Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62769430
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1067035 characters in sequence are not A, C, G, or T
File 53 of 206
Found at i:14935938 original size:84 final size:82
Alignment explanation
Indices: 14935816--14936094 Score: 295
Period size: 84 Copynumber: 3.5 Consensus size: 82
14935806 AATGAGTGAG
* * * * * * *
14935816 GCATGGTCTTGACAGACAAGTGGTAGGGGTGCCAAGAACCATAAATGATAACTTGTATTACATGT
1 GCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTAAATGGTAACTTGTATTACATGC
14935881 ATGAGCATGAACAAGCAAA
66 ATGAGCA-GAAC-AGCAAA
* * *
14935900 GCATAGTCTTGACAGACAAAAGGTAGAGGTGCCAAGAACCTTACATGGTAACTTGTATTACATGC
1 GCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTAAATGGTAACTTGTATTACATGC
*
14935965 ATGAGC-G---TG-AAA
66 ATGAGCAGAACAGCAAA
* * * *
14935977 --ATAGTCTTGACAGACGAATGATAGAGATGCCAAGAACTTTAAATGGTAACTCGTATTACATGC
1 GCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTAAATGGTAACTTGTATTACATGC
* * *
14936040 ATGAGCACAAGCCAGCGAG
66 ATGAGCAGAA--CAGCAAA
*
14936059 GCAT-GTGTTGACAGACAAATGGTAGAGATGCCAAGA
1 GCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGA
14936095 GCTTTGTGTT
Statistics
Matches: 163, Mismatches: 23, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
75 62 0.38
77 3 0.02
78 1 0.01
81 1 0.01
82 2 0.01
83 29 0.18
84 65 0.40
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.22
Consensus pattern (82 bp):
GCATAGTCTTGACAGACAAATGGTAGAGATGCCAAGAACCTTAAATGGTAACTTGTATTACATGC
ATGAGCAGAACAGCAAA
Found at i:14936002 original size:75 final size:75
Alignment explanation
Indices: 14935902--14936045 Score: 225
Period size: 75 Copynumber: 1.9 Consensus size: 75
14935892 CAAGCAAAGC
* * * *
14935902 ATAGTCTTGACAGACAAAAGGTAGAGGTGCCAAGAACCTTACATGGTAACTTGTATTACATGCAT
1 ATAGTCTTGACAGACAAAAGATAGAGATGCCAAGAACCTTAAATGGTAACTCGTATTACATGCAT
14935967 GAGCGTGAAA
66 GAGCGTGAAA
* * *
14935977 ATAGTCTTGACAGACGAATGATAGAGATGCCAAGAACTTTAAATGGTAACTCGTATTACATGCAT
1 ATAGTCTTGACAGACAAAAGATAGAGATGCCAAGAACCTTAAATGGTAACTCGTATTACATGCAT
14936042 GAGC
66 GAGC
14936046 ACAAGCCAGC
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
75 62 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (75 bp):
ATAGTCTTGACAGACAAAAGATAGAGATGCCAAGAACCTTAAATGGTAACTCGTATTACATGCAT
GAGCGTGAAA
Found at i:14942053 original size:78 final size:78
Alignment explanation
Indices: 14941924--14942084 Score: 304
Period size: 78 Copynumber: 2.1 Consensus size: 78
14941914 GTATTCATGT
14941924 AAGCATACAACTTGTTTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCACTAAAC
1 AAGCATACAACTTGTTTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCACTAAAC
14941989 ATCAAGTAAAGCA
66 ATCAAGTAAAGCA
* *
14942002 AAGCATGCAACTTGTTTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTGGGCACTAAAC
1 AAGCATACAACTTGTTTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCACTAAAC
14942067 ATCAAGTAAAGCA
66 ATCAAGTAAAGCA
14942080 AAGCA
1 AAGCA
14942085 ACCAAAGATA
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
78 81 1.00
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.29
Consensus pattern (78 bp):
AAGCATACAACTTGTTTAGATGTAGTCAATAATCATATGAATTTAGAATTAGTTAGGCACTAAAC
ATCAAGTAAAGCA
Found at i:14942505 original size:84 final size:84
Alignment explanation
Indices: 14942364--14942522 Score: 246
Period size: 84 Copynumber: 1.9 Consensus size: 84
14942354 TTCATGCTCA
* * *
14942364 TGCTCATGCATGTAGTACAAGTTACCATTCAAGGCTCCTGGCATCTCTACCATTTGTCTGTCAAC
1 TGCTCATGCATGTAATACAAGTTACCATTCAAGGCTCCTGGCACCTCTACCAATTGTCTGTCAAC
*
14942429 ACTATGCCTCGCTGGCTTG
66 ACCATGCCTCGCTGGCTTG
* * * *
14942448 TGCTCATGCATGTAATACGAGTTACCATTCAAGGTTCTTGGCACCTCTACCAATTGTCTGTCAAG
1 TGCTCATGCATGTAATACAAGTTACCATTCAAGGCTCCTGGCACCTCTACCAATTGTCTGTCAAC
14942513 ACCATGCCTC
66 ACCATGCCTC
14942523 AAGCTTCCTA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
84 67 1.00
ACGTcount: A:0.22, C:0.28, G:0.18, T:0.31
Consensus pattern (84 bp):
TGCTCATGCATGTAATACAAGTTACCATTCAAGGCTCCTGGCACCTCTACCAATTGTCTGTCAAC
ACCATGCCTCGCTGGCTTG
Found at i:14946225 original size:3 final size:3
Alignment explanation
Indices: 14946217--14946271 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
14946207 GTAGACCAGG
14946217 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14946265 ATA ATA A
1 ATA ATA A
14946272 AGCGGATGGT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14946672 original size:26 final size:26
Alignment explanation
Indices: 14946637--14946691 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
14946627 TATGTTGTGC
14946637 TTCTTCTTTGTGGTCACTGTGGATTG
1 TTCTTCTTTGTGGTCACTGTGGATTG
14946663 TTCTTCTTTGTGGTCACTGTGGATTG
1 TTCTTCTTTGTGGTCACTGTGGATTG
14946689 TTC
1 TTC
14946692 GTAATGAGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.07, C:0.16, G:0.25, T:0.51
Consensus pattern (26 bp):
TTCTTCTTTGTGGTCACTGTGGATTG
Found at i:14955438 original size:44 final size:44
Alignment explanation
Indices: 14955375--14955463 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
14955365 TGCAACTTAA
14955375 ACCTAGGCCACACCTAAGGCAGTGATTACCCTGACCATTAGGCC
1 ACCTAGGCCACACCTAAGGCAGTGATTACCCTGACCATTAGGCC
14955419 ACCTAGGCCACACCTAAGGCAGTGATTACCCTGACCATTAGGCC
1 ACCTAGGCCACACCTAAGGCAGTGATTACCCTGACCATTAGGCC
14955463 A
1 A
14955464 ACACACGAGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.28, C:0.34, G:0.20, T:0.18
Consensus pattern (44 bp):
ACCTAGGCCACACCTAAGGCAGTGATTACCCTGACCATTAGGCC
Found at i:14958221 original size:23 final size:22
Alignment explanation
Indices: 14958192--14958352 Score: 144
Period size: 23 Copynumber: 7.0 Consensus size: 22
14958182 CTATCATCCA
*
14958192 CCAAACACAACCAATCATAGCCT
1 CCAAACACAACCAAT-ATACCCT
* * *
14958215 CTAAACAAAAACAAGT-TACCCT
1 CCAAACACAACCAA-TATACCCT
14958237 CCAAACACAACCAAATATACCCT
1 CCAAACACAACC-AATATACCCT
* *
14958260 CCGAACACAACCACATTTACCCT
1 CCAAACACAACCA-ATATACCCT
*
14958283 CCAAACACAACCATATATGTAACCT
1 CCAAACACAACCA-ATA--TACCCT
** * *
14958308 CTGAACACAACCAAGCATACCGT
1 CCAAACACAACCAA-TATACCCT
14958331 CCAAACACAACCAATATACCCT
1 CCAAACACAACCAATATACCCT
14958353 TCAACATATC
Statistics
Matches: 109, Mismatches: 22, Indels: 15
0.75 0.15 0.10
Matches are distributed among these distances:
22 22 0.20
23 68 0.62
24 2 0.02
25 17 0.16
ACGTcount: A:0.43, C:0.37, G:0.04, T:0.16
Consensus pattern (22 bp):
CCAAACACAACCAATATACCCT
Found at i:14958334 original size:48 final size:47
Alignment explanation
Indices: 14958230--14958348 Score: 147
Period size: 48 Copynumber: 2.6 Consensus size: 47
14958220 CAAAAACAAG
*
14958230 TTACCCTCCAAACACAACCA-A-ATATACCCTCCGAACACAACCACA
1 TTACCCTCCAAACACAACCATATATATAACCTCCGAACACAACCACA
* *
14958275 TTTACCCTCCAAACACAACCATATATGTAACCTCTGAACACAACCAAGCA
1 -TTACCCTCCAAACACAACCATATATATAACCTCCGAACACAACC-A-CA
*
14958325 -TACCGTCCAAACACAACCA-ATATA
1 TTACCCTCCAAACACAACCATATATA
14958349 CCCTTCAACA
Statistics
Matches: 64, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
46 20 0.31
47 5 0.08
48 36 0.56
49 1 0.02
50 2 0.03
ACGTcount: A:0.42, C:0.37, G:0.04, T:0.17
Consensus pattern (47 bp):
TTACCCTCCAAACACAACCATATATATAACCTCCGAACACAACCACA
Found at i:14962466 original size:18 final size:18
Alignment explanation
Indices: 14962445--14962482 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
14962435 TTCCAAAAAA
*
14962445 TTATTC-ATTTACAAATCG
1 TTATTCAATTT-CAAAACG
14962463 TTATTCAATTTCAAAACG
1 TTATTCAATTTCAAAACG
14962481 TT
1 TT
14962483 TTCTTATTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.34, C:0.16, G:0.05, T:0.45
Consensus pattern (18 bp):
TTATTCAATTTCAAAACG
Found at i:14966395 original size:22 final size:22
Alignment explanation
Indices: 14966370--14966446 Score: 66
Period size: 25 Copynumber: 3.2 Consensus size: 22
14966360 TGATATACAA
*
14966370 AGAGCACAAACGTGCTAAA-CAT
1 AGAGCAC-AACGTGCTAAATCAG
*
14966392 AGAGCACTGACGTGCTAGTAATCAG
1 AGAGCAC-AACGTGCTA--AATCAG
14966417 AGAGCAGCAACGTGCTAATAATCAG
1 AGAGCA-CAACGTGCT-A-AATCAG
14966442 AGAGC
1 AGAGC
14966447 GCGCTAAAGT
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
22 15 0.33
24 2 0.04
25 27 0.59
26 2 0.04
ACGTcount: A:0.39, C:0.21, G:0.25, T:0.16
Consensus pattern (22 bp):
AGAGCACAACGTGCTAAATCAG
Found at i:14966588 original size:2 final size:2
Alignment explanation
Indices: 14966581--14966621 Score: 59
Period size: 2 Copynumber: 21.0 Consensus size: 2
14966571 ACATTTACAC
14966581 AT AT AT AT AT AT AT AT AT AT AT AT AT -T CAT A- AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT
14966622 TCCAATTCAA
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
1 2 0.06
2 33 0.92
3 1 0.03
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:14969243 original size:21 final size:21
Alignment explanation
Indices: 14969189--14969261 Score: 87
Period size: 21 Copynumber: 3.5 Consensus size: 21
14969179 GTGGGGATCA
14969189 ACACGCCCGTATGAGGGAGGC
1 ACACGCCCGTATGAGGGAGGC
*
14969210 ACATGCCCGTATGAGGGAGGC
1 ACACGCCCGTATGAGGGAGGC
* *
14969231 ACACGACCATATGTAGGTGA--C
1 ACACGCCCGTATG-AGG-GAGGC
14969252 ACACGCCCGT
1 ACACGCCCGT
14969262 GTGTCCAAGG
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
21 39 0.89
22 3 0.07
23 2 0.05
ACGTcount: A:0.26, C:0.29, G:0.32, T:0.14
Consensus pattern (21 bp):
ACACGCCCGTATGAGGGAGGC
Found at i:14969962 original size:18 final size:17
Alignment explanation
Indices: 14969939--14969973 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
14969929 AAAGAAAAAG
14969939 GAGGAGATAAACGTGAAA
1 GAGGAGA-AAACGTGAAA
*
14969957 GAGGAGAGAACGTGAAA
1 GAGGAGAAAACGTGAAA
14969974 AAATAACTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.49, C:0.06, G:0.37, T:0.09
Consensus pattern (17 bp):
GAGGAGAAAACGTGAAA
Found at i:14971068 original size:46 final size:45
Alignment explanation
Indices: 14970998--14971136 Score: 206
Period size: 46 Copynumber: 3.0 Consensus size: 45
14970988 AAAATGCTAT
* *
14970998 AACTCAGTATGGTTTTCTTCACTGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTT-ACTGAAATACCATACCTACGTTACAC
14971044 AACTCAGTATGGTTTTCATTACTGAAATACCATACCTACGTTACAC
1 AACTCAGTATGGTTTTC-TTACTGAAATACCATACCTACGTTACAC
* * *
14971090 AACTTAGTATGGTTTTCTTTACTGAATTACCATACCTACGTTCCAC
1 AACTCAGTATGGTTTTC-TTACTGAAATACCATACCTACGTTACAC
14971136 A
1 A
14971137 CTTTGCCATG
Statistics
Matches: 86, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
46 84 0.98
47 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.36
Consensus pattern (45 bp):
AACTCAGTATGGTTTTCTTACTGAAATACCATACCTACGTTACAC
Found at i:14972655 original size:22 final size:22
Alignment explanation
Indices: 14972609--14972663 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
14972599 CAATAGGCTA
*
14972609 GTCTCAAGACAATTTGCCATAT
1 GTCTCGAGACAATTTGCCATAT
14972631 GTCTCGAGACAATTT-CTCGAT-T
1 GTCTCGAGACAATTTGC-C-ATAT
14972653 GTCTCGAGACA
1 GTCTCGAGACA
14972664 GGGCTCCCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 1 0.03
22 27 0.90
23 2 0.07
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (22 bp):
GTCTCGAGACAATTTGCCATAT
Found at i:14982043 original size:43 final size:43
Alignment explanation
Indices: 14981971--14982367 Score: 403
Period size: 43 Copynumber: 9.3 Consensus size: 43
14981961 TTTTAGAAAT
** * * * * *
14981971 AAACGCCGCTAAAGGTCTTGGTCTATAGCGGCGCTTGTCCAAC
1 AAACGCCGCTAAAGACCATGATCTTTAGCGGCGCTTTTCCCAC
* * ** *
14982014 AAACGCCGCTAAAGACCAAGACCTTTAGC-GCGC-TTTCAAAA
1 AAACGCCGCTAAAGACCATGATCTTTAGCGGCGCTTTTCCCAC
* * * *
14982055 AAACGCCGCTAAAGACAATGATCGTTAGTGGCGCTTTTCGCAC
1 AAACGCCGCTAAAGACCATGATCTTTAGCGGCGCTTTTCCCAC
* *
14982098 AAACGCCACGAAAGATCC-TGATCTTTAGCGGCG-TTTCTCCCAC
1 AAACGCCGCTAAAGA-CCATGATCTTTAGCGGCGCTTT-TCCCAC
* * *
14982141 AAGCGCCGCTAAAGACCCTCG-TCTTTAGCGGCGCTTTTACCAC
1 AAACGCCGCTAAAGACCAT-GATCTTTAGCGGCGCTTTTCCCAC
* * *
14982184 AAACGCCGCTAAAGAGCATGGTCTTTAGCGGCGCTTCTCCCAC
1 AAACGCCGCTAAAGACCATGATCTTTAGCGGCGCTTTTCCCAC
* * * *
14982227 AAACGCCGTTAAAGACCCTCG-TCTTTAACGGCCCTTTTCCCAC
1 AAACGCCGCTAAAGACCAT-GATCTTTAGCGGCGCTTTTCCCAC
* * *
14982270 AAACGCCGCTAAAGAGCATGGTCTTTAGCGGCACTTTTCCCAC
1 AAACGCCGCTAAAGACCATGATCTTTAGCGGCGCTTTTCCCAC
* *
14982313 AAACGCCGCTAAAGAAC-TGGTCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCATGATCTTTAGCGGCGCTTTTCCCAC
*
14982355 AAACGCCACTAAA
1 AAACGCCGCTAAA
14982368 TTTGGCAGAT
Statistics
Matches: 297, Mismatches: 47, Indels: 21
0.81 0.13 0.06
Matches are distributed among these distances:
41 29 0.10
42 51 0.17
43 211 0.71
44 6 0.02
ACGTcount: A:0.26, C:0.31, G:0.20, T:0.22
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGATCTTTAGCGGCGCTTTTCCCAC
