Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62769430
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1067035 characters in sequence are not A, C, G, or T
File 77 of 206
Found at i:21966556 original size:21 final size:21
Alignment explanation
Indices: 21966494--21966558 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
21966484 CACATATGTG
21966494 CAATTTAGGGGTACCGAAGTA
1 CAATTTAGGGGTACCGAAGTA
* * ** *
21966515 CAA-ATAGGGGCACTTATGTA
1 CAATTTAGGGGTACCGAAGTA
*
21966535 CAATTTAGGGATACCGAAGTA
1 CAATTTAGGGGTACCGAAGTA
21966556 CAA
1 CAA
21966559 ACAGGGGCAC
Statistics
Matches: 32, Mismatches: 11, Indels: 2
0.71 0.24 0.04
Matches are distributed among these distances:
20 15 0.47
21 17 0.53
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (21 bp):
CAATTTAGGGGTACCGAAGTA
Found at i:21968566 original size:27 final size:27
Alignment explanation
Indices: 21968536--21968608 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
21968526 AGTCAGCCAC
21968536 AAAGGCTTACATTTTATGGATCACCAA
1 AAAGGCTTACATTTTATGGATCACCAA
* * * *
21968563 AAAGGCTTCCATTTTTTAGATCACCAT
1 AAAGGCTTACATTTTATGGATCACCAA
*
21968590 AAAGG-TTTCAATTTTATGG
1 AAAGGCTTAC-ATTTTATGG
21968609 GGTGTTCACA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 3 0.08
27 35 0.92
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (27 bp):
AAAGGCTTACATTTTATGGATCACCAA
Found at i:21974686 original size:57 final size:60
Alignment explanation
Indices: 21974565--21974705 Score: 146
Period size: 57 Copynumber: 2.4 Consensus size: 60
21974555 TTTCTTATAC
* * * * *
21974565 ATTTTAA-TTTTAATTTGAATTTTAGATTTTGTTTTAAAGTTCAACTTATGTTTTAAACTTAA
1 ATTTTAAGTTTTAATTAGATTTTTAGA--TTGTTTT-AAGCTCAACTTATATTTTAAACCTAA
*
21974627 ATTTTAAGTTTTAATTAGATTTTTAGA-TGTTTT-AGCTCAA-TTATATTTTAAGCCTAA
1 ATTTTAAGTTTTAATTAGATTTTTAGATTGTTTTAAGCTCAACTTATATTTTAAACCTAA
* * *
21974684 ATTTGAAGCTCTAATTAGATTT
1 ATTTTAAGTTTTAATTAGATTT
21974706 AAAATTCTTG
Statistics
Matches: 69, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
57 33 0.48
58 6 0.09
60 6 0.09
62 7 0.10
63 17 0.25
ACGTcount: A:0.32, C:0.06, G:0.10, T:0.52
Consensus pattern (60 bp):
ATTTTAAGTTTTAATTAGATTTTTAGATTGTTTTAAGCTCAACTTATATTTTAAACCTAA
Found at i:21974925 original size:18 final size:19
Alignment explanation
Indices: 21974904--21974939 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
21974894 TCAAGTCTAG
21974904 TTAGATTT-TAATTTTAAA
1 TTAGATTTATAATTTTAAA
*
21974922 TTAGATTTATATTTTTAA
1 TTAGATTTATAATTTTAA
21974940 TTCAATTAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (19 bp):
TTAGATTTATAATTTTAAA
Found at i:21974976 original size:98 final size:98
Alignment explanation
Indices: 21974788--21975014 Score: 287
Period size: 98 Copynumber: 2.3 Consensus size: 98
21974778 GTCCTAGCCA
* * *
21974788 TTAGA-TTTTAAGTTTAGCTAGATTTTAAGGTTAAATTGGATTTTAGATTTTAAATCCAATTAGA
1 TTAGATTTTTAAGTCTAGTTAGATTTTAAGGTTAAATTAGATTTTAGATTTTAAATCCAATTAGA
* *
21974852 TTGTAAGTTTAAATTTTAGGATTAAATTAGATT
66 TTATAAGTTTAAATTCTAGGATTAAATTAGATT
** * * *
21974885 TTAGATTTTTCAAGTCTAGTTAGATTTTAATTTTAAATTAGA-TTTATATTTTTAATTCAATTAG
1 TTAGATTTTT-AAGTCTAGTTAGATTTTAAGGTTAAATTAGATTTTAGATTTTAAATCCAATTAG
* *
21974949 GTTATAAGTTTAAATTCTAGGTTTAAATTAGATT
65 ATTATAAGTTTAAATTCTAGGATTAAATTAGATT
* *
21974983 TTATATTTTTTTAAGTGTAGTTAGATTTTAAG
1 TTAGA--TTTTTAAGTCTAGTTAGATTTTAAG
21975015 TTAGAAATCT
Statistics
Matches: 111, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
97 5 0.05
98 57 0.51
99 44 0.40
100 5 0.05
ACGTcount: A:0.33, C:0.03, G:0.14, T:0.50
Consensus pattern (98 bp):
TTAGATTTTTAAGTCTAGTTAGATTTTAAGGTTAAATTAGATTTTAGATTTTAAATCCAATTAGA
TTATAAGTTTAAATTCTAGGATTAAATTAGATT
Found at i:21975217 original size:18 final size:17
Alignment explanation
Indices: 21975176--21975214 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
21975166 ATTTTTCAAA
*
21975176 ATTTTAAGTTTAATTAG
1 ATTTTAAGCTTAATTAG
21975193 ATTTTAAGCTTAACTT-G
1 ATTTTAAGCTTAA-TTAG
21975210 ATTTT
1 ATTTT
21975215 TAATAGATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 18 0.90
18 2 0.10
ACGTcount: A:0.31, C:0.05, G:0.10, T:0.54
Consensus pattern (17 bp):
ATTTTAAGCTTAATTAG
Found at i:21978230 original size:154 final size:154
Alignment explanation
Indices: 21977950--21978245 Score: 412
Period size: 154 Copynumber: 1.9 Consensus size: 154
21977940 TTGATAATTT
* *
21977950 TTAGCATGTTGGAATGATTAAATTGTATTGAAATTAGTCGTAGTTGTTCTAGCAATGAATGTGGC
1 TTAGCATGTTGGAATGATTAAATTGTATTGAAATTAGTCGTAGTTGCTCTAGCAACGAATGTGGC
