Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62769430
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1067035 characters in sequence are not A, C, G, or T
File 55 of 206
Found at i:15497084 original size:82 final size:82
Alignment explanation
Indices: 15496988--15497164 Score: 318
Period size: 82 Copynumber: 2.2 Consensus size: 82
15496978 ATGAATCAAT
* *
15496988 TCAGGCTTAAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGTTATAAGCCTAGCAGGCTA
1 TCAGGCTTTAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAGCCTAGCAGGCTA
15497053 AGTGCCGGTGATCTGAA
66 AGTGCCGGTGATCTGAA
15497070 TCAGGCTTTAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAGCCTAGCAGGCTA
1 TCAGGCTTTAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAGCCTAGCAGGCTA
*
15497135 GGTGCCGGTGATCTGAA
66 AGTGCCGGTGATCTGAA
*
15497152 TCAGACTTTAAGC
1 TCAGGCTTTAAGC
15497165 TTAGTAGACT
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 91 1.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (82 bp):
TCAGGCTTTAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAGCCTAGCAGGCTA
AGTGCCGGTGATCTGAA
Found at i:15497187 original size:82 final size:82
Alignment explanation
Indices: 15496988--15497187 Score: 274
Period size: 82 Copynumber: 2.4 Consensus size: 82
15496978 ATGAATCAAT
* * * * * *
15496988 TCAGGCTTAAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGTTATAAGCCTAGCAGGCTA
1 TCAGACTTTAAGCCTAGCAGACTAACTGCCAGTGAACTGAATCAGGCTATAAGCCTAGCAGGCTA
15497053 AGTGCCGGTGATCTGAA
66 AGTGCCGGTGATCTGAA
* * * *
15497070 TCAGGCTTTAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAAGCCTAGCAGGCTA
1 TCAGACTTTAAGCCTAGCAGACTAACTGCCAGTGAACTGAATCAGGCTATAAGCCTAGCAGGCTA
*
15497135 GGTGCCGGTGATCTGAA
66 AGTGCCGGTGATCTGAA
* * *
15497152 TCAGACTTTAAGCTTAGTAGACTAACTGTCAGTGAA
1 TCAGACTTTAAGCCTAGCAGACTAACTGCCAGTGAA
15497188 TCTGTTTTAA
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
82 108 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.23
Consensus pattern (82 bp):
TCAGACTTTAAGCCTAGCAGACTAACTGCCAGTGAACTGAATCAGGCTATAAGCCTAGCAGGCTA
AGTGCCGGTGATCTGAA
Found at i:15497331 original size:2 final size:2
Alignment explanation
Indices: 15497324--15497352 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
15497314 GTTTGGTGAG
15497324 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
15497353 TGGTTATCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15497454 original size:40 final size:40
Alignment explanation
Indices: 15497377--15497458 Score: 110
Period size: 40 Copynumber: 2.0 Consensus size: 40
15497367 TTGTTGGATG
* * *
15497377 TATATATATGTATGCATTCGGCATATGTGAATTATAAGTA
1 TATATATATATATGCATTCGGCACATGTGAATGATAAGTA
* **
15497417 TATATATATATGTGCATTCGGCACATGTGGCTGATAAGTA
1 TATATATATATATGCATTCGGCACATGTGAATGATAAGTA
15497457 TA
1 TA
15497459 ATTATTTGCT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.38
Consensus pattern (40 bp):
TATATATATATATGCATTCGGCACATGTGAATGATAAGTA
Found at i:15498616 original size:13 final size:13
Alignment explanation
Indices: 15498576--15498631 Score: 62
Period size: 13 Copynumber: 4.3 Consensus size: 13
15498566 TTGGGTTGAG
15498576 AAATTAATTAGA--
1 AAATTAATTA-ATT
*
15498588 AAATTAATTTAGTT
1 AAATTAA-TTAATT
15498602 AAATTAATTAATT
1 AAATTAATTAATT
*
15498615 AAATTAATTGATT
1 AAATTAATTAATT
15498628 AAAT
1 AAAT
15498632 AAATAATATT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
12 7 0.18
13 24 0.63
14 7 0.18
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (13 bp):
AAATTAATTAATT
Found at i:15498629 original size:26 final size:26
Alignment explanation
Indices: 15498576--15498631 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
15498566 TTGGGTTGAG
*
15498576 AAATTAATTAGAAAATTAATTTAGTT
1 AAATTAATTAGAAAATTAATTGAGTT
15498602 AAATTAATTA-ATTAAATTAATTGA-TT
1 AAATTAATTAGA--AAATTAATTGAGTT
15498628 AAAT
1 AAAT
15498632 AAATAATATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
25 1 0.04
26 16 0.59
27 10 0.37
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (26 bp):
AAATTAATTAGAAAATTAATTGAGTT
Found at i:15501300 original size:7 final size:7
Alignment explanation
Indices: 15501288--15501318 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
15501278 ATGACTCAGA
15501288 ATTATAG
1 ATTATAG
15501295 ATTATAG
1 ATTATAG
15501302 ATTATAG
1 ATTATAG
15501309 ATTATAG
1 ATTATAG
15501316 ATT
1 ATT
15501319 TATTGATAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (7 bp):
ATTATAG
Found at i:15504507 original size:6 final size:5
Alignment explanation
Indices: 15504451--15504504 Score: 81
Period size: 5 Copynumber: 10.2 Consensus size: 5
15504441 TTGCTTAGCT
15504451 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AGAAAA AGAAAA AGAAAA
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA AG-AAA AG-AAA AG-AAA
15504499 AGAAA A
1 AGAAA A
15504505 AGATGATTAG
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
5 31 0.65
6 17 0.35
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:15504585 original size:6 final size:6
Alignment explanation
Indices: 15504575--15504613 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
15504565 TGGGGGGCAG
* *
15504575 AGTGCA TGTGCA AGTGCA AGTGCA TGTGCA AGTGCA AGT
1 AGTGCA AGTGCA AGTGCA AGTGCA AGTGCA AGTGCA AGT
15504614 TCAATGCTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.28, C:0.15, G:0.33, T:0.23
Consensus pattern (6 bp):
AGTGCA
Found at i:15504598 original size:18 final size:18
Alignment explanation
Indices: 15504575--15504613 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
15504565 TGGGGGGCAG
15504575 AGTGCATGTGCAAGTGCA
1 AGTGCATGTGCAAGTGCA
15504593 AGTGCATGTGCAAGTGCA
1 AGTGCATGTGCAAGTGCA
15504611 AGT
1 AGT
15504614 TCAATGCTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.28, C:0.15, G:0.33, T:0.23
Consensus pattern (18 bp):
AGTGCATGTGCAAGTGCA
Found at i:15521283 original size:41 final size:41
Alignment explanation
Indices: 15521238--15521318 Score: 162
Period size: 41 Copynumber: 2.0 Consensus size: 41
15521228 GAATGTAAGC
15521238 TACACGATGCTGCTCATACGAGCTGTGGAGAATCCACAACT
1 TACACGATGCTGCTCATACGAGCTGTGGAGAATCCACAACT
15521279 TACACGATGCTGCTCATACGAGCTGTGGAGAATCCACAAC
1 TACACGATGCTGCTCATACGAGCTGTGGAGAATCCACAAC
15521319 AAATGCAGGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (41 bp):
TACACGATGCTGCTCATACGAGCTGTGGAGAATCCACAACT
Found at i:15522643 original size:27 final size:27
Alignment explanation
Indices: 15522613--15522672 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
15522603 AGAAGGCTTG
* * *
15522613 GCGAGCTAGTATATGCCAGCAGGTCTA
1 GCGAGATAGTATACGCCAGCAGGTCCA
* * *
15522640 GCGAGATGGTATACGCTAGTAGGTCCA
1 GCGAGATAGTATACGCCAGCAGGTCCA
15522667 GCGAGA
1 GCGAGA
15522673 CGATGTATGC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.27, C:0.20, G:0.33, T:0.20
Consensus pattern (27 bp):
GCGAGATAGTATACGCCAGCAGGTCCA
Found at i:15524117 original size:27 final size:26
Alignment explanation
Indices: 15524086--15524176 Score: 119
Period size: 27 Copynumber: 3.4 Consensus size: 26
15524076 ACAGAATGCA
*
15524086 CCACAAAGGCGATCTATACAGAGTACG
1 CCACAAAGGTGAT-TATACAGAGTACG
* * *
15524113 GCACAAAGGTTATATATACAGAGTATG
1 CCACAAAGGTGAT-TATACAGAGTACG
15524140 CCACAAAGGTGATTCATACAGAGTACG
1 CCACAAAGGTGATT-ATACAGAGTACG
15524167 CCACAAAGGT
1 CCACAAAGGT
15524177 AGACAAGATG
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.02
27 54 0.98
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.19
Consensus pattern (26 bp):
CCACAAAGGTGATTATACAGAGTACG
Found at i:15524919 original size:3 final size:3
Alignment explanation
Indices: 15524911--15524943 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
15524901 ATACCACTTA
15524911 AAG AAG AAG AAG AAG AAG AAG AAG AAGG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA-G AAG AA
15524944 CCCTTTAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:15533442 original size:24 final size:21
Alignment explanation
Indices: 15533390--15533442 Score: 52
Period size: 23 Copynumber: 2.3 Consensus size: 21
15533380 TATATATATT
* *
15533390 TTTTAGATTTTTTAAAAAATA
1 TTTTATATTTTTTAAAAAAAA
15533411 TTTATATATATTTTTAAAATACAAA
1 TTT-TATAT-TTTTTAAAA-A-AAA
15533436 TTTTATA
1 TTTTATA
15533443 AATATTTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 3 0.12
22 4 0.15
23 9 0.35
24 5 0.19
25 5 0.19
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (21 bp):
TTTTATATTTTTTAAAAAAAA
Found at i:15533457 original size:18 final size:19
Alignment explanation
Indices: 15533434--15533495 Score: 65
Period size: 20 Copynumber: 3.3 Consensus size: 19
15533424 TTAAAATACA
*
15533434 AATTTTATAAA-TATTTTG
1 AATTTTAAAAATTATTTTG
*
15533452 AATTTTAAAAATTATTTTCA
1 AATTTTAAAAATTATTTT-G
* *
15533472 AATTTTGAAAATTACTTTG
1 AATTTTAAAAATTATTTTG
15533491 -ATTTT
1 AATTTT
15533496 TTTTTGTAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
18 15 0.41
19 6 0.16
20 16 0.43
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (19 bp):
AATTTTAAAAATTATTTTG
Found at i:15533477 original size:20 final size:20
Alignment explanation
Indices: 15533432--15533485 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
15533422 TTTTAAAATA
*
15533432 CAAATTTTATAAA-TATTTT
1 CAAATTTTAAAAATTATTTT
*
15533451 -GAATTTTAAAAATTATTTT
1 CAAATTTTAAAAATTATTTT
*
15533470 CAAATTTTGAAAATTA
1 CAAATTTTAAAAATTA
15533486 CTTTGATTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
18 10 0.34
19 6 0.21
20 13 0.45
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (20 bp):
CAAATTTTAAAAATTATTTT
Found at i:15534903 original size:42 final size:42
Alignment explanation
Indices: 15534791--15534963 Score: 179
Period size: 43 Copynumber: 4.1 Consensus size: 42
15534781 TCCTGATGTG
* *
15534791 TGATTTCATGTAAGACCATGTCTAGGACATTGGCATCG-ATA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATA
*
15534832 TGAGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATA
1 T--GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATA
* * * * * * *
15534876 TGATTTCATATAAGACCCTGTTTGGGACAGTAGCATCGATATG
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TATA
* * * *
15534919 TGATAACATGTAAGACCATATCTGGGATA-TGGCATTGTATA
1 TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATA
15534960 TGAT
1 TGAT
15534964 ATATGTGTTT
Statistics
Matches: 107, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
41 8 0.07
42 36 0.34
43 59 0.55
44 4 0.04
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (42 bp):
TGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATA
Found at i:15534934 original size:85 final size:84
Alignment explanation
Indices: 15534791--15534963 Score: 229
Period size: 85 Copynumber: 2.0 Consensus size: 84
