATTT
1 TTGG-TATTAAAGTGCAT-GCCATATTTGGATTT
14584126 TTCTAAAGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
34 4 0.14
35 23 0.82
36 1 0.04
ACGTcount: A:0.24, C:0.07, G:0.21, T:0.48
Consensus pattern (34 bp):
TTGGTATTAAAGTGCATGCCATATTTGGATTTCT
Found at i:14584905 original size:40 final size:40
Alignment explanation
Indices: 14584841--14584974 Score: 214
Period size: 40 Copynumber: 3.4 Consensus size: 40
14584831 TATTTTTGTA
* *
14584841 TTGGATATTGTTTGTCATTGTCTAGGTTGTATTAAAGTGT
1 TTGGTTATTGTCTGTCATTGTCTAGGTTGTATTAAAGTGT
* *
14584881 TTGGTTATTGTCTGTCATTATCTAGGTTGTATGAAAGTGT
1 TTGGTTATTGTCTGTCATTGTCTAGGTTGTATTAAAGTGT
* *
14584921 TTGGCTATTGTCTGTCATTGCCTAGGTTGTATTAAAGTGT
1 TTGGTTATTGTCTGTCATTGTCTAGGTTGTATTAAAGTGT
14584961 TTGGTTATTGTCTG
1 TTGGTTATTGTCTG
14584975 CCACTACCTT
Statistics
Matches: 85, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 85 1.00
ACGTcount: A:0.18, C:0.08, G:0.25, T:0.49
Consensus pattern (40 bp):
TTGGTTATTGTCTGTCATTGTCTAGGTTGTATTAAAGTGT
Found at i:14586661 original size:30 final size:28
Alignment explanation
Indices: 14586602--14586679 Score: 79
Period size: 28 Copynumber: 2.8 Consensus size: 28
14586592 AAAAGGGTAC
* * *
14586602 AAAA-TATATACATGTACATATATATAA
1 AAAATTATATACATATATATAGATATAA
14586629 AAAATTATATACATATATATAGATTATAA
1 AAAATTATATACATATATATAGA-TATAA
*
14586658 AAAA-GATAATTACATATATATA
1 AAAATTAT-A-TACATATATATA
14586680 TAAACAAATA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
27 4 0.09
28 17 0.40
29 10 0.23
30 12 0.28
ACGTcount: A:0.56, C:0.05, G:0.04, T:0.35
Consensus pattern (28 bp):
AAAATTATATACATATATATAGATATAA
Found at i:14586927 original size:35 final size:34
Alignment explanation
Indices: 14586810--14586937 Score: 116
Period size: 35 Copynumber: 3.7 Consensus size: 34
14586800 AAATATATAA
* * *
14586810 AAATATATATATATATATGCATATAAAAGTTA-GG
1 AAATAAATA-ATATATATGTATATAAAAGTTATGC
* * * *
14586844 AAATAAAAAATGTATATGTATATAAAATGTAAATGT
1 AAATAAATAATATATATGTATATAAAA-GT-TATGC
* *
14586880 ATATATAT-ATATATATGTATATAAAAGTTATGC
1 AAATAAATAATATATATGTATATAAAAGTTATGC
*
14586913 AAATAGAATAATATATATATATATA
1 AAATA-AATAATATATATGTATATA
14586938 TATATATATA
Statistics
Matches: 74, Mismatches: 15, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
33 23 0.31
34 13 0.18
35 32 0.43
36 6 0.08
ACGTcount: A:0.52, C:0.02, G:0.09, T:0.37
Consensus pattern (34 bp):
AAATAAATAATATATATGTATATAAAAGTTATGC
Found at i:14586930 original size:2 final size:2
Alignment explanation
Indices: 14586923--14586951 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
14586913 AAATAGAATA
14586923 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14586952 GTGCATGTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14587041 original size:3 final size:3
Alignment explanation
Indices: 14587033--14587071 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
14587023 GTATACATAG
14587033 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14587072 CAAGAAAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:14587388 original size:21 final size:23
Alignment explanation
Indices: 14587362--14587407 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
14587352 TAAAGGGTAT
*
14587362 TTAC-AAATTAAATC-TCTAAGA
1 TTACAAAATCAAATCTTCTAAGA
*
14587383 TTACAAAATCATATCTTCTAAGA
1 TTACAAAATCAAATCTTCTAAGA
14587406 TT
1 TT
14587408 GCATATCATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
23 9 0.43
ACGTcount: A:0.43, C:0.15, G:0.04, T:0.37
Consensus pattern (23 bp):
TTACAAAATCAAATCTTCTAAGA
Found at i:14587406 original size:23 final size:22
Alignment explanation
Indices: 14587362--14587420 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
14587352 TAAAGGGTAT
* *
14587362 TTACAAATTAAATC-TCTAAGA
1 TTACAAATCATATCTTCTAAGA
14587383 TTACAAAATCATATCTTCTAAGA
1 TTAC-AAATCATATCTTCTAAGA
* *
14587406 TTGCATATCATATCT
1 TTACAAATCATATCT
14587421 AAGATTGCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 4 0.12
22 18 0.56
23 10 0.31
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.37
Consensus pattern (22 bp):
TTACAAATCATATCTTCTAAGA
Found at i:14587423 original size:19 final size:20
Alignment explanation
Indices: 14587376--14587446 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 20
14587366 AAATTAAATC
* *
14587376 TCTAAGATTACAAAATCATA
1 TCTAAGATTGCAATATCATA
14587396 TCTTCTAAGATTGC-ATATCATA
1 ---TCTAAGATTGCAATATCATA
14587418 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCA-ATATCATA
*
14587439 ACTAAGAT
1 TCTAAGAT
14587447 CATATCTAAG
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
19 11 0.26
21 15 0.35
22 7 0.16
23 10 0.23
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.35
Consensus pattern (20 bp):
TCTAAGATTGCAATATCATA
Found at i:14588316 original size:44 final size:44
Alignment explanation
Indices: 14588246--14588453 Score: 231
Period size: 44 Copynumber: 4.7 Consensus size: 44
14588236 ATCTGTTATT
* * *
14588246 TTCAACCTACTCCACTGCTGC-TCAGGGAGATAGGACTCGCAATC
1 TTCAACCTATTCCACTGCT-CACCAGGGAGATAGGACTCACAATC
*
14588290 TTCAACCTATTCCACTGCTCACCAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTCACCAGGGAGATAGGACTCACAATC
* ** * * *
14588334 TTCAATCTATTCCACTAATTC-CCAGGGAGATAGAATTCTCAATC
1 TTCAACCTATTCCACT-GCTCACCAGGGAGATAGGACTCACAATC
* * *
14588378 TTCAACCTATTCCACTGCTGACCAGGGAGATATGATTCACAATC
1 TTCAACCTATTCCACTGCTCACCAGGGAGATAGGACTCACAATC
* * * *
14588422 TTTAACTTATTCCACTGCTGACCAGGTAGATA
1 TTCAACCTATTCCACTGCTCACCAGGGAGATA
14588454 AGGCTGGGGT
Statistics
Matches: 140, Mismatches: 21, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
43 2 0.01
44 136 0.97
45 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (44 bp):
TTCAACCTATTCCACTGCTCACCAGGGAGATAGGACTCACAATC
Found at i:14588680 original size:88 final size:88
Alignment explanation
Indices: 14588453--14588680 Score: 330
Period size: 88 Copynumber: 2.6 Consensus size: 88
14588443 CCAGGTAGAT
* * * *
14588453 AAGGCTGGGGTCATCGATCTGCTTCACTGTCGGTGTAGGAAGGCAAGATCTACCATTTTTAGCCT
1 AAGGCTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCCATTTTTAGCCT
*
14588518 GCTCTACTGCAACCCAGGGAGGC
66 GCTCCACTGCAACCCAGGGAGGC
* * * * *