* * *
21978015 ATCCCGTAGCTCAAACCCAACGATTAGGTCGGGTATGGGGTGTTACATTGCTGATCATTTTATGT
66 ATACCGTAGCTCAAACCCAACAATTAGGTCAGGTATGGGGTGTTACATTGCTGATCATTTTATGT
21978080 GGTAATAGATTATGAAGTGTATTG
131 GGTAATAGATTATGAAGTGTATTG
* * *
21978104 TTAGCATGTTGGAGTGATTAAATTGTATTGAAATTAGTTGTAGTTGCTCTAGTAACGAATGTGGC
1 TTAGCATGTTGGAATGATTAAATTGTATTGAAATTAGTCGTAGTTGCTCTAGCAACGAATGTGGC
** ** * ** * * * *
21978169 ATATTGTAGCTCGGACTCGGCAATTGGGTTAGGTATGGGGTGTTATATTGCTGGTCATTTTATGT
66 ATACCGTAGCTCAAACCCAACAATTAGGTCAGGTATGGGGTGTTACATTGCTGATCATTTTATGT
*
21978234 GGTAGTAGATTA
131 GGTAATAGATTA
21978246 AGCATGAGAA
Statistics
Matches: 122, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
154 122 1.00
ACGTcount: A:0.26, C:0.10, G:0.27, T:0.37
Consensus pattern (154 bp):
TTAGCATGTTGGAATGATTAAATTGTATTGAAATTAGTCGTAGTTGCTCTAGCAACGAATGTGGC
ATACCGTAGCTCAAACCCAACAATTAGGTCAGGTATGGGGTGTTACATTGCTGATCATTTTATGT
GGTAATAGATTATGAAGTGTATTG
Found at i:21981860 original size:9 final size:9
Alignment explanation
Indices: 21981843--21981879 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
21981833 TGAGTTTTCG
21981843 AATTCGAAT
1 AATTCGAAT
*
21981852 AACTCGAAT
1 AATTCGAAT
*
21981861 AATTTGAAT
1 AATTCGAAT
21981870 AATTCGAAT
1 AATTCGAAT
21981879 A
1 A
21981880 TCAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:21982126 original size:30 final size:31
Alignment explanation
Indices: 21982092--21982151 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
21982082 AAACATTTTA
*
21982092 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
* *
21982122 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
21982152 TCCCACCTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:21982834 original size:5 final size:5
Alignment explanation
Indices: 21982817--21982847 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
21982807 GAACAAATAT
*
21982817 ATTCG ATTTG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG A
21982848 ATTCCATCTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (5 bp):
ATTCG
Found at i:21983304 original size:20 final size:19
Alignment explanation
Indices: 21983261--21983344 Score: 62
Period size: 20 Copynumber: 4.3 Consensus size: 19
21983251 AAATTAAGAT
* * *
21983261 AAAATGATTTTAACGAAGGC
1 AAAATGATTTCAAC-ATGTC
*
21983281 AAAATGATTTCAACCAAT-TT
1 AAAATGATTTCAA-C-ATGTC
* *
21983301 AAAATAATTTTAACATGTC
1 AAAATGATTTCAACATGTC
*
21983320 AAAATGATTTCAAACAAGTC
1 AAAATGATTTC-AACATGTC
21983340 AAAAT
1 AAAAT
21983345 TGCTCTAGGC
Statistics
Matches: 50, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
18 2 0.04
19 11 0.22
20 35 0.70
21 2 0.04
ACGTcount: A:0.49, C:0.12, G:0.10, T:0.30
Consensus pattern (19 bp):
AAAATGATTTCAACATGTC
Found at i:21983344 original size:39 final size:40
Alignment explanation
Indices: 21983261--21983344 Score: 107
Period size: 39 Copynumber: 2.1 Consensus size: 40
21983251 AAATTAAGAT
* * * *
21983261 AAAATGATTTTAACGAAGGCAAAATGATTTCAACCAATTT
1 AAAATAATTTTAACGAAGGCAAAATGATTTCAAACAAGTC
* *
21983301 AAAATAATTTTAAC-ATGTCAAAATGATTTCAAACAAGTC
1 AAAATAATTTTAACGAAGGCAAAATGATTTCAAACAAGTC
21983340 AAAAT
1 AAAAT
21983345 TGCTCTAGGC
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
39 25 0.66
40 13 0.34
ACGTcount: A:0.49, C:0.12, G:0.10, T:0.30
Consensus pattern (40 bp):
AAAATAATTTTAACGAAGGCAAAATGATTTCAAACAAGTC
Found at i:21987580 original size:25 final size:25
Alignment explanation
Indices: 21987552--21987609 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 25
21987542 GTTACTAATT
21987552 TCAGCTCT-TATGAGCTTACCGATAC
1 TCAGCT-TGTATGAGCTTACCGATAC
* *
21987577 TCAGCTTGTATGAGCTTACCGTTAT
1 TCAGCTTGTATGAGCTTACCGATAC
21987602 TCAGCTTG
1 TCAGCTTG
21987610 GAGGAGCTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 1 0.03
25 29 0.97
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (25 bp):
TCAGCTTGTATGAGCTTACCGATAC
Found at i:21987616 original size:25 final size:25
Alignment explanation
Indices: 21987563--21987632 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 25
21987553 CAGCTCTTAT
* * * *
21987563 GAGCTTACCGATACTCAGCTTGTAT
1 GAGCTTACCGTTATTCAGCTTGGAG
21987588 GAGCTTACCGTTATTCAGCTTGGAG
1 GAGCTTACCGTTATTCAGCTTGGAG
* **
21987613 GAGCTGACATTTATTCAGCT
1 GAGCTTACCGTTATTCAGCT
21987633 CGAAGAAGCT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.33
Consensus pattern (25 bp):
GAGCTTACCGTTATTCAGCTTGGAG
Found at i:21994427 original size:20 final size:19
Alignment explanation
Indices: 21994402--21994464 Score: 63