15534781 TCCTGATGTG
* * * * * *
15534791 TGATTTCATGTAAGACCATGTCTAGGACATTGGCATCGATATGAGATTACGTGTAAGACCATGTC
1 TGATTTCATATAAGACCATGTCTAGGACAGTAGCATCGATATGAGATAACATGTAAGACCATATC
15534856 TGGGACATTGGCATCGTATA
66 TGGGACA-TGGCATCGTATA
* * * *
15534876 TGATTTCATATAAGACCCTGTTTGGGACAGTAGCATCGATATGTGATAACATGTAAGACCATATC
1 TGATTTCATATAAGACCATGTCTAGGACAGTAGCATCGATATGAGATAACATGTAAGACCATATC
* *
15534941 TGGGATATGGCATTGTATA
66 TGGGACATGGCATCGTATA
15534960 TGAT
1 TGAT
15534964 ATATGTGTTT
Statistics
Matches: 76, Mismatches: 12, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
84 15 0.20
85 61 0.80
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (84 bp):
TGATTTCATATAAGACCATGTCTAGGACAGTAGCATCGATATGAGATAACATGTAAGACCATATC
TGGGACATGGCATCGTATA
Found at i:15538045 original size:100 final size:100
Alignment explanation
Indices: 15537926--15538122 Score: 340
Period size: 100 Copynumber: 2.0 Consensus size: 100
15537916 TTAGAAACTC
* * *
15537926 AAAAAAATATTTGGGAAACAACCAATAGTAAATTAGTAAATAATTAGATAAAATATGAATTTTAA
1 AAAAAAATATTTGGAAAACAACCAATAGAAAATTAGTAAAAAATTAGATAAAATATGAATTTTAA
15537991 GAAAATAAATTATAATATTAAATTGAAAAAAAGCA
66 GAAAATAAATTATAATATTAAATTGAAAAAAAGCA
*
15538026 AAAAAAATATTTGGAAAACAACCAATAGAAAATTAGTAAAAAATTAGATAAAATATTAATTTTAA
1 AAAAAAATATTTGGAAAACAACCAATAGAAAATTAGTAAAAAATTAGATAAAATATGAATTTTAA
* *
15538091 GAAAGTAGATTATAATATTAAATTGAAAAAAA
66 GAAAATAAATTATAATATTAAATTGAAAAAAA
15538123 CGGTAAAGTA
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 91 1.00
ACGTcount: A:0.59, C:0.04, G:0.10, T:0.28
Consensus pattern (100 bp):
AAAAAAATATTTGGAAAACAACCAATAGAAAATTAGTAAAAAATTAGATAAAATATGAATTTTAA
GAAAATAAATTATAATATTAAATTGAAAAAAAGCA
Found at i:15538311 original size:15 final size:14
Alignment explanation
Indices: 15538283--15538309 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15538273 ACATGTGTTT
15538283 TTTTTTAATATTTA
1 TTTTTTAATATTTA
15538297 TTTTTTAATATTT
1 TTTTTTAATATTT
15538310 TACTATACTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTTTTAATATTTA
Found at i:15541779 original size:41 final size:41
Alignment explanation
Indices: 15541722--15541806 Score: 170
Period size: 41 Copynumber: 2.1 Consensus size: 41
15541712 GATTTGCCTC
15541722 TTCTTGTTTGAAGATGACCAAATAGGTTTAAAATAAAGGTG
1 TTCTTGTTTGAAGATGACCAAATAGGTTTAAAATAAAGGTG
15541763 TTCTTGTTTGAAGATGACCAAATAGGTTTAAAATAAAGGTG
1 TTCTTGTTTGAAGATGACCAAATAGGTTTAAAATAAAGGTG
15541804 TTC
1 TTC
15541807 AGGGGATGTG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.35
Consensus pattern (41 bp):
TTCTTGTTTGAAGATGACCAAATAGGTTTAAAATAAAGGTG
Found at i:15544395 original size:28 final size:28
Alignment explanation
Indices: 15544364--15544421 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
15544354 CTTAAACCCT
* *
15544364 AAATTTAAAATCC-CAAACCCTGAATTCA
1 AAATTTAAAA-CCTCAAACCCTAAACTCA
15544392 AAATTTAAAACCTCAAACCCTAAACTCA
1 AAATTTAAAACCTCAAACCCTAAACTCA
15544420 AA
1 AA
15544422 TACTAAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 2 0.07
28 25 0.93
ACGTcount: A:0.50, C:0.26, G:0.02, T:0.22
Consensus pattern (28 bp):
AAATTTAAAACCTCAAACCCTAAACTCA
Found at i:15544608 original size:17 final size:18
Alignment explanation
Indices: 15544586--15544619 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15544576 TTGTTTATAA
15544586 TTTAAA-AAATTAATTAT
1 TTTAAATAAATTAATTAT
*
15544603 TTTAAATAATTTAATTA
1 TTTAAATAAATTAATTA
15544620 AAGTTAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TTTAAATAAATTAATTAT
Found at i:15556058 original size:51 final size:51
Alignment explanation
Indices: 15555997--15556183 Score: 182
Period size: 51 Copynumber: 3.7 Consensus size: 51
15555987 TCGGTTCTCA
* * *
15555997 TAGTAGCCTGCACATAGTACTATACATGTGACCATTACCATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATTACCATCCGGTACACG
* * * * * * ** *
15556048 TAGTATCCTGCACGTAGTACTACACACGTGATCGA-AACTATCTGGTATGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATTACCATCCGGTACACG
* * * * *
15556099 TAGTAGTCTGCACATAGTACTTCACATGCGA-C-TTATCATTCCGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATTACCA-TCCGGTACACG
15556149 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
15556184 CACTTTCACT
Statistics
Matches: 101, Mismatches: 30, Indels: 9
0.72 0.21 0.06
Matches are distributed among these distances:
49 2 0.02
50 34 0.34
51 62 0.61
52 3 0.03
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATTACCATCCGGTACACG
Found at i:15556171 original size:101 final size:102
Alignment explanation
Indices: 15555995--15556179 Score: 277
Period size: 101 Copynumber: 1.8 Consensus size: 102
15555985 GTTCGGTTCT
* *
15555995 CATAGTAGCCTGCACATAGTACTATACATGTGACCATTACCATCCGATACACGTAGTATCCTGCA
1 CATAGTAGCCTGCACATAGTACTATACATGCGACCATTACCATCCGATACACGTAGTAGCCTGCA
*
15556060 CGTAGTACTACACACGTGATCGAAACTATCTGGTATG
66 CATAGTACTACACACGTGATCGAAACTATCTGGTATG
* * *
15556097 CATAGTAGTCTGCACATAGTACT-TCACATGCGA-C-TTATCATTCCGGTACACGTAGTAGCCTG
1 CATAGTAGCCTGCACATAGTACTAT-ACATGCGACCATTACCA-TCCGATACACGTAGTAGCCTG
15556159 CACATAGTACTACACACGTGA
64 CACATAGTACTACACACGTGA
15556180 CCATCACTTT
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
100 5 0.07
101 41 0.55
102 29 0.39
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTATACATGCGACCATTACCATCCGATACACGTAGTAGCCTGCA
CATAGTACTACACACGTGATCGAAACTATCTGGTATG
Found at i:15560161 original size:14 final size:14
Alignment explanation
Indices: 15560142--15560174 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
15560132 AAGCCCAAAA
15560142 CCAAATTCAGTGGC
1 CCAAATTCAGTGGC
15560156 CCAAATTCAGTGGC
1 CCAAATTCAGTGGC
15560170 CCAAA
1 CCAAA
15560175 CAAACATGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.33, C:0.30, G:0.18, T:0.18
Consensus pattern (14 bp):
CCAAATTCAGTGGC
Found at i:15561416 original size:2 final size:2
Alignment explanation
Indices: 15561409--15561463 Score: 101
Period size: 2 Copynumber: 27.5 Consensus size: 2
15561399 CCTATTCTCG
15561409 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
15561451 TA TA TA TG TA TA T
1 TA TA TA TA TA TA T
15561464 TAGTATTTTT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:15562115 original size:98 final size:98
Alignment explanation
Indices: 15561995--15562184 Score: 319
Period size: 98 Copynumber: 1.9 Consensus size: 98
15561985 AATCATGAAG
* *
15561995 GAAATATTCCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTTAAA
1 GAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGATGTGATTTCTTAAA
15562060 TCTTGGATA-AGTGGATGTTCTTTTAAATTAAAA
66 TCTTGGA-AGAGTGGATGTTCTTTTAAATTAAAA
* * *
15562093 GAAATATTCCGAGTTTGGGATTCTAAAGGGATCGTGCCCTAACGTATTGGATGTGGTTTCTTAAA
1 GAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGATGTGATTTCTTAAA
15562158 TCTTGGAAGAGTGGATGTTCTTTTAAA
66 TCTTGGAAGAGTGGATGTTCTTTTAAA
15562185 ATTTTTATAT
Statistics
Matches: 86, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
97 1 0.01
98 85 0.99
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.37
Consensus pattern (98 bp):
GAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGATGTGATTTCTTAAA
TCTTGGAAGAGTGGATGTTCTTTTAAATTAAAA
Found at i:15564746 original size:39 final size:39
Alignment explanation
Indices: 15564700--15564801 Score: 125
Period size: 39 Copynumber: 2.6 Consensus size: 39
15564690 GTATCGAGCC
*
15564700 TTGAGCCTAGCAGGCCTCATG-CTGGTGACTGATCAGGCT
1 TTGAGCCTAGCAGGCCTCATGTC-GATGACTGATCAGGCT
* * *
15564739 TTGAGCCTAGCAGGCTTCGTGTCGATGACTTATCAGGCT
1 TTGAGCCTAGCAGGCCTCATGTCGATGACTGATCAGGCT
* * *
15564778 TTGAGCCTAACAGGCTTCGTGTCG
1 TTGAGCCTAGCAGGCCTCATGTCG
15564802 GTGTTTATCG
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
39 56 0.98
40 1 0.02
ACGTcount: A:0.18, C:0.25, G:0.29, T:0.28
Consensus pattern (39 bp):
TTGAGCCTAGCAGGCCTCATGTCGATGACTGATCAGGCT
Found at i:15566188 original size:71 final size:70
Alignment explanation
Indices: 15566113--15566346 Score: 193
Period size: 71 Copynumber: 3.2 Consensus size: 70
15566103 CACATGATAT
**
15566113 ATCTCAGCCATCGATAAAGTATAATG-T-GATGCTGCTCACTCAAGCTGTCGAGAATCTGCAACA
1 ATCTCAGCCATCGAT--A-TATAATGATCGATGCTGCTCACTCAAGCTGTCGAGAATCCCCAACA
15566176 CATGTTGG
63 CATGTTGG
* * **
15566184 ATCTCAACCATCGCTATATAATGATCCGATGCTGCTCACTCAAGCTGTCGAGAATCCCCAACTTA
1 ATCTCAGCCATCGATATATAATGAT-CGATGCTGCTCACTCAAGCTGTCGAGAATCCCCAACACA
15566249 TGTTGG
65 TGTTGG
* * * * * * *
15566255 ATCTTAGCCATAATAGTTCGTTATATAATAATACGATGTTGCTCACGCAAGCTATCGAGAATCCG
1 ATCTCAGCC-----A--TCGATATATAATGAT-CGATGCTGCTCACTCAAGCTGTCGAGAATCCC
*** *
15566320 CAATTTATGTTGA
58 CAACACATGTTGG
15566333 ATCTCAGCCATCGA
1 ATCTCAGCCATCGA
15566347 ATAAATCTCT
Statistics
Matches: 134, Mismatches: 19, Indels: 20
0.77 0.11 0.12
Matches are distributed among these distances:
68 7 0.05
69 2 0.01
71 63 0.47
73 1 0.01
76 1 0.01
78 60 0.45
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (70 bp):
ATCTCAGCCATCGATATATAATGATCGATGCTGCTCACTCAAGCTGTCGAGAATCCCCAACACAT
GTTGG
Found at i:15566328 original size:78 final size:78
Alignment explanation
Indices: 15566198--15566343 Score: 211
Period size: 78 Copynumber: 1.9 Consensus size: 78
15566188 CAACCATCGC
* * * * * *
15566198 TATATAATGATCCGATGCTGCTCACTCAAGCTGTCGAGAATCCCCAACTTATGTTGGATCTTAGC
1 TATATAATAATACGATGCTGCTCACGCAAGCTATCGAGAATCCCCAACTTATGTTGAATCTCAGC
15566263 CATAATAGTTCGT
66 CATAATAGTTCGT
* * *
15566276 TATATAATAATACGATGTTGCTCACGCAAGCTATCGAGAATCCGCAATTTATGTTGAATCTCAGC
1 TATATAATAATACGATGCTGCTCACGCAAGCTATCGAGAATCCCCAACTTATGTTGAATCTCAGC
15566341 CAT
66 CAT
15566344 CGAATAAATC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
78 59 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (78 bp):
TATATAATAATACGATGCTGCTCACGCAAGCTATCGAGAATCCCCAACTTATGTTGAATCTCAGC
CATAATAGTTCGT
Found at i:15567705 original size:21 final size:22
Alignment explanation
Indices: 15567681--15567721 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
15567671 TCCAAAGCAC
*
15567681 GGGAAATTGGCTTA-CATTTTA
1 GGGAAAATGGCTTACCATTTTA
*
15567702 GGGAAAATGTCTTACCATTT
1 GGGAAAATGGCTTACCATTT
15567722 CAATTTCTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (22 bp):
GGGAAAATGGCTTACCATTTTA
Found at i:15570828 original size:14 final size:15
Alignment explanation
Indices: 15570806--15570882 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
15570796 CAATTAAACA
15570806 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
15570820 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
15570835 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
15570855 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
15570869 ACGGAAAA-CATTTT
1 CCAGAAAATCATTTT
15570883 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 22 0.44