14588541 AAGTCTGGTGTCTTCGATCTACTTCACTGTTGGTGCAGAAAGGCAAGATCTGCTATTTTTAGCCT
1 AAGGCTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCCATTTTTAGCCT
* *
14588606 GCTCCGCTGTAACCCAGGGAGGC
66 GCTCCACTGCAACCCAGGGAGGC
* *
14588629 AAGGCTGGTGTCTTCGATTTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTG
1 AAGGCTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTG
14588681 TTATCTTCGA
Statistics
Matches: 122, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
88 122 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.28
Consensus pattern (88 bp):
AAGGCTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCCATTTTTAGCCT
GCTCCACTGCAACCCAGGGAGGC
Found at i:14588732 original size:44 final size:44
Alignment explanation
Indices: 14588665--14588953 Score: 264
Period size: 44 Copynumber: 6.5 Consensus size: 44
14588655 CTGTCGGTGC
* * *
14588665 AGGAAGGCAAGATCTG-TTATCTTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGCTT-TCTTCGATCTACTTCACACCAATAT
* * * * *
14588709 ATGAAGACAATATCTGCTTTCTTCAATCTACTTCGCCACCAGTAT
1 AGGAAGACAAGATCTGCTTTCTTCGATCTACTTC-ACACCAATAT
* * * *
14588754 GGGAAGACAAGATCTAC-ATCTTCGATCCACTTC-CTACCAATAT
1 AGGAAGACAAGATCTGCTTTCTTCGATCTACTTCAC-ACCAATAT
* * * *
14588797 AGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAATAT
1 AGGAAGACAAGATCTGCTTTCTTCGATCTACTTCACACCAATAT
* * *
14588841 ATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTAT
1 AGGAAGACAAGATCTGCTTTCTTCGATCTACTTC-ACACCAATAT
* * *
14588886 -GAGAAGACAAGATCTGC-ATCTTCGATCCACTTCGCTACCAATAT
1 AG-GAAGACAAGATCTGCTTTCTTCGATCTACTTCAC-ACCAATAT
* * *
14588930 AGGAAGATAGGATCTGCTATCTTC
1 AGGAAGACAAGATCTGCTTTCTTC
14588954 ACTGATCTGC
Statistics
Matches: 199, Mismatches: 36, Indels: 19
0.78 0.14 0.07
Matches are distributed among these distances:
42 1 0.01
43 21 0.11
44 126 0.63
45 51 0.26
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (44 bp):
AGGAAGACAAGATCTGCTTTCTTCGATCTACTTCACACCAATAT
Found at i:14588825 original size:132 final size:133
Alignment explanation
Indices: 14588682--14588953 Score: 474
Period size: 132 Copynumber: 2.1 Consensus size: 133
14588672 CAAGATCTGT
*
14588682 TATCTTCGATCTACTTCACGCCAATACATGAAGACAATATCTGCTTTCTTCAATCTACTTCGCCA
1 TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCAATCTACTTCGCCA
*
14588747 CCAGTATGGGAAGACAAGATCTACATCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGACC
66 CCAGTATGAGAAGACAAGATCTACATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGACC
14588811 TGC
131 TGC
* *
14588814 TATCTTCGATCTACTTCACGCCAATATATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCA
1 TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCAATCTACTTCGCCA
* * *
14588879 CCAGTATGAGAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAGGAAGATAGGATC
66 CCAGTATGAGAAGACAAGATCTACATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGACC
14588944 TGC
131 TGC
14588947 TATCTTC
1 TATCTTC
14588954 ACTGATCTGC
Statistics
Matches: 132, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
132 100 0.76
133 32 0.24
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (133 bp):
TATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCAATCTACTTCGCCA
CCAGTATGAGAAGACAAGATCTACATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGACC
TGC
Found at i:14594658 original size:3 final size:3
Alignment explanation
Indices: 14594650--14594685 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
14594640 AATTGAATTG
*
14594650 TTA TTA TTA TTA TTC TTA -TA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
14594686 ATTTATGCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:14594673 original size:17 final size:17
Alignment explanation
Indices: 14594651--14594688 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
14594641 ATTGAATTGT
*
14594651 TATTATTATTATTCTTA
1 TATTATTATTATTATTA
14594668 TATTATTATTATTATTA
1 TATTATTATTATTATTA
14594685 TATT
1 TATT
14594689 TATGCATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (17 bp):
TATTATTATTATTATTA
Found at i:14596413 original size:17 final size:17
Alignment explanation
Indices: 14596391--14596425 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
14596381 AAAGAAGGAA
14596391 AATAAAACAAAAAAAAT
1 AATAAAACAAAAAAAAT
* *
14596408 AATAAAAGAAGAAAAAT
1 AATAAAACAAAAAAAAT
14596425 A
1 A
14596426 GGTAACAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.80, C:0.03, G:0.06, T:0.11
Consensus pattern (17 bp):
AATAAAACAAAAAAAAT
Found at i:14596691 original size:17 final size:17
Alignment explanation
Indices: 14596669--14596703 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
14596659 TAGGAAATAA
14596669 AAAATGTAAATGTATAT
1 AAAATGTAAATGTATAT
14596686 AAAATGTAAATGTATAT
1 AAAATGTAAATGTATAT
14596703 A
1 A
14596704 TATGTATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.34
Consensus pattern (17 bp):
AAAATGTAAATGTATAT
Found at i:14597221 original size:22 final size:22
Alignment explanation
Indices: 14597196--14597241 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
14597186 ATCGCATTTA
14597196 TTCTATTCTCATTTTTATTT-TT
1 TTCTATTCTC-TTTTTATTTGTT
* *
14597218 TTCTCTTTTCTTTTTATTTGTT
1 TTCTATTCTCTTTTTATTTGTT
14597240 TT
1 TT
14597242 GTGAAATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.09, C:0.13, G:0.02, T:0.76
Consensus pattern (22 bp):
TTCTATTCTCTTTTTATTTGTT
Found at i:14597810 original size:2 final size:2
Alignment explanation
Indices: 14597798--14597848 Score: 50
Period size: 2 Copynumber: 25.5 Consensus size: 2
14597788 GCATTTTCTT
* * * *
14597798 TA TA TA GTA TA TA TA TA TA TA TA TA CA TA TT TC TT TA TA TA -A
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14597840 TA TA TA TA T
1 TA TA TA TA T
14597849 TCTTAAACCT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
1 1 0.02
2 38 0.93
3 2 0.05
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:14598321 original size:13 final size:14
Alignment explanation
Indices: 14598303--14598331 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
14598293 TTTTCCAATT
14598303 TACTTGTATAT-TA
1 TACTTGTATATATA
14598316 TACTTGTATATATA
1 TACTTGTATATATA
14598330 TA
1 TA