Period size: 20 Copynumber: 3.2 Consensus size: 19
21994392 ACAATTTTAA
*
21994402 AACCAAGATAAAATTATTTT
1 AACCAAG-TAAAATCATTTT
* * *
21994422 AACCAAGTCATAATGATTTC
1 AACCAAGT-AAAATCATTTT
21994442 AACCAAGTTAAAATCATTTT
1 AACCAAG-TAAAATCATTTT
21994462 AAC
1 AAC
21994465 ATATCAAAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
19 1 0.03
20 33 0.94
21 1 0.03
ACGTcount: A:0.46, C:0.16, G:0.06, T:0.32
Consensus pattern (19 bp):
AACCAAGTAAAATCATTTT
Found at i:21994482 original size:40 final size:40
Alignment explanation
Indices: 21994402--21994489 Score: 108
Period size: 40 Copynumber: 2.2 Consensus size: 40
21994392 ACAATTTTAA
* * *
21994402 AACCAAGATAAAATTATTTTAACCAAGTCATAATGATTTC
1 AACCAAGTTAAAATCATTTTAACCAAGTCAAAATGATTTC
21994442 AACCAAGTTAAAATCATTTTAA-CATA-TCAAAATGATTTTC
1 AACCAAGTTAAAATCATTTTAACCA-AGTCAAAATGA-TTTC
*
21994482 AAACAAGT
1 AACCAAGT
21994490 CAGAATTACT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
39 10 0.24
40 32 0.76
ACGTcount: A:0.47, C:0.15, G:0.07, T:0.32
Consensus pattern (40 bp):
AACCAAGTTAAAATCATTTTAACCAAGTCAAAATGATTTC
Found at i:22004362 original size:33 final size:33
Alignment explanation
Indices: 22004320--22004412 Score: 123
Period size: 33 Copynumber: 2.8 Consensus size: 33
22004310 TCATGATGCC
* *
22004320 AAGCATTATTATGGGGATGGACCCTTCCTATTT
1 AAGCATTATTATCGGGATGAACCCTTCCTATTT
* * *
22004353 AAGCATTATTATCGAGATGAATCCGTCCTATTT
1 AAGCATTATTATCGGGATGAACCCTTCCTATTT
* *
22004386 AGGCATTATTATTGGGATGAACCCTTC
1 AAGCATTATTATCGGGATGAACCCTTC
22004413 ATGATGCCAT
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 50 1.00
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.35
Consensus pattern (33 bp):
AAGCATTATTATCGGGATGAACCCTTCCTATTT
Found at i:22031243 original size:26 final size:26
Alignment explanation
Indices: 22031190--22031244 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
22031180 TCAGTACAGT
* * **
22031190 GTGGGCCTTAGCCCATTATGGTAACA
1 GTGGGCCTAAGCCCAATACAGTAACA
*
22031216 GTGGGCCTAAGCCCAATACAGTATCA
1 GTGGGCCTAAGCCCAATACAGTAACA
22031242 GTG
1 GTG
22031245 TGGTGCATAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (26 bp):
GTGGGCCTAAGCCCAATACAGTAACA
Found at i:22031694 original size:26 final size:26
Alignment explanation
Indices: 22031663--22031749 Score: 129
Period size: 26 Copynumber: 3.3 Consensus size: 26
22031653 ACCCTTCGGG
*
22031663 GATAATTTACCCATTGAGGGTATTTT
1 GATAATTTACCCATTGAGGGTATTTC
* ** *
22031689 GGTAATTTATGCATTGAGAGTATTTC
1 GATAATTTACCCATTGAGGGTATTTC
22031715 GATAATTTACCCATTGAGGGTATTTC
1 GATAATTTACCCATTGAGGGTATTTC
22031741 GATAATTTA
1 GATAATTTA
22031750 GGACCATTAC
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (26 bp):
GATAATTTACCCATTGAGGGTATTTC
Found at i:22038476 original size:27 final size:27
Alignment explanation
Indices: 22038444--22038495 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
22038434 GTACAATATA
*
22038444 TGTGGCAAAGTCACCAGTAACAGTAAT
1 TGTGGCAAAGCCACCAGTAACAGTAAT
* *
22038471 TGTGGCAGAGCCACCAGTATCAGTA
1 TGTGGCAAAGCCACCAGTAACAGTA
22038496 CTTCCTCCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.21
Consensus pattern (27 bp):
TGTGGCAAAGCCACCAGTAACAGTAAT
Found at i:22038729 original size:26 final size:26
Alignment explanation
Indices: 22038675--22038815 Score: 174
Period size: 26 Copynumber: 5.4 Consensus size: 26
22038665 TACCCTTTGG
** *
22038675 GGGTATTTTAGTAATTTTACCCTTCGA
1 GGGTATTTCGGTAA-TTTACCCATCGA
*
22038702 GGGTATTTCGGTAATTTACCCATTGA
1 GGGTATTTCGGTAATTTACCCATCGA
* ** *
22038728 GGTTATTTTTGTAATTTACCTATCGA
1 GGGTATTTCGGTAATTTACCCATCGA
* *
22038754 GGGTATTTTGCTAATTTACCCATCGA
1 GGGTATTTCGGTAATTTACCCATCGA
*
22038780 GGGTATTTCAGTAATTTACCCATCGA
1 GGGTATTTCGGTAATTTACCCATCGA
22038806 GGGTATTTCG
1 GGGTATTTCG
22038816 ATAACTTAGA
Statistics
Matches: 97, Mismatches: 17, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
26 85 0.88
27 12 0.12
ACGTcount: A:0.23, C:0.16, G:0.21, T:0.41
Consensus pattern (26 bp):
GGGTATTTCGGTAATTTACCCATCGA
Found at i:22038761 original size:52 final size:52
Alignment explanation
Indices: 22038675--22038815 Score: 194
Period size: 52 Copynumber: 2.7 Consensus size: 52
22038665 TACCCTTTGG
* *
22038675 GGGTATTTTAGTAATTTTACCCT-TCGAGGGTATTTCGGTAATTTACCCATTGA
1 GGGTATTTTAGTAA-TTTA-CCTATCGAGGGTATTTCGCTAATTTACCCATCGA
* * *
22038728 GGTTATTTTTGTAATTTACCTATCGAGGGTATTTTGCTAATTTACCCATCGA
1 GGGTATTTTAGTAATTTACCTATCGAGGGTATTTCGCTAATTTACCCATCGA
* *
22038780 GGGTATTTCAGTAATTTACCCATCGAGGGTATTTCG