15 14 0.28
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:15570847 original size:20 final size:20
Alignment explanation
Indices: 15570822--15570861 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
15570812 AATATTTTCC
*
15570822 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
15570842 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
15570862 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:15570867 original size:34 final size:35
Alignment explanation
Indices: 15570810--15570876 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
15570800 TAAACACCAG
*
15570810 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
15570845 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
15570877 CATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:15570883 original size:14 final size:14
Alignment explanation
Indices: 15570845--15570884 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
15570835 ACAGAAAAGT
*
15570845 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
15570859 AAATCATTTTACGG
1 AAAACATTTTACAG
15570873 AAAACATTTTAC
1 AAAACATTTTAC
15570885 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:15579429 original size:15 final size:16
Alignment explanation
Indices: 15579392--15579437 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
15579382 ATAATAGTTT
15579392 ATATTATATTATAAAA
1 ATATTATATTATAAAA
*
15579408 ATATTATTTTAT-AAA
1 ATATTATATTATAAAA
* *
15579423 ATTTTATATAATAAA
1 ATATTATATTATAAA
15579438 TATAAAGTCA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
ATATTATATTATAAAA
Found at i:15582542 original size:17 final size:17
Alignment explanation
Indices: 15582520--15582553 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
15582510 ACATATAATT
15582520 GGGCCCAATACAATGAG
1 GGGCCCAATACAATGAG
15582537 GGGCCCAATACAATGAG
1 GGGCCCAATACAATGAG
15582554 ATGTCTGAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.24, G:0.29, T:0.12
Consensus pattern (17 bp):
GGGCCCAATACAATGAG
Found at i:15583980 original size:42 final size:42
Alignment explanation
Indices: 15583920--15584068 Score: 156
Period size: 42 Copynumber: 3.5 Consensus size: 42
15583910 CCGAAGGCTG
** * * *
15583920 AACAGAAGCTCATGAGAGCTAAATAGAAACCCATAAGGGTTG
1 AACAGAAGCTTGTAAGAGCTAAACAGAAACCCATAAGGGTTA
*
15583962 AACGGAAGCTTGTAAGAGCTAAACAGAAACCCATAAGGGTTA
1 AACAGAAGCTTGTAAGAGCTAAACAGAAACCCATAAGGGTTA
** * * * *
15584004 AACAGAAGC-TCAATAGAGCTGAACAGAAACTCATATGAGTTA
1 AACAGAAGCTTGTA-AGAGCTAAACAGAAACCCATAAGGGTTA
* *
15584046 AACAGAAGCTCGTGAGAGCTAAA
1 AACAGAAGCTTGTAAGAGCTAAA
15584069 TGGAAAGTAA
Statistics
Matches: 87, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
41 2 0.02
42 85 0.98
ACGTcount: A:0.44, C:0.17, G:0.23, T:0.17
Consensus pattern (42 bp):
AACAGAAGCTTGTAAGAGCTAAACAGAAACCCATAAGGGTTA
Found at i:15584068 original size:21 final size:21
Alignment explanation
Indices: 15583920--15584068 Score: 102
Period size: 21 Copynumber: 7.1 Consensus size: 21
15583910 CCGAAGGCTG
*
15583920 AACAGAAGCTCATGAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
* * * * * *
15583941 AATAGAAACCCATAAGGGTTG
1 AACAGAAGCTCATAAGAGCTA
* **
15583962 AACGGAAGCTTGTAAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
* * * *
15583983 AACAGAAACCCATAAGGGTTA
1 AACAGAAGCTCATAAGAGCTA
*
15584004 AACAGAAGCTCA-ATAGAGCTG
1 AACAGAAGCTCATA-AGAGCTA
* * *
15584025 AACAGAAACTCATATGAGTTA
1 AACAGAAGCTCATAAGAGCTA
* *
15584046 AACAGAAGCTCGTGAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
15584067 AA
1 AA
15584069 TGGAAAGTAA
Statistics
Matches: 89, Mismatches: 37, Indels: 4
0.68 0.28 0.03
Matches are distributed among these distances:
20 1 0.01
21 87 0.98
22 1 0.01
ACGTcount: A:0.44, C:0.17, G:0.23, T:0.17
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTA
Found at i:15589846 original size:29 final size:29
Alignment explanation
Indices: 15589784--15589848 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 29
15589774 GTTAAATTTT
*
15589784 ATTATTAAAATAAAATTGTAGTATTAAAA
1 ATTATTAAAATAAAAATGTAGTATTAAAA
15589813 ATTATTAAAATAATAAAT-TA-TATTAATAA
1 ATTATTAAAATAA-AAATGTAGTATTAA-AA
*
15589842 TTTATTA
1 ATTATTA
15589849 TATTATTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
28 6 0.19
29 23 0.72
30 3 0.09
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (29 bp):
ATTATTAAAATAAAAATGTAGTATTAAAA
Found at i:15590259 original size:2 final size:2
Alignment explanation
Indices: 15590252--15590294 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
15590242 GATACATTTG
15590252 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15590294 T
1 T
15590295 TGCATATTTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:15591682 original size:5 final size:5
Alignment explanation
Indices: 15591674--15591700 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
15591664 TTAATTGGCT
15591674 TTTTG TTTTG TTTTG TTTTG TTTTG TT
1 TTTTG TTTTG TTTTG TTTTG TTTTG TT
15591701 GAATTGTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81
Consensus pattern (5 bp):
TTTTG
Found at i:15597248 original size:23 final size:22
Alignment explanation
Indices: 15597205--15597262 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
15597195 AAAAGGTATC
* *
15597205 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
15597226 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
15597249 TGCATATCATATCT
1 TACAAATCATATCT
15597263 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:15597933 original size:45 final size:45
Alignment explanation
Indices: 15597844--15598398 Score: 318
Period size: 45 Copynumber: 12.7 Consensus size: 45
15597834 TTCTAATACA
* * * * * * *
15597844 CTCCACTACAACTTTAGGGAGATGAGATTTG-TTTATTTAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTCGCTTTCTTGAGTCTG
* ** * * *
15597888 CCCCACTGCAGTTTCAGGGGGATAAGACTTGATTTCTTGAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTCGCTTTCTTGAGTCTG
*
15597933 CTCCACTGCAACTTCAGGGAGATAAGACTCGCTTTCTTGGGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTCGCTTTCTTGAGTCTG
*
15597978 CTCCACTGCAACTTCAGGGAGATAAGACTCGCTTTCTTGGGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTCGCTTTCTTGAGTCTG
* * *
15598023 TTCCACTGCAACTTCAGGGAGATAAGAC-C-CAATGC--GA-TCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTCGC-TTTCTTGAGTCTG
* * * * * **
15598064 CT-CTCTACAACTTTAGAGAGATAAGA-TCTG-TGATT-TT-AATCCA
1 CTCCACTGCAACTTCAGGGAGATAAGACTC-GCT--TTCTTGAGTCTG
* ** * * *
15598107 CTCCACTGCAACTTCAGGGAGATAGGA-T-TATTGGCTTTA-TCTA
1 CTCCACTGCAACTTCAGGGAGATAAGACTCGCTT-TCTTGAGTCTG
* * ** *
15598150 CTCCACTACAACTTCAGGGAGATAAGATTCGCCATCTTTAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTCGCTTTCTTGAGTCTG
* * * *
15598195 C-CTCACTACAACTTCA-GGAGGATAAGGCTTGCTTACTT-AGTCTG
1 CTC-CACTGCAACTTCAGGGA-GATAAGACTCGCTTTCTTGAGTCTG
* * *
15598239 CTCCACTGCAACTTCAGGGAGATAAGACTAG-ATGC--GA-TCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTCGCTTTCTTGAGTCTG
* * * * *
15598280 CT-CTCTGCAACTTCAGAGAGATAAGATCTGTGC-TT-TT-AATCCG
1 CTCCACTGCAACTTCAGGGAGATAAGA-CT-CGCTTTCTTGAGTCTG
* * ** * * *
15598323 CTCCACTGCGACTTCAGGGAGATAGGA-T-TATTGGCTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTCGCTT-TCTTGAGTCTG
* *
15598367 CTCCACTACAACTTCAGGGAGATAAGATTCGC
1 CTCCACTGCAACTTCAGGGAGATAAGACTCGC
15598399 CATCTTCAGT
Statistics
Matches: 400, Mismatches: 75, Indels: 70
0.73 0.14 0.13
Matches are distributed among these distances:
40 43 0.11
41 15 0.04
42 8 0.02
43 45 0.11
44 134 0.34
45 155 0.39
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.30
Consensus pattern (45 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTCGCTTTCTTGAGTCTG
Found at i:15598278 original size:216 final size:218
Alignment explanation
Indices: 15597933--15598410 Score: 714
Period size: 216 Copynumber: 2.2 Consensus size: 218
15597923 CTTGAGTCTG
* * ** ** *
15597933 CTCCACTGCAACTTCAGGGAGATAAGACTCGCTTTCTTGGGTCTGCTCCACTGCAACTTCAGGGA
1 CTCCACTACAACTTCAGGGAGATAAGATTCGCCATCTTCAGTCTGCTCCACTACAACTTCAGGGA
* * *
15597998 GATAAGACTCGCTTTCTTGGGTCTGTTCCACTGCAACTTCAGGGAGATAAGACCCAATGCGATCT
66 GATAAGACTCGCTTACTTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACCCAATGCGATCT
*
15598063 GCTCTCTACAACTTTAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTGCAACTTCAGGGAG
131 GCTCTCTACAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTGCAACTTCAGGGAG
15598128 ATAGGATTATTGGCTTT-ATCTA
196 ATAGGATTATTGGCTTTAATCTA
*
15598150 CTCCACTACAACTTCAGGGAGATAAGATTCGCCATCTTTAGTCTGC-CTCACTACAACTTCA-GG
1 CTCCACTACAACTTCAGGGAGATAAGATTCGCCATCTTCAGTCTGCTC-CACTACAACTTCAGGG
* * *
15598213 AGGATAAGGCTTGCTTACTT-AGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTAGATGCGA
65 A-GATAAGACTCGCTTACTTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACCCA-ATGCGA
* * * *
15598276 TCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTGCTTTTAATCCGCTCCACTGCGACTTCAGG
128 TCTGCTCTCTACAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTGCAACTTCAGG
*
15598341 GAGATAGGATTATTGGCTTTAATCTG
193 GAGATAGGATTATTGGCTTTAATCTA
15598367 CTCCACTACAACTTCAGGGAGATAAGATTCGCCATCTTCAGTCT
1 CTCCACTACAACTTCAGGGAGATAAGATTCGCCATCTTCAGTCT
15598411 TTTAAATTGC
Statistics
Matches: 237, Mismatches: 20, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
215 2 0.01
216 121 0.51
217 114 0.48
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (218 bp):
CTCCACTACAACTTCAGGGAGATAAGATTCGCCATCTTCAGTCTGCTCCACTACAACTTCAGGGA
GATAAGACTCGCTTACTTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACCCAATGCGATCT
GCTCTCTACAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTGCAACTTCAGGGAG
ATAGGATTATTGGCTTTAATCTA
Found at i:15598852 original size:44 final size:42
Alignment explanation
Indices: 15598758--15598878 Score: 170
Period size: 44 Copynumber: 2.8 Consensus size: 42
15598748 ATCTGTTATT
* *
15598758 TTCAACCTACTCCACTGTTGCTCAGGGAGATAGGATCACAATC
1 TTCAACCTATTCCACTGCTGC-CAGGGAGATAGGATCACAATC
* *
15598801 TTCAACCTATTCCATTGCTGACCAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTG-CCAGGGAGATAGGA-TCACAATC
15598845 TTCAACCTATTCCACTGCTGTCCAGGGAGATAGG
1 TTCAACCTATTCCACTGCTG-CCAGGGAGATAGG
15598879 GCTGGGGTCA
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
43 30 0.43
44 40 0.57
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (42 bp):
TTCAACCTATTCCACTGCTGCCAGGGAGATAGGATCACAATC
Found at i:15599000 original size:88 final size:88
Alignment explanation
Indices: 15598878--15599367 Score: 768
Period size: 88 Copynumber: 5.6 Consensus size: 88
15598868 AGGGAGATAG
* * *
15598878 GGCTGGGGTCATCGATCTGTTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
15598943 TCCGCTGCAACCCAGGGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* * * *