Found at i:14982089 original size:42 final size:41
Alignment explanation
Indices: 14982000--14982091 Score: 105
Period size: 41 Copynumber: 2.2 Consensus size: 41
14981990 GGTCTATAGC
* * *
14982000 GGCGCTTGTCCAACAAACGCCGCTAAAGACCAAGACCTTTAG
1 GGCGCTT-TCAAAAAAACGCCGCTAAAGACCAAGACCGTTAG
* *
14982042 CGCGCTTTCAAAAAAACGCCGCTAAAGA-CAATGATCGTTAG
1 GGCGCTTTCAAAAAAACGCCGCTAAAGACCAA-GACCGTTAG
14982083 TGGCGCTTT
1 -GGCGCTTT
14982092 TCGCACAAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
40 3 0.07
41 26 0.62
42 13 0.31
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (41 bp):
GGCGCTTTCAAAAAAACGCCGCTAAAGACCAAGACCGTTAG
Found at i:14982514 original size:22 final size:23
Alignment explanation
Indices: 14982479--14982521 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
14982469 TATAATATTT
*
14982479 AAAATTAAACAAATAATATAATA
1 AAAATTAAACAAATAAAATAATA
*
14982502 AAAATT-AATAAATAAAATAA
1 AAAATTAAACAAATAAAATAA
14982522 AATTCGTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (23 bp):
AAAATTAAACAAATAAAATAATA
Found at i:14982712 original size:21 final size:20
Alignment explanation
Indices: 14982686--14982777 Score: 76
Period size: 21 Copynumber: 4.4 Consensus size: 20
14982676 TTTTACGCTG
14982686 CTCTGCTTCCATCGCTGCAGC
1 CTCTGCTTCC-TCGCTGCAGC
* * **
14982707 CTCTGCTGCCCTCACTATAGC
1 CTCTGCT-TCCTCGCTGCAGC
* *
14982728 CTCTACTTCTTTCGCTGCAGC
1 CTCTGCTTC-CTCGCTGCAGC
*
14982749 CTCTGCTTCTCTCGCTGCCGC
1 CTCTGCTTC-CTCGCTGCAGC
*
14982770 ATCTGCTT
1 CTCTGCTT
14982778 TAAGCTGCTG
Statistics
Matches: 55, Mismatches: 14, Indels: 4
0.75 0.19 0.05
Matches are distributed among these distances:
20 1 0.02
21 52 0.95
22 2 0.04
ACGTcount: A:0.09, C:0.41, G:0.16, T:0.34
Consensus pattern (20 bp):
CTCTGCTTCCTCGCTGCAGC
Found at i:14982914 original size:66 final size:65
Alignment explanation
Indices: 14982748--14982918 Score: 236
Period size: 66 Copynumber: 2.6 Consensus size: 65
14982738 TTCGCTGCAG
* * * *
14982748 CCTCTGCTTCTCTCGCTGCCGCATCTGCTTTAAGCTGCTGCTGGAGTTCTTCATACTTTCGTTGA
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTTG-TGCTAGAGTTCTTCATACTTTCGTTGA
14982813 A
65 A
*
14982814 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTTGTAGCTAGAGTTCTTCATATCTTT-TTTG
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTTGT-GCTAGAGTTCTTCATA-CTTTCGTTG
14982878 AA
64 AA
* * *
14982880 CCTCAGCTTCTCTCGATGTTGCCTCTGCTTTAAGTTGTG
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTTGTG
14982919 TAATTTGCTC
Statistics
Matches: 95, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
65 2 0.02
66 89 0.94
67 4 0.04
ACGTcount: A:0.13, C:0.27, G:0.19, T:0.40
Consensus pattern (65 bp):
CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTTGTGCTAGAGTTCTTCATACTTTCGTTGAA
Found at i:14985002 original size:2 final size:2
Alignment explanation
Indices: 14984986--14985033 Score: 55
Period size: 2 Copynumber: 25.0 Consensus size: 2
14984976 GTATACATGC
* * *
14984986 AT AT AT AA AT A- AT AT AT AT AT AA AT AA AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14985027 -T AT AT AT
1 AT AT AT AT
14985034 CTCTTAATTT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
1 2 0.05
2 36 0.95
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:14985017 original size:16 final size:15
Alignment explanation
Indices: 14984986--14985033 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 15
14984976 GTATACATGC
14984986 ATATATAAATAATAT
1 ATATATAAATAATAT
14985001 ATATATAAATAA-AT
1 ATATATAAATAATAT
* *
14985015 ATATATATATATTAT
1 ATATATAAATAATAT
14985030 ATAT
1 ATAT
14985034 CTCTTAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 12 0.40
15 18 0.60
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATATATAAATAATAT
Found at i:14985498 original size:22 final size:20
Alignment explanation
Indices: 14985425--14985505 Score: 81
Period size: 21 Copynumber: 3.7 Consensus size: 20
14985415 TACCCTTGAC
*
14985425 ACCCTAAACCCTAAATCTCTA
1 ACCCT-AACCCTAAATCCCTA
14985446 ACCCTTAACCCTTAAATCTCCTA
1 ACCC-TAACCC-TAAATC-CCTA
14985469 ACCCCTAATCCCTAAATCCCTA
1 A-CCCTAA-CCCTAAATCCCTA
*
14985491 ACCTCTAACCGTAAA
1 ACC-CTAACCCTAAA
14985506 CCTTATATCC
Statistics
Matches: 52, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
21 17 0.33
22 16 0.31
23 13 0.25
24 6 0.12
ACGTcount: A:0.35, C:0.40, G:0.01, T:0.25
Consensus pattern (20 bp):
ACCCTAACCCTAAATCCCTA
Found at i:14986501 original size:41 final size:41
Alignment explanation
Indices: 14986456--14986650 Score: 146
Period size: 42 Copynumber: 4.7 Consensus size: 41
14986446 AATGGTTTTT
*
14986456 GCGGCGCTTCAACAAAAACGCCGCTAAAAACCCTAACATTA
1 GCGGCGCTTCAATAAAAACGCCGCTAAAAACCCTAACATTA
* *
14986497 GCGGCGCTT-ATCATAAAAACGCCGCTAAAAGA-CCAAATATTA
1 GCGGCGCTTCA--ATAAAAACGCCGCTAAAA-ACCCTAACATTA
** * **
14986539 GCGGCGCTTCAA-AGAAATTGCCGCTAAATACCCTAATGTTA
1 GCGGCGCTTCAATA-AAAACGCCGCTAAAAACCCTAACATTA
* * * * * * *
14986580 GCGGCGGTTGATTAAAAACGCCACTAAAACCGCCGACCATTA
1 GCGGCGCTTCAATAAAAACGCCGCTAAAAAC-CCTAACATTA
** *
14986622 GCGGCGAAT-ATTTAAAAACGCCGCTAAAA
1 GCGGCGCTTCA-ATAAAAACGCCGCTAAAA
14986651 GTCAAAGCAT
Statistics
Matches: 122, Mismatches: 23, Indels: 17
0.75 0.14 0.10
Matches are distributed among these distances:
40 3 0.02
41 52 0.43
42 65 0.53
43 2 0.02
ACGTcount: A:0.37, C:0.26, G:0.18, T:0.18
Consensus pattern (41 bp):
GCGGCGCTTCAATAAAAACGCCGCTAAAAACCCTAACATTA
Found at i:14986519 original size:42 final size:41
Alignment explanation
Indices: 14986456--14986690 Score: 149
Period size: 41 Copynumber: 5.7 Consensus size: 41
14986446 AATGGTTTTT
*
14986456 GCGGCGCTTCA-ACAAAAACGCCGCTAAAAACCCTAACATTA
1 GCGGCGCTT-ATATAAAAACGCCGCTAAAAACCCTAACATTA
* *
14986497 GCGGCGCTTATCATAAAAACGCCGCTAAAAGA-CCAAATATTA
1 GCGGCGCTTAT-ATAAAAACGCCGCTAAAA-ACCCTAACATTA
** * **
14986539 GCGGCGCTTCA-A-AGAAATTGCCGCTAAATACCCTAATGTTA
1 GCGGCGCTT-ATATA-AAAACGCCGCTAAAAACCCTAACATTA
* * * * *
14986580 GCGGCGGTTGAT-TAAAAACGCCACTAAAACCGCCGACCATTA
1 GCGGCGCTT-ATATAAAAACGCCGCTAAAAAC-CCTAACATTA
** * ** *
14986622 GCGGCGAATATTTAAAAACGCCGCT-AAAAGTCAAAGCATTA
1 GCGGCGCTTATATAAAAACGCCGCTAAAAACCCTAA-CATTA
* ** *
14986663 GCGGCGCTAATGCAAAAACGCCACTAAA
1 GCGGCGCTTATATAAAAACGCCGCTAAA
14986691 GCCCTCCGAA
Statistics
Matches: 149, Mismatches: 33, Indels: 23
0.73 0.16 0.11
Matches are distributed among these distances:
40 5 0.03
41 80 0.54
42 62 0.42
43 2 0.01
ACGTcount: A:0.37, C:0.26, G:0.19, T:0.18
Consensus pattern (41 bp):
GCGGCGCTTATATAAAAACGCCGCTAAAAACCCTAACATTA
Found at i:14986627 original size:83 final size:82
Alignment explanation
Indices: 14986456--14986608 Score: 193
Period size: 83 Copynumber: 1.9 Consensus size: 82
14986446 AATGGTTTTT
*
14986456 GCGGCGCTTCAACAAAAACGCCGCTAAAAACCCTAACATTAGCGGCGCTTATCATAAAAACGCCG
1 GCGGCGCTTCAACAAAAACGCCGCTAAAAACCCTAACATTAGCGGCGCTTAT-ATAAAAACGCCA
*
14986521 CTAAAAGACCAAATATTA
65 CTAAAAGACCAAACATTA
** * ** *
14986539 GCGGCGCTTCAA-AGAAATTGCCGCTAAATACCCTAATGTTAGCGGCGGTTGAT-TAAAAACGCC
1 GCGGCGCTTCAACA-AAAACGCCGCTAAAAACCCTAACATTAGCGGCGCTT-ATATAAAAACGCC
14986602 ACTAAAA
64 ACTAAAA
14986609 CCGCCGACCA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
82 17 0.28
83 42 0.69
84 2 0.03
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.19
Consensus pattern (82 bp):
GCGGCGCTTCAACAAAAACGCCGCTAAAAACCCTAACATTAGCGGCGCTTATATAAAAACGCCAC
TAAAAGACCAAACATTA
Found at i:14996476 original size:18 final size:19
Alignment explanation
Indices: 14996422--14996481 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
14996412 TAGGATTCTG
*
14996422 TATATCTGTTCTACA-TATC
1 TATATCTGTTAT-CAGTATC
*
14996441 TGAT-TCTGTTATCTGTATC
1 T-ATATCTGTTATCAGTATC
14996460 TATATCTG-TATCAGTATC
1 TATATCTGTTATCAGTATC
14996478 TATA
1 TATA
14996482 AAGGACTTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
18 16 0.46
19 17 0.49
20 2 0.06
ACGTcount: A:0.25, C:0.17, G:0.10, T:0.48
Consensus pattern (19 bp):
TATATCTGTTATCAGTATC
Found at i:14999539 original size:22 final size:22
Alignment explanation
Indices: 14999514--14999558 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
14999504 AAAGTAAAAA
14999514 ATATATATATGAAAAATCTTTC
1 ATATATATATGAAAAATCTTTC
14999536 ATATATATATGAAAAATCTTTC
1 ATATATATATGAAAAATCTTTC
14999558 A
1 A
14999559 AGGTTTTCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (22 bp):
ATATATATATGAAAAATCTTTC
Found at i:15012758 original size:2 final size:2
Alignment explanation
Indices: 15012751--15012787 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
15012741 ATGAGTTTGA
15012751 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
15012788 AGGGATCTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:15016076 original size:94 final size:94
Alignment explanation
Indices: 15015970--15016161 Score: 384
Period size: 94 Copynumber: 2.0 Consensus size: 94
15015960 ATTAATGATC
15015970 AAATTAATTATTTTCAAAAGATTAGGGTCAAATTTATTTAAAAATAATAATCAAATTGAGAAAAA
1 AAATTAATTATTTTCAAAAGATTAGGGTCAAATTTATTTAAAAATAATAATCAAATTGAGAAAAA
15016035 TATAAAAAGTTACCCGAAAATTATTATGA
66 TATAAAAAGTTACCCGAAAATTATTATGA
15016064 AAATTAATTATTTTCAAAAGATTAGGGTCAAATTTATTTAAAAATAATAATCAAATTGAGAAAAA
1 AAATTAATTATTTTCAAAAGATTAGGGTCAAATTTATTTAAAAATAATAATCAAATTGAGAAAAA
15016129 TATAAAAAGTTACCCGAAAATTATTATGA
66 TATAAAAAGTTACCCGAAAATTATTATGA
15016158 AAAT
1 AAAT
15016162 AACTCATAGT
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
94 98 1.00
ACGTcount: A:0.52, C:0.06, G:0.09, T:0.33
Consensus pattern (94 bp):
AAATTAATTATTTTCAAAAGATTAGGGTCAAATTTATTTAAAAATAATAATCAAATTGAGAAAAA
TATAAAAAGTTACCCGAAAATTATTATGA
Found at i:15023234 original size:29 final size:29
Alignment explanation
Indices: 15023169--15023234 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
15023159 GATTTCGCGG
*
15023169 AAAATGGCCCATTCCGGTAAATAATCAAA
1 AAAACGGCCCATTCCGGTAAATAATCAAA
* * ** *
15023198 AAATCGGCCCATTTCGGTAAATTTTGAAA
1 AAAACGGCCCATTCCGGTAAATAATCAAA
15023227 AAAACGGC
1 AAAACGGC
15023235 TTTTATTGGT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.23
Consensus pattern (29 bp):
AAAACGGCCCATTCCGGTAAATAATCAAA
Found at i:15029570 original size:14 final size:15
Alignment explanation
Indices: 15029542--15029571 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
15029532 TCCCATATTT
15029542 TCCCTTTTCTTTCTA
1 TCCCTTTTCTTTCTA
15029557 TCCCTTTT-TTTCTA
1 TCCCTTTTCTTTCTA
15029571 T
1 T
15029572 GTTTACAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.07, C:0.30, G:0.00, T:0.63
Consensus pattern (15 bp):
TCCCTTTTCTTTCTA
Found at i:15045015 original size:82 final size:81
Alignment explanation
Indices: 15044918--15045074 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
15044908 ATTTACAAAT
* *
15044918 ATAATTCTATTTATTAAAGATTATTTTCATTTAATAAAATACAATTAATCTTTTTTATATAAAAT
1 ATAATGCTATTTATTAAAGATTATTTTCATTTAATAAAATACAATTAA-ATTTTTTATATAAAAT
15044983 TTAAACATTTTGTTGAA
65 TTAAACATTTTGTTGAA
* ***
15045000 ATAATGCTATTTATTAAAGATTATTTTTATTTAATAAAATGTTATTAAATTTTTTATATAAAATT
1 ATAATGCTATTTATTAAAGATTATTTTCATTTAATAAAATACAATTAAATTTTTTATATAAAATT
*
15045065 TAAATATTTT
66 TAAACATTTT
15045075 ATTAAAATTT
Statistics
Matches: 68, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
81 25 0.37
82 43 0.63
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (81 bp):
ATAATGCTATTTATTAAAGATTATTTTCATTTAATAAAATACAATTAAATTTTTTATATAAAATT
TAAACATTTTGTTGAA
Found at i:15045082 original size:19 final size:20
Alignment explanation
Indices: 15045044--15045095 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
15045034 TAAAATGTTA
*
15045044 TTAAATTTTTTATATAAAAT
1 TTAAATATTTTATATAAAAT
15045064 TTAAATATTTTAT-TAAAAT
1 TTAAATATTTTATATAAAAT
*
15045083 TT-AAGATTTTATA
1 TTAAATATTTTATA
15045096 GATGAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 9 0.31
19 8 0.28
20 12 0.41
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (20 bp):
TTAAATATTTTATATAAAAT
Found at i:15045093 original size:18 final size:20
Alignment explanation
Indices: 15045051--15045095 Score: 67
Period size: 18 Copynumber: 2.4 Consensus size: 20
15045041 TTATTAAATT
*
15045051 TTTTATATAAAATTTAAATA
1 TTTTATATAAAATTTAAAGA
15045071 TTTTAT-TAAAATTT-AAGA
1 TTTTATATAAAATTTAAAGA
15045089 TTTTATA
1 TTTTATA
15045096 GATGAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 9 0.39
19 8 0.35
20 6 0.26
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (20 bp):
TTTTATATAAAATTTAAAGA
Found at i:15045718 original size:19 final size:19
Alignment explanation
Indices: 15045694--15045737 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