14598332 TTTTGTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (14 bp):
TACTTGTATATATA
Found at i:14603005 original size:7 final size:7
Alignment explanation
Indices: 14602979--14603016 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
14602969 AAATGATGTG
14602979 AAAATGA
1 AAAATGA
14602986 AAAGATG-
1 AAA-ATGA
14602993 AAAATGA
1 AAAATGA
14603000 AAAATGA
1 AAAATGA
*
14603007 AAAAAGA
1 AAAATGA
14603014 AAA
1 AAA
14603017 TGGAGAGGCT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
6 3 0.11
7 22 0.79
8 3 0.11
ACGTcount: A:0.74, C:0.00, G:0.16, T:0.11
Consensus pattern (7 bp):
AAAATGA
Found at i:14603016 original size:14 final size:14
Alignment explanation
Indices: 14602977--14603009 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
14602967 AAAAATGATG
14602977 TGAAAATGAAAAGA
1 TGAAAATGAAAAGA
14602991 TGAAAATGAAAA-A
1 TGAAAATGAAAAGA
14603004 TGAAAA
1 TGAAAA
14603010 AAGAAAATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.67, C:0.00, G:0.18, T:0.15
Consensus pattern (14 bp):
TGAAAATGAAAAGA
Found at i:14604528 original size:132 final size:132
Alignment explanation
Indices: 14604302--14605298 Score: 761
Period size: 132 Copynumber: 7.5 Consensus size: 132
14604292 TCCCTCAGTT
*
14604302 GTAGTGGAGCAGATCAAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
1 GTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
* *
14604367 TAGTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAG
66 CAGTAATTCTACTTCCCTAGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAG
14604432 CA
131 CA
* * *
14604434 ATAGTGGAGCAGATTAAAGATGGCATATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
1 GTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
* *
14604499 CAGTAATTCTACTTCTCTAGGCAGCAGCGGAATAGATTGAAGAGTTCAGATCTTGTCTCCCTAAG
66 CAGTAATTCTACTTCCCTAGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAG
14604564 CA
131 CA
* *
14604566 GTAGTAGAGCAGATCAAATATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
1 GTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
* * * * *
14604631 CAGTAATTCTACTTTCCTGGGCAGCAGTGGAATAGATTAAAGATATCAGATCTTGTCTTCCC-AT
66 CAGTAATTCTACTTCCCTAGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTC-TCCCTA-
*
14604695 A-CTG
129 AGC-A
* * * * *** * * ** * * * ** * * ** *
14604699 GTGGTGAAGTAGATCGAAGAAAACATATCTTGTCTTCATGT-ATCGGC-GTGAAGTAGATCAAAT
1 GTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGT-TACAGTGGAGTACATTGAAG
* * * * * * * *** *
14604762 ACAATAGATAT-TGTCTCCCCATACTGG-TG--GTGGATTAGATTGAAGAAAGCAGATATTGTCT
65 CCAGTA-AT-TCT-ACTTCCC-TA--GGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTC-
*
14604823 TCCC-ATA-CTG
123 TCCCTA-AGC-A
* * * * * ** * ** * * * * * * **
14604833 GTGGCGAAGTAGATCCAAGAAAGCAGATCTTGTCTTCATGT-ATTGGC-GTGAAGTAGATCAAAG
1 GTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTT-ACAGTGGAGTACATTGAAG
** * * * * *** * *** *
14604896 ATAGCAGA-TCT--TGT-CTTCATGTATTGGCGTGAAGTAGATCGAAGAAAACAAATCTTGTCT-
65 CCAGTA-ATTCTACT-TCCCT-AGGCAGCAGCG-GAA-TAGATTGAAGATTTCAGATCTTGTCTC
* * *
14604956 TC-ATGTA
125 CCTAAGCA
** * * *
14604963 TTGGCGTGAAGTAAATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAA
1 --GTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAA
* * *
14605028 GCCAGTAATTCTACTTCCCTGGGCAGCAGCGGAATAGATTGAATATTTTAGATCTTGTCTCCCTA
64 GCCAGTAATTCTACTTCCCTAGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTA
14605093 AGCA
129 AGCA
*
14605097 GAAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
1 GTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
* * * * * *
14605162 TAGAAATTCTACTTCCCTAGGCAGCAGTGGAATAGATTGAGGATTTTAGATCTTATCTCCCTAAG
66 CAGTAATTCTACTTCCCTAGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAG
14605227 CA
131 CA
* * *
14605229 GTAGTGGAGCAGATCAAAGATGGCAGAATTTACCTCCCTGAGGTTATAGTGGAGTACATTGAAGC
1 GTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
14605294 CAGTA
66 CAGTA
14605299 TTCCTATTTT
Statistics
Matches: 699, Mismatches: 136, Indels: 60
0.78 0.15 0.07
Matches are distributed among these distances:
128 1 0.00
129 1 0.00
130 3 0.00
131 4 0.01
132 490 0.70
133 81 0.12
134 112 0.16
135 4 0.01
136 1 0.00
137 2 0.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (132 bp):
GTAGTGGAGCAGATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGC
CAGTAATTCTACTTCCCTAGGCAGCAGCGGAATAGATTGAAGATTTCAGATCTTGTCTCCCTAAG
CA
Found at i:14604757 original size:44 final size:44
Alignment explanation
Indices: 14604702--14604984 Score: 228
Period size: 44 Copynumber: 6.4 Consensus size: 44
14604692 CATACTGGTG
* *
14604702 GTGAAGTAGATCGAAGAAAACATATCTTGTCTTCATGTATCGGC
1 GTGAAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTATCGGC
* * * * * *** *
14604746 GTGAAGTAGATCAAATACAATAGATATTGTCTCCCCATA-CTGGTG
1 GTGAAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTATC-GG-C
* * ** * * *** *
14604791 GTGGATTAGATTGAAGAAAGCAGATATTGTCTTCCCATA-CTGGTG
1 GTGAAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTATC-GG-C
* * * *
14604836 GCGAAGTAGATCCAAGAAAGCAGATCTTGTCTTCATGTATTGGC
1 GTGAAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTATCGGC
* * *
14604880 GTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGC
1 GTGAAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTATCGGC
* * *
14604924 GTGAAGTAGATCGAAGAAAACAAATCTTGTCTTCATGTATTGGC
1 GTGAAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTATCGGC
*
14604968 GTGAAGTAAATCAAAGA
1 GTGAAGTAGATCAAAGA
14604985 TGGCAGATTT
Statistics
Matches: 196, Mismatches: 40, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
43 1 0.01
44 127 0.65
45 68 0.35
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.29
Consensus pattern (44 bp):
GTGAAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTATCGGC
Found at i:14604910 original size:134 final size:134
Alignment explanation
Indices: 14604657--14604911 Score: 375
Period size: 134 Copynumber: 1.9 Consensus size: 134
14604647 CTGGGCAGCA
* * * * *
14604657 GTGGAATAGATTAAAGATATCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAA
1 GTGGAATAGATTAAAGAAAGCAGATATTGTCTTCCCATACTGGTGGCGAAGTAGATCCAAGAAAA
* * *