15598966 GGCTGGTGTCTTCGATCTGCTTCACTATTGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTAC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
* *
15599031 TCCGCTACAACCCAGAGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
15599054 GG-TCGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTG-TAATTTTTAACCT
1 GGCT-GGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCT-ATTTTTAACCT
* *
15599117 GCTCTGCTGCAACCCAGGGAGGGAA
64 GCTCCGCTGCAACCCAGGGAGGCAA
*
15599142 GGCTGGTGTCTTCGATCTGCTTCGCTGTTGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
* *
15599207 TCCGTTGCAACCCAGTGAGGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* *
15599230 GGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGT
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
* *
15599295 TCCGCTACAACCCAGGGAAGCAA
66 TCCGCTGCAACCCAGGGAGGCAA
* *
15599318 GGTTGGTGTCTTCGATCTGTTTCGCTGTCGGTGCAGGAAGGCAAGATCTG
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTG
15599368 TTATCTTCAC
Statistics
Matches: 366, Mismatches: 32, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
87 2 0.01
88 362 0.99
89 2 0.01
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.28
Consensus pattern (88 bp):
GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
TCCGCTGCAACCCAGGGAGGCAA
Found at i:15600720 original size:14 final size:15
Alignment explanation
Indices: 15600697--15600729 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
15600687 ATCGACGCTT
15600697 TTCCAAATAAGGT-C
1 TTCCAAATAAGGTCC
*
15600711 TTCCACATAAGGTCC
1 TTCCAAATAAGGTCC
15600726 TTCC
1 TTCC
15600730 CAGCTTGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.30
Consensus pattern (15 bp):
TTCCAAATAAGGTCC
Found at i:15601604 original size:25 final size:26
Alignment explanation
Indices: 15601553--15601613 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
15601543 AAGAAAATCC
* **
15601553 AAAAGAATGAAAGAATAATTATTTCA
1 AAAAGAATGAAAAAATAATTAGCTCA
*
15601579 AAAAGAATGAAAAAAT-ATTGGCTCA
1 AAAAGAATGAAAAAATAATTAGCTCA
15601604 AAAATGAATG
1 AAAA-GAATG
15601614 TAAAGATGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 10 0.33
26 20 0.67
ACGTcount: A:0.57, C:0.05, G:0.15, T:0.23
Consensus pattern (26 bp):
AAAAGAATGAAAAAATAATTAGCTCA
Found at i:15606004 original size:23 final size:22
Alignment explanation
Indices: 15605961--15606018 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
15605951 AAAAGGTATC
* *
15605961 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
15605982 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
15606005 TGCATATCATATCT
1 TACAAATCATATCT
15606019 AATATTACAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:15611255 original size:23 final size:23
Alignment explanation
Indices: 15611225--15611270 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
15611215 AACACTTAAA
15611225 ACATGAACAGAACTTTTATTATT
1 ACATGAACAGAACTTTTATTATT
15611248 ACATGAACAGAACTTTTATTATT
1 ACATGAACAGAACTTTTATTATT
15611271 TTAACTAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (23 bp):
ACATGAACAGAACTTTTATTATT
Found at i:15622058 original size:30 final size:30
Alignment explanation
Indices: 15622022--15622090 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
15622012 ATTTTGGCAA
*
15622022 AAAACTCTCAAATTTCTCCCTAAATTTTTC
1 AAAACTCTCAAATTTCTCCCTAAATTTCTC
*
15622052 AAAACTCTCAAATTTCTCCTTAAATTTCTC
1 AAAACTCTCAAATTTCTCCCTAAATTTCTC
15622082 AAAACTCTC
1 AAAACTCTC
15622091 TTTAATTAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.35, C:0.28, G:0.00, T:0.38
Consensus pattern (30 bp):
AAAACTCTCAAATTTCTCCCTAAATTTCTC
Found at i:15627221 original size:126 final size:123
Alignment explanation
Indices: 15627007--15627254 Score: 299
Period size: 126 Copynumber: 2.0 Consensus size: 123
15626997 TATTTAATAG
* *
15627007 AAGAACTACTGTAGAAAAAGAGTGCCAACGTGGGTTTTTTTCATCAATTTTGCTGAAGTGCATCT
1 AAGAACTACTATAGAAAAAGAGCGCCAACGTGGGTTTTTTTCATCAATTTTGCTGAAGTGCATCT
* * * *
15627072 CGCTTGAAGGGTTTTTGATACTATTTGTTCAGAAAC-ATCTTCTCAAAATTATTTTTTC
66 CGCTTGAAGGGTTTTTCACACTATTTGTTCA-AAACTATATTCACAAAATTATTTTTTC
* *
15627130 AAGAACTACTATAGAAAAAGAGCGTCC-ACATGGGAGTTTTTTTTAGT-AATTTTGC-GAACAGT
1 AAGAACTACTATAGAAAAAGAGCG-CCAACGT-GG-GTTTTTTTCA-TCAATTTTGCTG-A-AGT
* *
15627192 GCATC-CTGCTTGAAGTGTTTTTCACACTATTTGTTCAAAACTGTATTCACAAAATTATTTTTT
60 GCATCTC-GCTTGAAGGGTTTTTCACACTATTTGTTCAAAACTATATTCACAAAATTATTTTTT
15627255 TTAGGAATTA
Statistics
Matches: 107, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
123 25 0.23
124 5 0.05
125 23 0.21
126 54 0.50
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (123 bp):
AAGAACTACTATAGAAAAAGAGCGCCAACGTGGGTTTTTTTCATCAATTTTGCTGAAGTGCATCT
CGCTTGAAGGGTTTTTCACACTATTTGTTCAAAACTATATTCACAAAATTATTTTTTC
Found at i:15627408 original size:34 final size:33
Alignment explanation
Indices: 15627335--15627442 Score: 135
Period size: 33 Copynumber: 3.2 Consensus size: 33
15627325 CACAATATTA
* * **
15627335 TTTAAAAAAACTATACCCTAAAGTAATTAATTT
1 TTTAAAAACACTAAACCCTAATTTAATTAATTT
* *
15627368 TTTAAAAACACTAAACCTTAATTTATTTAATTT
1 TTTAAAAACACTAAACCCTAATTTAATTAATTT
*
15627401 ATTTAAAAACCCTAAACCCTAATTTAATTAATTT
1 -TTTAAAAACACTAAACCCTAATTTAATTAATTT
*
15627435 TTAAAAAA
1 TTTAAAAA
15627443 GAACACTAAA
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
33 34 0.53
34 30 0.47
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.39
Consensus pattern (33 bp):
TTTAAAAACACTAAACCCTAATTTAATTAATTT
Found at i:15627512 original size:21 final size:21
Alignment explanation
Indices: 15627487--15627557 Score: 61
Period size: 21 Copynumber: 3.4 Consensus size: 21
15627477 TAAAACTTAG
15627487 AACCCTAAATTATTTTAACAA
1 AACCCTAAATTATTTTAACAA
*** *** **
15627508 AACCCTAAACCCTACAAACCT
1 AACCCTAAATTATTTTAACAA
*
15627529 AACCTTAAATTATTTTAACAA
1 AACCCTAAATTATTTTAACAA
15627550 AACCCTAA
1 AACCCTAA
15627558 CCCTAAAAAT
Statistics
Matches: 32, Mismatches: 18, Indels: 0
0.64 0.36 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.46, C:0.27, G:0.00, T:0.27
Consensus pattern (21 bp):
AACCCTAAATTATTTTAACAA
Found at i:15627551 original size:42 final size:42
Alignment explanation
Indices: 15627487--15627572 Score: 138
Period size: 42 Copynumber: 2.0 Consensus size: 42
15627477 TAAAACTTAG
*
15627487 AACCCTAAATTATTTTAACAAAACCCTAAACCCTACAAA-CCT
1 AACCCTAAATTATTTTAACAAAACCCT-AACCCTAAAAATCCT
*
15627529 AACCTTAAATTATTTTAACAAAACCCTAACCCTAAAAATCCT
1 AACCCTAAATTATTTTAACAAAACCCTAACCCTAAAAATCCT
15627571 AA
1 AA
15627573 ACCAAAAAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
41 10 0.24
42 31 0.76
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.26
Consensus pattern (42 bp):
AACCCTAAATTATTTTAACAAAACCCTAACCCTAAAAATCCT
Found at i:15630324 original size:4 final size:4
Alignment explanation
Indices: 15630315--15630347 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
15630305 AGTGCGGTGT
15630315 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
15630348 GCCCATTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:15630702 original size:109 final size:109
Alignment explanation
Indices: 15630511--15630938 Score: 596
Period size: 109 Copynumber: 3.9 Consensus size: 109
15630501 TTTTTTTAAA
*
15630511 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAATGTGCTGGGTTTCGAT
1 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGAT
15630576 TTTTCTCGTTCGACCAAATAACCAAATATCCTTTTAAAAATTTC
66 TTTTCTCGTTCGACCAAATAACCAAATATCCTTTTAAAAATTTC
* * * *
15630620 AAAATAAGGCAACGTTTTGCGTTTAGAAATTTGAGAAAACGTGCCATAATGTGCTGGGTTTCGAT
1 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGAT
*
15630685 TTTTCTCGTTCGACCAAATAATCAAATATCCTTTTAAAAATTTC
66 TTTTCTCGTTCGACCAAATAACCAAATATCCTTTTAAAAATTTC
* * * *
15630729 AAAATAAGACAATATTTTGCGTTTGAAAATTCGAGAAAACGTGCCCTAATGTGTTGGGTTTCGAT
1 AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGAT
* * *
15630794 TTTTCTCGCTT-AACCAAATAACTAAATATCCTTTCAAAAATTTC
66 TTTTCTCG-TTCGACCAAATAACCAAATATCCTTTTAAAAATTTC
* * * * *
15630838 AAAATAAGGCAATGTTTTGTGTTTGGAAACTT-GAGAAAACTTGCTCTAATGCT-TTGGGCTTCG
1 AAAATAAGGCAATGTTTTGCGTTTGGAAA-TTCGAGAAAACGTGCCCTAATG-TGCTGGGTTTCG
* * * *
15630901 A--TTTCTCGTTGGACCAAATAGCCGAATATCCTCTTAAA
64 ATTTTTCTCGTTCGACCAAATAACCAAATATCCTTTTAAA
15630939 TCTTAATCTA
Statistics
Matches: 284, Mismatches: 31, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
106 2 0.01
107 28 0.10
109 249 0.88
110 5 0.02
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (109 bp):
AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGAT
TTTTCTCGTTCGACCAAATAACCAAATATCCTTTTAAAAATTTC
Found at i:15634660 original size:17 final size:17
Alignment explanation
Indices: 15634640--15634696 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 17
15634630 AAAAAAAGAG
*
15634640 AAAGAAGGAAAAAGAAA
1 AAAGAAAGAAAAAGAAA
*
15634657 AAAGAAAGAAGAAGAAGA
1 AAAGAAAGAAAAAGAA-A
* *
15634675 AAATAAAAAGAAAAGAAA
1 AAAGAAAGA-AAAAGAAA
15634693 AAAG
1 AAAG
15634697 GAGAGGCCAA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
17 14 0.44
18 12 0.38
19 6 0.19
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (17 bp):
AAAGAAAGAAAAAGAAA
Found at i:15634668 original size:24 final size:22
Alignment explanation
Indices: 15634629--15634688 Score: 68
Period size: 24 Copynumber: 2.6 Consensus size: 22
15634619 AAAATTGTTT
*
15634629 AAAAAAAAGAGAAAGAAGGAA-A
1 AAAAAAAAGAAAAAGAA-GAAGA
15634651 AAGAAAAAAGAAAGAAGAAGAAGA
1 AA-AAAAAAGAAA-AAGAAGAAGA
15634675 AAATAAAAAGAAAA
1 AAA-AAAAAGAAAA
15634689 GAAAAAAGGA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
22 2 0.06
23 14 0.42
24 17 0.52
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (22 bp):
AAAAAAAAGAAAAAGAAGAAGA
Found at i:15635501 original size:50 final size:50
Alignment explanation
Indices: 15635442--15635880 Score: 285
Period size: 50 Copynumber: 8.8 Consensus size: 50
15635432 ATTGCAATTA
* * * * * *
15635442 AAAATATTGAAGCCACAACGACGAATCTTACTTCCCTGGCGGTGTAGTGG
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACAGTGCAGTGG
* * * * * * **
15635492 AACAGATTGAAACTACAACGGTGAATCTTGCTTCCCTGACATTGCAATTA
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACAGTGCAGTGG
* * * *
15635542 AAAAGATTGAGGCCACAACGGCGAATCTTACTTCCCT-AGCGGTGTAGTGG
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGA-CAGTGCAGTGG
* ** ** * * * * * *
15635592 AACAGATTGAAGCTGTAACGGCGAATCTCGCTTCCCCGATATTACAAT-T
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACAGTGCAGTGG
* * * * * * *
15635641 AAAATATTGAGGCCACAACGGCGAATCTTACATCCCAGGCGGTGCAGTGG
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACAGTGCAGTGG
* * ** * * * * *
15635691 AATAGATTGAAGCTACAACGGTGAATCTCGCTTCCCCGATATTGCAAT-T