15045684 TTGTTTCTCG
*
15045694 GTTTCTGCATATTTGCTCA
1 GTTTCTGCAGATTTGCTCA
*
15045713 GTTTCTGCCGATTTGCTCA
1 GTTTCTGCAGATTTGCTCA
15045732 GTTTCT
1 GTTTCT
15045738 TTTTTTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.48
Consensus pattern (19 bp):
GTTTCTGCAGATTTGCTCA
Found at i:15048193 original size:18 final size:18
Alignment explanation
Indices: 15048165--15048215 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
15048155 ATTATTAAGA
15048165 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
15048182 ATTTTAATTAAA--ATAT
1 ATTTTAATTAAATTATAT
*
15048198 A-TTTAATAATAATTATAT
1 ATTTTAATTA-AATTATAT
15048216 TAAAATATGA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
15 7 0.24
16 7 0.24
17 5 0.17
18 10 0.34
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTTTAATTAAATTATAT
Found at i:15048242 original size:26 final size:25
Alignment explanation
Indices: 15048150--15048242 Score: 62
Period size: 26 Copynumber: 3.4 Consensus size: 25
15048140 CATATAAGAA
* *
15048150 TATTGATTATTAAGAATTTTATTAAAT
1 TATTTATTATTAA-AA-TATATTAAAT
* *
15048177 TATATATTTTAATTAAAATATATTTAATAA
1 TAT-T-TATT-ATTAAAATATA-TTAA-AT
*
15048207 TAATTA-TATTAAAATATGATTAAAT
1 TATTTATTATTAAAATAT-ATTAAAT
15048232 TATTTATTATT
1 TATTTATTATT
15048243 GATATTAATA
Statistics
Matches: 51, Mismatches: 8, Indels: 15
0.69 0.11 0.20
Matches are distributed among these distances:
25 6 0.12
26 18 0.35
27 5 0.10
28 5 0.10
29 9 0.18
30 8 0.16
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (25 bp):
TATTTATTATTAAAATATATTAAAT
Found at i:15048419 original size:44 final size:45
Alignment explanation
Indices: 15048356--15048452 Score: 144
Period size: 45 Copynumber: 2.2 Consensus size: 45
15048346 CTATTACACC
*
15048356 TCCATTTCATTCAACCAAACACA-AG-AATACTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACA-ATAGAAATACTATTACGCCTCTAT
* *
15048400 TCCATTACATTCAACCAAACAATTGAAATGCTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACAATAGAAATACTATTACGCCTCTAT
15048445 TCCATTAC
1 TCCATTAC
15048453 GCCTCTATTC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
43 1 0.02
44 21 0.44
45 26 0.54
ACGTcount: A:0.35, C:0.29, G:0.05, T:0.31
Consensus pattern (45 bp):
TCCATTACATTCAACCAAACAATAGAAATACTATTACGCCTCTAT
Found at i:15048453 original size:16 final size:16
Alignment explanation
Indices: 15048432--15048464 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
15048422 TTGAAATGCT
15048432 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
15048448 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
15048464 A
1 A
15048465 ATACAGCGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.36, G:0.06, T:0.36
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:15048745 original size:66 final size:66
Alignment explanation
Indices: 15048634--15048765 Score: 228
Period size: 66 Copynumber: 2.0 Consensus size: 66
15048624 GTTTATCCTA
* *
15048634 TCTTAATTCTAGCATTGTTGTTTGCCATGAGATTCTTTTTAGCCATTGGTAATCAAGTTCATCTT
1 TCTTAATTCTAGCATTGTTGTTTGCCATGAGATTCTTCTTAGCCATTGATAATCAAGTTCATCTT
15048699 G
66 G
* *
15048700 TCTTGATTCTAGCATTGTTGTTTGCCATGGGATTCTTCTTAGCCATTGATAATCAAGTTCATCTT
1 TCTTAATTCTAGCATTGTTGTTTGCCATGAGATTCTTCTTAGCCATTGATAATCAAGTTCATCTT
15048765 G
66 G
15048766 CGAATTCAAT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.20, C:0.17, G:0.17, T:0.45
Consensus pattern (66 bp):
TCTTAATTCTAGCATTGTTGTTTGCCATGAGATTCTTCTTAGCCATTGATAATCAAGTTCATCTT
G
Found at i:15053492 original size:2 final size:2
Alignment explanation
Indices: 15053485--15053517 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
15053475 ACGCACATAC
15053485 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
15053518 AGCATTATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15053883 original size:15 final size:15
Alignment explanation
Indices: 15053863--15053891 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
15053853 AAGATCAGCA
15053863 ATATAATATATATAT
1 ATATAATATATATAT
15053878 ATATAATATATATA
1 ATATAATATATATA
15053892 AAGAAATTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATATAATATATATAT
Found at i:15062523 original size:9 final size:9
Alignment explanation
Indices: 15062505--15062548 Score: 61
Period size: 9 Copynumber: 4.9 Consensus size: 9
15062495 TTTGGTTAAA
15062505 AATTAACCG
1 AATTAACCG
*
15062514 AATTACCCG
1 AATTAACCG
*
15062523 AATTAATCG
1 AATTAACCG
*
15062532 AATTATCCG
1 AATTAACCG
15062541 AATTAACC
1 AATTAACC
15062549 NNNNNNNNNN
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.41, C:0.23, G:0.09, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:15062528 original size:18 final size:18
Alignment explanation
Indices: 15062505--15062548 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
15062495 TTTGGTTAAA
15062505 AATTAACCGAATTACCCG
1 AATTAACCGAATTACCCG
* *
15062523 AATTAATCGAATTATCCG
1 AATTAACCGAATTACCCG
15062541 AATTAACC
1 AATTAACC
15062549 NNNNNNNNNN
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.41, C:0.23, G:0.09, T:0.27
Consensus pattern (18 bp):
AATTAACCGAATTACCCG
Found at i:15065141 original size:20 final size:20
Alignment explanation
Indices: 15065116--15065153 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
15065106 TATTTACTTT
15065116 TTTACTTTTTATAATTCATA
1 TTTACTTTTTATAATTCATA
15065136 TTTACTTTTTATAATTCA
1 TTTACTTTTTATAATTCA
15065154 AGTAAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTACTTTTTATAATTCATA
Found at i:15066675 original size:15 final size:16
Alignment explanation
Indices: 15066645--15066679 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
15066635 TTTATATTTA
15066645 AAATTTAAATTTTTTT
1 AAATTTAAATTTTTTT
15066661 AAATTTAAA-TTTTTT
1 AAATTTAAATTTTTTT
15066676 AAAT
1 AAAT
15066680 ATTTTTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
AAATTTAAATTTTTTT
Found at i:15066683 original size:17 final size:16
Alignment explanation
Indices: 15066641--15066683 Score: 68
Period size: 16 Copynumber: 2.6 Consensus size: 16
15066631 CATTTTTATA
15066641 TTTAAAATTTAAATTT
1 TTTAAAATTTAAATTT
*
15066657 TTTTAAATTTAAATTT
1 TTTAAAATTTAAATTT
15066673 TTTAAATATTT
1 TTTAAA-ATTT
15066684 TTCATAATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 20 0.83
17 4 0.17
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TTTAAAATTTAAATTT
Found at i:15069790 original size:18 final size:19
Alignment explanation
Indices: 15069767--15069804 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
15069757 GTTTTCCAGG
15069767 TTAGGATTTTTAGGG-TTT
1 TTAGGATTTTTAGGGATTT
15069785 TTAGGATTTTTAGGGATTT
1 TTAGGATTTTTAGGGATTT
15069804 T
1 T
15069805 GGAGAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.18, C:0.00, G:0.26, T:0.55
Consensus pattern (19 bp):
TTAGGATTTTTAGGGATTT
Found at i:15069795 original size:10 final size:9
Alignment explanation
Indices: 15069767--15069804 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
15069757 GTTTTCCAGG
15069767 TTAGGATTT
1 TTAGGATTT
*
15069776 TTAGGGTTT
1 TTAGGATTT
15069785 TTAGGATTT
1 TTAGGATTT
15069794 TTAGGGATTT
1 TTA-GGATTT
15069804 T
1 T
15069805 GGAGAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
9 19 0.73
10 7 0.27
ACGTcount: A:0.18, C:0.00, G:0.26, T:0.55
Consensus pattern (9 bp):
TTAGGATTT
Found at i:15070162 original size:126 final size:125
Alignment explanation
Indices: 15069920--15070488 Score: 782
Period size: 126 Copynumber: 4.5 Consensus size: 125
15069910 GATAAAATCA
* * * * * *
15069920 AAGCAGGATGATTTATCAGAAGGATTTTTGAAGTCGCGCCCACGTGTACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * *
15069985 AAGTCCTGGAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAACGTTTC
66 AGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
** * *
15070045 AAGCAAAATGCTTTATGAGAAGAATTTGTGAAATCGTGCCCTCGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * *
15070110 TGGTACTGGAAGAAATAATTTCAAGTTGACGTTTCTGAGCAAATAGTTTAAAAAAACGCTTC
66 AGGTCCTGGAA-AAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTAT-AAAAAACGCTTC
* * * *
15070172 AAGTAGGATGCTTTATGAGAAGGATTTGTGAAATCACGCCCACGTGGACGCGCTTTTGCTATAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * *
15070237 AGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAACAGCGCTGC
66 AGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAA-AACGCTTC
* *
15070298 AAGCAGGATGCTATT-TGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGTTTTTGCTACAG
1 AAGCAGGATGCT-TTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAG
* * * *
15070362 TAGGTCCTGGAAAAATAATTTCGACTTGATGATTCTGAGCAAATAGTAT-AAAATCGCTTC
65 TAGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * *
15070422 TAGCAGGATGCTGTATGAGAAGAATTTGTGAAATCGAGCCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
15070487 AG
66 AG
15070489 CATGTTTGGG
Statistics
Matches: 391, Mismatches: 48, Indels: 11
0.87 0.11 0.02
Matches are distributed among these distances:
123 1 0.00
124 66 0.17
125 70 0.18
126 176 0.45
127 78 0.20
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (125 bp):
AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
AGGTCCTGGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
Found at i:15073717 original size:22 final size:22
Alignment explanation
Indices: 15073622--15074782 Score: 796
Period size: 22 Copynumber: 53.6 Consensus size: 22
15073612 TCAAATTATA
15073622 TTTAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
15073643 TTTAAGTTAAGTG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * * *
15073664 TTTTATTTAAGTG-TTACGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
15073685 TTAAAGTTAAGGGTTTAGGGTA
1 TTTAAGTTAAGGGTTTAGGGTT
* **
15073707 TTTAATTTAAGGG-TTACAGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
15073728 TTTAAGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
15073750 TTAAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
15073771 TTTTAGTTAAGGGTTTATGATT
1 TTTAAGTTAAGGGTTTAGGGTT
*
15073793 TTTAAGCTAAGGGTTTAGGG-T
1 TTTAAGTTAAGGGTTTAGGGTT
* * * *
15073814 TTCAAGGTTTTAGGATTTAAGGTT
1 TTTAA-G-TTAAGGGTTTAGGGTT
* ***
15073838 TTTAATTTAAGGGTTTACAATT
1 TTTAAGTTAAGGGTTTAGGGTT
15073860 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
15073882 TTAAAGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
15073903 TTTAATTTAAGGG-TTA-GG-A
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
15073922 ATT---TTAA-GGATAAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
15073940 TTAAAGTTAAGGGCTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
15073962 TTAAAGTTATGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
15073984 TTTAAGTTAAGGG-CTAGGATT
1 TTTAAGTTAAGGGTTTAGGGTT
* **
15074005 TTTAATTTAAGGGTTTATAG-T
1 TTTAAGTTAAGGGTTTAGGGTT
*
15074026 TTT-AG----GGTTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * * *
15074043 TTTAATTTAAAGGTTTA-AGAT
1 TTTAAGTTAAGGGTTTAGGGTT
*
15074064 TTTAAGTTAAAGGTTTAGGG-T
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
15074085 TTTAGTGTTTTTTAAGTTAAGGGTTAGAGTT
1 TTTA-AG----TTAAG----GGTTTAGGGTT
* * *
15074116 TTTAATTTATGGATTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
15074138 TTATGATTTAA-GGTTT----TT
1 TT-TAAGTTAAGGGTTTAGGGTT
* ** **
15074156 AATTTAAG----GGTTTAGGATTT
1 --TTTAAGTTAAGGGTTTAGGGTT
*
15074176 TTTAAGTTAAGGGTTTAAGG-T
1 TTTAAGTTAAGGGTTTAGGGTT
* *
15074197 TTTAGGGTTTTAAGGTTTCTA--GTT
1 TTTA-AG--TTAAGGGTT-TAGGGTT
* * *
15074221 TTTAATTTAAAGGTTTAGCGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
15074243 TTTAAGTTAAGGGTTTAGGATT
1 TTTAAGTTAAGGGTTTAGGGTT
*
15074265 TTTATA-TTAAGGG-TTAGAGTT
1 TTTA-AGTTAAGGGTTTAGGGTT
15074286 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
15074308 TTTAAGTTAAGGGTTTATGATT
1 TTTAAGTTAAGGGTTTAGGGTT
*
15074330 TTTAAGTTAAGGTTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
15074352 TTTAATTTAAGTGTTTAAGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
15074374 TTAAAGTTAAGGG-TTAGAGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
15074395 TTTAAGTTAAGGGTTTAGAGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
15074417 TTTAAGTTAAGGG-TTAGCGTT
1 TTTAAGTTAAGGGTTTAGGGTT
15074438 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
**
15074460 TTTAAGTTAAGGGTTTATAGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
15074482 TTTAATTTAAGGGTTAATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
15074504 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
15074526 TTTAAGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
15074548 TTAAAGTTAAGGGTTTAGGATT
1 TTTAAGTTAAGGGTTTAGGGTT
* *
15074570 TTTAATTTAAGGATTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
** *
15074592 TTTAAGTTAATAGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
* * ** *
15074614 TTTAATTTATGAATATAGGG--
1 TTTAAGTTAAGGGTTTAGGGTT
***
15074634 -TT---TT-AGGGTTTAAAATT
1 TTTAAGTTAAGGGTTTAGGGTT
* * *
15074651 TTTAATTTATGGGTTTAGGGGT
1 TTTAAGTTAAGGGTTTAGGGTT
*
15074673 TTTAAGTTAAGGTTTTTAGGGTTTAAGGGT
1 TTTAAGTTAAGG-GTTTAGGG--T-----T
* **
15074703 TTTAATTTAAATGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
*
15074725 TTTAAGTTAAGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTAGGGTT
15074747 TTTAAGTTAAGGG-TTAGGGTTT
1 TTTAAGTTAAGGGTTTAGGG-TT
15074769 TTTAAGTTAAGGGT
1 TTTAAGTTAAGGGT
15074783 GTAGAAGCCC
Statistics
Matches: 886, Mismatches: 182, Indels: 142
0.73 0.15 0.12
Matches are distributed among these distances:
15 6 0.01
16 18 0.02
17 6 0.01
18 12 0.01
19 6 0.01
20 10 0.01
21 232 0.26
22 513 0.58
23 25 0.03
24 18 0.02
25 2 0.00
26 8 0.01
27 1 0.00
29 7 0.01
30 17 0.02
31 5 0.01
ACGTcount: A:0.26, C:0.01, G:0.26, T:0.47
Consensus pattern (22 bp):
TTTAAGTTAAGGGTTTAGGGTT
Found at i:15073717 original size:43 final size:43
Alignment explanation
Indices: 15073622--15074782 Score: 806
Period size: 43 Copynumber: 26.8 Consensus size: 43
15073612 TCAAATTATA
*
15073622 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGTG-TTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * * * *
15073664 TTTTATTTAAGTGTTACGGTTTTAAAGTTAAGGGTTTAGGGTA
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* ** *
15073707 TTTAATTTAAGGGTTACAGTTTTTAAGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * *
15073750 TTAAAGTTAAGGGTTAGGGTTTTTTAGTTAAGGGTTTATGATT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * * *
15073793 TTTAAGCTAAGGGTTTAGGG-TTTCAAGGTTTTAGGATTTAAGGTT
1 TTTAAGTTAAGGG-TTAGGGTTTTTAA-G-TTAAGGGTTTAGGGTT
* ***
15073838 TTTAATTTAAGGGTTTACAATTTTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * *
15073882 TTAAAGTTAAGGGTTAGGGTTTTTAATTTAAGGG-TTA-GG-A
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * * *
15073922 ATT---TTAAGGATAAGGGTTTTAAAGTTAAGGGCTTAGGGTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * *
15073962 TTAAAGTTATGGGTTTAGGGTTTTTAAGTTAAGGG-CTAGGATT
1 TTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* ** *
15074005 TTTAATTTAAGGGTTTATAG-TTTT-AG----GGTTTTAGGGTT
1 TTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * ** * *
15074043 TTTAATTTAAAGGTTTAAGATTTTAAGTTAAAGGTTTAGGGTTTTAGTGTTT
1 TTTAAGTT-AAGGGTT-AGGGTTT---TT-AA-GTTAAGGG-TTTAG-GGTT
* * * *
15074095 TTTAAGTTAAGGGTTAGAGTTTTTAATTTATGGATTTAGGG-T
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
** * * *
15074137 TTT-A--T--GATTTAAGGTTTTTAATTTAAGGGTTTAGGATTT
1 TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGG-GTT
* * *
15074176 TTTAAGTTAAGGGTTTAAGG-TTTTAGGGTTTTAAGGTTTCTA--GTT
1 TTTAAGTTAAGGG-TTAGGGTTTTTA-AG--TTAAGGGTT-TAGGGTT
* * * *
15074221 TTTAATTTAAAGGTTTAGCGTTTTTAAGTTAAGGGTTTAGGATT
1 TTTAAGTT-AAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
*
15074265 TTTATA-TTAAGGGTTAGAGTTTTTAAGTTAAGGGTTTAGGGTT
1 TTTA-AGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * *
15074308 TTTAAGTTAAGGGTTTATGATTTTTAAGTTAAGGTTTTAGGGTT
1 TTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * * *
15074352 TTTAATTTAAGTGTTTAAGGTTTTAAAGTTAAGGG-TTAGAGTT
1 TTTAAGTTAAG-GGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* *
15074395 TTTAAGTTAAGGGTTTAGAGTTTTTAAGTTAAGGG-TTAGCGTT
1 TTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
**
15074438 TTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAGGGTTTATAGTT
1 TTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* *
15074482 TTTAATTTAAGGGTTAATGGTTTTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTT-AGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * *
15074526 TTTAAGTTAAGGGTTTATGGTTTTAAAGTTAAGGGTTTAGGATT
1 TTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * ** *
15074570 TTTAATTTAAGGATTTAGGGTTTTTAAGTTAATAGTTTATGGTT
1 TTTAAGTTAAGG-GTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * ** ***
15074614 TTTAATTTATGAATATAGGG---TT---TT-AGGGTTTAAAATT
1 TTTAAGTTAAGGGT-TAGGGTTTTTAAGTTAAGGGTTTAGGGTT
* * * *
15074651 TTTAATTTATGGGTTTAGGGGTTTTAAGTTAAGGTTTTTAGGGTTTAAGGGT
1 TTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGG-GTTTAGGG--T-----T
* * * *
15074703 TTTAATTTAAATGTTTAGGGTTTTTAAGTTAAGGGTTTATGGTT
1 TTTAAGTT-AAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
15074747 TTTAAGTTAAGGGTTAGGGTTTTTTAAGTTAAGGGT
1 TTTAAGTTAAGGGTTAGGG-TTTTTAAGTTAAGGGT
15074783 GTAGAAGCCC
Statistics
Matches: 886, Mismatches: 161, Indels: 142
0.75 0.14 0.12
Matches are distributed among these distances:
37 74 0.08
38 22 0.02
39 13 0.01
40 7 0.01
41 7 0.01
42 44 0.05
43 282 0.32
44 280 0.32
45 61 0.07
46 17 0.02
47 11 0.01
48 2 0.00
49 1 0.00
50 8 0.01
51 17 0.02
52 38 0.04
53 2 0.00
ACGTcount: A:0.26, C:0.01, G:0.26, T:0.47
Consensus pattern (43 bp):
TTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTT
Found at i:15073841 original size:16 final size:15
Alignment explanation
Indices: 15073800--15073839 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
15073790 ATTTTTAAGC
* *
15073800 TAAGGGTTTAGGGTT
1 TAAGGTTTTAGGATT
15073815 TCAAGGTTTTAGGATT
1 T-AAGGTTTTAGGATT
15073831 TAAGGTTTT
1 TAAGGTTTT
15073840 TAATTTAAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.23, C:0.03, G:0.30, T:0.45
Consensus pattern (15 bp):
TAAGGTTTTAGGATT
Found at i:15073976 original size:37 final size:36
Alignment explanation
Indices: 15073894--15073977 Score: 89
Period size: 37 Copynumber: 2.3 Consensus size: 36
15073884 AAAGTTAAGG
* * *
15073894 GTTAGGGTTTTTAATTTAAGGGTTAGGAATTTTAAG
1 GTTAGGGTTTTAAAGTTAAGGGTTAGGAATTTTAAA
* *
15073930 GATAAGGGTTTTAAAGTTAAGGGCTTAGG-GTTTTAAA
1 G-TTAGGGTTTTAAAGTTAAGGG-TTAGGAATTTTAAA
15073967 GTTATGGGTTT
1 GTTA-GGGTTT
15073978 AGGGTTTTTA
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
36 3 0.08
37 31 0.79
38 5 0.13
ACGTcount: A:0.27, C:0.01, G:0.30, T:0.42
Consensus pattern (36 bp):
GTTAGGGTTTTAAAGTTAAGGGTTAGGAATTTTAAA
Found at i:15074040 original size:59 final size:59
Alignment explanation
Indices: 15073975--15074214 Score: 189
Period size: 60 Copynumber: 4.2 Consensus size: 59
15073965 AAGTTATGGG
*
15073975 TTTAGGGTTTTTAAGTTAAGGGCTAGGA-TTTTTAATTTAAGGGTTTATAGTTTTAGGGT
1 TTTAGGGTTTTTAAGTTAAGGGTTAGGAGTTTTTAATTTAAGGGTTTA-AGTTTTAGGGT
* * * * *
15074034 TTTAGGGTTTTTAATTTAAAGGTTTA--AG-----ATTTTAA--GTTAAAGGTTTAGGGT
1 TTTAGGGTTTTTAAGTT-AAGGGTTAGGAGTTTTTAATTTAAGGGTTTAAGTTTTAGGGT
* * * * * *
15074085 TTTAGTGTTTTTTAAGTTAAGGGTTA-GAGTTTTTAATTTATGGATTTAGGGTTTTA-TGA
1 TTTAG-GGTTTTTAAGTTAAGGGTTAGGAGTTTTTAATTTAAGGGTTTA-AGTTTTAGGGT
* * * *
15074144 TTTAAGGTTTTTAATTTAAGGGTTTAGGATTTTTTAAGTTAAGGGTTTAAGGTTTTAGGGT
1 TTTAGGGTTTTTAAGTTAAGGG-TTAGGAGTTTTTAATTTAAGGGTTTAA-GTTTTAGGGT
*
15074205 TTTAAGGTTT
1 TTTAGGGTTT
15074215 CTAGTTTTTA
Statistics
Matches: 138, Mismatches: 27, Indels: 30
0.71 0.14 0.15
Matches are distributed among these distances:
51 22 0.16
52 16 0.12
54 6 0.04
57 5 0.04
58 16 0.12
59 27 0.20
60 35 0.25
61 11 0.08
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (59 bp):
TTTAGGGTTTTTAAGTTAAGGGTTAGGAGTTTTTAATTTAAGGGTTTAAGTTTTAGGGT
Found at i:15074081 original size:51 final size:52
Alignment explanation
Indices: 15074026--15074140 Score: 137
Period size: 52 Copynumber: 2.2 Consensus size: 52
15074016 GGTTTATAGT
* *
15074026 TTTAGGGTTTTAG-GGTTTTTAATTTAAAGGTTTA-AGATTTTAAGTTAAAGG-
1 TTTAGGGTTTTAGTGGTTTTTAAGTT-AAGGGTTAGAGATTTTAA-TTAAAGGA
* * * *
15074077 TTTAGGGTTTTAGTGTTTTTTAAGTTAAGGGTTAGAGTTTTTAATTTATGGA
1 TTTAGGGTTTTAGTGGTTTTTAAGTTAAGGGTTAGAGATTTTAATTAAAGGA
15074129 TTTAGGGTTTTA
1 TTTAGGGTTTTA
15074141 TGATTTAAGG
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
51 25 0.45
52 30 0.55
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.50
Consensus pattern (52 bp):
TTTAGGGTTTTAGTGGTTTTTAAGTTAAGGGTTAGAGATTTTAATTAAAGGA
Found at i:15074133 original size:52 final size:51
Alignment explanation
Indices: 15074026--15074207 Score: 136
Period size: 52 Copynumber: 3.4 Consensus size: 51
15074016 GGTTTATAGT
* *
15074026 TTTAGGGTTTTAGGGTTTTTAATTTAAAGGTTTAAGATTTTAAGTTAAAGG
1 TTTAGGGTTTTAGGGTTTTTAAGTTAAAGGGTTAAGATTTTAAGTTAAAGG
* * * *
15074077 TTTAGGGTTTTAGTGTTTTTTAAGTT-AAGGGTTAGAGTTTTTAA-TTTATGG
1 TTTAGGGTTTTAG-GGTTTTTAAGTTAAAGGGTTA-AGATTTTAAGTTAAAGG
* * *
15074128 ATTTAGGGTTTTATGATTTAAGGTTTTTAA-TTTAAGGGTTTAGGATTTTTTAAGTTAAGGG
1 -TTTAGGGTTTTA-G------GGTTTTTAAGTTAAAGGG-TTAAGA--TTTTAAGTTAAAGG
*
15074189 TTTAAGGTTTTAGGGTTTT
1 TTTAGGGTTTTAGGGTTTT
15074208 AAGGTTTCTA
Statistics
Matches: 104, Mismatches: 13, Indels: 26
0.73 0.09 0.18
Matches are distributed among these distances:
51 25 0.24
52 30 0.29
53 7 0.07
57 2 0.02
58 14 0.13
59 4 0.04
60 17 0.16
61 5 0.05
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.51
Consensus pattern (51 bp):
TTTAGGGTTTTAGGGTTTTTAAGTTAAAGGGTTAAGATTTTAAGTTAAAGG
Found at i:15074142 original size:16 final size:15
Alignment explanation
Indices: 15074121--15074175 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
15074111 GAGTTTTTAA
*
15074121 TTTATGGATTTAGGGT
1 TTTAT-GATTTAAGGT
15074137 TTTATGATTTAAGGT
1 TTTATGATTTAAGGT
* *
15074152 TTT-TAATTTAAGGG
1 TTTATGATTTAAGGT
*
15074166 TTTAGGATTT
1 TTTATGATTT
15074176 TTTAAGTTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
14 12 0.36
15 16 0.48
16 5 0.15
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.53
Consensus pattern (15 bp):
TTTATGATTTAAGGT
Found at i:15074162 original size:14 final size:15
Alignment explanation
Indices: 15074128--15074169 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
15074118 TAATTTATGG
* *
15074128 ATTTAGGGTTTTATG
1 ATTTAAGGTTTTATA
15074143 ATTTAAGGTTTT-TA
1 ATTTAAGGTTTTATA
*
15074157 ATTTAAGGGTTTA
1 ATTTAAGGTTTTA
15074170 GGATTTTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.26, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
ATTTAAGGTTTTATA
Found at i:15074186 original size:37 final size:37
Alignment explanation
Indices: 15074113--15074187 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
15074103 AAGGGTTAGA
* * * *
15074113 GTTTTTAATTTATGGATTTAGGGTTTTATGATTTAAG
1 GTTTTTAATTTAAGGATTTAGGATTTTATAAGTTAAG
* *
15074150 GTTTTTAATTTAAGGGTTTAGGATTTTTTAAGTTAAG
1 GTTTTTAATTTAAGGATTTAGGATTTTATAAGTTAAG
15074187 G
1 G
15074188 GTTTAAGGTT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.25, C:0.00, G:0.23, T:0.52
Consensus pattern (37 bp):
GTTTTTAATTTAAGGATTTAGGATTTTATAAGTTAAG
Found at i:15074225 original size:16 final size:16
Alignment explanation
Indices: 15074185--15074214 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15074175 TTTTAAGTTA
15074185 AGGG-TTTAAGGTTTT
1 AGGGTTTTAAGGTTTT
15074200 AGGGTTTTAAGGTTT
1 AGGGTTTTAAGGTTT
15074215 CTAGTTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.47
Consensus pattern (16 bp):
AGGGTTTTAAGGTTTT
Found at i:15074690 original size:52 final size:52
Alignment explanation
Indices: 15074634--15074736 Score: 143
Period size: 52 Copynumber: 2.0 Consensus size: 52
15074624 GAATATAGGG
* **
15074634 TTTTAGGGTTTAAAATTTTTAATTTATGGGTTTAGGGGTTTTAAGTTAAGGT
1 TTTTAGGGTTTAAAAGTTTTAATTTAAAGGTTTAGGGGTTTTAAGTTAAGGT
** * *
15074686 TTTTAGGGTTTAAGGGTTTTAATTTAAATGTTTAGGGTTTTTAAGTTAAGG
1 TTTTAGGGTTTAAAAGTTTTAATTTAAAGGTTTAGGGGTTTTAAGTTAAGG
15074737 GTTTATGGTT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (52 bp):
TTTTAGGGTTTAAAAGTTTTAATTTAAAGGTTTAGGGGTTTTAAGTTAAGGT
Found at i:15074695 original size:30 final size:29
Alignment explanation
Indices: 15074656--15074725 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 29
15074646 AAATTTTTAA
* * *
15074656 TTTATGGGTTTAGGGGTTTTAAGTTAAGGTT
1 TTTA-GGGTTTAAGGGTTTTAAGTTAA-ATG
*
15074687 TTTAGGGTTTAAGGGTTTTAATTTAAATG
1 TTTAGGGTTTAAGGGTTTTAAGTTAAATG
15074716 TTTAGGGTTT
1 TTTAGGGTTT
15074726 TTAAGTTAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 11 0.31
30 20 0.57
31 4 0.11
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (29 bp):
TTTAGGGTTTAAGGGTTTTAAGTTAAATG
Found at i:15076289 original size:9 final size:9
Alignment explanation
Indices: 15076277--15076359 Score: 57
Period size: 8 Copynumber: 9.1 Consensus size: 9
15076267 ATTTTATGAT
*
15076277 TTTTATCTA
1 TTTTATTTA
*
15076286 TTTTCCTTTA
1 TTTT-ATTTA
15076296 TTGTTA-TTA
1 TT-TTATTTA
15076305 TTTTATTTA
1 TTTTATTTA
*
15076314 TTTATTTTTA
1 TTT-TATTTA
*
15076324 CTTTATGTTCA