1 GGGTATTTTAGTAATTTACCTATCGAGGGTATTTCG
22038816 ATAACTTAGA
Statistics
Matches: 77, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
51 3 0.04
52 62 0.81
53 12 0.16
ACGTcount: A:0.23, C:0.16, G:0.21, T:0.41
Consensus pattern (52 bp):
GGGTATTTTAGTAATTTACCTATCGAGGGTATTTCGCTAATTTACCCATCGA
Found at i:22044708 original size:24 final size:24
Alignment explanation
Indices: 22044643--22044761 Score: 152
Period size: 25 Copynumber: 4.9 Consensus size: 24
22044633 GCATCCCCGA
22044643 AACAATGGAAAGGTTGAAAAGGAT
1 AACAATGGAAAGGTTGAAAAGGAT
*
22044667 AACAAATGGAGAA-TTTGAAAAGGAT
1 AAC-AATGGA-AAGGTTGAAAAGGAT
*
22044692 AACAATGGAAAGGTTGAAAATGAT
1 AACAATGGAAAGGTTGAAAAGGAT
*
22044716 AACAAATGGAGAA-GTTGAAAATGAT
1 AAC-AATGGA-AAGGTTGAAAAGGAT
*
22044741 AACAATGGAAAGATTGAAAAG
1 AACAATGGAAAGGTTGAAAAG
22044762 TATAGCAAGG
Statistics
Matches: 84, Mismatches: 5, Indels: 12
0.83 0.05 0.12
Matches are distributed among these distances:
23 4 0.05
24 35 0.42
25 41 0.49
26 4 0.05
ACGTcount: A:0.52, C:0.04, G:0.25, T:0.18
Consensus pattern (24 bp):
AACAATGGAAAGGTTGAAAAGGAT
Found at i:22044717 original size:49 final size:49
Alignment explanation
Indices: 22044643--22044761 Score: 202
Period size: 49 Copynumber: 2.4 Consensus size: 49
22044633 GCATCCCCGA
*
22044643 AACAATGGAAAGGTTGAAAAGGATAACAAATGGAGAATTTGAAAAGGAT
1 AACAATGGAAAGGTTGAAAAGGATAACAAATGGAGAAGTTGAAAAGGAT
* *
22044692 AACAATGGAAAGGTTGAAAATGATAACAAATGGAGAAGTTGAAAATGAT
1 AACAATGGAAAGGTTGAAAAGGATAACAAATGGAGAAGTTGAAAAGGAT
*
22044741 AACAATGGAAAGATTGAAAAG
1 AACAATGGAAAGGTTGAAAAG
22044762 TATAGCAAGG
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 65 1.00
ACGTcount: A:0.52, C:0.04, G:0.25, T:0.18
Consensus pattern (49 bp):
AACAATGGAAAGGTTGAAAAGGATAACAAATGGAGAAGTTGAAAAGGAT
Found at i:22046503 original size:51 final size:50
Alignment explanation
Indices: 22046395--22046574 Score: 209
Period size: 51 Copynumber: 3.6 Consensus size: 50
22046385 GATACACGTG
* * * *
22046395 GTAGCCTTCACATAGTACTACACACGTGATCAAACTTTCCGGTTCACATA
1 GTAGCCTGCACATAGTACTACACACGTGACCAAACCTTCCGGTACACATA
22046445 GTAGCCTGCACATAGTACTACACACGTGACCAAAGCCTTCCGGTACACATA
1 GTAGCCTGCACATAGTACTACACACGTGACCAAA-CCTTCCGGTACACATA
* * * * * *
22046496 GTAGCCTGCACATAATACTACACATGTGACCATTATCTAT-CGATACACGTA
1 GTAGCCTGCACATAGTACTACACACGTGACCA-AACCT-TCCGGTACACATA
* * *
22046547 GTAGCCTGTACTTAGTACCACACACGTG
1 GTAGCCTGCACATAGTACTACACACGTG
22046575 TTTATAGGCA
Statistics
Matches: 112, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
50 32 0.29
51 78 0.70
52 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (50 bp):
GTAGCCTGCACATAGTACTACACACGTGACCAAACCTTCCGGTACACATA
Found at i:22048189 original size:50 final size:51
Alignment explanation
Indices: 22048012--22048195 Score: 185
Period size: 51 Copynumber: 3.6 Consensus size: 51
22048002 TATAAACACG
* * * * * * *
22048012 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-GATAGATAATGTTCACA
1 TGTGTAGTACTATGTGCAGGCTACTAAGTGTAACAGAAAGCT-TTGATCACA
* * * * *
22048063 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGAAGGCTTTGGTCACG
1 TGTGTAGTACTATGTGCAGGCTACTAAGTGTAACAGAAAGCTTTGATCACA
*
22048114 TGTGTAGTACTATGTGCAGGCTACTAAGTG-AACAGGAAAG-TTTGATCACC
1 TGTGTAGTACTATGTGCAGGCTACTAAGTGTAACA-GAAAGCTTTGATCACA
* * *
22048164 TGTGTAGTACTATGTGAAGACTACTATGTGTA
1 TGTGTAGTACTATGTGCAGGCTACTAAGTGTA
22048196 TTGAATGATA
Statistics
Matches: 113, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
50 38 0.34
51 71 0.63
52 4 0.04
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (51 bp):
TGTGTAGTACTATGTGCAGGCTACTAAGTGTAACAGAAAGCTTTGATCACA
Found at i:22059446 original size:51 final size:49
Alignment explanation
Indices: 22059317--22059509 Score: 215
Period size: 51 Copynumber: 3.8 Consensus size: 49
22059307 ATTATTATCA
* * * * *
22059317 TTCGATACACGTAGTAGCCTTCACATAGTACTACTCACGTGATCAAACTT
1 TTCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAAC-C
* *
22059367 TTCGGTTCACGTAGTAGCCTGCACATAGTACTACACACGTAACCAAAGCC
1 TTCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAA-CC
* * * *
22059417 TTCCGGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCATTATC
1 TT-CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA-AACC
* * *
22059468 TATCGATACATGTAGTAGCCTGCACTTAGTACTACACACGTG
1 T-TCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTG
22059510 TTTATAGGCA
Statistics
Matches: 121, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
50 43 0.36
51 76 0.63