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACAGTGCAGTGG
* * ** * * *
15635740 AAAAGATTGAGGCCACAACGGTAAATCTTAGTTCCCTGGCGGTGCAGTGG
1 AAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACAGTGCAGTGG
* * * * *
15635790 AATAGATTGAAGCTACAATGGCGAATCTTTCTTTCCC-GACATTGCAGT-T
1 AAAAGATTGAAGCTACAACGGCGAATCTTAC-TTCCCTGACAGTGCAGTGG
**
15635839 AAATAGATTGAAGCTACAACAACGAATCTTACTTCCCTGACA
1 AAA-AGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACA
15635881 AACAGATCAA
Statistics
Matches: 278, Mismatches: 104, Indels: 14
0.70 0.26 0.04
Matches are distributed among these distances:
49 75 0.27
50 197 0.71
51 6 0.02
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (50 bp):
AAAAGATTGAAGCTACAACGGCGAATCTTACTTCCCTGACAGTGCAGTGG
Found at i:15635702 original size:99 final size:100
Alignment explanation
Indices: 15635414--15635875 Score: 570
Period size: 99 Copynumber: 4.6 Consensus size: 100
15635404 AATAAGCAAT
* * * * * *
15635414 GAATCTCACTTTCCCGACATTGCAATTAAAAATATTGAAGCCACAACGACGAATCTTACTTCCCT
1 GAATCTCGCTTCCCCGACATTGCAATTAAAAAGATTGAGGCCACAACGGCGAATCTTACTTCCCA
* * *
15635479 GGCGGTGTAGTGGAACAGATTGAAACTACAACGGT
66 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGC
* *
15635514 GAATCTTGCTTCCCTGACATTGCAATTAAAAAGATTGAGGCCACAACGGCGAATCTTACTTCCCT
1 GAATCTCGCTTCCCCGACATTGCAATTAAAAAGATTGAGGCCACAACGGCGAATCTTACTTCCC-
* **
15635579 A-GCGGTGTAGTGGAACAGATTGAAGCTGTAACGGC
65 AGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGC
* * * *
15635614 GAATCTCGCTTCCCCGATATTACAATT-AAAATATTGAGGCCACAACGGCGAATCTTACATCCCA
1 GAATCTCGCTTCCCCGACATTGCAATTAAAAAGATTGAGGCCACAACGGCGAATCTTACTTCCCA
* *
15635678 GGCGGTGCAGTGGAATAGATTGAAGCTACAACGGT
66 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGC
* ** * *
15635713 GAATCTCGCTTCCCCGATATTGCAATT-AAAAGATTGAGGCCACAACGGTAAATCTTAGTTCCCT
1 GAATCTCGCTTCCCCGACATTGCAATTAAAAAGATTGAGGCCACAACGGCGAATCTTACTTCCCA
* *
15635777 GGCGGTGCAGTGGAATAGATTGAAGCTACAATGGC
66 GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGC
** * * * * * **
15635812 GAATCTTTCTTTCCCGACATTGCAGTTAAATAGATTGAAGCTACAACAACGAATCTTACTTCCC
1 GAATCTCGCTTCCCCGACATTGCAATTAAAAAGATTGAGGCCACAACGGCGAATCTTACTTCCC
15635876 TGACAAACAG
Statistics
Matches: 314, Mismatches: 45, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
98 1 0.00
99 175 0.56
100 138 0.44
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.26
Consensus pattern (100 bp):
GAATCTCGCTTCCCCGACATTGCAATTAAAAAGATTGAGGCCACAACGGCGAATCTTACTTCCCA
GGCGGTGCAGTGGAACAGATTGAAGCTACAACGGC
Found at i:15638210 original size:109 final size:109
Alignment explanation
Indices: 15638019--15638444 Score: 644
Period size: 109 Copynumber: 3.9 Consensus size: 109
15638009 TATTTTTTTT
*
15638019 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGATTTCGATT
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATT
15638084 TTTCTCGTTCGACCAAATAACCAAATATCCTTTTAAAAATTTCA
66 TTTCTCGTTCGACCAAATAACCAAATATCCTTTTAAAAATTTCA
* * *
15638128 AAATAAGGCAACGTTTTGCGTTTAGAAATTCGAGAAAACGTGCCATAATGTGCTGGGTTTCGATT
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATT
*
15638193 TTTCTCGTTCGACCAAATAACCAAATATCCTTTTAAAAACTTCA
66 TTTCTCGTTCGACCAAATAACCAAATATCCTTTTAAAAATTTCA
15638237 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATT
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATT
* * *
15638302 TTTCTTGCTT-GACCAAATAACTAAATATCCTTTCAAAAATTTCA
66 TTTCTCG-TTCGACCAAATAACCAAATATCCTTTTAAAAATTTCA
* * * * * * *
15638346 AAATAAGACAGTGTTTTGTGTTTGGAAACTCGAG-AAACTTGCTCTAATGGGCTGGGTTTCGA--
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATT
* * * *
15638408 TTTCTCGTTGGACCAAATAGCCGAATATCCTCTTAAA
66 TTTCTCGTTCGACCAAATAACCAAATATCCTTTTAAA
15638445 TCTTAATCCA
Statistics
Matches: 290, Mismatches: 25, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
105 2 0.01
106 28 0.10
108 25 0.09
109 233 0.80
110 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Consensus pattern (109 bp):
AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATT
TTTCTCGTTCGACCAAATAACCAAATATCCTTTTAAAAATTTCA
Found at i:15642250 original size:30 final size:30
Alignment explanation
Indices: 15642216--15642272 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
15642206 TCCGAGCCTT
*
15642216 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
15642246 GGGGCAAAATTGTAATTTTGAAAAAGT
1 GGGGCAAAAATGTAATTATGAAAAAGT
15642273 AGAGTCGAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.42, C:0.04, G:0.25, T:0.30
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:15642502 original size:13 final size:13
Alignment explanation
Indices: 15642484--15642515 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
15642474 TTTCCAGCAA
15642484 TTATGAATTTATT
1 TTATGAATTTATT
15642497 TTATGAATTTATT
1 TTATGAATTTATT
*
15642510 TGATGA
1 TTATGA
15642516 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:15642721 original size:50 final size:50
Alignment explanation
Indices: 15642610--15642858 Score: 329
Period size: 50 Copynumber: 4.8 Consensus size: 50
15642600 ATTTGGGTAA
*
15642610 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC----GA-CATG
* *
15642666 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATG
*
15642716 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATG
* * *
15642766 AGAGGTTCCC-TATAAGACCATGTCTGGGACATGGCATGGGCACCAACATG
1 AGAGG-TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATG
** *
15642816 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
15642859 TGTTATTATC
Statistics
Matches: 177, Mismatches: 13, Indels: 11
0.88 0.06 0.05
Matches are distributed among these distances:
50 99 0.56
51 36 0.20
55 2 0.01
56 40 0.23
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATG
Found at i:15672080 original size:7 final size:7
Alignment explanation
Indices: 15672068--15672097 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
15672058 AGCCAAGGGC
15672068 AACGGAG
1 AACGGAG
15672075 AACGGAG
1 AACGGAG
*
15672082 AACGAAG
1 AACGGAG
15672089 AACGGAG
1 AACGGAG
15672096 AA
1 AA
15672098 ATCAGTCAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.50, C:0.13, G:0.37, T:0.00
Consensus pattern (7 bp):
AACGGAG
Found at i:15686692 original size:23 final size:24
Alignment explanation
Indices: 15686650--15686710 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 24
15686640 TGAGCTATGT
* ** *
15686650 AACAGAAAGCTTATCCGAG-TTAT
1 AACAGAAAGCTCATAAGAGTTTAA
15686673 AACAGGAAA-CTCATAAGAGTTTAA
1 AACA-GAAAGCTCATAAGAGTTTAA
15686697 AACAGAAAGCTCAT
1 AACAGAAAGCTCAT
15686711 GTGAGCTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
23 15 0.48
24 16 0.52
ACGTcount: A:0.46, C:0.16, G:0.16, T:0.21
Consensus pattern (24 bp):
AACAGAAAGCTCATAAGAGTTTAA
Found at i:15686720 original size:24 final size:24
Alignment explanation
Indices: 15686625--15686720 Score: 61
Period size: 24 Copynumber: 4.0 Consensus size: 24
15686615 CGAGCCATAT
* * **
15686625 AACAGGAAGCTCGTGTGAGCTATGT
1 AACAGAAAGCTCATGTGAGCT-TAA
* ** *
15686650 AACAGAAAGCTTATCCGAG-TTAT
1 AACAGAAAGCTCATGTGAGCTTAA
** *
15686673 AACAGGAAA-CTCATAAGAGTTTAA
1 AACA-GAAAGCTCATGTGAGCTTAA
15686697 AACAGAAAGCTCATGTGAGCTTAA
1 AACAGAAAGCTCATGTGAGCTTAA
15686721 CAGGTAACTC
Statistics
Matches: 55, Mismatches: 13, Indels: 7
0.73 0.17 0.09
Matches are distributed among these distances:
23 17 0.31
24 24 0.44
25 14 0.25
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.23
Consensus pattern (24 bp):
AACAGAAAGCTCATGTGAGCTTAA
Found at i:15693857 original size:27 final size:27
Alignment explanation
Indices: 15693825--15693880 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
15693815 TTTTATAATT
15693825 AAATAAATATAGTTTTATCTATAAACA
1 AAATAAATATAGTTTTATCTATAAACA
15693852 AAATAAATATAGTTTTATCTATAAACA
1 AAATAAATATAGTTTTATCTATAAACA
15693879 AA
1 AA
15693881 GGTGAATGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.36
Consensus pattern (27 bp):
AAATAAATATAGTTTTATCTATAAACA
Found at i:15696710 original size:35 final size:36
Alignment explanation
Indices: 15696633--15696750 Score: 114
Period size: 35 Copynumber: 3.2 Consensus size: 36
15696623 TGCCTAACGG
* * * *
15696633 ATAAACCGTAACAAAGTTTTGCACCCAGCACTAGTCGG
1 ATAAACCG--ACAAAGATGTGCACCTAGCACTAGTCGA
*
15696671 ATAAACCGACAATAGATGTGC-CCT-GCACTAGTTGA
1 ATAAACCGACAA-AGATGTGCACCTAGCACTAGTCGA
* * *
15696706 ATAAATCGACAAAGATTTGCACCTAGCACTAGTCGG
1 ATAAACCGACAAAGATGTGCACCTAGCACTAGTCGA
*
15696742 ACAAACCGA
1 ATAAACCGA
15696751 TAGTCACATA
Statistics
Matches: 66, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
34 7 0.11
35 23 0.35
36 22 0.33
37 6 0.09
38 8 0.12
ACGTcount: A:0.36, C:0.25, G:0.19, T:0.20
Consensus pattern (36 bp):
ATAAACCGACAAAGATGTGCACCTAGCACTAGTCGA
Found at i:15697006 original size:44 final size:43
Alignment explanation
Indices: 15696870--15697023 Score: 193
Period size: 43 Copynumber: 3.6 Consensus size: 43
15696860 AACTTTTGCA
* * *
15696870 GCGCTTTTACCACAAATGCCGCTATAGATCAGGATCTTTAGCG
1 GCGCTTTTACCACAAACGCCGCTATAGATCAAGACCTTTAGCG
* *
15696913 GCGCTTTT-CTAACAAACGCCGCTATAGCTCAAGACCTTTAGCG
1 GCGCTTTTAC-CACAAACGCCGCTATAGATCAAGACCTTTAGCG
*
15696956 GCGCTTTTACCACAAACGCCACTATAGATCAAAGACCTTTAGCG
1 GCGCTTTTACCACAAACGCCGCTATAGATC-AAGACCTTTAGCG
* * **
15697000 ACGCTTTGATTACAAACGCCGCTA
1 GCGCTTTTACCACAAACGCCGCTA
15697024 AAAACACCAT
Statistics
Matches: 95, Mismatches: 13, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
42 1 0.01
43 61 0.64
44 33 0.35
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (43 bp):
GCGCTTTTACCACAAACGCCGCTATAGATCAAGACCTTTAGCG
Found at i:15697114 original size:23 final size:24
Alignment explanation
Indices: 15697088--15697143 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 24
15697078 CATTTAGAAA
* *
15697088 TATTAAATAT-TAAAATTAAACAT
1 TATTAAATATCAAAAATTAAACAG
**
15697111 TATT-AATATCAAAAATTAATTAG
1 TATTAAATATCAAAAATTAAACAG
15697134 TATTAAATAT
1 TATTAAATAT
15697144 ATACTTTTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 5 0.19
23 17 0.63
24 5 0.19
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.41
Consensus pattern (24 bp):
TATTAAATATCAAAAATTAAACAG
Found at i:15702310 original size:15 final size:15
Alignment explanation
Indices: 15702275--15702312 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
15702265 GTCCCTTAAT
15702275 TAAA-CCATAATCCC
1 TAAATCCATAATCCC
15702289 T-AATCCATAATCCC
1 TAAATCCATAATCCC
15702303 TAAATCCATA
1 TAAATCCATA
15702313 TATATAGTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.09
14 12 0.55
15 8 0.36
ACGTcount: A:0.42, C:0.32, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:15702616 original size:321 final size:314
Alignment explanation