14604722 CATATCTTGTCTTCATGTATCGGCGTGAAGTAGATCAAATACAATAGATATTGTCTCCCCATACT
66 CAGATCTTGTCTTCATGTATCGGCGTGAAGTAGATCAAAGACAACAGATATTGTCTCCCCATACT
14604787 GGTG
131 GGTG
* * *
14604791 GTGGATTAGATTGAAGAAAGCAGATATTGTCTTCCCATACTGGTGGCGAAGTAGATCCAAGAAAG
1 GTGGAATAGATTAAAGAAAGCAGATATTGTCTTCCCATACTGGTGGCGAAGTAGATCCAAGAAAA
* * * *
14604856 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGTCT
66 CAGATCTTGTCTTCATGTATCGGCGTGAAGTAGATCAAAGACAACAGATATTGTCT
14604912 TCATGTATTG
Statistics
Matches: 106, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
134 106 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.30
Consensus pattern (134 bp):
GTGGAATAGATTAAAGAAAGCAGATATTGTCTTCCCATACTGGTGGCGAAGTAGATCCAAGAAAA
CAGATCTTGTCTTCATGTATCGGCGTGAAGTAGATCAAAGACAACAGATATTGTCTCCCCATACT
GGTG
Found at i:14605345 original size:132 final size:132
Alignment explanation
Indices: 14604977--14605352 Score: 396
Period size: 132 Copynumber: 2.8 Consensus size: 132
14604967 CGTGAAGTAA
* * *
14604977 ATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTAC
1 ATCAAAGATGGCAGAATTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGAAATTCTAC
** *** * **** *
14605042 TTCCCTGGGCAGCAGCGGAATAGATTGAATATTTTAGATCTTGTCTCCCTAAGCAGAAGTGGAGC
66 TTCCCTAAGCAGCAATAGAATAGATTGAAAACCACAGATCTTATCTCCCTAAGCAGAAGTGGAGC
14605107 AG
131 AG
* * *
14605109 ATCAAAGATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCTAGAAATTCTAC
1 ATCAAAGATGGCAGAATTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGAAATTCTAC
* * * ** **** *
14605174 TTCCCTAGGCAGCAGTGGAATAGATTGAGGATTTTAGATCTTATCTCCCTAAGCAGTAGTGGAGC
66 TTCCCTAAGCAGCAATAGAATAGATTGAAAACCACAGATCTTATCTCCCTAAGCAGAAGTGGAGC
14605239 AG
131 AG
* *
14605241 ATCAAAGATGGCAGAATTTACCTCCCTGAGGTTATAGTGGAGTACATTGAAGCCAG-TATTCCTA
1 ATCAAAGATGGCAGAATTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGAAATT-CTA
* * * ** * *
14605305 TTTTCTTGAAGTTGCAATAGAGTGGATT-AAAACCACAGATCTTATCTC
65 CTTCCCT-AAGCAGCAATAGAATAGATTGAAAACCACAGATCTTATCTC
14605353 TCTGAAGTTG
Statistics
Matches: 213, Mismatches: 29, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
131 3 0.01
132 197 0.92
133 13 0.06
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (132 bp):
ATCAAAGATGGCAGAATTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGAAATTCTAC
TTCCCTAAGCAGCAATAGAATAGATTGAAAACCACAGATCTTATCTCCCTAAGCAGAAGTGGAGC
AG
Found at i:14606189 original size:22 final size:22
Alignment explanation
Indices: 14606164--14606209 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
14606154 ATCGCATTTA
14606164 TTCTATTCTCATTTTTATTT-TT
1 TTCTATTCTC-TTTTTATTTGTT
* *
14606186 TTCTCTTTTCTTTTTATTTGTT
1 TTCTATTCTCTTTTTATTTGTT
14606208 TT
1 TT
14606210 GTGAAATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.09, C:0.13, G:0.02, T:0.76
Consensus pattern (22 bp):
TTCTATTCTCTTTTTATTTGTT
Found at i:14606782 original size:2 final size:2
Alignment explanation
Indices: 14606770--14606820 Score: 50
Period size: 2 Copynumber: 25.5 Consensus size: 2
14606760 GCATTTTCTT
* * * *
14606770 TA TA TA GTA TA TA TA TA TA TA TA TA CA TA TT TC TT TA TA TA -A
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14606812 TA TA TA TA T
1 TA TA TA TA T
14606821 TCTTTTTCGA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
1 1 0.02
2 38 0.93
3 2 0.05
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:14607313 original size:13 final size:14
Alignment explanation
Indices: 14607295--14607323 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
14607285 TTTTCCAATT
14607295 TACTTGTATAT-TA
1 TACTTGTATATATA
14607308 TACTTGTATATATA
1 TACTTGTATATATA
14607322 TA
1 TA
14607324 TTTTGTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (14 bp):
TACTTGTATATATA
Found at i:14608178 original size:3 final size:3
Alignment explanation
Indices: 14608170--14608211 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
14608160 GTATATATAG
* *
14608170 TAA TAA TAA TAA TAA TAA TAA TGA TAA TGA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
14608212 CTTAATAACA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:14608554 original size:23 final size:24
Alignment explanation
Indices: 14608524--14608570 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
14608514 AAATTAAATC
14608524 TCTAAGATTACA-AAATCATATCT
1 TCTAAGATTACATAAATCATATCT
* *
14608547 TCTAAGATTGCATATATCATATCT
1 TCTAAGATTACATAAATCATATCT
14608571 AAGATCATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.38, C:0.17, G:0.06, T:0.38
Consensus pattern (24 bp):
TCTAAGATTACATAAATCATATCT
Found at i:14608595 original size:14 final size:12
Alignment explanation
Indices: 14608562--14608587 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14608552 GATTGCATAT
14608562 ATCATATCTAAG
1 ATCATATCTAAG
14608574 ATCATATCTAAG
1 ATCATATCTAAG
14608586 AT
1 AT
14608588 TGCATATCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (12 bp):
ATCATATCTAAG
Found at i:14618326 original size:21 final size:22
Alignment explanation
Indices: 14618282--14618328 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
14618272 ATATAATTTT
*
14618282 TAAGATTTTATATTTTAGTTGGG
1 TAAGATTTTATAATTTA-TTGGG
*
14618305 TAAGATTTTTTAATTT-TTGGG
1 TAAGATTTTATAATTTATTGGG
14618326 TAA
1 TAA
14618329 TGGGTTTAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 8 0.36
23 14 0.64
ACGTcount: A:0.28, C:0.00, G:0.19, T:0.53
Consensus pattern (22 bp):
TAAGATTTTATAATTTATTGGG
Found at i:14621732 original size:17 final size:17
Alignment explanation
Indices: 14621712--14622473 Score: 486
Period size: 17 Copynumber: 43.1 Consensus size: 17
14621702 AATTTTTTTT
*
14621712 AACACGAATATTTTTGA
1 AACACGAAAATTTTTGA
* *
14621729 AACA--ATTATTTTTTCGA
1 AACACGA-AAATTTTT-GA
*
14621746 AAACACGAAAAATTTTTAA
1 -AACACG-AAAATTTTTGA
* *
14621765 AACACGAGAATTTTAGA
1 AACACGAAAATTTTTGA
* **
14621782 GACACGAAAATTCTTAAAA
1 AACACGAAAATT-TT-TGA
*
14621801 AACACGAAAATTTTTAA
1 AACACGAAAATTTTTGA
*
14621818 AACACGAGAATTTTTTGAA
1 AACACGA-AAATTTTTG-A
*
14621837 AACATGAAAATTTTTGAA
1 AACACGAAAATTTTTG-A
*
14621855 AACATCG-GAATTTTTGAA
1 AACA-CGAAAATTTTTG-A
*
14621873 AACACGAAGATTTTTGA
1 AACACGAAAATTTTTGA
*** *
14621890 AACACATGCATTTTTTTTTAA