1 TTTTAT-TT-A
15076335 -TTTATTTA
1 TTTTATTTA
15076343 -TTTATTTA
1 TTTTATTTA
15076351 -TTTATTTA
1 TTTTATTTA
15076359 T
1 T
15076360 ATGTCCATTT
Statistics
Matches: 61, Mismatches: 6, Indels: 14
0.75 0.07 0.17
Matches are distributed among these distances:
8 20 0.33
9 19 0.31
10 19 0.31
11 3 0.05
ACGTcount: A:0.20, C:0.06, G:0.02, T:0.71
Consensus pattern (9 bp):
TTTTATTTA
Found at i:15076315 original size:4 final size:4
Alignment explanation
Indices: 15076306--15076401 Score: 81
Period size: 4 Copynumber: 23.8 Consensus size: 4
15076296 TTGTTATTAT
15076306 TTTA TTTA TTTA -TT- TTTA CTTTA TGTTCA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA T-TT-A TTTA TTTA TTTA TTTA TTTA
* * ** * *
15076355 TTTA TATG TCCA TTTT TTTA TGT- TTTA GTTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTT
15076402 GTTATTGTAT
Statistics
Matches: 74, Mismatches: 11, Indels: 14
0.75 0.11 0.14
Matches are distributed among these distances:
3 6 0.08
4 54 0.73
5 12 0.16
6 2 0.03
ACGTcount: A:0.21, C:0.04, G:0.04, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:15076369 original size:32 final size:32
Alignment explanation
Indices: 15076306--15076391 Score: 99
Period size: 32 Copynumber: 2.8 Consensus size: 32
15076296 TTGTTATTAT
* *
15076306 TTTATTTATTTA-TT-TTTACTT-TATGTTCA
1 TTTATTTATTTATTTATTTATTTATATGTCCA
15076335 TTTATTTATTTATTTATTTATTTATATGTCCA
1 TTTATTTATTTATTTATTTATTTATATGTCCA
* *
15076367 TTTTTTTATGT-TTTAGTTTATTTAT
1 TTTATTTATTTATTTA-TTTATTTAT
15076392 TTATTTATTT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
29 12 0.24
30 2 0.04
31 10 0.20
32 25 0.51
ACGTcount: A:0.21, C:0.05, G:0.05, T:0.70
Consensus pattern (32 bp):
TTTATTTATTTATTTATTTATTTATATGTCCA
Found at i:15076925 original size:109 final size:109
Alignment explanation
Indices: 15076548--15076934 Score: 495
Period size: 109 Copynumber: 3.5 Consensus size: 109
15076538 CTAAATGAGG
* * *
15076548 CAATATTTAGCTTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGT
1 CAATATTTTGCGTTTGGAAATTCAAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGT
* * *
15076613 TCAACCAAATGGCTTAATATTCTTTTAAAAATTTTAAAATAAGA
66 TCAACCAAATGGCTAAATATCCTTTTAAAAATTTCAAAATAAGA
* * *
15076657 CAATGTTTTGCGTTTGGATATTCGAAGAAAACATGCCCTAAGGTGCTGGGTGTTGATTTTTCGTC
1 CAATATTTTGCGTTTGGAAATTC-AAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTC-TC
* * **
15076722 GTTCAACCAAATGACTTAAATATACCTTTAAAAAAAAATCAAAATAAGA
64 GTTCAACCAAATGGC-TAAATAT-CCTTT-TAAAAATTTCAAAATAAGA
* * * * *
15076771 CAATGTTTTGTGTTTGGAAATTCGAGAAAACATGCCTTAAGGTGCTGGGTGTCGATTTTTCTCAT
1 CAATATTTTGCGTTTGGAAATTCAAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGT
* *
15076836 TCAACCAAATGGCTAAATATCCTTTTAAAAATTTCGAAGTAAGA
66 TCAACCAAATGGCTAAATATCCTTTTAAAAATTTCAAAATAAGA
* * * * * *
15076880 TAATATTTTGCGTTTGGAAATTTAAGGAAACGTGCCCTAATGTGCTGGGTTTCGA
1 CAATATTTTGCGTTTGGAAATTCAAGAAAACATGCCCTAAGGTGCTGGGTGTCGA
15076935 NNNNNNNNNN
Statistics
Matches: 238, Mismatches: 35, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
109 78 0.33
110 41 0.17
111 23 0.10
112 21 0.09
113 39 0.16
114 36 0.15
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.34
Consensus pattern (109 bp):
CAATATTTTGCGTTTGGAAATTCAAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGT
TCAACCAAATGGCTAAATATCCTTTTAAAAATTTCAAAATAAGA
Found at i:15080419 original size:17 final size:17
Alignment explanation
Indices: 15080393--15080430 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
15080383 AGTCAAAATG
* *
15080393 AAAATGAAAAAAAATCA
1 AAAATAAAAAAAAAACA
15080410 AAAATAAAAAAAAAACA
1 AAAATAAAAAAAAAACA
15080427 AAAA
1 AAAA
15080431 GAAGAAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.84, C:0.05, G:0.03, T:0.08
Consensus pattern (17 bp):
AAAATAAAAAAAAAACA
Found at i:15080459 original size:24 final size:24
Alignment explanation
Indices: 15080364--15080459 Score: 63
Period size: 24 Copynumber: 4.0 Consensus size: 24
15080354 AAGGGAAGAA
* *
15080364 AAAGAAAAATCAAAATCAAAGTCAA-
1 AAAGAAAAA--AAAAACAAAATCAAG
* **
15080389 AATGAAAATGAAAA-AAAATCAA-
1 AAAGAAAAAAAAAACAAAATCAAG
* **
15080411 AAATAAAAAAAAAACAAAAAGAAG
1 AAAGAAAAAAAAAACAAAATCAAG
* *
15080435 AAAGAAGAAAAAATCAAAATCAAG
1 AAAGAAAAAAAAAACAAAATCAAG
15080459 A
1 A
15080460 TTAAAATGAA
Statistics
Matches: 53, Mismatches: 16, Indels: 5
0.72 0.22 0.07
Matches are distributed among these distances:
22 17 0.32
23 9 0.17
24 20 0.38
25 7 0.13
ACGTcount: A:0.74, C:0.07, G:0.09, T:0.09
Consensus pattern (24 bp):
AAAGAAAAAAAAAACAAAATCAAG
Found at i:15080497 original size:75 final size:72
Alignment explanation
Indices: 15080358--15080498 Score: 176
Period size: 75 Copynumber: 1.9 Consensus size: 72
15080348 TCAAAAAAGG
*
15080358 GAAGAAAAAGAAAAATCAAAATCAAAGTCAAAATGAAAATGAAAAAAAATCAAAAATAAAAAAAA
1 GAAGAAAAAGAAAAATCAAAATCAAAGTCAAAATGAAAATGAAAAAAAAACAAAAAT-AAAAAAA
15080423 AACAAAAA
65 AACAAAAA
* * * *
15080431 GAAGAAAGAAGAAAAAATCAAAATC-AAGATTAAAATGAAAATGAGAAAAAGAAAGAAGAATGAA
1 GAAGAAA-AAG-AAAAATCAAAATCAAAG-TCAAAATGAAAATGA-AAAAA-AAACAAAAATAAA
15080495 AAAA
61 AAAA
15080499 GAGAAATCTA
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
73 7 0.12
74 6 0.10
75 27 0.47
76 11 0.19
77 7 0.12
ACGTcount: A:0.72, C:0.05, G:0.13, T:0.10
Consensus pattern (72 bp):
GAAGAAAAAGAAAAATCAAAATCAAAGTCAAAATGAAAATGAAAAAAAAACAAAAATAAAAAAAA
ACAAAAA
Found at i:15081419 original size:7 final size:7
Alignment explanation
Indices: 15081402--15081445 Score: 67
Period size: 7 Copynumber: 6.7 Consensus size: 7
15081392 TTGAGCAAAA
15081402 AAAAATG
1 AAAAATG
15081409 -AAAATG
1 AAAAATG
15081415 AAAAA-G
1 AAAAATG
15081421 -AAAATG
1 AAAAATG
15081427 AAAAATG
1 AAAAATG
15081434 AAAAATG
1 AAAAATG
15081441 AAAAA
1 AAAAA
15081446 GTAAAAATAG
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
5 4 0.12
6 8 0.24
7 22 0.65
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.11
Consensus pattern (7 bp):
AAAAATG
Found at i:15081424 original size:5 final size:6
Alignment explanation
Indices: 15081403--15081444 Score: 57
Period size: 6 Copynumber: 6.7 Consensus size: 6
15081393 TGAGCAAAAA
*
15081403 AAAATG AAAATG AAAAAG AAAATG AAAAATG AAAAATG AAAA
1 AAAATG AAAATG AAAATG AAAATG -AAAATG -AAAATG AAAA
15081445 AGTAAAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
6 20 0.61
7 13 0.39
ACGTcount: A:0.74, C:0.00, G:0.14, T:0.12
Consensus pattern (6 bp):
AAAATG
Found at i:15081430 original size:26 final size:27
Alignment explanation
Indices: 15081402--15081451 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
15081392 TTGAGCAAAA
15081402 AAAAATG-AAAATGAAAAAG-AAAATG
1 AAAAATGAAAAATGAAAAAGTAAAATG
15081427 AAAAATGAAAAATGAAAAAGTAAAA
1 AAAAATGAAAAATGAAAAAGTAAAA
15081452 ATAGAGAGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 7 0.30
26 12 0.52
27 4 0.17
ACGTcount: A:0.74, C:0.00, G:0.14, T:0.12
Consensus pattern (27 bp):
AAAAATGAAAAATGAAAAAGTAAAATG
Found at i:15081451 original size:14 final size:14
Alignment explanation
Indices: 15081409--15081453 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
15081399 AAAAAAAATG
15081409 AAAATGAAAAAG--
1 AAAATGAAAAAGTA
15081421 AAAATGAAAAA-TGA
1 AAAATGAAAAAGT-A
15081435 AAAATGAAAAAGTA
1 AAAATGAAAAAGTA
15081449 AAAAT
1 AAAAT
15081454 AGAGAGGCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
12 11 0.38
14 17 0.59
15 1 0.03
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (14 bp):
AAAATGAAAAAGTA
Found at i:15083055 original size:86 final size:86
Alignment explanation
Indices: 15082679--15083544 Score: 1030
Period size: 86 Copynumber: 10.0 Consensus size: 86
15082669 CAGATTAGTG
* * * *
15082679 AAGATAGCAGATCTTGCCTTCCTGCGTTAACAGTGAAGTAGATCGAAAGCAAAGCCTTGCCTCCA
1 AAGA-AGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
*
15082744 TCGATTGCAGTGGAGCTGGTT-
65 TCGGTTGCAGTGGAGCTGGTTA
**
15082765 -A-AAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATAAAAAACAAAGCCTTGCCTCCAT
1 AAGAAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCAT
*
15082828 CGGTTGTAGTGGAGCTGGTTA
66 CGGTTGCAGTGGAGCTGGTTA
* *
15082849 AAGATAGCAGATCTTGCCTTCCTGCGTTAACAACGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
1 AAGA-AGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
15082914 TCGGTTGCAGTGGAGCTGGTTA
65 TCGGTTGCAGTGGAGCTGGTTA
* * * *
15082936 AAGATAACAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGACCGAAAACAAA-CATTGCCTCTC
1 AAGA-AGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTC-C
* * *
15083000 -TCTGTTGTAGTGGAGCTGGTTG
64 ATCGGTTGCAGTGGAGCTGGTTA
* * * * *
15083022 AAGACACCAGATCCTGCCTTCCTGCCTTGACAGCGAAGCAGATCGAAGATACAAA-CCTTACCTC
1 AAGA-AGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAA-A-ACAAAGCCTTGCCTC
* *
15083086 TC-TCGGTTGTAGTGGAGCTGGTTG
63 -CATCGGTTGCAGTGGAGCTGGTTA
* * * * * *
15083110 AAGACAACAGATCTTGCATTCCTGCCTTGACAGCGAAGCAGATCGAAGATGC-AAGCCTTGCCTT
1 AAGA-AGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAA-A-ACAAAGCCTTGCCTC
* *
15083174 CATTGGTTGCAGTGGAGCTGGTCA
63 CATCGGTTGCAGTGGAGCTGGTTA
* * **
15083198 AAGAAGTAGATCTTGCATTCCTGCATTAACAGCGAAGCAGATAAAAAACAAAGCCTTGCCTCCAT
1 AAGAAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCAT
* * *
15083263 TGGTTGCAGTGAAGCTGGTCA
66 CGGTTGCAGTGGAGCTGGTTA
* * * *
15083284 AAGAAGCAGATCTTGCATTCCTGCATTAATAGCGAAGCAGATCAAAAACAAAGCATTGCCTCCAT
1 AAGAAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCAT
*
15083349 CGGTTGTAGTGGAGCTGGTTA
66 CGGTTGCAGTGGAGCTGGTTA
* *
15083370 AAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCATTGCCTCTA
1 AAGA-AGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
* * *
15083435 TCGGTTGCGGTGGAGCTGATCA
65 TCGGTTGCAGTGGAGCTGGTTA
** * * * * *
15083457 AAGAAGCAGATCTTGTATTCCTGCGTTAACAGCGAAGCAGATCAAAAACAAAGTCTTACCTCTAT
1 AAGAAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCAT
* *
15083522 CGATTACAGTGGAG-TGGGTTA
66 CGGTTGCAGTGGAGCT-GGTTA
15083543 AA
1 AA
15083545 ATAAAAGATC
Statistics
Matches: 692, Mismatches: 76, Indels: 24
0.87 0.10 0.03
Matches are distributed among these distances:
83 73 0.11
84 1 0.00
85 4 0.01
86 256 0.37
87 246 0.36
88 112 0.16
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.24
Consensus pattern (86 bp):
AAGAAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCAT
CGGTTGCAGTGGAGCTGGTTA
Found at i:15083066 original size:173 final size:173
Alignment explanation
Indices: 15082679--15083509 Score: 1077
Period size: 173 Copynumber: 4.8 Consensus size: 173
15082669 CAGATTAGTG
* * * *
15082679 AAGATAGCAGATCTTGCCTTCCTGCGTTAACAGTGAAGTAGATCGAAAGCAAAGCCTTGCCTCCA
1 AAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
* * *
15082744 TCGATTGCAGTGGAGCTGGTTAAAG---CAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATA
66 TCGGTTGCAGTGGAGCTGGTTAAAGAAACAGATCTTGCATTCCTGCATTAACAGCGAAGCAGATC
*
15082806 AAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTA
131 AAAAACAAAGCATTGCCTCCATCGGTTGTAGTGGAGCTGGTTA
* *
15082849 AAGATAGCAGATCTTGCCTTCCTGCGTTAACAACGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
1 AAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
* * *
15082914 TCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGAC
66 TCGGTTGCAGTGGAGCTGGTTAAAGA-AACAGATCTTGCATTCCTGCATTAACAGCGAAGCAGAT
* * *
15082979 CGAAAACAAA-CATTGCCTCTC-TCTGTTGTAGTGGAGCTGGTTG
130 CAAAAACAAAGCATTGCCTC-CATCGGTTGTAGTGGAGCTGGTTA
* * * * * *
15083022 AAGACACCAGATCCTGCCTTCCTGCCTTGACAGCGAAGCAGATCGAAGATACAAA-CCTTACCTC
1 AAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAA-A-ACAAAGCCTTGCCTC
* * * *
15083086 TC-TCGGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCATTCCTGCCTTGACAGCGAAGCA
64 -CATCGGTTGCAGTGGAGCTGGTTAAAGA-AACAGATCTTGCATTCCTGCATTAACAGCGAAGCA
** * * * * *
15083150 GATCGAAGATGC-AAGCCTTGCCTTCATTGGTTGCAGTGGAGCTGGTCA
127 GATC-AA-AAACAAAGCATTGCCTCCATCGGTTGTAGTGGAGCTGGTTA
* * **
15083198 AAGA-AGTAGATCTTGCATTCCTGCATTAACAGCGAAGCAGATAAAAAACAAAGCCTTGCCTCCA
1 AAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
* * * * *
15083262 TTGGTTGCAGTGAAGCTGGTCAAAGAAGCAGATCTTGCATTCCTGCATTAATAGCGAAGCAGATC
66 TCGGTTGCAGTGGAGCTGGTTAAAGAAACAGATCTTGCATTCCTGCATTAACAGCGAAGCAGATC
15083327 AAAAACAAAGCATTGCCTCCATCGGTTGTAGTGGAGCTGGTTA
131 AAAAACAAAGCATTGCCTCCATCGGTTGTAGTGGAGCTGGTTA
* *
15083370 AAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCATTGCCTCTA
1 AAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
* * * * * *
15083435 TCGGTTGCGGTGGAGCTGATCAAAGAAGCAGATCTTGTATTCCTGCGTTAACAGCGAAGCAGATC
66 TCGGTTGCAGTGGAGCTGGTTAAAGAAACAGATCTTGCATTCCTGCATTAACAGCGAAGCAGATC