Indices: 15702103--15702712 Score: 802
Period size: 321 Copynumber: 1.9 Consensus size: 314
15702093 TAAATTATAC
*
15702103 ATCTTTTACAATTACATAATAACATATTTAAAATATAAATAAAAAATCTAAACCCAAAACCCTAA
1 ATCTTTTACAACTACATAATAACATATTTAAAATATAAATAAAAAATCTAAACCCAAAACCCTAA
*
15702168 CCCGACCCTTAAAACCCTAAACCCTAAATCCCTAACTCTTAACCACTAACGTCTAACCCCTAAAC
66 CCCGACCCTTAAAACCCTAAACCCTAAATCCCTAACTCTTAACCACTAACATCTAACCCCTAAAC
* *
15702233 TCTTAACCCCTAAACCTTAAATCTCGACCAACGTCCCTTAATTAAACCATAATCCCTAATCCATA
131 CCCTAACCCCTAAACCTTAAA-CTC-ACCAAC--CCCTTAATTAAACCATAATCCCTAATCCATA
* ** * * *
15702298 ATCCCTAAATCCATATATATAGT-ACTCCCT-AAACCTTTAAATATGAACCCCTAAACCGGCCTT
192 ATCCCTAAATCCATA-A-ATACTCACTAACTAAAACCTTAAAATATAAACCCCTAAACCGACCTT
** *
15702361 AAATATTAAAT-TTATCATATACTCTAAACTAATTAAAAACCCTAAACAATTTTATTATT
255 AAATATTAAATAAAATCATATACCCTAAACTAATTAAAAACCCTAAACAATTTTATTATT
*
15702420 ATCTTTTACAACTACATAATAACATATTTTAAATATAATAATAATAATAATCTAAACCCAAAACC
1 ATCTTTTACAACTACATAATAACATATTTAAAATAT-A-AATAA-AA-AATCTAAACCCAAAACC
* *
15702485 CTAACCCGATCCC-TGAAACCTTAAACCCTAAATCCCTAACTCTTAACCCCTAGCTAACATCTAA
62 CTAACCCGA-CCCTTAAAACCCTAAACCCTAAATCCCTAACTCTTAA--CC-A-CTAACATCTAA
* * *
15702549 CTCCTAAACCCCTAACCCCTAAGCCTTAAA-TC-CCAA-CCCTTAATTAAACCATAATCCTTATT
122 CCCCTAAACCCCTAACCCCTAAACCTTAAACTCACCAACCCCTTAATTAAACCATAATCC---CT
* * *
15702611 AATCCATAATCCCTAAATCCATAAATACTCCCTAACTAAAACCTTAAAATATAAACTCTTAAACC
184 AATCCATAATCCCTAAATCCATAAATACTCACTAACTAAAACCTTAAAATATAAACCCCTAAACC
*
15702676 GACCTTAAATCTTAAATAAAATCATATACCCTAAACT
249 GACCTTAAATATTAAATAAAATCATATACCCTAAACT
15702713 GAAAACCCTA
Statistics
Matches: 255, Mismatches: 23, Indels: 25
0.84 0.08 0.08
Matches are distributed among these distances:
317 34 0.13
318 22 0.09
319 9 0.04
320 7 0.03
321 123 0.48
322 19 0.07
323 4 0.02
324 1 0.00
325 36 0.14
ACGTcount: A:0.42, C:0.28, G:0.02, T:0.28
Consensus pattern (314 bp):
ATCTTTTACAACTACATAATAACATATTTAAAATATAAATAAAAAATCTAAACCCAAAACCCTAA
CCCGACCCTTAAAACCCTAAACCCTAAATCCCTAACTCTTAACCACTAACATCTAACCCCTAAAC
CCCTAACCCCTAAACCTTAAACTCACCAACCCCTTAATTAAACCATAATCCCTAATCCATAATCC
CTAAATCCATAAATACTCACTAACTAAAACCTTAAAATATAAACCCCTAAACCGACCTTAAATAT
TAAATAAAATCATATACCCTAAACTAATTAAAAACCCTAAACAATTTTATTATT
Found at i:15702617 original size:17 final size:17
Alignment explanation
Indices: 15702586--15702634 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
15702576 AAATCCCAAC
*
15702586 CCTTAATTAAACCATAAT
1 CCTT-ATTAATCCATAAT
15702604 CCTTATTAATCCATAAT
1 CCTTATTAATCCATAAT
*
15702621 CCCTA--AATCCATAA
1 CCTTATTAATCCATAA
15702635 ATACTCCCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 9 0.31
17 16 0.55
18 4 0.14
ACGTcount: A:0.41, C:0.27, G:0.00, T:0.33
Consensus pattern (17 bp):
CCTTATTAATCCATAAT
Found at i:15703182 original size:113 final size:113
Alignment explanation
Indices: 15703033--15703292 Score: 493
Period size: 113 Copynumber: 2.3 Consensus size: 113
15703023 GTAGTTTTAC
*
15703033 ATTAGGTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCGTGAGCATTAGCGGCGCTTCCT
1 ATTAGGTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCT
15703098 TAAAAACGCCGCTAAATCCACAAAGCTCACAAAACTGCGTCGTTTTGG
66 TAAAAACGCCGCTAAATCCACAAAGCTCACAAAACTGCGTCGTTTTGG
15703146 ATTAGGTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCT
1 ATTAGGTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCT
15703211 TAAAAACGCCGCTAAATCCACAAAGCTCACAAAACTGCGTCGTTTTGG
66 TAAAAACGCCGCTAAATCCACAAAGCTCACAAAACTGCGTCGTTTTGG
* *
15703259 ATTAGGTTTTTTGCGGCGCTTTTTAAAAAACGCC
1 ATTAGGTTTTTTGCGGCGCTTTCTCAAAAACGCC
15703293 ACTATTGCTT
Statistics
Matches: 144, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
113 144 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (113 bp):
ATTAGGTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTCCT
TAAAAACGCCGCTAAATCCACAAAGCTCACAAAACTGCGTCGTTTTGG
Found at i:15703325 original size:13 final size:13
Alignment explanation
Indices: 15703307--15703335 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
15703297 TTGCTTATTG
15703307 TTAGCGGCGTTTT
1 TTAGCGGCGTTTT
15703320 TTAGCGGCGTTTT
1 TTAGCGGCGTTTT
15703333 TTA
1 TTA
15703336 TTCAAACGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.10, C:0.14, G:0.28, T:0.48
Consensus pattern (13 bp):
TTAGCGGCGTTTT
Found at i:15703356 original size:12 final size:12
Alignment explanation
Indices: 15703339--15703364 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
15703329 TTTTTTATTC
15703339 AAACGCCGCTAA
1 AAACGCCGCTAA
15703351 AAACGCCGCTAA
1 AAACGCCGCTAA
15703363 AA
1 AA
15703365 GCCCGTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:15706508 original size:19 final size:19
Alignment explanation
Indices: 15706470--15706510 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
15706460 AAAATTTTAA
* *
15706470 AATATTTTTCATAATGTTT
1 AATATTTTTAATAATCTTT
*
15706489 AATATTTTTAATGATCTTT
1 AATATTTTTAATAATCTTT
15706508 AAT
1 AAT
15706511 TTTGAAAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.56
Consensus pattern (19 bp):
AATATTTTTAATAATCTTT
Found at i:15706549 original size:10 final size:11
Alignment explanation
Indices: 15706523--15706548 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15706513 TGAAAAATAG
15706523 TTTTTATAATT
1 TTTTTATAATT
15706534 TTTTTATAATT
1 TTTTTATAATT
15706545 TTTT
1 TTTT
15706549 AAAAATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTTATAATT
Found at i:15711112 original size:3 final size:3
Alignment explanation
Indices: 15711106--15711151 Score: 55
Period size: 3 Copynumber: 16.3 Consensus size: 3
15711096 CAAAAAAAAA
15711106 AAG AAG AAG AA- AAG AA- AAG AA- AAG AAAG AAG AAG AAG AAG AA-
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG -AAG AAG AAG AAG AAG AAG
15711148 AAG A
1 AAG A
15711152 GAGTGAGAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
2 8 0.21
3 27 0.71
4 3 0.08
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:15711128 original size:21 final size:21
Alignment explanation
Indices: 15711099--15711151 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
15711089 GAAATGCCAA
*
15711099 AAAAAAAAAGAAGAAGAAAAG
1 AAAAGAAAAGAAGAAGAAAAG
15711120 AAAAGAAAAG-A-AAGAAGAAG
1 AAAAGAAAAGAAGAAGAA-AAG
15711140 AAGAAGAAAAGA
1 AA-AAGAAAAGA
15711152 GAGTGAGAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 5 0.18
20 6 0.21
21 17 0.61
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (21 bp):
AAAAGAAAAGAAGAAGAAAAG
Found at i:15711128 original size:25 final size:26
Alignment explanation
Indices: 15711100--15711151 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
15711090 AAATGCCAAA
15711100 AAAAAAAAGAAGAAGAA-AAGAAAAG
1 AAAAAAAAGAAGAAGAAGAAGAAAAG
*
15711125 AAAAGAAAGAAGAAGAAGAAGAAAAG
1 AAAAAAAAGAAGAAGAAGAAGAAAAG
15711151 A
1 A
15711152 GAGTGAGAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (26 bp):
AAAAAAAAGAAGAAGAAGAAGAAAAG
Found at i:15711135 original size:4 final size:5
Alignment explanation
Indices: 15711099--15711151 Score: 63
Period size: 5 Copynumber: 10.2 Consensus size: 5
15711089 GAAATGCCAA
*
15711099 AAAAA AAAAG AAGAAG AAAAG AAAAG AAAAG -AAAG AAGAAG AAGAAG
1 AAAAG AAAAG AA-AAG AAAAG AAAAG AAAAG AAAAG AA-AAG AA-AAG
15711146 AAAAG A
1 AAAAG A
15711152 GAGTGAGAGA
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
4 4 0.09
5 24 0.55
6 16 0.36
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:15711138 original size:28 final size:26
Alignment explanation
Indices: 15711098--15711151 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 26
15711088 AGAAATGCCA
15711098 AAAAAAAAAAGAAGAAGAAAAGAAAAGA
1 AAAAAAAAAAGAAGAAG--AAGAAAAGA
* *
15711126 AAAGAAAGAAGAAGAAGAAGAAAAGA
1 AAAAAAAAAAGAAGAAGAAGAAAAGA
15711152 GAGTGAGAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 9 0.38
28 15 0.62
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (26 bp):
AAAAAAAAAAGAAGAAGAAGAAAAGA
Found at i:15712510 original size:16 final size:16
Alignment explanation
Indices: 15712479--15712512 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
15712469 TTCATACATG
*
15712479 TTCAAAACATACCATA
1 TTCAAAACAAACCATA
*
15712495 TTCAAAACAAATCATA
1 TTCAAAACAAACCATA
15712511 TT
1 TT
15712513 ATATAAACAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.21, G:0.00, T:0.29
Consensus pattern (16 bp):
TTCAAAACAAACCATA
Found at i:15716907 original size:2 final size:2
Alignment explanation
Indices: 15716900--15716928 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
15716890 GAGACGATGT
15716900 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
15716929 GGGAAGTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:15719534 original size:3 final size:3
Alignment explanation
Indices: 15719526--15719566 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
15719516 AAAGGAAGAT
* * *
15719526 GGA GGA GGA AGA AGA AGA GGA GGA GGA GGA GGA GGA GGA GG
1 GGA GGA GGA GGA GGA GGA GGA GGA GGA GGA GGA GGA GGA GG
15719567 CTTCGGCGTG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.39, C:0.00, G:0.61, T:0.00
Consensus pattern (3 bp):
GGA
Found at i:15719718 original size:4 final size:4
Alignment explanation
Indices: 15719704--15719734 Score: 53
Period size: 4 Copynumber: 7.5 Consensus size: 4
15719694 ACAGGCACCC
15719704 ATGG CATGG ATGG ATGG ATGG ATGG ATGG AT
1 ATGG -ATGG ATGG ATGG ATGG ATGG ATGG AT
15719735 TGTTAGAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 22 0.85
5 4 0.15
ACGTcount: A:0.26, C:0.03, G:0.45, T:0.26
Consensus pattern (4 bp):
ATGG
Found at i:15726466 original size:24 final size:23
Alignment explanation
Indices: 15726426--15726470 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
15726416 TCAAAGGTTT
*
15726426 AAAGACCTAAATAGTAAATAAGA
1 AAAGACCAAAATAGTAAATAAGA
*
15726449 AAAGATCCAAAATGGTAAATAA
1 AAAGA-CCAAAATAGTAAATAA
15726471 ACCATTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.60, C:0.09, G:0.13, T:0.18
Consensus pattern (23 bp):
AAAGACCAAAATAGTAAATAAGA
Found at i:15727096 original size:13 final size:13
Alignment explanation
Indices: 15727078--15727109 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
15727068 CGAGTTAGTA
15727078 AATATTATTTAAT
1 AATATTATTTAAT
15727091 AATATTATTTAAT
1 AATATTATTTAAT
15727104 AATATT
1 AATATT
15727110 TAAGAGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
AATATTATTTAAT
Found at i:15729652 original size:2 final size:2
Alignment explanation
Indices: 15729647--15729671 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
15729637 TATATATATA
15729647 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
15729672 TTTGTTAGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:15730238 original size:16 final size:16