1 AACAC--G-A-AAATTTTTGA
*
14621911 AACACGAAGATTTTTGA
1 AACACGAAAATTTTTGA
* *
14621928 AACA--ATTATTTTTTAAGA
1 AACACGA-AAATTTTT--GA
*
14621946 AA-ACGAAAATTTATGA
1 AACACGAAAATTTTTGA
**
14621962 AACACGAGACTTTTTTGAA
1 AACACGA-AAATTTTTG-A
**
14621981 AACACGAAAATTTTCAA
1 AACACGAAAATTTTTGA
*
14621998 AACACCAAAATTTTTGAA
1 AACACGAAAATTTTTG-A
**
14622016 AACACGAGGATTTTTGA
1 AACACGAAAATTTTTGA
*
14622033 AATACGAAAATTTTTGAA
1 AACACGAAAATTTTTG-A
14622051 AACACGAAAATTTTTGAA
1 AACACGAAAATTTTTG-A
* *
14622069 AACACGGAAATTTTTAA
1 AACACGAAAATTTTTGA
* *
14622086 AACACAGGAATTTTTTGA
1 AACAC-GAAAATTTTTGA
*
14622104 AACACTG-GAATTTTTGAA
1 AACAC-GAAAATTTTTG-A
*
14622122 AACACGAAGATTTTTGA
1 AACACGAAAATTTTTGA
*
14622139 AACGCGCAAAA-TTTTGA
1 AACACG-AAAATTTTTGA
*
14622156 AATACGAAAATTTTTGA
1 AACACGAAAATTTTTGA
* *
14622173 AATACGAAAATTTTAGA
1 AACACGAAAATTTTTGA
* *
14622190 AACACAAAAATTTTTAA
1 AACACGAAAATTTTTGA
*
14622207 AACACGACAATTTTTGA
1 AACACGAAAATTTTTGA
*
14622224 AACACGAGAAATTTTTTTTA
1 AACACGA-AAA--TTTTTGA
* ** *
14622244 AA-ACATAAAAAATTTAA
1 AACAC-GAAAATTTTTGA
* *
14622261 AACAAGAAAATTTGTGA
1 AACACGAAAATTTTTGA
* *
14622278 AACACGAGAATTGTTGAA
1 AACACGAAAATTTTTG-A
* *
14622296 AATACAAAAATTTTTGAA
1 AACACGAAAATTTTTG-A
*
14622314 AACTCGAAAATTTTTGA
1 AACACGAAAATTTTTGA
* *
14622331 AACACAAAAATTTTAGA
1 AACACGAAAATTTTTGA
* *
14622348 AACATGGAAATTTTTAGAA
1 AACACGAAAATTTTT-G-A
*
14622367 AACACGGAAAA-TTTTGG
1 AACAC-GAAAATTTTTGA
* *
14622384 ATCACCG-GAATTTTTGAA
1 AACA-CGAAAATTTTTG-A
14622402 AACACGAAAATTTTTGA
1 AACACGAAAATTTTTGA
*
14622419 AACACCG-AGATTTTTGAA
1 AACA-CGAAAATTTTTG-A
**
14622437 AACACGAGGATTTTTGAA
1 AACACGAAAATTTTTG-A
14622455 AACACGAAAATTTTTGA
1 AACACGAAAATTTTTGA
14622472 AA
1 AA
14622474 ACGCGGAAAG
Statistics
Matches: 582, Mismatches: 116, Indels: 94
0.73 0.15 0.12
Matches are distributed among these distances:
15 2 0.00
16 20 0.03
17 250 0.43
18 231 0.40
19 47 0.08
20 20 0.03
21 12 0.02
ACGTcount: A:0.46, C:0.11, G:0.12, T:0.30
Consensus pattern (17 bp):
AACACGAAAATTTTTGA
Found at i:14621766 original size:18 final size:17
Alignment explanation
Indices: 14621745--14622475 Score: 433
Period size: 18 Copynumber: 41.3 Consensus size: 17
14621735 TATTTTTTCG
14621745 AAAACACGAAAAATTTTT
1 AAAACACG-AAAATTTTT
*
14621763 AAAACACGAGAA-TTTT
1 AAAACACGAAAATTTTT
* *
14621779 AGAGACACGAAAATTCTTAA
1 A-AAACACGAAAATT-TT-T
14621799 AAAACACGAAAATTTTT
1 AAAACACGAAAATTTTT
*
14621816 AAAACACGAGAATTTTTT
1 AAAACACGA-AAATTTTT
*
14621834 GAAAACATGAAAATTTTT
1 -AAAACACGAAAATTTTT
*
14621852 GAAAACATCG-GAATTTTT
1 -AAAACA-CGAAAATTTTT
*
14621870 GAAAACACGAAGATTTTT
1 -AAAACACGAAAATTTTT
* ***
14621888 GAAACACATGCATTTTTTTTT
1 -AAA-ACACG-A-AAATTTTT
*
14621909 AAAACACGAAGATTTTT
1 AAAACACGAAAATTTTT
* * *
14621926 GAAACA--ATTATTTTTT
1 AAAACACGA-AAATTTTT
* *
14621942 AAGAAAACGAAAATTTAT
1 AA-AACACGAAAATTTTT
* **
14621960 GAAACACGAGACTTTTTT
1 AAAACACGA-AAATTTTT
*
14621978 GAAAACACGAAAATTTTC
1 -AAAACACGAAAATTTTT
*
14621996 AAAACACCAAAATTTTT
1 AAAACACGAAAATTTTT
**
14622013 GAAAACACGAGGATTTTT
1 -AAAACACGAAAATTTTT
* *
14622031 GAAATACGAAAATTTTT
1 AAAACACGAAAATTTTT
14622048 GAAAACACGAAAATTTTT
1 -AAAACACGAAAATTTTT
*
14622066 GAAAACACGGAAATTTTT
1 -AAAACACGAAAATTTTT
* *
14622084 AAAACACAGGAATTTTTT
1 AAAACAC-GAAAATTTTT
* *
14622102 GAAACACTG-GAATTTTT
1 AAAACAC-GAAAATTTTT
*
14622119 GAAAACACGAAGATTTTT
1 -AAAACACGAAAATTTTT
* *
14622137 GAAACGCGCAAAA-TTTT
1 AAAACACG-AAAATTTTT
* *
14622154 GAAATACGAAAATTTTT
1 AAAACACGAAAATTTTT
* *
14622171 GAAATACGAAAA-TTTT
1 AAAACACGAAAATTTTT
*
14622187 AGAAACACAAAAATTTTT
1 A-AAACACGAAAATTTTT
*
14622205 AAAACACGACAATTTTT
1 AAAACACGAAAATTTTT
*
14622222 GAAACACGAGAAATTTTTTTT
1 AAAACACGA-AAA---TTTTT
* **
14622243 AAAACA-TAAAAAATTT
1 AAAACACGAAAATTTTT
* *
14622259 AAAACAAGAAAATTTGT
1 AAAACACGAAAATTTTT
* * *
14622276 GAAACACGAGAATTGTTG
1 AAAACACGAAAATT-TTT
* *
14622294 AAAATACAAAAATTTTT
1 AAAACACGAAAATTTTT
*
14622311 GAAAACTCGAAAATTTTT
1 -AAAACACGAAAATTTTT
* *
14622329 GAAACAC-AAAAATTTT
1 AAAACACGAAAATTTTT
* *
14622345 AGAAACATGGAAATTTTT
1 A-AAACACGAAAATTTTT
14622363 AGAAAACACGGAAAA-TTTT
1 --AAAACAC-GAAAATTTTT
** * *
14622382 GGATCACCG-GAATTTTT
1 AAAACA-CGAAAATTTTT
14622399 GAAAACACGAAAATTTTT
1 -AAAACACGAAAATTTTT
* *
14622417 GAAACACCG-AGATTTTT
1 AAAACA-CGAAAATTTTT
**
14622434 GAAAACACGAGGATTTTT
1 -AAAACACGAAAATTTTT
14622452 GAAAACACGAAAATTTTT
1 -AAAACACGAAAATTTTT
14622470 GAAAAC
1 -AAAAC
14622476 GCGGAAAGAT
Statistics
Matches: 553, Mismatches: 115, Indels: 90
0.73 0.15 0.12
Matches are distributed among these distances:
15 1 0.00
16 38 0.07
17 200 0.36
18 236 0.43
19 52 0.09
20 11 0.02
21 15 0.03
ACGTcount: A:0.46, C:0.11, G:0.13, T:0.30
Consensus pattern (17 bp):
AAAACACGAAAATTTTT
Found at i:14622154 original size:35 final size:34
Alignment explanation
Indices: 14621746--14622475 Score: 495
Period size: 35 Copynumber: 20.6 Consensus size: 34
14621736 ATTTTTTCGA
* * *
14621746 AAACACGAAAAATTTTTAAAACACGAGAATTTTAG
1 AAACACG-AAAATTTTGAAAACACGAAAATTTTTG
* * *
14621781 AGACACGAAAATTCTTAAAAAACACGAAAATTTTTA
1 AAACACGAAAATT-TT-GAAAACACGAAAATTTTTG
* *
14621817 AAACACGAGAATTTTTTGAAAACATGAAAATTTTTG
1 AAACACGA-AA-ATTTTGAAAACACGAAAATTTTTG
* * *
14621853 AAAACATCGGAATTTTTGAAAACACGAAGATTTTTG
1 -AAACA-CGAAAATTTTGAAAACACGAAAATTTTTG
*** * *
14621889 AAACACATGCATTTTTTTTTAAAACACGAAGATTTTTG
1 AAACAC--G-A-AAATTTTGAAAACACGAAAATTTTTG
* * * * *
14621927 AAACA--ATTATTTTTTAAGAAAACGAAAATTTATG
1 AAACACGA-AAATTTTGAA-AACACGAAAATTTTTG
** **
14621961 AAACACGAGACTTTTTTGAAAACACGAAAATTTTCA
1 AAACACGA-A-AATTTTGAAAACACGAAAATTTTTG
* **
14621997 AAACACCAAAATTTTTGAAAACACGAGGATTTTTG
1 AAACACGAAAA-TTTTGAAAACACGAAAATTTTTG
*
14622032 AAATACGAAAATTTTTGAAAACACGAAAATTTTTG
1 AAACACGAAAA-TTTTGAAAACACGAAAATTTTTG
* * * *
14622067 AAAACACGGAAATTTTTAAAACACAGGAATTTTTTG
1 -AAACACGAAAATTTTGAAAACAC-GAAAATTTTTG
* * *
14622103 AAACACTGGAATTTTTGAAAACACGAAGATTTTTG
1 AAACAC-GAAAATTTTGAAAACACGAAAATTTTTG
* *
14622138 AAACGCGCAAAATTTTG-AAATACGAAAATTTTTG
1 AAACACG-AAAATTTTGAAAACACGAAAATTTTTG
* * *
14622172 AAATACGAAAATTTT-AGAAACACAAAAATTTTTA
1 AAACACGAAAATTTTGA-AAACACGAAAATTTTTG