52 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (49 bp):
TTCGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACC
Found at i:22065065 original size:12 final size:11
Alignment explanation
Indices: 22065048--22065094 Score: 58
Period size: 12 Copynumber: 4.0 Consensus size: 11
22065038 TTAAGTTAAA
*
22065048 TAAAATATATGT
1 TAAAAT-TAAGT
22065060 TAAAATTAAGT
1 TAAAATTAAGT
22065071 TAATAATTAAGT
1 TAA-AATTAAGT
22065083 TAAAATGTAAGT
1 TAAAAT-TAAGT
22065095 ACATAAAAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
11 10 0.31
12 22 0.69
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.38
Consensus pattern (11 bp):
TAAAATTAAGT
Found at i:22065969 original size:45 final size:44
Alignment explanation
Indices: 22065875--22065992 Score: 121
Period size: 45 Copynumber: 2.6 Consensus size: 44
22065865 CATTGTTTGA
* * * *
22065875 GAAAAGGAAAAGACCATTATTGAAAGAAATCATGGTATTATAATC
1 GAAAA-GAAAAGACCATGATTGAAAGATATCATGGCACTATAATC
* *
22065920 GAAAAGAAAAATACCATGATTGAAAGATATCATGGCACTA-AATTT
1 GAAAAG-AAAAGACCATGATTGAAAGATATCATGGCACTATAA-TC
* * *
22065965 GAAAAGGAAAGACCAAGGTTGAAAGATA
1 GAAAAGAAAAGACCATGATTGAAAGATA
22065993 CTATGACATC
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
44 21 0.34
45 40 0.66
ACGTcount: A:0.50, C:0.09, G:0.19, T:0.21
Consensus pattern (44 bp):
GAAAAGAAAAGACCATGATTGAAAGATATCATGGCACTATAATC
Found at i:22084129 original size:112 final size:112
Alignment explanation
Indices: 22083949--22084174 Score: 418
Period size: 112 Copynumber: 2.0 Consensus size: 112
22083939 CGCAAAAAAA
22083949 AAATCATGCATTATATATGATATATTTTTTTGTCATATATAATTTATGAAATGATATTTCAGACA
1 AAATCATGCATTATATATGATATATTTTTTTGTCATATATAATTTATGAAATGATATTTCAGACA
22084014 TAGCTAAGTTATTGAAAGAAAATAATTATTTTTTCTCAAATCCGTATT
66 TAGCTAAGTTATTGAAAGAAAATAATTA-TTTTTCTCAAATCCGTATT
*
22084062 AAATCATGCATTATATATGATAT-TTTTTTTGTCATATATAATTTATGACATGATATTTCAGACA
1 AAATCATGCATTATATATGATATATTTTTTTGTCATATATAATTTATGAAATGATATTTCAGACA
*
22084126 TAGCTAAGTTATTGAAAGAAAATAATTATTTTTCTCAAATCCGTGTT
66 TAGCTAAGTTATTGAAAGAAAATAATTATTTTTCTCAAATCCGTATT
22084173 AA
1 AA
22084175 TAATTTATTA
Statistics
Matches: 111, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
111 20 0.18
112 68 0.61
113 23 0.21
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.43
Consensus pattern (112 bp):
AAATCATGCATTATATATGATATATTTTTTTGTCATATATAATTTATGAAATGATATTTCAGACA
TAGCTAAGTTATTGAAAGAAAATAATTATTTTTCTCAAATCCGTATT
Found at i:22085902 original size:23 final size:22
Alignment explanation
Indices: 22085858--22085902 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
22085848 TATAAAAACT
*
22085858 AAACCCCAAAATTTGAAAACAA
1 AAACCCCAAAACTTGAAAACAA
22085880 AAACCCTCAAAACTT-AAACACAA
1 AAACCC-CAAAACTTGAAA-ACAA
22085903 TATTATCTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.58, C:0.27, G:0.02, T:0.13
Consensus pattern (22 bp):
AAACCCCAAAACTTGAAAACAA
Found at i:22089391 original size:19 final size:21
Alignment explanation
Indices: 22089346--22089394 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
22089336 TCACCCTCAA
22089346 TCTCTTTTTGCTCTTTTTCAT
1 TCTCTTTTTGCTCTTTTTCAT
* *
22089367 TCTCTTTTTTCT-TTTTTGAT
1 TCTCTTTTTGCTCTTTTTCAT
22089387 T-TCTTTTT
1 TCTCTTTTT
22089395 CTGTCTTTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 7 0.27
20 8 0.31
21 11 0.42
ACGTcount: A:0.04, C:0.18, G:0.04, T:0.73
Consensus pattern (21 bp):
TCTCTTTTTGCTCTTTTTCAT
Found at i:22093865 original size:73 final size:73
Alignment explanation
Indices: 22093782--22093929 Score: 296
Period size: 73 Copynumber: 2.0 Consensus size: 73
22093772 TTCTAATCTC
22093782 ATCAAGGATTTGCATTAATATTTTCTTAAAATATTAACCATTCAAGATATTAATAATCTTATACA
1 ATCAAGGATTTGCATTAATATTTTCTTAAAATATTAACCATTCAAGATATTAATAATCTTATACA
22093847 AAATTTTT
66 AAATTTTT
22093855 ATCAAGGATTTGCATTAATATTTTCTTAAAATATTAACCATTCAAGATATTAATAATCTTATACA
1 ATCAAGGATTTGCATTAATATTTTCTTAAAATATTAACCATTCAAGATATTAATAATCTTATACA
22093920 AAATTTTT
66 AAATTTTT
22093928 AT
1 AT
22093930 TTCGAAAACA
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 75 1.00
ACGTcount: A:0.41, C:0.11, G:0.05, T:0.43
Consensus pattern (73 bp):
ATCAAGGATTTGCATTAATATTTTCTTAAAATATTAACCATTCAAGATATTAATAATCTTATACA
AAATTTTT
Found at i:22093909 original size:35 final size:35
Alignment explanation
Indices: 22093795--22093909 Score: 94
Period size: 35 Copynumber: 3.2 Consensus size: 35
22093785 AAGGATTTGC
22093795 ATTAATATTTTCTTAAAATATTAACCATTCAAGAT
1 ATTAATATTTTCTTAAAATATTAACCATTCAAGAT
* * ***