Alignment explanation
Indices: 15730217--15730250 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
15730207 ATTATTTAAT
15730217 AATATCAAAGATTCTC
1 AATATCAAAGATTCTC
*
15730233 AATATCAAATATTCTC
1 AATATCAAAGATTCTC
15730249 AA
1 AA
15730251 CACTCTCCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.18, G:0.03, T:0.32
Consensus pattern (16 bp):
AATATCAAAGATTCTC
Found at i:15738857 original size:43 final size:43
Alignment explanation
Indices: 15738788--15738916 Score: 154
Period size: 43 Copynumber: 3.0 Consensus size: 43
15738778 GGCTCGTATA
* * * *
15738788 ATGCCAATGTCCCGGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCACTGTCCCAGACGTGGTCTTACACGTAAACACATATCG
* *
15738831 ATGCCACTGTCCCAGACATGGCCTTACACGTAAACACA-AGTCG
1 ATGCCACTGTCCCAGACGTGGTCTTACACGTAAACACATA-TCG
* *
15738874 ATGCCAAC-ATCCCAGACGTGGTCTTACACGAAAACACATATCG
1 ATGCC-ACTGTCCCAGACGTGGTCTTACACGTAAACACATATCG
15738917 GAATCCTATG
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
42 1 0.01
43 69 0.95
44 3 0.04
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACGTGGTCTTACACGTAAACACATATCG
Found at i:15741887 original size:92 final size:92
Alignment explanation
Indices: 15741777--15742541 Score: 1244
Period size: 92 Copynumber: 8.3 Consensus size: 92
15741767 GTTTTATACA
* * * *
15741777 TTGCCGAATTAATTCGTATATAATTATACATTGCTAAAATTTATTTGTATATGGTTATATATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
*
15741842 CGAAATTGATTTGTATATAAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
* *
15741869 TTGTCAAATTGATTCGTATATGATTATACATTTG-TGAAATTTATTTGTATATGGTTATACATTA
1 TTGCCGAATTGATTCGTATATGATTATACA-TTGCTGAAATTTATTTGTATATGGTTATACATTA
*
15741933 TCGAAATTGATTTGTAAATGAAGATAAG
65 TCGAAATTGATTTGTATATGAAGATAAG
* *
15741961 TTGTCGAATTGATTCGTATATAATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
15742026 CGAAATTGATTTGTATATGAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
*
15742053 TTGCCGAATTGATTCGTATATGATTATACTTTGCTGAAATTTATTTGTATATGGTTATACATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
* *
15742118 CAAAATTGATTTGTATATGAAGATAAA
66 CGAAATTGATTTGTATATGAAGATAAG
* * *
15742145 TTGCTGAATTGATTCGTATATGATTATACTTTGCTGAAATATATTTGTATATGGTTATACATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
15742210 CGAAATTGATTTGTATATGAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
* * * *
15742237 TTGTCGAATTGATTCGTATATGATTAGACATTGCTGAAATTTATCTATATATGGTTATACATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
*
15742302 CGAAATTGATTTGTAAATGAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
* * * *
15742329 TTGCCGAATTGATTCGTATATAATTATGCATTGCTAAAATTTATTTGTATATGGTTATGCATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
15742394 CGAAATTGATTTGTATATGAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
* * *
15742421 TTGCCGAATTGATTCGTATATGATTATACTTTGTTAAAATTTATTTGTATATGGTTATACATTAT
1 TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
15742486 CGAAATTGATTTGTATATGAAGATAAG
66 CGAAATTGATTTGTATATGAAGATAAG
*
15742513 TTGCCGAATTTGATTCGTATATGAATATA
1 TTGCCGAA-TTGATTCGTATATGATTATA
15742542 TATATTGTTG
Statistics
Matches: 627, Mismatches: 43, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
91 3 0.00
92 602 0.96
93 22 0.04
ACGTcount: A:0.34, C:0.07, G:0.16, T:0.43
Consensus pattern (92 bp):
TTGCCGAATTGATTCGTATATGATTATACATTGCTGAAATTTATTTGTATATGGTTATACATTAT
CGAAATTGATTTGTATATGAAGATAAG
Found at i:15745762 original size:42 final size:42
Alignment explanation
Indices: 15745716--15745798 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 42
15745706 TTTCTGTCAC
*
15745716 ACGGTCACGTATCTCTA-TCACACGAGCGTATGTTTTAGCCAT
1 ACGGTCACGTATCTC-AGCCACACGAGCGTATGTTTTAGCCAT
* ** *
15745758 ACGGTTATTTATCTCAGCCACACGAGCGTGTGTTTTAGCCA
1 ACGGTCACGTATCTCAGCCACACGAGCGTATGTTTTAGCCA
15745799 CACGACCGTG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
41 1 0.03
42 34 0.97
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.31
Consensus pattern (42 bp):
ACGGTCACGTATCTCAGCCACACGAGCGTATGTTTTAGCCAT
Found at i:15746919 original size:25 final size:21
Alignment explanation
Indices: 15746872--15746915 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
15746862 AACATTACCT
15746872 AACTGCTTTAGTTTTAAGAAA
1 AACTGCTTTAGTTTTAAGAAA
15746893 AACTGCTTTAGTTTTAAGAAA
1 AACTGCTTTAGTTTTAAGAAA
15746914 AA
1 AA
15746916 AAAAATGCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.36
Consensus pattern (21 bp):
AACTGCTTTAGTTTTAAGAAA
Found at i:15749092 original size:23 final size:23
Alignment explanation
Indices: 15749066--15749164 Score: 144
Period size: 23 Copynumber: 4.3 Consensus size: 23
15749056 ATAAGTGCCA
**
15749066 CACTGATATGTAGCTAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
15749089 CACTGATACGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
15749112 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
15749135 CACTGATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
15749158 CACTGAT
1 CACTGAT
15749165 CAATAACACT
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 67 1.00
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.23
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:15749133 original size:46 final size:46
Alignment explanation
Indices: 15749066--15749163 Score: 160
Period size: 46 Copynumber: 2.1 Consensus size: 46
15749056 ATAAGTGCCA
* *
15749066 CACTGATATGTAGCTAAAGCTACCACTGATACGTAGCCGTAGCTAC
1 CACTGAAATGTAGCCAAAGCTACCACTGATACGTAGCCGTAGCTAC
* *
15749112 CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
1 CACTGAAATGTAGCCAAAGCTACCACTGATACGTAGCCGTAGCTAC
15749158 CACTGA
1 CACTGA
15749164 TCAATAACAC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
CACTGAAATGTAGCCAAAGCTACCACTGATACGTAGCCGTAGCTAC
Found at i:15753063 original size:24 final size:24
Alignment explanation
Indices: 15753031--15753077 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
15753021 CTAAATTTAT
*
15753031 AACACTTTCCTTTC-CTTTCTCTTC
1 AACACTTTCC-ATCACTTTCTCTTC
*
15753055 AACATTTTCCATCACTTTCTCTT
1 AACACTTTCCATCACTTTCTCTT
15753078 ATTTCCCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 18 0.90
ACGTcount: A:0.17, C:0.34, G:0.00, T:0.49
Consensus pattern (24 bp):
AACACTTTCCATCACTTTCTCTTC
Found at i:15757202 original size:102 final size:102
Alignment explanation
Indices: 15757026--15757370 Score: 385
Period size: 102 Copynumber: 3.4 Consensus size: 102
15757016 TATCGATGAA
* * * *
15757026 CACGTGTGTAGTACTGTGTGAAAGCTACTACGTGTATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTATTGTGTGAAGGCTACTACGTGAATCGAAAAATGATGGTCACATGTGTAGTAC
15757091 TAAGTGAAGGCTACAATGTGTACC-AAGAAGCTTTGGT
66 TAAGTGAAGGCTACAATGTGTACCGAA-AAGCTTTGGT
*
15757128 CACGTGTGTAGTATTGTGTGAAGGCTACTACGTGAATCGAAAAATGATGGTCACATTTGTAGTAC
1 CACGTGTGTAGTATTGTGTGAAGGCTACTACGTGAATCGAAAAATGATGGTCACATGTGTAGTAC
* *** *
15757193 TAAGTGAAGGCTACTATGTGTACCGAAATTTTTTTGT
66 TAAGTGAAGGCTACAATGTGTACCGAAAAGCTTTGGT
* * * ** *
15757230 CACGTGTGTAGTATTATGTGAAGGCTACTACGTGAACCGTAAAACT--TAATCACGTGTGTAGTA
1 CACGTGTGTAGTATTGTGTGAAGGCTACTACGTGAATCG-AAAAATGATGGTCACATGTGTAGTA
* * * ** * *
15757293 CTATGTAAAGGCTACTACATGAACCGTAAAA-C-TTGAT
65 CTAAGTGAAGGCTACAATGTGTACCG-AAAAGCTTTGGT
*** *
15757330 CACGTGTGTAGTACAATGTGAAGGCTACTACGTGTATCGAA
1 CACGTGTGTAGTATTGTGTGAAGGCTACTACGTGAATCGAA
15757371 TGATAAAAGT
Statistics
Matches: 210, Mismatches: 30, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
99 2 0.01
100 38 0.18
101 34 0.16
102 129 0.61
103 7 0.03
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (102 bp):
CACGTGTGTAGTATTGTGTGAAGGCTACTACGTGAATCGAAAAATGATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACAATGTGTACCGAAAAGCTTTGGT
Found at i:15757298 original size:50 final size:49
Alignment explanation
Indices: 15757026--15757363 Score: 302
Period size: 51 Copynumber: 6.7 Consensus size: 49
15757016 TATCGATGAA
* * * *
15757026 CACGTGTGTAGTACTGTGTGAAAGCTACTACGTGTATCGATAAA-TGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGA-AAACT--TGGT
* * * * *
15757077 CACATGTGTAGTACTAAGTGAAGGCTACAATGTGTACC-AAGAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGAA-AA-C-TTGGT
* * * *
15757128 CACGTGTGTAGTATTGTGTGAAGGCTACTACGTGAATCGAAAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGAAAACT--TGGT
* * * * * ** *
15757179 CACATTTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAAATTTTTTTGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGAAA--ACTTGGT
* **
15757230 CACGTGTGTAGTATTATGTGAAGGCTACTACGTGAACCGTAAAACTTAAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-AAAACTTGGT
* * *
15757280 CACGTGTGTAGTACTATGTAAAGGCTACTACATGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-AAAACTTGGT
*
15757330 CACGTGTGTAGTACAATGTGAAGGCTACTACGTG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
15757364 TATCGAATGA
Statistics
Matches: 233, Mismatches: 44, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
49 2 0.01
50 83 0.36
51 141 0.61
52 5 0.02
53 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (49 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGAAAACTTGGT
Found at i:15759377 original size:670 final size:670
Alignment explanation
Indices: 15758007--15759353 Score: 2333
Period size: 670 Copynumber: 2.0 Consensus size: 670
15757997 AAAATTTTAT
* * *
15758007 GGTAAGAAGTTATATGAGTCTAGTTTTTTTGAAAATTTATG-GATCTTAATTTCAAGTTCTGTAA
1 GGTAAGAAGTTATATCAGTCTAG-TTTTTGGAAAAATTA-GAGATCTTAATTTCAAGTTCTGTAA
* * * * *
15758071 CTTCGGATAAAAATTATTTAGTGACTGTGATGCAGAGAAATAGTTTGCTAGAAATTGAATAGATA
64 CTCCGGATAAAAATTATTTAGTGACTATGACGCAAAGAAACAGTTTGCTAGAAATTGAATAGATA
*
15758136 ATAGATTTATGTATGATAAAAGTTATATTATATATGGTATCATGCTAGAAATTTATTTATCAATT
129 ATAGATTTATGTATGATAAAAATTATATTATATATGGTATCATGCTAGAAATTTATTTATCAATT
15758201 ACATACATACTTAATAAGCTATAAGCTTACTCTTCTTTATTTTTCTCTTGTTTTATAGTGATATT
194 ACATACATACTTAATAAGCTATAAGCTTACTCTTCTTTATTTTTCTCTTGTTTTATAGTGATATT
*
15758266 AATCAGCTCGGGAATTGGACGGGGTCAGAACATCATATACACTATCATCATCATCTTTTGGGTAT
259 AATCAGCTCGGGAATTGGACGGGGTCAGAACATCATACACACTATCATCATCATCTTTTGGGTAT
*
15758331 TTTGCAACAAATACTTTGAAAAATGGCATGTATAGATGACTTAATATAATGTGGTATAAATTTAT
324 TTTGCAACAAATACTTTGAAAAATAGCATGTATAGATGACTTAATATAATGTGGTATAAATTTAT
*
15758396 ATATATATGTATAAAATATTGTTTGGTTTAAAATGTTGGTGTAATTAATTGATAAATTGTTTCCT
389 ACATATATGTATAAAATATTGTTTGGTTTAAAATGTTGGTGTAATTAATTGATAAATTGTTTCCT
* *
15758461 TAAACTATTAACAAAGTAATTAGAATGTTGTGGATGGATAAATTGTGTCTGAACATATAATTGTA
454 TAAACCATTAACAAAGTAATTAAAATGTTGTGGATGGATAAATTGTGTCTGAACATATAATTGTA
15758526 TTTGGTTGAAATATTGAAGTTGTTTGAAATTGTGTTTCGAGAATTTGCAGGAGGAATTGAATGTT
519 TTTGGTTGAAATATTGAAGTTGTTTGAAATTGTGTTTCGAGAATTTGCAGGAGGAATTGAATGTT
* *
15758591 TATGAAAAGAAATTATGTCAAAATTTTTGTAAAAAAAAATTCATATCGTTTGATAACACTTCTTA