* *
14622206 AAACACGACAATTTTTG-AAACACGAGAAATTTTTTTTA
1 AAACACGA-AAATTTTGAAAACACGA-AAA---TTTTTG
** * * *
14622244 AAACATAAAAAATTT-AAAACAAGAAAATTTGTG
1 AAACACGAAAATTTTGAAAACACGAAAATTTTTG
* * *
14622277 AAACACGAGAATTGTTGAAAATACAAAAATTTTTG
1 AAACACGAAAATT-TTGAAAACACGAAAATTTTTG
* * *
14622312 AAAACTCGAAAATTTTTG-AAACACAAAAATTTTAG
1 -AAACACGAAAA-TTTTGAAAACACGAAAATTTTTG
* *
14622347 AAACATGGAAATTTTTAGAAAACACGGAAAA-TTTTG
1 AAACA-CGAAAATTTT-GAAAACAC-GAAAATTTTTG
* * * *
14622383 GATCACCGGAATTTTTGAAAACACGAAAATTTTTG
1 AAACA-CGAAAATTTTGAAAACACGAAAATTTTTG
* * **
14622418 AAACACCGAGATTTTTGAAAACACGAGGATTTTTG
1 AAACA-CGAAAATTTTGAAAACACGAAAATTTTTG
14622453 AAAACACGAAAATTTTTGAAAAC
1 -AAACACGAAAA-TTTTGAAAAC
14622476 GCGGAAAGAT
Statistics
Matches: 556, Mismatches: 100, Indels: 77
0.76 0.14 0.11
Matches are distributed among these distances:
33 32 0.06
34 89 0.16
35 190 0.34
36 165 0.30
37 36 0.06
38 44 0.08
ACGTcount: A:0.46, C:0.11, G:0.13, T:0.30
Consensus pattern (34 bp):
AAACACGAAAATTTTGAAAACACGAAAATTTTTG
Found at i:14622272 original size:15 final size:16
Alignment explanation
Indices: 14622240--14622273 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
14622230 AGAAATTTTT
14622240 TTTAAAACATAAAAAA
1 TTTAAAACATAAAAAA
*
14622256 TTTAAAACA-AGAAAA
1 TTTAAAACATAAAAAA
14622271 TTT
1 TTT
14622274 GTGAAACACG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.62, C:0.06, G:0.03, T:0.29
Consensus pattern (16 bp):
TTTAAAACATAAAAAA
Found at i:14622469 original size:53 final size:54
Alignment explanation
Indices: 14621738--14622473 Score: 512
Period size: 53 Copynumber: 13.8 Consensus size: 54
14621728 AAACAATTAT
* * * *
14621738 TTTTTCGAAAACACGAAAAATTTTT-AAAACACGAGAATTTTAGAGACA-CGAAAA
1 TTTTT-GAAAACACG-AGAATTTTTGAAAACACGAAAATTTTTGAAACACCGAAAA
** * * *
14621792 TTCTTAAAAAACACGAAAATTTTT-AAAACACGAGAATTTTTTGAAA-ACATGAAAA
1 TT-TTTGAAAACACGAGAATTTTTGAAAACACGA-AAATTTTTGAAACAC-CGAAAA
* * ***
14621847 TTTTTGAAAACATCG-GAATTTTTGAAAACACGAAGATTTTTGAAACACATGCATTT
1 TTTTTGAAAACA-CGAGAATTTTTGAAAACACGAAAATTTTTGAAACAC-CG-AAAA
* ** * * *
14621903 TTTTTTAAAACACGA-AGATTTTTG-AAACA--ATTATTTTTTAAGAAAACGAAAA
1 TTTTTGAAAACACGAGA-ATTTTTGAAAACACGAAAATTTTTGAA-ACACCGAAAA
* * **
14621955 TTTATG-AAACACGAGACTTTTTTGAAAACACGAAAATTTTCAAAACACC-AAAA
1 TTTTTGAAAACACGAGA-ATTTTTGAAAACACGAAAATTTTTGAAACACCGAAAA
* *
14622008 TTTTTGAAAACACGAGGATTTTTG-AAATACGAAAATTTTTGAAA-ACACGAAAA
1 TTTTTGAAAACACGAGAATTTTTGAAAACACGAAAATTTTTGAAACAC-CGAAAA
* * * *
14622061 TTTTTGAAAACACG-GAAATTTTT-AAAACACAGGAATTTTTTGAAACACTG-GAA
1 TTTTTGAAAACACGAG-AATTTTTGAAAACAC-GAAAATTTTTGAAACACCGAAAA
* *
14622114 TTTTTGAAAACACGA-AGATTTTTG-AAACGCGCAAAA-TTTTGAAATA-CGAAAA
1 TTTTTGAAAACACGAGA-ATTTTTGAAAACACG-AAAATTTTTGAAACACCGAAAA
* * * * * *
14622166 TTTTTG-AAATACGAAAATTTTAG-AAACACAAAAATTTTTAAAACA-CGACAA
1 TTTTTGAAAACACGAGAATTTTTGAAAACACGAAAATTTTTGAAACACCGAAAA
* * ** * *
14622217 TTTTTG-AAACACGAGAAATTTTTTTTAAAACA-TAAAAAATTTAAAACA-AGAAAA
1 TTTTTGAAAACACGAG-AA--TTTTTGAAAACACGAAAATTTTTGAAACACCGAAAA
* * * *
14622271 TTTGTG-AAACACGAGAATTGTTGAAAATACAAAAATTTTTGAAA-ACTCGAAAA
1 TTTTTGAAAACACGAGAATTTTTGAAAACACGAAAATTTTTGAAACAC-CGAAAA
* * * * * *
14622324 TTTTTG-AAACACAAAAATTTTAG-AAACATGGAAATTTTTAGAAAACACGGAAAA
1 TTTTTGAAAACACGAGAATTTTTGAAAACACGAAAATTTTT-G-AAACACCGAAAA
* ** *
14622378 TTTTGGATCAC-CG-GAATTTTTGAAAACACGAAAATTTTTGAAACACCG-AGA
1 TTTTTGAAAACACGAGAATTTTTGAAAACACGAAAATTTTTGAAACACCGAAAA
*
14622429 TTTTTGAAAACACGAGGATTTTTGAAAACACGAAAATTTTTGAAA
1 TTTTTGAAAACACGAGAATTTTTGAAAACACGAAAATTTTTGAAA
14622474 ACGCGGAAAG
Statistics
Matches: 537, Mismatches: 102, Indels: 87
0.74 0.14 0.12
Matches are distributed among these distances:
50 4 0.01
51 75 0.14
52 84 0.16
53 170 0.32
54 133 0.25
55 52 0.10
56 19 0.04
ACGTcount: A:0.46, C:0.11, G:0.13, T:0.30
Consensus pattern (54 bp):
TTTTTGAAAACACGAGAATTTTTGAAAACACGAAAATTTTTGAAACACCGAAAA
Found at i:14622653 original size:22 final size:22
Alignment explanation
Indices: 14622627--14622674 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
14622617 AAACATGACT
*
14622627 ATTTTTTTTTAA-AAACGAAAA
1 ATTTTTTTTGAAGAAACGAAAA
*
14622648 ATTTTTTTTGAAGACACGAAAA
1 ATTTTTTTTGAAGAAACGAAAA
14622670 ATTTT
1 ATTTT
14622675 GAAAAATAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 11 0.46
22 13 0.54
ACGTcount: A:0.42, C:0.06, G:0.08, T:0.44
Consensus pattern (22 bp):
ATTTTTTTTGAAGAAACGAAAA
Found at i:14622692 original size:18 final size:20
Alignment explanation
Indices: 14622671--14622715 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
14622661 ACACGAAAAA
14622671 TTTTGAAAA-AT-AGAATTT
1 TTTTGAAAACATGAGAATTT
*
14622689 TTTTGAAAACATGAGATTTT
1 TTTTGAAAACATGAGAATTT
14622709 TTTTGAA
1 TTTTGAA
14622716 TATTTTCGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 9 0.38
19 2 0.08
20 13 0.54
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.47
Consensus pattern (20 bp):
TTTTGAAAACATGAGAATTT
Found at i:14623044 original size:10 final size:10
Alignment explanation
Indices: 14623029--14623099 Score: 61
Period size: 10 Copynumber: 6.9 Consensus size: 10
14623019 ATTAAAACCT
14623029 TTTTTTTTTC
1 TTTTTTTTTC
14623039 TTTTTTTTTCC
1 TTTTTTTTT-C
* *
14623050 TTCTTCTTTC
1 TTTTTTTTTC
**
14623060 TTCCCTTTTTC
1 TT-TTTTTTTC
*
14623071 TTCTTTTTTC
1 TTTTTTTTTC
* *
14623081 TCTCTTTTTC
1 TTTTTTTTTC
14623091 TTTTTTTTT
1 TTTTTTTTT
14623100 TCTGGACTGG
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
10 33 0.67
11 16 0.33
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:14623069 original size:32 final size:31
Alignment explanation
Indices: 14623033--14623092 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 31
14623023 AAACCTTTTT
*
14623033 TTTTTCTTTTTTTTTC-CTTCTTCTTTCTTCCC
1 TTTTTCTTCTTTTTTCTC-TCTT-TTTCTTCCC
14623065 TTTTTCTTCTTTTTTCTCTCTTTTTCTT
1 TTTTTCTTCTTTTTTCTCTCTTTTTCTT
14623093 TTTTTTTTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 6 0.23
32 19 0.73
33 1 0.04
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (31 bp):
TTTTTCTTCTTTTTTCTCTCTTTTTCTTCCC
Found at i:14623073 original size:18 final size:20
Alignment explanation