15083500 AAAAACAAAG
131 AAAAACAAAG
15083510 TCTTACCTCT
Statistics
Matches: 571, Mismatches: 74, Indels: 29
0.85 0.11 0.04
Matches are distributed among these distances:
170 85 0.15
171 2 0.00
172 37 0.06
173 232 0.41
174 141 0.25
175 44 0.08
176 30 0.05
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.24
Consensus pattern (173 bp):
AAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCA
TCGGTTGCAGTGGAGCTGGTTAAAGAAACAGATCTTGCATTCCTGCATTAACAGCGAAGCAGATC
AAAAACAAAGCATTGCCTCCATCGGTTGTAGTGGAGCTGGTTA
Found at i:15083329 original size:44 final size:44
Alignment explanation
Indices: 15083117--15083329 Score: 109
Period size: 43 Copynumber: 4.9 Consensus size: 44
15083107 TTGAAGACAA
* * * *
15083117 CAGATCTTGCATTCCTGCCTTGACAGCGAAGCAGATCGAAGATG
1 CAGATCTTGCATTCCTGCATTAACAGCGAAGCAGATCAAAGAAG
* * * * * * * * *
15083161 CA-AGCCTTGCCTTCATTG-GTT-GCAGTGGAGCTGGTCAAAGAAG
1 CAGA-TCTTGCATTC-CTGCATTAACAGCGAAGCAGATCAAAGAAG
* *
15083204 TAGATCTTGCATTCCTGCATTAACAGCGAAGCAGAT-AAA-AAA
1 CAGATCTTGCATTCCTGCATTAACAGCGAAGCAGATCAAAGAAG
* * * * * * * *
15083246 CAAAGCCTTGC-CTCCATTG-GTT-GCAGTGAAGCTGGTCAAAGAAG
1 CAGA-TCTTGCATTCC--TGCATTAACAGCGAAGCAGATCAAAGAAG
*
15083290 CAGATCTTGCATTCCTGCATTAATAGCGAAGCAGATCAAA
1 CAGATCTTGCATTCCTGCATTAACAGCGAAGCAGATCAAA
15083330 AACAAAGCAT
Statistics
Matches: 115, Mismatches: 41, Indels: 26
0.63 0.23 0.14
Matches are distributed among these distances:
42 21 0.18
43 47 0.41
44 45 0.39
45 2 0.02
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (44 bp):
CAGATCTTGCATTCCTGCATTAACAGCGAAGCAGATCAAAGAAG
Found at i:15083648 original size:87 final size:86
Alignment explanation
Indices: 15083549--15084282 Score: 442
Period size: 87 Copynumber: 8.4 Consensus size: 86
15083539 GTTAAAATAA
* * *
15083549 AAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCT-AAGGTTA
1 AAGATCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGAATCAGGTCTTATCTCCCTGAA-GTTA
15083613 CAGTGGAGTAGACCGAAGAATTT
65 CAGTGGAGTAGA-CGAAGAATTT
* * * * * * *
15083636 TAGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATTTTATCTCCTTG-AGA
1 AAGATCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGAA-TCAG-G-TCTTATCTCCCTGAAG-
* * * *
15083700 TTATAGCGGAGCAGATCGAAGACA-CT
62 TTACAGTGGAGTAGA-CGAAGA-ATTT
* ** ** * * *
15083726 ---ATCCTATCTCCCTGAAGTTACAGTGGAGCGGACTAAAATAAAGGATCTCATCTCTCTGAAGT
1 AAGATCTTATCTCCCTGAAGTTACAGTGGAGTAGA-TCGAAT-CAGG-TCTTATCTCCCTGAAGT
* * *
15083788 TACAGTAGAGTAGA--TAGCA--T
63 TACAGTGGAGTAGACGAAGAATTT
* * * * * * *
15083808 CAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCACCCTGAG
1 AAGATCTTATCTCCCTGAAGTTACAGTGGAGTAGATC---GAA--TCAGGTCTTATCTCCCTGAA
* * ***
15083873 GTTACAAT-G-G-AG-CGATTGAAACC
61 GTTACAGTGGAGTAGACGA-AGAATTT
* * * * * *
15083896 AGAGATCTTATCTCCCTG-AGATTACAGCGGAGTAGATTGAAGCTAGTAATCATATCTCTCTGAA
1 A-AGATCTTATCTCCCTGAAG-TTACAGTGGAGTAGATCGAATC-AG--GTCTTATCTCCCTGAA
* * ** **
15083960 GTTACAATGGAGTGGATTAA-AATAA
61 GTTACAGTGGAGTAGACGAAGAATTT
* * *
15083985 AAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAAGTTAC
1 AAGATCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGAATCAGGTCTTATCTCCCTGAAGTTAC
15084050 AGTGGAGTAGACCGAAGAATTT
66 AGTGGAGTAGA-CGAAGAATTT
* * * * * * *
15084072 GAGATCTTATCTCCCTG-AGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAG
1 AAGATCTTATCTCCCTGAAG-TTACAGTGGAGTAGATCGAATC-AG--GTCTTATCTCCCTGAAG
* ** **
15084136 TTACAGTGGAGTGGATTAA-AATAA
62 TTACAGTGGAGTAGACGAAGAATTT
* * * *
15084160 AAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTAC
1 AAGATCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGAATCAGGTCTTATCTCCCTGAAGTTAC
*
15084225 AATGGAGTAGACCGAAGAATTT
66 AGTGGAGTAGA-CGAAGAATTT
* * *
15084247 CAGATCTTATCTCCTTGAGGTTACAGTGGAGTAGAT
1 AAGATCTTATCTCCCTGAAGTTACAGTGGAGTAGAT
15084283 TGAAGCCAGA
Statistics
Matches: 485, Mismatches: 121, Indels: 82
0.70 0.18 0.12
Matches are distributed among these distances:
82 1 0.00
83 1 0.00
84 5 0.01
85 83 0.17
86 12 0.02
87 197 0.41
88 83 0.17
89 42 0.09
90 59 0.12
91 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (86 bp):
AAGATCTTATCTCCCTGAAGTTACAGTGGAGTAGATCGAATCAGGTCTTATCTCCCTGAAGTTAC
AGTGGAGTAGACGAAGAATTT
Found at i:15083754 original size:43 final size:44
Alignment explanation
Indices: 15083550--15084364 Score: 238
Period size: 44 Copynumber: 18.7 Consensus size: 44
15083540 TTAAAATAAA
* * * * * *
15083550 AGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCA-TCAG
1 AGATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACAG
* * * *
15083593 -G-TCTTATCTCCCT-AAGGTTACAGTGGAGTAGACCGAAGA-ATTTT
1 AGATCCTATCTCCCTGAA-GTTACAGTGGAGCAGATCGAAGACA---G
* * * *
15083637 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG
1 AGATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACAG
** * * *
15083681 AGATTTTATCTCCTTG-AGATTATAGCGGAGCAGATCGAAGACA-
1 AGATCCTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGACAG
** * * * * *
15083724 CTATCCTATCTCCCTGAAGTTACAGTGGAGCGGA-CTAAAATAA
1 AGATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACAG
* * * * * *
15083767 AGGAT-CTCATCTCTCTGAAGTTACAGTAGAGTAGATAGCA-TCAG
1 A-GATCCT-ATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACAG
* * * * *
15083811 -G-TCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGA-ATTTC
1 AGATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACA---G
* * * * *
15083855 AGATCTTATCACCCTGAGGTTACAATGGAGC-GATTGAA-ACCAG
1 AGATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGA-CAG
* * * *
15083898 AGATCTTATCTCCCTG-AGATTACAGCGGAGTAGATTGAAG-CTAG
1 AGATCCTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGAC-AG
* * * ** * * * *
15083942 TA-ATCATATCTCTCTGAAGTTACAATGGAGTGGAT-TAAAATAAA
1 -AGATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGA-CAG
* * * * * *
15083986 AGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCA-TCAG
1 AGATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACAG
* * *
15084029 -G-TCTTATCTCCCTGAAGTTACAGTGGAGTAGACCGAAGA-ATTTG
1 AGATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACA---G
* * * *
15084073 AGATCTTATCTCCCTG-AGATTACAGCGGAGTAGATTGAAG-CTAG
1 AGATCCTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGAC-AG
* ** * * * *
15084117 TA-ATCCTATCTCTCTGAAGTTACAGTGGAGTGGAT-TAAAATAAA
1 -AGATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGA-CAG
* * * * * *
15084161 AGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCA-TCAG
1 AGATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACAG
* * * * * *
15084204 -G-TCTTATCTCCCTGAGGTTACAATGGAGTAGACCGAAGA-ATTTC
1 AGATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACA---G
* * * * * *
15084248 AGATCTTATCTCCTTGAGGTTACAGTGGAGTAGATTGAAGCCAG
1 AGATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACAG
** ** * *
15084292 AGATATTATCTCCCTG-AGATTACAACGGAGTAGATTGAAG-CTAG
1 AGATCCTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGAC-AG
* * *
15084336 GGATCCTAACTCTCTGAAGTTACAGTGGA
1 AGATCCTATCTCCCTGAAGTTACAGTGGA
15084365 ATGGATTAAA
Statistics
Matches: 583, Mismatches: 130, Indels: 117
0.70 0.16 0.14
Matches are distributed among these distances:
40 2 0.00
41 122 0.21
42 11 0.02
43 61 0.10
44 240 0.41
45 22 0.04
46 121 0.21
47 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (44 bp):
AGATCCTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACAG
Found at i:15083961 original size:218 final size:218
Alignment explanation
Indices: 15083525--15084111 Score: 908
Period size: 218 Copynumber: 2.7 Consensus size: 218
15083515 CCTCTATCGA
*
15083525 TTACAGTGGAGTGGGTTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
1 TTACAGTGGAGTGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
* *
15083590 CAGGTCTTATCTCCCTAAGGTTACAGTGGAGTAGACCGAAGAATTTTAGATCTTATCTCCCTGAG
66 CAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
* * * * *
15083655 GTTACAGTGGAGCAGATTGAAGCCAGAGATTTTATCTCCTTGAGATTATAGCGGAGCAGATCGAA
131 GTTACAATGGAGCAGATTGAAACCAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAA
*
15083720 GACACTATCCTATCTCCCTGAAG
196 GACACTATCATATCTCCCTGAAG
* * * * *
15083743 TTACAGTGGAGCGGACTAAAATAAAGGATCTCATCTCTCTGAAGTTACAGTAGAGTAGATAGCAT
1 TTACAGTGGAGTGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
*
15083808 CAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCACCCTGAG
66 CAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
* *
15083873 GTTACAATGGAGC-GATTGAAACCAGAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAA
131 GTTACAATGGAGCAGATTGAAACCAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAA
* *
15083937 G-CTAGTAATCATATCTCTCTGAAG
196 GAC-ACT-ATCATATCTCCCTGAAG
*
15083961 TTACAATGGAGTGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
1 TTACAGTGGAGTGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
* *
15084026 CAGGTCTTATCTCCCTGAAGTTACAGTGGAGTAGACCGAAGAATTTGAGATCTTATCTCCCTGAG
66 CAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
* ** *
15084091 ATTACAGCGGAGTAGATTGAA
131 GTTACAATGGAGCAGATTGAA
15084112 GCTAGTAATC
Statistics
Matches: 334, Mismatches: 32, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
216 1 0.00
217 48 0.14
218 278 0.83
219 7 0.02
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (218 bp):
TTACAGTGGAGTGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
CAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAG
GTTACAATGGAGCAGATTGAAACCAGAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAA
GACACTATCATATCTCCCTGAAG
Found at i:15084009 original size:88 final size:88
Alignment explanation
Indices: 15083898--15084195 Score: 345
Period size: 88 Copynumber: 3.4 Consensus size: 88
15083888 TTGAAACCAG
*
15083898 AGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCATATCTCTCTGAAGTT
1 AGATCTTATCTCCCTGAGATTACAGCAGAGTAGATTGAAGCTAGTAATCATATCTCTCTGAAGTT
*
15083963 ACAATGGAGTGGATTAAAATAAA
66 ACAGTGGAGTGGATTAAAATAAA
* * * * * * * *
15083986 AGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC-AG--GTCTTATCTCCCTGAAGT
1 AGATCTTATCTCCCTGAGA-TTACAGCAGAGTAGATTGAAGCTAGTAATCATATCTCTCTGAAGT
* ** ***
15084047 TACAGTGGAGTAGACCGAAGAATTTG
65 TACAGTGGAGTGGA-TTAA-AATAAA
* *
15084073 AGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGTT
1 AGATCTTATCTCCCTGAGATTACAGCAGAGTAGATTGAAGCTAGTAATCATATCTCTCTGAAGTT
15084138 ACAGTGGAGTGGATTAAAATAAA
66 ACAGTGGAGTGGATTAAAATAAA
* *
15084161 AGATCTTATCTCTCTGA-AGTTACAGTAGAGTAGAT
1 AGATCTTATCTCCCTGAGA-TTACAGCAGAGTAGAT
15084196 CGCATCAGGT
Statistics
Matches: 168, Mismatches: 34, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
85 27 0.16
86 2 0.01
87 40 0.24
88 69 0.41
89 2 0.01
90 28 0.17
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.30
Consensus pattern (88 bp):
AGATCTTATCTCCCTGAGATTACAGCAGAGTAGATTGAAGCTAGTAATCATATCTCTCTGAAGTT
ACAGTGGAGTGGATTAAAATAAA
Found at i:15084095 original size:175 final size:175
Alignment explanation
Indices: 15083897--15084288 Score: 712
Period size: 175 Copynumber: 2.2 Consensus size: 175
15083887 ATTGAAACCA
15083897 GAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCATATCTCTCTGAAGT
1 GAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCATATCTCTCTGAAGT
15083962 TACAATGGAGTGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
66 TACAATGGAGTGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
*
15084027 AGGTCTTATCTCCCTGAAGTTACAGTGGAGTAGACCGAAGAATTT
131 AGGTCTTATCTCCCTGAAGTTACAATGGAGTAGACCGAAGAATTT
*
15084072 GAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCTCTGAAGT
1 GAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCATATCTCTCTGAAGT
*
15084137 TACAGTGGAGTGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
66 TACAATGGAGTGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
*
15084202 AGGTCTTATCTCCCTGAGGTTACAATGGAGTAGACCGAAGAATTT
131 AGGTCTTATCTCCCTGAAGTTACAATGGAGTAGACCGAAGAATTT
* * * *
15084247 CAGATCTTATCTCCTTGAGGTTACAGTGGAGTAGATTGAAGC
1 GAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGC
15084289 CAGAGATATT
Statistics
Matches: 209, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
175 209 1.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (175 bp):
GAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCATATCTCTCTGAAGT
TACAATGGAGTGGATTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATC
AGGTCTTATCTCCCTGAAGTTACAATGGAGTAGACCGAAGAATTT
Found at i:15084323 original size:131 final size:131
Alignment explanation
Indices: 15083769--15084326 Score: 447
Period size: 131 Copynumber: 4.3 Consensus size: 131
15083759 TAAAATAAAG
* * ** * * * *