584 TATGAAAAGAAATTATATCAAAATTTTTGTAAAAAAAAATTCAGATCGTTTGATAACACTTCTTA
15758656 CTTTGTTTCGATGATGAATACG
649 CTTTGTTTCGATGATGAATACG
* * ** *
15758678 GGTAAGAAGTTATATTAGTCTAGTTTTTGGGAAAATTAGAGATCTTAATTTGGAGTT-TCGTAGC
1 GGTAAGAAGTTATATCAGTCTAGTTTTTGGAAAAATTAGAGATCTTAATTTCAAGTTCT-GTAAC
*
15758742 TCCGGATAAAAATTATTTAGTGACTATGACGCAAAGAAACAGTTTGCTGGAAATTGAATAGATAA
65 TCCGGATAAAAATTATTTAGTGACTATGACGCAAAGAAACAGTTTGCTAGAAATTGAATAGATAA
15758807 TAGATTTATGTATGATAAAAATTATATTATATATGGTATCATGCTAGAAATTTATTTATCAATTA
130 TAGATTTATGTATGATAAAAATTATATTATATATGGTATCATGCTAGAAATTTATTTATCAATTA
*
15758872 CATACATACTTACTAAGCTATAAGCTTACTCTTCTTTATTTTTCTCTTGTTTTATAGTGATATTA
195 CATACATACTTAATAAGCTATAAGCTTACTCTTCTTTATTTTTCTCTTGTTTTATAGTGATATTA
* *
15758937 ATCAGCTCGGGAATTGGACGGGGTCTGAACATCATCCACACTATCATCATCATCTTTTGGGTATT
260 ATCAGCTCGGGAATTGGACGGGGTCAGAACATCATACACACTATCATCATCATCTTTTGGGTATT
* *
15759002 TTGCAACCAATACTTTGAAAAATAGCATGTATAGATGACTTAATGTAATGTGGTATAAA-TT-TA
325 TTGCAACAAATACTTTGAAAAATAGCATGTATAGATGACTTAATATAATGTGGTATAAATTTATA
* *
15759065 CATATATGTATAAAATATTGTTTGGTTTAAAATGTTGGTGTATGTTAATTGATGAATTGTTTCCT
390 CATATATGTATAAAATATTGTTTGGTTTAAAATGTTGGTGTA-ATTAATTGATAAATTGTTTCCT
15759130 TAAACCATTAACAAAGTAATTAAAATGTTGTGGATGGATAAATTGTGTCTGAACATATAATTGTA
454 TAAACCATTAACAAAGTAATTAAAATGTTGTGGATGGATAAATTGTGTCTGAACATATAATTGTA
*
15759195 TTTGGTTGAAATATTGAAGTTGTTTGAAATTGTGTTTCGAGAATTTTCAGGAGGAATTGAATGTT
519 TTTGGTTGAAATATTGAAGTTGTTTGAAATTGTGTTTCGAGAATTTGCAGGAGGAATTGAATGTT
* *
15759260 TATGAAAAGAAATTATATCAACATTTTTGTAAAAAAAATTTCAGATCGTTTGATAACACTTCTTA
584 TATGAAAAGAAATTATATCAAAATTTTTGTAAAAAAAAATTCAGATCGTTTGATAACACTTCTTA
*
15759325 CTTTGTTTCGATGATGAGTACG
649 CTTTGTTTCGATGATGAATACG
15759347 GGTAAGA
1 GGTAAGA
15759354 GGTGTTACAT
Statistics
Matches: 641, Mismatches: 32, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
668 43 0.07
669 240 0.37
670 336 0.52
671 22 0.03
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.39
Consensus pattern (670 bp):
GGTAAGAAGTTATATCAGTCTAGTTTTTGGAAAAATTAGAGATCTTAATTTCAAGTTCTGTAACT
CCGGATAAAAATTATTTAGTGACTATGACGCAAAGAAACAGTTTGCTAGAAATTGAATAGATAAT
AGATTTATGTATGATAAAAATTATATTATATATGGTATCATGCTAGAAATTTATTTATCAATTAC
ATACATACTTAATAAGCTATAAGCTTACTCTTCTTTATTTTTCTCTTGTTTTATAGTGATATTAA
TCAGCTCGGGAATTGGACGGGGTCAGAACATCATACACACTATCATCATCATCTTTTGGGTATTT
TGCAACAAATACTTTGAAAAATAGCATGTATAGATGACTTAATATAATGTGGTATAAATTTATAC
ATATATGTATAAAATATTGTTTGGTTTAAAATGTTGGTGTAATTAATTGATAAATTGTTTCCTTA
AACCATTAACAAAGTAATTAAAATGTTGTGGATGGATAAATTGTGTCTGAACATATAATTGTATT
TGGTTGAAATATTGAAGTTGTTTGAAATTGTGTTTCGAGAATTTGCAGGAGGAATTGAATGTTTA
TGAAAAGAAATTATATCAAAATTTTTGTAAAAAAAAATTCAGATCGTTTGATAACACTTCTTACT
TTGTTTCGATGATGAATACG
Found at i:15759636 original size:16 final size:16
Alignment explanation
Indices: 15759604--15759637 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
15759594 ACTATTTAAT
*
15759604 AATATCAAAAATTCTC
1 AATATCAAAAATCCTC
*
15759620 AATATCAAAGATCCTC
1 AATATCAAAAATCCTC
15759636 AA
1 AA
15759638 CTAACTTCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.21, G:0.03, T:0.26
Consensus pattern (16 bp):
AATATCAAAAATCCTC
Found at i:15759961 original size:36 final size:36
Alignment explanation
Indices: 15759902--15759974 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
15759892 CACTCATATT
* * *
15759902 CCAACGAATAGTTTGCACTTTTTACATTTTATATCG
1 CCAACAAATAGTTCGCACATTTTACATTTTATATCG
*
15759938 CCAACAAATCGTTCGCACATTTTACATTTTATATCG
1 CCAACAAATAGTTCGCACATTTTACATTTTATATCG
15759974 C
1 C
15759975 TAGTAAACAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.38
Consensus pattern (36 bp):
CCAACAAATAGTTCGCACATTTTACATTTTATATCG
Found at i:15761742 original size:45 final size:41
Alignment explanation
Indices: 15761668--15761790 Score: 122
Period size: 41 Copynumber: 2.9 Consensus size: 41
15761658 ATATGTGTTC
* *
15761668 TCGTGTAAGACCACGTCTGGGATGATGGCATCGATATATGTAAT
1 TCGTGTAAGACCATGTCTGGGA-CATGGCATCGATAT-T-TAAT
* *
15761712 TACGTGTAAGACCATGTCTAGGACATTGGCATCG-TATTTGAT
1 T-CGTGTAAGACCATGTCTGGGACA-TGGCATCGATATTTAAT
* * *
15761754 TCGTATAAAACCCTGTCTGGGACAGTGGCATCGATAT
1 TCGTGTAAGACCATGTCTGGGACA-TGGCATCGATAT
15761791 GAGATAGCAT
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
41 27 0.40
42 7 0.10
43 1 0.01
44 5 0.07
45 27 0.40
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTGGGACATGGCATCGATATTTAAT
Found at i:15766073 original size:19 final size:20
Alignment explanation
Indices: 15766041--15766080 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
15766031 AATTTTTTTT
* *
15766041 TTAAATTATTTAAAT-TTAA
1 TTAAAATATATAAATATTAA
15766060 TTAAAATATATAAATATTAA
1 TTAAAATATATAAATATTAA
15766080 T
1 T
15766081 ATATTTTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
TTAAAATATATAAATATTAA
Found at i:15767223 original size:7 final size:7
Alignment explanation
Indices: 15767211--15767235 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
15767201 TTAATAATTT
15767211 TTAAATG
1 TTAAATG
15767218 TTAAATG
1 TTAAATG
15767225 TTAAATG
1 TTAAATG
15767232 TTAA
1 TTAA
15767236 TTTAAATAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (7 bp):
TTAAATG
Found at i:15773842 original size:13 final size:13
Alignment explanation
Indices: 15773824--15773853 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
15773814 ATTATTCCCT
15773824 TTCTCTATAATAA
1 TTCTCTATAATAA
*
15773837 TTCTCTATAATAT
1 TTCTCTATAATAA
15773850 TTCT
1 TTCT
15773854 TATTCCCTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.17, G:0.00, T:0.53
Consensus pattern (13 bp):
TTCTCTATAATAA
Found at i:15778247 original size:23 final size:23
Alignment explanation
Indices: 15778195--15778240 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
15778185 CGGAAGGGTG
*
15778195 GAAATTTAAAACTATATTTTTAT
1 GAAAATTAAAACTATATTTTTAT
15778218 GAAAATTAAAA-TATAATTTTTAT
1 GAAAATTAAAACTAT-ATTTTTAT
15778241 TATAATTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 3 0.14
23 18 0.86
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (23 bp):
GAAAATTAAAACTATATTTTTAT
Found at i:15778923 original size:16 final size:16
Alignment explanation
Indices: 15778884--15778923 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
15778874 AATTTTATTT
15778884 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
*
15778901 -AACAATAATTTTAAA
1 TAATAATAATTTTAAA
15778916 TAATAATA
1 TAATAATA
15778924 TTCACTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:15778956 original size:14 final size:14
Alignment explanation
Indices: 15778879--15778967 Score: 76
Period size: 13 Copynumber: 6.4 Consensus size: 14
15778869 ATTCTAATTT
15778879 TATTTTAATAATAA
1 TATTTTAATAATAA
* *
15778893 -ATTTTAAAAACAA
1 TATTTTAATAATAA
15778906 TAATTTTAAATAATAA
1 T-ATTTT-AATAATAA
* * *
15778922 TA-TTCACTAAAAA
1 TATTTTAATAATAA
*
15778935 TA-TTTAATATTAA
1 TATTTTAATAATAA
15778948 TATTTTAATAATAA
1 TATTTTAATAATAA
15778962 CTATTT
1 -TATTT
15778968 ATTACAATTA
Statistics
Matches: 58, Mismatches: 12, Indels: 9
0.73 0.15 0.11
Matches are distributed among these distances:
13 28 0.48
14 12 0.21
15 11 0.19
16 7 0.12
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (14 bp):
TATTTTAATAATAA
Found at i:15781806 original size:19 final size:19
Alignment explanation
Indices: 15781761--15781806 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
15781751 AAATTTTAAG
*
15781761 AAAATT-TTTAAAAATTTT
1 AAAATTATTCAAAAATTTT
*
15781779 ATGAA-TATTCAAAAATTTT
1 A-AAATTATTCAAAAATTTT
15781798 AAAATTATT
1 AAAATTATT
15781807 TTGGAACTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 5
0.73 0.10 0.17
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (19 bp):
AAAATTATTCAAAAATTTT
Found at i:15796879 original size:31 final size:29
Alignment explanation
Indices: 15796807--15796880 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 29
15796797 ACAAAACGAT
* *
15796807 AACATAAGTGACTAAAATGTAATATTTTG
1 AACATAAGTGACTAAAATGTAATATTGTA
15796836 AACATAAGTGACTAAAATGTAAT-TTGAGGTA
1 AACATAAGTGACTAAAATGTAATATT---GTA
*
15796867 AACAAAAGTGACTA
1 AACATAAGTGACTA
15796881 TTTTTGTAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
28 2 0.05
29 23 0.59
31 14 0.36
ACGTcount: A:0.47, C:0.08, G:0.16, T:0.28
Consensus pattern (29 bp):
AACATAAGTGACTAAAATGTAATATTGTA
Found at i:15798783 original size:21 final size:21
Alignment explanation
Indices: 15798758--15798805 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
15798748 GGATGATAAT
*
15798758 ATAAAAT-GAAGATTAATTTAA
1 ATAAAATGGAA-ATTAATTAAA
* *
15798779 GTAAATTGGAAATTAATTAAA
1 ATAAAATGGAAATTAATTAAA
15798800 ATAAAA
1 ATAAAA
15798806 CATGGTTTAT
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.58, C:0.00, G:0.10, T:0.31
Consensus pattern (21 bp):
ATAAAATGGAAATTAATTAAA
Found at i:15808597 original size:26 final size:26
Alignment explanation
Indices: 15808568--15808760 Score: 181
Period size: 27 Copynumber: 7.3 Consensus size: 26
15808558 AGAGGTCAAT
*
15808568 AAATGATCC-AATTACCCCATATGGTA
1 AAATGA-CCGAATTACCCCATAGGGTA
* *
15808594 AAATCACCGAATAACCCCATAGGGTA
1 AAATGACCGAATTACCCCATAGGGTA
* *
15808620 AAATGACCGAATTACCCTCACAGGATA
1 AAATGACCGAATTACCC-CATAGGGTA
* * *
15808647 AAATGACCGAATTACCTCTACAGGATA
1 AAATGACCGAATTACC-CCATAGGGTA
* * *
15808674 AAATGATCGAAATACCCCACAGGGTA
1 AAATGACCGAATTACCCCATAGGGTA
* * *
15808700 AAATAACCGAAATATCCCTATAGGGTA
1 AAATGACCGAATTA-CCCCATAGGGTA
* * *
15808727 AAATGACCAAAATAATCCCATAGGGTA
1 AAATGACC-GAATTACCCCATAGGGTA
15808754 AAATGAC
1 AAATGAC
15808761 TATTATGACC
Statistics
Matches: 140, Mismatches: 22, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
25 2 0.01
26 55 0.39
27 79 0.56
28 4 0.03
ACGTcount: A:0.43, C:0.22, G:0.15, T:0.20
Consensus pattern (26 bp):
AAATGACCGAATTACCCCATAGGGTA
Found at i:15808695 original size:53 final size:52
Alignment explanation
Indices: 15808580--15808760 Score: 191
Period size: 53 Copynumber: 3.4 Consensus size: 52
15808570 ATGATCCAAT
* * * * * *
15808580 TACCCCATATGGTAAAATCACCGAATAACCCCATAGGGTAAAATGACCGAAT
1 TACCCCACAGGGTAAAATGACCGAATTACCCTATAGGGTAAAATGACCGAAA
* * * *
15808632 TACCCTCACAGGATAAAATGACCGAATTACCTCTACAGGATAAAATGATCGAAA
1 TACCC-CACAGGGTAAAATGACCGAATTACC-CTATAGGGTAAAATGACCGAAA
* * *
15808686 TACCCCACAGGGTAAAATAACCGAAATATCCCTATAGGGTAAAATGACCAAAA
1 TACCCCACAGGGTAAAATGACCGAATTA-CCCTATAGGGTAAAATGACCGAAA
* *
15808739 TAATCCCATAGGGTAAAATGAC
1 T-ACCCCACAGGGTAAAATGAC
15808761 TATTATGACC
Statistics
Matches: 105, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
52 5 0.05
53 59 0.56
54 41 0.39
ACGTcount: A:0.43, C:0.23, G:0.15, T:0.19
Consensus pattern (52 bp):
TACCCCACAGGGTAAAATGACCGAATTACCCTATAGGGTAAAATGACCGAAA
Done.