Indices: 14623050--14623092 Score: 63
Period size: 18 Copynumber: 2.2 Consensus size: 20
14623040 TTTTTTTTCC
14623050 TTCTTCTTTCTTC-C-CTTT
1 TTCTTCTTTCTTCTCTCTTT
*
14623068 TTCTTCTTTTTTCTCTCTTT
1 TTCTTCTTTCTTCTCTCTTT
14623088 TTCTT
1 TTCTT
14623093 TTTTTTTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 12 0.55
19 1 0.05
20 9 0.41
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (20 bp):
TTCTTCTTTCTTCTCTCTTT
Found at i:14623089 original size:21 final size:19
Alignment explanation
Indices: 14623032--14623102 Score: 65
Period size: 21 Copynumber: 3.6 Consensus size: 19
14623022 AAAACCTTTT
*
14623032 TTTTTTCTTTTTTTTTCCTTC
1 TTTTTTC-TTCTTTTT-CTTC
*
14623053 TTCTTTCTTCCCTTTTTCTTC
1 TTTTTTCTT--CTTTTTCTTC
14623074 TTTTTTCTCTCTTTTTCTT-
1 TTTTTTCT-TCTTTTTCTTC
14623093 TTTTTT-TTCT
1 TTTTTTCTTCT
14623103 GGACTGGGCT
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
17 3 0.07
18 1 0.02
19 6 0.14
20 11 0.25
21 17 0.39
22 6 0.14
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTTTTCTTCTTTTTCTTC
Found at i:14623102 original size:11 final size:11
Alignment explanation
Indices: 14623027--14623100 Score: 51
Period size: 11 Copynumber: 6.5 Consensus size: 11
14623017 AAATTAAAAC
14623027 CTTTTTTTTTT
1 CTTTTTTTTTT
*
14623038 CTTTTTTTTTC
1 CTTTTTTTTTT
*
14623049 CTTCTTCTTTCTT
1 CTT-TT-TTTTTT
** *
14623062 CCCTTTTTCTT
1 CTTTTTTTTTT
* *
14623073 CTTTTTTCTCT
1 CTTTTTTTTTT
14623084 CTTTTTCTTTTT
1 CTTTTT-TTTTT
14623096 -TTTTT
1 CTTTTT
14623101 CTGGACTGGG
Statistics
Matches: 48, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
11 36 0.75
12 7 0.15
13 5 0.10
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (11 bp):
CTTTTTTTTTT
Found at i:14623236 original size:24 final size:24
Alignment explanation
Indices: 14623209--14623268 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
14623199 TGTTTTGATT
14623209 TTTTTTTTTTTGTATTGCTT-TTTC
1 TTTTTTTTTTTGT-TTGCTTATTTC
*
14623233 TTTTTTTTTCT-TTTGCTTAATTTC
1 TTTTTTTTTTTGTTTGCTT-ATTTC
14623257 TTTTTTTTTTTG
1 TTTTTTTTTTTG
14623269 GGCTTTTGGG
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
22 6 0.19
23 1 0.03
24 24 0.77
ACGTcount: A:0.05, C:0.08, G:0.07, T:0.80
Consensus pattern (24 bp):
TTTTTTTTTTTGTTTGCTTATTTC
Found at i:14623239 original size:22 final size:22
Alignment explanation
Indices: 14623207--14623265 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 22
14623197 GCTGTTTTGA
*
14623207 TTTT-TTTTTTTTTGTATTGCT
1 TTTTCTTTTTTTTTCTATTGCT
*
14623228 TTTTCTTTTTTTTTCTTTTGCT
1 TTTTCTTTTTTTTTCTATTGCT
14623250 TAATTTCTTTTTTTTT
1 T--TTTCTTTTTTTTT
14623266 TTGGGCTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 4 0.12
22 16 0.48
24 13 0.39
ACGTcount: A:0.05, C:0.08, G:0.05, T:0.81
Consensus pattern (22 bp):
TTTTCTTTTTTTTTCTATTGCT
Found at i:14623273 original size:23 final size:24
Alignment explanation
Indices: 14623229--14623273 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
14623219 TGTATTGCTT
**
14623229 TTTCTTTTTTTTTCTTTTGCTTAA
1 TTTCTTTTTTTTTCTTGGGCTTAA
14623253 TTTCTTTTTTTTT-TTGGGCTT
1 TTTCTTTTTTTTTCTTGGGCTT
14623274 TTGGGTTTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.04, C:0.11, G:0.09, T:0.76
Consensus pattern (24 bp):
TTTCTTTTTTTTTCTTGGGCTTAA
Found at i:14623432 original size:6 final size:7
Alignment explanation
Indices: 14623385--14623432 Score: 59
Period size: 6 Copynumber: 7.4 Consensus size: 7
14623375 AAAATATATT
14623385 TTCTTT-
1 TTCTTTC
14623391 TTCTTT-
1 TTCTTTC
*
14623397 TTTTTTC
1 TTCTTTC
14623404 TTCTTTC
1 TTCTTTC
14623411 TTCTTTC
1 TTCTTTC
14623418 TTC-TTC
1 TTCTTTC
14623424 TTC-TTC
1 TTCTTTC
14623430 TTC
1 TTC
14623433 CTTGAACCTT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
6 23 0.59
7 16 0.41
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (7 bp):
TTCTTTC
Found at i:14623794 original size:30 final size:30
Alignment explanation
Indices: 14623760--14623926 Score: 133
Period size: 30 Copynumber: 5.6 Consensus size: 30
14623750 AAACGCAGGA
*
14623760 AAAGTTTTGGGG-CTAAAACATAATTTTGAG
1 AAAGTTTAGGGGTC-AAAACATAATTTTGAG
* **
14623790 AAAGTGTAGGGGTCAAAATGTAATTTTGAG
1 AAAGTTTAGGGGTCAAAACATAATTTTGAG
* ** *
14623820 AAAGTTTAGGAGTCAAAATGTAATTTAGA-
1 AAAGTTTAGGGGTCAAAACATAATTTTGAG
** ** *
14623849 AAAGTTTAGGGGTTGAAATGTAATTTTGAA
1 AAAGTTTAGGGGTCAAAACATAATTTTGAG
** **
14623879 AAAACTTAGGGGTCAAAATGTAATTTT-AG
1 AAAGTTTAGGGGTCAAAACATAATTTTGAG
*
14623908 AAAAGTTCAGGGGTCAAAA
1 -AAAGTTTAGGGGTCAAAA
14623927 TGGAAATTTT
Statistics
Matches: 115, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
29 26 0.23
30 88 0.77
31 1 0.01
ACGTcount: A:0.40, C:0.05, G:0.25, T:0.31
Consensus pattern (30 bp):
AAAGTTTAGGGGTCAAAACATAATTTTGAG
Found at i:14623868 original size:59 final size:59
Alignment explanation
Indices: 14623780--14623928 Score: 199
Period size: 59 Copynumber: 2.5 Consensus size: 59
14623770 GGCTAAAACA
* * * **
14623780 TAATTTTGAGAAAGTGTAGGGGTCAAAATGTAATTTTGAGAAAGTTTAGGAGTCAAAATG
1 TAATTTAGA-AAAGTTTAGGGGTCAAAATGTAATTTTGAAAAAACTTAGGAGTCAAAATG
** *
14623840 TAATTTAGAAAAGTTTAGGGGTTGAAATGTAATTTTGAAAAAACTTAGGGGTCAAAATG
1 TAATTTAGAAAAGTTTAGGGGTCAAAATGTAATTTTGAAAAAACTTAGGAGTCAAAATG
*
14623899 TAATTTTAGAAAAGTTCAGGGGTCAAAATG
1 TAA-TTTAGAAAAGTTTAGGGGTCAAAATG
14623929 GAAATTTTTT
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
59 46 0.60
60 31 0.40
ACGTcount: A:0.40, C:0.04, G:0.25, T:0.32
Consensus pattern (59 bp):
TAATTTAGAAAAGTTTAGGGGTCAAAATGTAATTTTGAAAAAACTTAGGAGTCAAAATG
Found at i:14623927 original size:30 final size:29
Alignment explanation
Indices: 14623780--14623928 Score: 169
Period size: 30 Copynumber: 5.0 Consensus size: 29
14623770 GGCTAAAACA
14623780 TAATTTT-GAGAAAGTGTAGGGGTCAAAATG
1 TAATTTTAGA-AAAGT-TAGGGGTCAAAATG
*
14623810 TAATTTT-GAGAAAGTTTAGGAGTCAAAATG
1 TAATTTTAGA-AAAG-TTAGGGGTCAAAATG
**
14623840 TAA-TTTAGAAAAGTTTAGGGGTTGAAATG
1 TAATTTTAGAAAAG-TTAGGGGTCAAAATG
* *
14623869 TAATTTTGAAAAAACTTAGGGGTCAAAATG
1 TAATTTT-AGAAAAGTTAGGGGTCAAAATG
14623899 TAATTTTAGAAAAGTTCAGGGGTCAAAATG
1 TAATTTTAGAAAAGTT-AGGGGTCAAAATG
14623929 GAAATTTTTT
Statistics
Matches: 104, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