22093830 ATTAATA--ATCTTATACAAAATT-TTTA-TCAAGGATTT
1 ATTAATATTTTCTTA-A-AATATTAACCATTCAA-GA--T
22093866 GCATTAATATTTTCTTAAAATATTAACCATTCAAGAT
1 --ATTAATATTTTCTTAAAATATTAACCATTCAAGAT
22093903 ATTAATA
1 ATTAATA
22093910 ATCTTATACA
Statistics
Matches: 59, Mismatches: 10, Indels: 22
0.65 0.11 0.24
Matches are distributed among these distances:
33 9 0.15
34 4 0.07
35 19 0.32
36 1 0.02
37 1 0.02
38 12 0.20
39 4 0.07
40 9 0.15
ACGTcount: A:0.43, C:0.10, G:0.04, T:0.43
Consensus pattern (35 bp):
ATTAATATTTTCTTAAAATATTAACCATTCAAGAT
Found at i:22097645 original size:17 final size:17
Alignment explanation
Indices: 22097623--22097655 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
22097613 TACACTAATG
*
22097623 AATACAAATAATCAATT
1 AATACAAATAAGCAATT
22097640 AATACAAATAAGCAAT
1 AATACAAATAAGCAAT
22097656 ACAATACACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.61, C:0.12, G:0.03, T:0.24
Consensus pattern (17 bp):
AATACAAATAAGCAATT
Found at i:22097908 original size:18 final size:18
Alignment explanation
Indices: 22097887--22097932 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
22097877 ATATAATAAA
*
22097887 ATAAAATAATGTACATAC
1 ATAAAATAATGTAAATAC
*
22097905 ATAAAAATAA-GTAAATAT
1 AT-AAAATAATGTAAATAC
22097923 ATAAAATAAT
1 ATAAAATAAT
22097933 AATAGTAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 7 0.29
18 10 0.42
19 7 0.29
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.28
Consensus pattern (18 bp):
ATAAAATAATGTAAATAC
Found at i:22097908 original size:23 final size:23
Alignment explanation
Indices: 22097865--22097910 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
22097855 GAAAAAGAAT
*
22097865 TAAAATAACAGTATATAATAAAA
1 TAAAATAACAGTACATAATAAAA
*
22097888 TAAAATAA-TGTACATACATAAAA
1 TAAAATAACAGTACATA-ATAAAA
22097911 ATAAGTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.63, C:0.07, G:0.04, T:0.26
Consensus pattern (23 bp):
TAAAATAACAGTACATAATAAAA
Found at i:22097969 original size:21 final size:21
Alignment explanation
Indices: 22097918--22097970 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
22097908 AAAATAAGTA
*
22097918 AATATATAA-AATAATAATAGT
1 AATA-ATAATAATAACAATAGT
**
22097939 AATACCAATAATAACAATAGT
1 AATAATAATAATAACAATAGT
22097960 AATAATAATAA
1 AATAATAATAA
22097971 ACTAAATAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 2 0.08
21 24 0.92
ACGTcount: A:0.62, C:0.06, G:0.04, T:0.28
Consensus pattern (21 bp):
AATAATAATAATAACAATAGT
Found at i:22099465 original size:44 final size:43
Alignment explanation
Indices: 22099411--22099534 Score: 160
Period size: 44 Copynumber: 2.8 Consensus size: 43
22099401 GATTCGTTGT
* *
22099411 CTTCAGTCTGCTCCGCTGTAACTTCAGAGAGATAAGGCT-GATGG
1 CTTCAATCTGCTCCACTGTAACTTCAG-GAGATAAGGCTAG-TGG
*
22099455 CTTCAATCTGCTCCACTGTAACTTAAGGGAGATAAGGCTAGTGG
1 CTTCAATCTGCTCCACTGTAACTTCA-GGAGATAAGGCTAGTGG
* *
22099499 CTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAG
1 CTTCAATCTGCTCCACTGTAACTTCAGG-AGATAAG
22099535 ATCCGCCATA
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
43 2 0.03
44 67 0.94
45 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (43 bp):
CTTCAATCTGCTCCACTGTAACTTCAGGAGATAAGGCTAGTGG
Found at i:22100248 original size:143 final size:143
Alignment explanation
Indices: 22099455--22100240 Score: 1020
Period size: 143 Copynumber: 5.5 Consensus size: 143
22099445 AGGCTGATGG
* ** * * *
22099455 CTTCAATCTGCTCCACTGTAACTTAAGGGAGATAAGGCTAGTGGCTTCAATCTGCTTCACTGCAA
1 CTTCAGTCTGCTCCGTTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
22099520 CTTCAGGAAGATAAGATCCGCCATAATTTAG-AGCTTTAATCTGTTCCAC-ACCAACTTCAGGGA
66 CTTCAGGAAGATAAGATCCGCCATAATTT-GTAGCTTTAATCTGTTCCACTA-CAACTTCAGGGA
*
22099583 AATAAGATCCGCTAT
129 AATAAGATCCGCTGT
* * *
22099598 CTTCAGTCTGCTCCGTTGTAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTTCTTCACTACAA
1 CTTCAGTCTGCTCCGTTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
* * *
22099663 CTTCAGGAAGATAAGATCCGCCATAATTTGTAACTTTAATCTATTCCACTGCAACTTCAGGGAAA
66 CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTACAACTTCAGGGAAA
*
22099728 TAAGATCCGTTGT
131 TAAGATCCGCTGT
* * *
22099741 CTTTAGTCTGCTCCGATGAAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
1 CTTCAGTCTGCTCCGTTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
* * * *
22099806 CTTCAAGAAGATAAGATCCGTCATAATTTGTAGCTTTAATCTATTCCACTACAAATTCAGGGAAA
66 CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTACAACTTCAGGGAAA
* **
22099871 TAATATTTGCTGT