15083769 GATCTCATCTCTCTGAAGTTACAGTAGAGTAGATAGCATCAGGTCTTATCTCCCTGAGGTTACAG
1 GATCTTATCTCCCTGAAGTTACAGCGGAGTAGATCGAATCAGATCTTATCTCCCTGAGGTTACAA
* * * * *
15083834 TGGAGTAGACCGAAGAATTTCAGATCTTATCACCCTGAGGTTACAATGGAG-CGATTGAAACCAG
66 TGGAGTAGACCGAAGAATTTCAGATCTTATCTCTCTGAAGTTACAGTGGAGTAGATTGAAACCAG
15083898 A
131 A
* * * * *
15083899 GATCTTATCTCCCTG-AGATTACAGCGGAGTAGATTGAAGCTAGTAATCATATCTCTCTGAAGTT
1 GATCTTATCTCCCTGAAG-TTACAGCGGAGTAGATCGAATC-AG--ATCTTATCTCCCTGAGGTT
* ** *** * * *
15083963 ACAATGGAGTGGA-TTAA-AATAAAAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCG-CA
62 ACAATGGAGTAGACCGAAGAATTTCAGATCTTATCTCTCTGAAGTTACAGTGGAGTAGATTGAAA
*
15084025 TCAG-
127 CCAGA
* * * *
15084029 G-TCTTATCTCCCTGAAGTTACAGTGGAGTAGACCGAAGAATTTGAGATCTTATCTCCCTGAGAT
1 GATCTTATCTCCCTGAAGTTACAGCGGAGTAGATC---GAA--TCAGATCTTATCTCCCTGAGGT
** ** * * * * *
15084093 TACAGCGGAGTAGATTGAAG-CTAGT-A-ATCCTATCTCTCTGAAGTTACAGTGGAGTGGATTAA
61 TACAATGGAGTAGACCGAAGAAT-TTCAGATCTTATCTCTCTGAAGTTACAGTGGAGTAGATTGA
** *
15084155 AATAAAA
125 AACCAGA
* ** * *
15084162 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAA
1 GATCTTATCTCCCTGAAGTTACAGCGGAGTAGATCGAATCAGATCTTATCTCCCTGAGGTTACAA
* *
15084227 TGGAGTAGACCGAAGAATTTCAGATCTTATCTC-CTTGAGGTTACAGTGGAGTAGATTGAAGCCA
66 TGGAGTAGACCGAAGAATTTCAGATCTTATCTCTC-TGAAGTTACAGTGGAGTAGATTGAAACCA
15084291 GA
130 GA
* *
15084293 GATATTATCTCCCTG-AGATTACAACGGAGTAGAT
1 GATCTTATCTCCCTGAAG-TTACAGCGGAGTAGAT
15084327 TGAAGCTAGG
Statistics
Matches: 329, Mismatches: 77, Indels: 43
0.73 0.17 0.10
Matches are distributed among these distances:
129 65 0.20
130 38 0.12
131 150 0.46
132 17 0.05
133 29 0.09
134 30 0.09
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (131 bp):
GATCTTATCTCCCTGAAGTTACAGCGGAGTAGATCGAATCAGATCTTATCTCCCTGAGGTTACAA
TGGAGTAGACCGAAGAATTTCAGATCTTATCTCTCTGAAGTTACAGTGGAGTAGATTGAAACCAG
A
Found at i:15084492 original size:98 final size:98
Alignment explanation
Indices: 15084338--15084514 Score: 275
Period size: 98 Copynumber: 1.8 Consensus size: 98
15084328 GAAGCTAGGG
* * *
15084338 ATCCTAACTCTCTGAAGTTACAGTGGAATGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTAT
1 ATCCTAACTCCCTAAAGTTACAGTGGAATGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTAC
15084403 AGTAGAGTAGATCACACCAGATTGAAGCCGATA
66 AGTAGAGTAGATCACACCAGATTGAAGCCGATA
* * * *
15084436 ATCCTATCTCCCTAAAGTTGCAGTGGAGTGGATTAAAATCACA-GATCTTATCTCTCTGAAGTTA
1 ATCCTAACTCCCTAAAGTTACAGTGGAATGGATTAAAAT-AAAGGATCTTATCTCTCTGAAGTTA
15084500 CAGTAGAGTAGATCA
65 CAGTAGAGTAGATCA
15084515 TATCAGGTCT
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
98 69 0.97
99 2 0.03
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (98 bp):
ATCCTAACTCCCTAAAGTTACAGTGGAATGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTAC
AGTAGAGTAGATCACACCAGATTGAAGCCGATA
Found at i:15086037 original size:12 final size:12
Alignment explanation
Indices: 15085998--15086029 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
15085988 ATAAATTTCA
15085998 TATTATTACTAT
1 TATTATTACTAT
15086010 TATTATTACTAT
1 TATTATTACTAT
15086022 TATTATTA
1 TATTATTA
15086030 GTTTTATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.59
Consensus pattern (12 bp):
TATTATTACTAT
Found at i:15086158 original size:2 final size:2
Alignment explanation
Indices: 15086151--15086206 Score: 96
Period size: 2 Copynumber: 28.5 Consensus size: 2
15086141 ATGCCTGTAC
15086151 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
15086193 AT AT TT AT -T AT AT A
1 AT AT AT AT AT AT AT A
15086207 GTATTTTCAC
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 50 0.98
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:15086446 original size:13 final size:13
Alignment explanation
Indices: 15086422--15086535 Score: 74
Period size: 12 Copynumber: 8.2 Consensus size: 13
15086412 TCCTTTATTG
15086422 TTATTATTATTT-T
1 TTATT-TTATTTAT
15086435 ATTATTTTATTTAT
1 -TTATTTTATTTAT
15086449 TTATTTTTACTTTAT
1 TTA-TTTTA-TTTAT
15086464 GTTCA-TTTATTTAT
1 -TT-ATTTTATTTAT
15086478 TTA-TTTATTTAT
1 TTATTTTATTTAT
* *
15086490 TTATATGTCCATTTTT
1 TTAT-T-T-TATTTAT
15086506 TTATGTTTTAGTTTAT
1 TTA--TTTTA-TTTAT
15086522 TTA-TTTATTTAT
1 TTATTTTATTTAT
15086534 TT
1 TT
15086536 GTTATTGTAT
Statistics
Matches: 84, Mismatches: 4, Indels: 26
0.74 0.04 0.23
Matches are distributed among these distances:
12 20 0.24
13 15 0.18
14 17 0.20
15 11 0.13
16 18 0.21
17 2 0.02
18 1 0.01
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.71
Consensus pattern (13 bp):
TTATTTTATTTAT
Found at i:15086449 original size:4 final size:4
Alignment explanation
Indices: 15086440--15086535 Score: 81
Period size: 4 Copynumber: 23.8 Consensus size: 4
15086430 ATTTTATTAT
15086440 TTTA TTTA TTTA -TT- TTTA CTTTA TGTTCA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA T-TT-A TTTA TTTA TTTA TTTA TTTA
* * ** * *
15086489 TTTA TATG TCCA TTTT TTTA TGT- TTTA GTTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTT
15086536 GTTATTGTAT
Statistics
Matches: 74, Mismatches: 11, Indels: 14
0.75 0.11 0.14
Matches are distributed among these distances:
3 6 0.08
4 54 0.73
5 12 0.16
6 2 0.03
ACGTcount: A:0.21, C:0.04, G:0.04, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:15086503 original size:32 final size:32
Alignment explanation
Indices: 15086440--15086525 Score: 99
Period size: 32 Copynumber: 2.8 Consensus size: 32
15086430 ATTTTATTAT
* *
15086440 TTTATTTATTTA-TT-TTTACTT-TATGTTCA
1 TTTATTTATTTATTTATTTATTTATATGTCCA
15086469 TTTATTTATTTATTTATTTATTTATATGTCCA
1 TTTATTTATTTATTTATTTATTTATATGTCCA
* *
15086501 TTTTTTTATGT-TTTAGTTTATTTAT
1 TTTATTTATTTATTTA-TTTATTTAT
15086526 TTATTTATTT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
29 12 0.24
30 2 0.04
31 10 0.20
32 25 0.51
ACGTcount: A:0.21, C:0.05, G:0.05, T:0.70
Consensus pattern (32 bp):
TTTATTTATTTATTTATTTATTTATATGTCCA
Found at i:15086870 original size:109 final size:109
Alignment explanation
Indices: 15086669--15087193 Score: 755
Period size: 109 Copynumber: 4.8 Consensus size: 109
15086659 AAAAGAAATT
* * * * *
15086669 TTTCTAAATGAGGCAATATTTAGCTTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
1 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
*
15086734 CAATTTTTCTCATTCAACCAAATGGCTTAATATCCTTTTAAAAA
66 CGATTTTTCTCATTCAACCAAATGGCTTAATATCCTTTTAAAAA
* *
15086778 TTTCAAAATAAGGCAATGTTTTGCGTTTGGATATTCGAGAAAACATGCCCTAAGGTGCTGGGCGT
1 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
* *
15086843 CGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTAAAAAAA
66 CGATTTTTCTCATTCAACCAAATGGCTTAATATCCTTT-TAAAAA
*
15086888 TTTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCAAGAAAACATGCCCTAAGGTGCTGGGTG
1 -TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTG
*
15086953 TCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAA
65 TCGATTTTTCTCATTCAACCAAATGGCTTAATATCCTTTTAAAAA
* *
15086998 TTTTAAAATAAGGCAATGTTTTGCGTTTAGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
1 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
* *
15087063 CGATTTTTCTCATTCAACCAAATGGCTAAATATCTTTTTAAAAA
66 CGATTTTTCTCATTCAACCAAATGGCTTAATATCCTTTTAAAAA
* * ** * ** * * * * *
15087107 TTTCGAAGTAAGATAATATTTTGCGTTTGGAAATTTAAGGAAACGTGCCCTAATGCGCTGGGTTT
1 TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
**
15087172 CGATTTTTC-CATTTGACCAAAT
66 CGATTTTTCTCATTCAACCAAAT
15087194 AGCCAAATAT
Statistics
Matches: 378, Mismatches: 36, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
108 11 0.03
109 257 0.68
110 10 0.03
111 100 0.26
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (109 bp):
TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGT
CGATTTTTCTCATTCAACCAAATGGCTTAATATCCTTTTAAAAA
Found at i:15087067 original size:220 final size:219
Alignment explanation
Indices: 15086659--15087193 Score: 777
Period size: 220 Copynumber: 2.4 Consensus size: 219
15086649 ATATTTCAAA
* * * * *
15086659 AAAAGAAATTTTTCTAAATGAGGCAATATTTAGCTTTTGGAAATTCGAGAAAACATGCCCTAAGG
1 AAAA-AAA-TTTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCAAGAAAACATGCCCTAAGG
*
15086724 TGCTGGGTGTCAATTTTTCTCATTCAACCAAATGGCTTAATATCCTTTTAAAAATTTCAAAATAA
64 TGCTGGGTGTCGATTTTTCTCATTCAACCAAATGGCTTAATATCCTTTTAAAAATTTCAAAATAA
* *
15086789 GGCAATGTTTTGCGTTTGGATATTCGAGAAAACATGCCCTAAGGTGCTGGGCGTCGATTTTTCTC
129 GGCAATGTTTTGCGTTTAGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGCGTCGATTTTTCTC
* *
15086854 GTTCAACCAAATGGCTTAATATCCTTT
194 ATTCAACCAAATGGCTAAATAT-CTTT
*
15086881 AAAAAAATTTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCAAGAAAACATGCCCTAAGGTG
1 AAAAAAATTTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCAAGAAAACATGCCCTAAGGTG
* *
15086946 CTGGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTAAAATAAGG
66 CTGGGTGTCGATTTTTCTCATTCAACCAAATGGCTTAATATCCTTTTAAAAATTTCAAAATAAGG
*
15087011 CAATGTTTTGCGTTTAGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCAT
131 CAATGTTTTGCGTTTAGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGCGTCGATTTTTCTCAT
15087076 TCAACCAAATGGCTAAATATCTTT
196 TCAACCAAATGGCTAAATATCTTT
** * * ** * * * * *
15087100 TTAAAAA-TTTCGAAGTAAGATAATATTTTGCGTTTGGAAATTTAAGGAAACGTGCCCTAATGCG
1 AAAAAAATTTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCAAGAAAACATGCCCTAAGGTG
* **
15087164 CTGGGTTTCGATTTTTC-CATTTGACCAAAT
66 CTGGGTGTCGATTTTTCTCATTCAACCAAAT
15087194 AGCCAAATAT
Statistics
Matches: 283, Mismatches: 30, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
217 10 0.04
218 63 0.22
219 9 0.03
220 194 0.69
221 3 0.01
222 4 0.01
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (219 bp):
AAAAAAATTTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCAAGAAAACATGCCCTAAGGTG
CTGGGTGTCGATTTTTCTCATTCAACCAAATGGCTTAATATCCTTTTAAAAATTTCAAAATAAGG
CAATGTTTTGCGTTTAGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGCGTCGATTTTTCTCAT
TCAACCAAATGGCTAAATATCTTT
Found at i:15089070 original size:19 final size:20
Alignment explanation
Indices: 15089033--15089070 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
15089023 CTTTTATTTT
*
15089033 TAAAATCTACATAATAATTG
1 TAAAATCTACATAAAAATTG
15089053 TAAAATCTA-ATAAAAATT
1 TAAAATCTACATAAAAATT
15089071 TTACCTCGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
TAAAATCTACATAAAAATTG
Found at i:15090063 original size:51 final size:51
Alignment explanation
Indices: 15090008--15090107 Score: 139
Period size: 51 Copynumber: 2.0 Consensus size: 51
15089998 AATTATTTAA
15090008 AAATAGGGATTTAAGAGAAATTTA-AGAGGAACTTAAGAGCAAATTGAGATT
1 AAATAGGGATTTAAGAGAAATTTAGA-AGGAACTTAAGAGCAAATTGAGATT
* * * * *
15090059 AAATATGGATTTGAGAGAAATTTGGAAGGAATTTGAGAGCAAATTGAGA
1 AAATAGGGATTTAAGAGAAATTTAGAAGGAACTTAAGAGCAAATTGAGA
15090108 GGAAATTTAA
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
51 42 0.98
52 1 0.02
ACGTcount: A:0.45, C:0.03, G:0.26, T:0.26
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTTAGAAGGAACTTAAGAGCAAATTGAGATT
Found at i:15095091 original size:32 final size:31
Alignment explanation
Indices: 15095041--15095133 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 31
15095031 ATTTTCTTGT
*
15095041 AGATAAACA-TTAA-ATTAAATTAAATATTA
1 AGATAATCATTTAATATTAAATTAAATATTA
*
15095070 AGATAATCACTTTAATATTAAATTAATAGTTTTA
1 AGATAATCA-TTTAATATTAAATTAA-A-TATTA
* *
15095104 AGATAATTATTTAAT-TT-AATTTAATATTA
1 AGATAATCATTTAATATTAAATTAAATATTA
15095133 A
1 A
15095134 ACTATTAAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 10
0.78 0.07 0.14
Matches are distributed among these distances:
29 13 0.24
30 1 0.02
31 9 0.17
32 12 0.22
33 7 0.13
34 12 0.22
ACGTcount: A:0.49, C:0.03, G:0.04, T:0.43
Consensus pattern (31 bp):
AGATAATCATTTAATATTAAATTAAATATTA
Found at i:15095091 original size:37 final size:36
Alignment explanation
Indices: 15095049--15095147 Score: 98
Period size: 37 Copynumber: 2.8 Consensus size: 36
15095039 GTAGATAAAC
15095049 ATTAAATTAAATTAAATATTAAGATAATCACTTTAAT
1 ATTAAATTAAATTAAATATTAAGATAATCA-TTTAAT
* * *
15095086 ATTAAATT-AA-T-AGTTTTAAGATAATTATTTAAT
1 ATTAAATTAAATTAAATATTAAGATAATCATTTAAT
* *
15095119 -TTAATTTAATATTAAACTATTAAAATAAT
1 ATTAAATTAA-ATTAAA-TATTAAGATAAT
15095148 ATTATTTTTG
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
32 6 0.12
33 7 0.14
34 14 0.28
35 2 0.04
36 3 0.06
37 18 0.36
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.44
Consensus pattern (36 bp):
ATTAAATTAAATTAAATATTAAGATAATCATTTAAT
Found at i:15107734 original size:12 final size:12
Alignment explanation
Indices: 15107717--15107742 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