29 30 0.29
30 68 0.65
31 6 0.06
ACGTcount: A:0.40, C:0.04, G:0.25, T:0.32
Consensus pattern (29 bp):
TAATTTTAGAAAAGTTAGGGGTCAAAATG
Found at i:14624280 original size:78 final size:78
Alignment explanation
Indices: 14624120--14624636 Score: 758
Period size: 78 Copynumber: 6.6 Consensus size: 78
14624110 GTGTGGCCCA
* * * * *
14624120 AGGCTCAACTCACCTCTAGCATTAT-ATGTTGATTTTTTGAAAAACAGAAATTGAAA--AGATAC
1 AGGCTCAACTCACCTCTCGCAATATGA-GTTGA-TTTTTAAAAAACAGAAATTTAAACGAAATAC
*
14624182 CTCGGCATGTGACCG
64 CTCGGCATGTGTCCG
* *
14624197 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAACGAAATACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAACAGAAATTTAAACGAAATACCT
*
14624262 CGGCATGTCTCCG
66 CGGCATGTGTCCG
* * *
14624275 AGGCTCAACTCACCTCTCGCATTATGAGTTGATTTTTTGAAAAATAGAAATTTAAACGAAATACC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTAAAAAACAGAAATTTAAACGAAATACC
14624340 TCGGCATGTGTCCG
65 TCGGCATGTGTCCG
* * *
14624354 AGGCTCAACTTACCTCTCGCAATATGAGTTGA-TTTAAAAAGAACAAAAATTTAAACGAAATACC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAA-AACAGAAATTTAAACGAAATACC
14624418 TCGGCATGTGTCCG
65 TCGGCATGTGTCCG
*
14624432 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTAAAAAGAACAGAAATTTAAACGAAATACC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAA-AACAGAAATTTAAACGAAATACC
14624496 TCGGCATGTGTCCG
65 TCGGCATGTGTCCG
*
14624510 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTAAAAAGAACAGAAATTTAAACGAAATACC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAA-AACAGAAATTTAAACGAAATACC
14624574 TCGGCATGTGTCCG
65 TCGGCATGTGTCCG
* * *
14624588 AGGCTCAACTTAACTCTTGCAATATGAGTTGATTTTTAAAAAACAGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAACAGAAA
14624637 ATAAAAAATT
Statistics
Matches: 411, Mismatches: 23, Indels: 11
0.92 0.05 0.02
Matches are distributed among these distances:
76 22 0.05
77 33 0.08
78 275 0.67
79 81 0.20
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.27
Consensus pattern (78 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAACAGAAATTTAAACGAAATACCT
CGGCATGTGTCCG
Found at i:14629791 original size:15 final size:16
Alignment explanation
Indices: 14629764--14629793 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14629754 GAATAGAGGT
14629764 GAACTGAGGTTTTGCA
1 GAACTGAGGTTTTGCA
14629780 GAACTG-GGTTTTGC
1 GAACTGAGGTTTTGC
14629794 TGGTCCTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.20, C:0.13, G:0.33, T:0.33
Consensus pattern (16 bp):
GAACTGAGGTTTTGCA
Found at i:14633801 original size:22 final size:21
Alignment explanation
Indices: 14633760--14633803 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
14633750 GACATGAAGA
*
14633760 TTTTTGAAACACAGGAATTTT
1 TTTTTGAAACACAAGAATTTT
14633781 TTTTTGAAAACACGAAG-ATTTT
1 TTTTTG-AAACAC-AAGAATTTT
14633803 T
1 T
14633804 GAAACAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 6 0.30
22 12 0.60
23 2 0.10
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (21 bp):
TTTTTGAAACACAAGAATTTT
Found at i:14633892 original size:35 final size:35
Alignment explanation
Indices: 14633622--14634279 Score: 387
Period size: 36 Copynumber: 18.5 Consensus size: 35
14633612 TTTTTTTTCG
*
14633622 AAAACACGAAAAATTTTT-AAAACACGAGAA-TTTT
1 AAAACACG-AAAATTTTTGAAAACACGAAAATTTTT
* * **
14633656 AGAGACACAAAAATTCTTAAAAAACACGAAAATTTTT
1 A-AAACACGAAAATT-TTTGAAAACACGAAAATTTTT
* * * * *
14633693 AAAACACGGTAATTTTTTGAAAACATGACAGTTTTT
1 AAAACAC-GAAAATTTTTGAAAACACGAAAATTTTT
* * * *
14633729 GAAAACATCG-GAATTTTTGAAGACATGAAGATTTTT
1 -AAAACA-CGAAAATTTTTGAAAACACGAAAATTTTT
* ** *
14633765 GAAACACAGGAATTTTTTTTTGAAAACACGAAGATTTTT
1 -AAA-ACACGAA--AATTTTTGAAAACACGAAAATTTTT
* * * * * *
14633804 GAAACA--ATTATTTTTTTAAAAAACGAAAATTTAT
1 AAAACACGA-AAATTTTTGAAAACACGAAAATTTTT
* ** *
14633838 GAAACACGAGATTTTTTTGAAAACACGAAAATTTTC
1 AAAACACGA-AAATTTTTGAAAACACGAAAATTTTT
* **
14633874 AAAACACCAAAATTTTTGAAAACACGAGGATTTTT
1 AAAACACGAAAATTTTTGAAAACACGAAAATTTTT
* * * **
14633909 GAAATACGAAAAATTTTGAAAACACTTAAATTTTT
1 AAAACACGAAAATTTTTGAAAACACGAAAATTTTT
*
14633944 GAAAACACGGAAATTTTT-AAAACAC-AAGAATTTTT
1 -AAAACACGAAAATTTTTGAAAACACGAA-AATTTTT
* *
14633979 GAAACGCGCAAAA-TTTTGAAAACACGAAAATTTTT
1 AAAACACG-AAAATTTTTGAAAACACGAAAATTTTT
* * *
14634014 GAAATACGAAAA-TTTT-ACAAACACAAAAATTTTT
1 AAAACACGAAAATTTTTGA-AAACACGAAAATTTTT
*
14634048 AAAACACGACAATTTTTG-AAACACGACAAATTTTTTTT
1 AAAACACGAAAATTTTTGAAAACACGA-AAA---TTTTT
* ** *
14634086 AAAACA-TAAAAAATTT-AAAACACGAAAATTTAT
1 AAAACACGAAAATTTTTGAAAACACGAAAATTTTT
* * * * *
14634119 GAAACACGAGAATTGTTGAAAATACAAAAATTTTT
1 AAAACACGAAAATTTTTGAAAACACGAAAATTTTT
* *
14634154 GAAAACACAAAAATTTTTG-AAACAC-AAAAATTTT
1 -AAAACACGAAAATTTTTGAAAACACGAAAATTTTT
* *
14634188 AGAAACATGGAAATTTTTAGAAAACACGGAAAA-TTTT
1 A-AAACACGAAAATTTTT-GAAAACAC-GAAAATTTTT
** * * *
14634225 GGATCGCCG-GAATTTTTGAAAACACGAAAATTTTT
1 AAAAC-ACGAAAATTTTTGAAAACACGAAAATTTTT
*
14634260 GAAAACGCGGAAAGATTTTT
1 -AAAACAC-GAAA-ATTTTT
14634280 TTTTACACAA
Statistics
Matches: 480, Mismatches: 103, Indels: 78
0.73 0.16 0.12
Matches are distributed among these distances:
33 11 0.02
34 114 0.24
35 133 0.28
36 135 0.28
37 42 0.09
38 24 0.05
39 21 0.04
ACGTcount: A:0.47, C:0.11, G:0.12, T:0.30
Consensus pattern (35 bp):
AAAACACGAAAATTTTTGAAAACACGAAAATTTTT
Found at i:14634115 original size:15 final size:16
Alignment explanation
Indices: 14634095--14634223 Score: 62
Period size: 18 Copynumber: 7.4 Consensus size: 16
14634085 TAAAACATAA
14634095 AAAATTTA-AAACACG
1 AAAATTTAGAAACACG
14634110 AAAATTTATGAAACACG
1 AAAATTTA-GAAACACG
* * * *
14634127 AGAATTGTTGAAAATACA
1 AAAATT-TAG-AAACACG
* *
14634145 AAAATTTTTGAAAACACA
1 AAAA-TTTAG-AAACACG
* *
14634163 AAAATTTTTGAAACACA
1 AAAA-TTTAGAAACACG
*
14634180 AAAATTTTAGAAACATGG
1 AAAA-TTTAGAAACA-CG
*
14634198 AAATTTTTAGAAAACACGG
1 AAA-ATTTAG-AAACAC-G
14634217 AAAATTT
1 AAAATTT
14634224 TGGATCGCCG
Statistics
Matches: 93, Mismatches: 12, Indels: 15
0.77 0.10 0.12
Matches are distributed among these distances:
15 8 0.09
17 34 0.37
18 40 0.43
19 11 0.12
ACGTcount: A:0.53, C:0.09, G:0.11, T:0.27
Consensus pattern (16 bp):
AAAATTTAGAAACACG
Done.