131 TAAGATCCGCTGT
* *
22099884 CTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCCT-CTTCACTACA
1 CTTCAGTCTGCTCCGTTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAAT-CTGCTTCACTGCA
* * * * *
22099948 ACTTCAAGAAGATAAGATCCGCCATAATTTGTAGCTTTAATATGTTCCACTGCAACTTTAGAGAA
65 ACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTACAACTTCAGGGAA
* *
22100013 ATAAGATCTGCTAT
130 ATAAGATCCGCTGT
* * * * * *
22100027 CTTTAGTCTGTTCCGCTGCAACTTTAGGGAGATAAGGCTGGTGGCTTCAATTTGCTTCACTGCCA
1 CTTCAGTCTGCTCCGTTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
* * * * *
22100092 CTTCAGGAAGATAAAATCGGCCATAATTTGTAGCTTTAATCTGCTCCACTACAATTTTAGGGAAA
66 CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTACAACTTCAGGGAAA
* *
22100157 TATGATCCGTTGT
131 TAAGATCCGCTGT
* * * * * ** * **
22100170 CTTCAGTCTGCTCCATTACAACTTCAGGGAGGTAAGACTTGTATCTTCAACCTGCCCCACTGCAA
1 CTTCAGTCTGCTCCGTTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
22100235 CTTCAG
66 CTTCAG
22100241 AGGGATAAGG
Statistics
Matches: 565, Mismatches: 74, Indels: 8
0.87 0.11 0.01
Matches are distributed among these distances:
142 2 0.00
143 561 0.99
144 2 0.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (143 bp):
CTTCAGTCTGCTCCGTTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAA
CTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATCTGTTCCACTACAACTTCAGGGAAA
TAAGATCCGCTGT
Found at i:22102537 original size:23 final size:23
Alignment explanation
Indices: 22102494--22102538 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
22102484 GCCTCTCCTT
*
22102494 TTTTCCTTTTTCTTATCTTTTTC
1 TTTTCCTTTTTCTCATCTTTTTC
*
22102517 TTTTCTTTTTTCATCAT-TTTTT
1 TTTTCCTTTTTC-TCATCTTTTT
22102539 GAAATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.76
Consensus pattern (23 bp):
TTTTCCTTTTTCTCATCTTTTTC
Found at i:22106046 original size:17 final size:17
Alignment explanation
Indices: 22106024--22106056 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
22106014 TAAACTAATG
*
22106024 AATACAAATAATCAATT
1 AATACAAATAAGCAATT
22106041 AATACAAATAAGCAAT
1 AATACAAATAAGCAAT
22106057 ACAATACACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.61, C:0.12, G:0.03, T:0.24
Consensus pattern (17 bp):
AATACAAATAAGCAATT
Found at i:22106642 original size:16 final size:17
Alignment explanation
Indices: 22106614--22106647 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
22106604 ATACAAATTA
22106614 TATATATAAAATAGTAT
1 TATATATAAAATAGTAT
*
22106631 TATATA-AAAATATTAT
1 TATATATAAAATAGTAT
22106647 T
1 T
22106648 GATTTTTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
TATATATAAAATAGTAT
Found at i:22106828 original size:23 final size:23
Alignment explanation
Indices: 22106785--22106830 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
22106775 GAAAAAGAAT
*
22106785 TAAAATAACAGTATATAATAAAA
1 TAAAATAACAGTACATAATAAAA
*
22106808 TAAAATAA-TGTACATACATAAAA
1 TAAAATAACAGTACATA-ATAAAA
22106831 ATAAGTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.63, C:0.07, G:0.04, T:0.26
Consensus pattern (23 bp):
TAAAATAACAGTACATAATAAAA
Found at i:22106833 original size:19 final size:18
Alignment explanation
Indices: 22106809--22106847 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
22106799 ATAATAAAAT
*
22106809 AAAATAATGTACATACATA
1 AAAATAA-GTAAATACATA
*
22106828 AAAATAAGTAAATATATA
1 AAAATAAGTAAATACATA
22106846 AA
1 AA
22106848 CTAATAATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.26
Consensus pattern (18 bp):
AAAATAAGTAAATACATA
Found at i:22110692 original size:2 final size:2
Alignment explanation
Indices: 22110687--22110714 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
22110677 ACACACACAC
22110687 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22110715 TTGCATGCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22110980 original size:3 final size:3
Alignment explanation
Indices: 22110972--22111009 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
22110962 CTGCATTTCA
*
22110972 TTC TTC TTC TTC TAC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
22111010 TTTTTTCGGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.03, C:0.32, G:0.00, T:0.66
Consensus pattern (3 bp):
TTC
Found at i:22111302 original size:6 final size:7
Alignment explanation
Indices: 22111283--22111328 Score: 58
Period size: 7 Copynumber: 6.3 Consensus size: 7
22111273 GTCTTGATTC
22111283 TTAAAAA
1 TTAAAAA
22111290 TTAAAAA
1 TTAAAAA
22111297 TTAAAAA
1 TTAAAAA
22111304 TTAAAAA