15107707 TTGTATCAAG
15107717 GTCGATTATGTT
1 GTCGATTATGTT
15107729 GTCGATTATGTT
1 GTCGATTATGTT
15107741 GT
1 GT
15107743 ATTGAGGCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.08, G:0.27, T:0.50
Consensus pattern (12 bp):
GTCGATTATGTT
Found at i:15115414 original size:7 final size:7
Alignment explanation
Indices: 15115399--15115429 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
15115389 AACATAGTTG
*
15115399 ATTTCGT
1 ATTTAGT
15115406 ATTTAGT
1 ATTTAGT
15115413 ATTTAGT
1 ATTTAGT
15115420 ATTTAGT
1 ATTTAGT
15115427 ATT
1 ATT
15115430 ATGTATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.26, C:0.03, G:0.13, T:0.58
Consensus pattern (7 bp):
ATTTAGT
Found at i:15118529 original size:28 final size:27
Alignment explanation
Indices: 15118496--15118553 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
15118486 TCAAAATAAT
15118496 TTTTTCAGAACACATCATGCCAAATTTA
1 TTTTTCAGAAC-CATCATGCCAAATTTA
* * * *
15118524 TTTTTCATATCCATCTTGTCAAATTTA
1 TTTTTCAGAACCATCATGCCAAATTTA
15118551 TTT
1 TTT
15118554 CTTCCGAAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 17 0.65
28 9 0.35
ACGTcount: A:0.29, C:0.19, G:0.05, T:0.47
Consensus pattern (27 bp):
TTTTTCAGAACCATCATGCCAAATTTA
Found at i:15118623 original size:28 final size:29
Alignment explanation
Indices: 15118588--15118651 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
15118578 AAAAAATTAT
*
15118588 ACCCTAAACCCTAATTTATTTATT-AAAA
1 ACCCTAAACCATAATTTATTTATTCAAAA
*
15118616 ACCCTAAACCATAATTTATTTTTTCAAAA
1 ACCCTAAACCATAATTTATTTATTCAAAA
*
15118645 ATCCTAA
1 ACCCTAA
15118652 TCCTAACCCT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
28 22 0.69
29 10 0.31
ACGTcount: A:0.42, C:0.22, G:0.00, T:0.36
Consensus pattern (29 bp):
ACCCTAAACCATAATTTATTTATTCAAAA
Found at i:15118684 original size:20 final size:19
Alignment explanation
Indices: 15118657--15118696 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
15118647 CCTAATCCTA
*
15118657 ACCCTAAACCTTAAACCCT
1 ACCCTAAACCATAAACCCT
*
15118676 ACCCATAAACCATAAGCCCT
1 ACCC-TAAACCATAAACCCT
15118696 A
1 A
15118697 ACATAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.40, C:0.40, G:0.03, T:0.17
Consensus pattern (19 bp):
ACCCTAAACCATAAACCCT
Found at i:15118815 original size:39 final size:39
Alignment explanation
Indices: 15118744--15118827 Score: 111
Period size: 39 Copynumber: 2.2 Consensus size: 39
15118734 CTAAAGTGCC
*
15118744 CCCACGTCAACGTGCTTTTGCCATGTCAGCAAAAGC-GCT
1 CCCACGTCAACGTGCTTTTGCCATGACAGCAAAA-CTGCT
15118783 CCCACGTCAACGTGCTTTTG-C-TGACATGGCAAAACTGCT
1 CCCACGTCAACGTGCTTTTGCCATGACA--GCAAAACTGCT
15118822 CCCACG
1 CCCACG
15118828 ACAAGGTATT
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
37 4 0.10
38 2 0.05
39 35 0.85
ACGTcount: A:0.23, C:0.35, G:0.20, T:0.23
Consensus pattern (39 bp):
CCCACGTCAACGTGCTTTTGCCATGACAGCAAAACTGCT
Found at i:15119690 original size:16 final size:18
Alignment explanation
Indices: 15119658--15119691 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
15119648 TTTAAATAAA
15119658 AATTTTATATAGTTTTTT
1 AATTTTATATAGTTTTTT
15119676 AATTTTAT-T-GTTTTTT
1 AATTTTATATAGTTTTTT
15119692 TTAAAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 1 0.06
18 8 0.50
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.71
Consensus pattern (18 bp):
AATTTTATATAGTTTTTT
Found at i:15120662 original size:22 final size:22
Alignment explanation
Indices: 15120636--15120677 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
15120626 TTTCTCACAT
* *
15120636 TCTCAAATCTCTCTCAAATTTA
1 TCTCAAATCCCTCTAAAATTTA
*
15120658 TCTCAATTCCCTCTAAAATT
1 TCTCAAATCCCTCTAAAATT
15120678 CTCATTCAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.40
Consensus pattern (22 bp):
TCTCAAATCCCTCTAAAATTTA
Found at i:15125468 original size:2 final size:2
Alignment explanation
Indices: 15125461--15125489 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
15125451 AGTTATTTTA
15125461 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
15125490 AACATATCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15126590 original size:20 final size:20
Alignment explanation
Indices: 15126565--15126606 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
15126555 TATACGAAAA
15126565 TTAAAACCTTAAAACTTTAT
1 TTAAAACCTTAAAACTTTAT
* *
15126585 TTAAAACCTTACAATTTTAT
1 TTAAAACCTTAAAACTTTAT
15126605 TT
1 TT
15126607 GAAGAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.14, G:0.00, T:0.45
Consensus pattern (20 bp):
TTAAAACCTTAAAACTTTAT
Found at i:15126996 original size:73 final size:73
Alignment explanation
Indices: 15126872--15127020 Score: 253
Period size: 73 Copynumber: 2.0 Consensus size: 73
15126862 AAGCGTACCT
* * * *
15126872 GAATTCATGAATTCCTTGAAATTTTTCCAGATATTGGGGATTTGATCTTCCAAATTAGCATATAA
1 GAATCCATGAATTCCTTGAAATTTTTCCAGATATTGAGGATTTGATCTTCCAAATTAGCACACAA
15126937 GAAATTCA
66 GAAATTCA
*
15126945 GAATCCATGAATTCCTTGAAATTTTTCCAGATCTTGAGGATTTGATCTTCCAAATTAGCACACAA
1 GAATCCATGAATTCCTTGAAATTTTTCCAGATATTGAGGATTTGATCTTCCAAATTAGCACACAA
15127010 GAAATTCA
66 GAAATTCA
15127018 GAA
1 GAA
15127021 AATATTTGCT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (73 bp):
GAATCCATGAATTCCTTGAAATTTTTCCAGATATTGAGGATTTGATCTTCCAAATTAGCACACAA
GAAATTCA
Found at i:15127816 original size:29 final size:32
Alignment explanation
Indices: 15127770--15127835 Score: 111
Period size: 29 Copynumber: 2.2 Consensus size: 32
15127760 CTTTAAACCA
15127770 AAAATATATATATAGATTTTTATAT-AA-TTT
1 AAAATATATATATAGATTTTTATATAAACTTT
15127800 AAAA-ATATATATAGATTTTTATATAAACTTT
1 AAAATATATATATAGATTTTTATATAAACTTT
15127831 AAAAT
1 AAAAT
15127836 TTTAAACCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
29 20 0.61
30 6 0.18
31 7 0.21
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (32 bp):
AAAATATATATATAGATTTTTATATAAACTTT
Found at i:15133668 original size:62 final size:62
Alignment explanation
Indices: 15133542--15133660 Score: 202
Period size: 62 Copynumber: 1.9 Consensus size: 62
15133532 CCAGTGTCTT
*
15133542 TGGTTGTGTGGTCTTGTACCACAAACAGTGAGTTACACAGCCTAGGTACACGCCCATATCCC
1 TGGTTGTGTGGTCTTGTACCACAAACAGTGAGTTACACAGCCTAGGCACACGCCCATATCCC
* * *
15133604 TGGTTGTGTGGTCTTGTACTACAAACAGTGAGTTATACGGCCTAGGCACACGCCCAT
1 TGGTTGTGTGGTCTTGTACCACAAACAGTGAGTTACACAGCCTAGGCACACGCCCAT
15133661 GTTCCTGGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 53 1.00
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (62 bp):
TGGTTGTGTGGTCTTGTACCACAAACAGTGAGTTACACAGCCTAGGCACACGCCCATATCCC
Found at i:15134843 original size:3 final size:3
Alignment explanation
Indices: 15134835--15134888 Score: 101
Period size: 3 Copynumber: 18.3 Consensus size: 3
15134825 ATGTGTACTC
15134835 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
15134883 TT- TTA T
1 TTA TTA T
15134889 AGTTTGTGTT
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 48 0.96
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:15138032 original size:16 final size:16
Alignment explanation
Indices: 15138011--15138063 Score: 97
Period size: 16 Copynumber: 3.3 Consensus size: 16
15138001 TTGGTTCGCT
15138011 GTAATGGAATAGAGGC
1 GTAATGGAATAGAGGC
*
15138027 GTAATGGAATAGAGAC
1 GTAATGGAATAGAGGC
15138043 GTAATGGAATAGAGGC
1 GTAATGGAATAGAGGC
15138059 GTAAT
1 GTAAT
15138064 AGCAATTCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.40, C:0.06, G:0.34, T:0.21
Consensus pattern (16 bp):
GTAATGGAATAGAGGC
Found at i:15138341 original size:37 final size:37
Alignment explanation
Indices: 15138262--15138359 Score: 110
Period size: 37 Copynumber: 2.6 Consensus size: 37
15138252 TAAATAATAA
* *
15138262 ATAATTTAATAATAAT-TTAAAATAGTTATTATTAAAT
1 ATAATTTAATAA-AATCTTAATATAATTATTATTAAAT
* *
15138299 ATAATTTAATAAAATTCTTAATATAATTATTCTTATAT
1 ATAATTTAATAAAA-TCTTAATATAATTATTATTAAAT
* *
15138337 -TAATTTACTAAAATCATAATATA
1 ATAATTTAATAAAATCTTAATATA
15138360 TAATAATATA
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
36 11 0.21
37 25 0.47
38 17 0.32
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.46
Consensus pattern (37 bp):
ATAATTTAATAAAATCTTAATATAATTATTATTAAAT
Found at i:15138732 original size:77 final size:77
Alignment explanation
Indices: 15138605--15138766 Score: 306
Period size: 77 Copynumber: 2.1 Consensus size: 77
15138595 ATTTTTTGTC
*
15138605 CACTTTAATAATTGAACTTGACAATTAAATATATTTTAATCTTTGAACTTGAAATATATAAAATT
1 CACTTTAATAATTGAACTTGACAATTAAATATATTTCAATCTTTGAACTTGAAATATATAAAATT
15138670 TTATTGACATAA
66 TTATTGACATAA
*
15138682 CACTTTAATAATTGAACTTGACAATTAGATATATTTCAATCTTTGAACTTGAAATATATAAAATT
1 CACTTTAATAATTGAACTTGACAATTAAATATATTTCAATCTTTGAACTTGAAATATATAAAATT
15138747 TTATTGACATAA
66 TTATTGACATAA
15138759 CACTTTAA
1 CACTTTAA
15138767 GATTGTCTCA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
77 83 1.00
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.41
Consensus pattern (77 bp):
CACTTTAATAATTGAACTTGACAATTAAATATATTTCAATCTTTGAACTTGAAATATATAAAATT
TTATTGACATAA
Found at i:15140673 original size:31 final size:31
Alignment explanation
Indices: 15140635--15140696 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
15140625 AGTTCCTTCA
15140635 AACAACACCCTTAGCAACAAAAATTAAGTTT
1 AACAACACCCTTAGCAACAAAAATTAAGTTT
15140666 AACAACACCCTTAGCAACAAAAATTAAGTTT
1 AACAACACCCTTAGCAACAAAAATTAAGTTT
15140697 TCTTTTTTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.48, C:0.23, G:0.06, T:0.23
Consensus pattern (31 bp):
AACAACACCCTTAGCAACAAAAATTAAGTTT
Found at i:15150276 original size:35 final size:36
Alignment explanation
Indices: 15150210--15150338 Score: 165
Period size: 34 Copynumber: 3.6 Consensus size: 36
15150200 ATAAATACCA
*
15150210 AAAATTATTTTAAAATTAAACAAAATTAAAAAGTTTTTT
1 AAAATTATTTT-AAATT-AA-AAAATTAAAAAGTATTTT
15150249 AAAA-TATTTTAAATTAAAAAATTAAAAAGTATTTT
1 AAAATTATTTTAAATTAAAAAATTAAAAAGTATTTT
* *
15150284 AAAA--ATTTTAAATTTAAAATTTAAAAAGTATTTT
1 AAAATTATTTTAAATTAAAAAATTAAAAAGTATTTT
* *
15150318 AAAATTATTTGAAAATAAAAA
1 AAAATTATTTTAAATTAAAAA
15150339 TAAAAATAAT
Statistics
Matches: 82, Mismatches: 6, Indels: 7
0.86 0.06 0.07
Matches are distributed among these distances:
34 32 0.39
35 21 0.26
36 14 0.17
37 5 0.06
38 6 0.07
39 4 0.05
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.40
Consensus pattern (36 bp):
AAAATTATTTTAAATTAAAAAATTAAAAAGTATTTT
Found at i:15161612 original size:33 final size:33
Alignment explanation
Indices: 15161570--15161635 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
15161560 GCATAAATAT
15161570 GAAAGAAATAAGGAAACAATGTGAATTAAGGGC
1 GAAAGAAATAAGGAAACAATGTGAATTAAGGGC
15161603 GAAAGAAATAAGGAAACAATGTGAATTAAGGGC
1 GAAAGAAATAAGGAAACAATGTGAATTAAGGGC
15161636 AAAATTATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.52, C:0.06, G:0.27, T:0.15
Consensus pattern (33 bp):
GAAAGAAATAAGGAAACAATGTGAATTAAGGGC
Found at i:15162655 original size:42 final size:41
Alignment explanation
Indices: 15162607--15162729 Score: 140
Period size: 42 Copynumber: 3.0 Consensus size: 41
15162597 AAGTTTCAAT
* * *
15162607 TTAACCC-TATTGGGTTTCTGTTCAGTTCTTTTGAGCTTTAG
1 TTAACCCTTA-TGGGTTTCTGTTCAGCTCTTATGAGCTTCAG
* *
15162648 CTTAACCCTTATGGGTTTCCGTTCAGCTCTTATGAGCTTCCG
1 -TTAACCCTTATGGGTTTCTGTTCAGCTCTTATGAGCTTCAG
* * *
15162690 TTAAACCCTTATGGGTTTCTGTTTAGCACTTATGTGCTTC
1 TT-AACCCTTATGGGTTTCTGTTCAGCTCTTATGAGCTTC
15162730 TGTATAGCCT
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
41 2 0.03
42 66 0.94
43 2 0.03
ACGTcount: A:0.15, C:0.22, G:0.19, T:0.44
Consensus pattern (41 bp):
TTAACCCTTATGGGTTTCTGTTCAGCTCTTATGAGCTTCAG
Found at i:15162681 original size:21 final size:21
Alignment explanation
Indices: 15162655--15162723 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 21
15162645 TAGCTTAACC
* *
15162655 CTTATGGGTTTCCGTTCAGCT
1 CTTATGGGTTTCCGTTAAGCA
* * * *
15162676 CTTATGAGCTTCCGTTAAACC
1 CTTATGGGTTTCCGTTAAGCA
* *
15162697 CTTATGGGTTTCTGTTTAGCA
1 CTTATGGGTTTCCGTTAAGCA
15162718 CTTATG
1 CTTATG
15162724 TGCTTCTGTA
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.16, C:0.22, G:0.20, T:0.42
Consensus pattern (21 bp):
CTTATGGGTTTCCGTTAAGCA
Found at i:15162730 original size:21 final size:21
Alignment explanation
Indices: 15162697--15162737 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
15162687 CCGTTAAACC
* *
15162697 CTTATGGGTTTCTGTTTAGCA
1 CTTATGGGCTTCTGTATAGCA
*
15162718 CTTATGTGCTTCTGTATAGC
1 CTTATGGGCTTCTGTATAGC
15162738 CTTCGGGCTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.17, G:0.22, T:0.46
Consensus pattern (21 bp):
CTTATGGGCTTCTGTATAGCA
Done.