1 TTAAAAA
22111311 CTTCATAAAA
1 -TT-A-AAAA
22111321 -TAAAAA
1 TTAAAAA
22111327 TT
1 TT
22111329 TATTTTTCAG
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
6 4 0.11
7 23 0.66
8 3 0.09
9 1 0.03
10 4 0.11
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.30
Consensus pattern (7 bp):
TTAAAAA
Found at i:22114157 original size:2 final size:2
Alignment explanation
Indices: 22114150--22114180 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
22114140 TATGTATATG
22114150 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
22114181 CGCAAGCGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:22115155 original size:3 final size:3
Alignment explanation
Indices: 22115147--22115173 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
22115137 AAGAGAAATG
22115147 GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA
22115174 ATGAACAGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:22123363 original size:23 final size:24
Alignment explanation
Indices: 22123332--22123430 Score: 98
Period size: 23 Copynumber: 4.3 Consensus size: 24
22123322 AGTGTTATTG
* * *
22123332 ATCAGTGGTAGCTTCAGCTACAAT
1 ATCAATGGTAGCTACGGCTACAAT
*
22123356 -TCAATGGTAGCTACGCCTA-AAT
1 ATCAATGGTAGCTACGGCTACAAT
* *
22123378 ATCAGTGGTAGCTTCGGCTAC-AT
1 ATCAATGGTAGCTACGGCTACAAT
* *
22123401 TTCAGTGGTAGCTACGGCTAC-AT
1 ATCAATGGTAGCTACGGCTACAAT
22123424 ATCAATG
1 ATCAATG
22123431 TGACACTTTT
Statistics
Matches: 62, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
22 3 0.05
23 59 0.95
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
ATCAATGGTAGCTACGGCTACAAT
Found at i:22123385 original size:46 final size:46
Alignment explanation
Indices: 22123332--22123427 Score: 147
Period size: 46 Copynumber: 2.1 Consensus size: 46
22123322 AGTGTTATTG
22123332 ATCAGTGGTAGCTTCAGCTACAATTCAATGGTAGCTACGCCTAAAT
1 ATCAGTGGTAGCTTCAGCTACAATTCAATGGTAGCTACGCCTAAAT
* * * * *
22123378 ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTTCAGCTACAATTCAATGGTAGCTACGCCTAAAT
22123424 ATCA
1 ATCA
22123428 ATGTGACACT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (46 bp):
ATCAGTGGTAGCTTCAGCTACAATTCAATGGTAGCTACGCCTAAAT
Found at i:22133076 original size:25 final size:25
Alignment explanation
Indices: 22133048--22133105 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
22133038 TGTGTAAATG
*
22133048 GTAAGCTCCTCTGAACTGAATAACA
1 GTAAGCTCCTCTGAACTAAATAACA
* **
22133073 GTAA-CTTCCTCTGAGCTAAATAATG
1 GTAAGC-TCCTCTGAACTAAATAACA
22133098 GTAAGCTC
1 GTAAGCTC
22133106 ATACGAGCTG
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
24 1 0.04
25 25 0.93
26 1 0.04
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (25 bp):
GTAAGCTCCTCTGAACTAAATAACA
Found at i:22133113 original size:25 final size:25
Alignment explanation
Indices: 22133085--22133144 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
22133075 AACTTCCTCT
*
22133085 GAGCTAAATAATGGTAAGCTCATAC
1 GAGCTAAATAATGGTAAGCTCATAA
* * *
22133110 GAGCTGAGTAATGGTAAGCTTATAA
1 GAGCTAAATAATGGTAAGCTCATAA
22133135 GAGCTGAAAT
1 GAGCT-AAAT
22133145 CGATAACACT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
25 26 0.93
26 2 0.07
ACGTcount: A:0.38, C:0.12, G:0.25, T:0.25
Consensus pattern (25 bp):
GAGCTAAATAATGGTAAGCTCATAA
Found at i:22133488 original size:18 final size:18
Alignment explanation
Indices: 22133467--22133509 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
22133457 GTCCAACACA
* *
22133467 CATTTTTAGCAAAATTAC
1 CATTTTGAGAAAAATTAC
*
22133485 CATTTTGGGAAAAATTAC
1 CATTTTGAGAAAAATTAC
22133503 CATTTTG
1 CATTTTG
22133510 CTCATATACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.40
Consensus pattern (18 bp):
CATTTTGAGAAAAATTAC
Found at i:22134827 original size:18 final size:18
Alignment explanation
Indices: 22134768--22134830 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 18
22134758 TTTAATTTTT
*
22134768 ATTATTATTTTCATTACT-
1 ATTATTA-TTTGATTACTG
*
22134786 ATTATTATTTGTTTTACTG
1 ATTATTATTTG-ATTACTG
22134805 A-TATTATTATGATTA-TG
1 ATTATTATT-TGATTACTG
22134822 ATTATTATT
1 ATTATTATT
22134831 GTCATTGATT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
17 6 0.16
18 29 0.76
19 3 0.08
ACGTcount: A:0.29, C:0.05, G:0.06, T:0.60
Consensus pattern (18 bp):
ATTATTATTTGATTACTG
Found at i:22134908 original size:25 final size:25
Alignment explanation
Indices: 22134849--22134908 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
22134839 TTTTATTTGT
*
22134849 TTTTCT-TTTTAGTTTTATTTTTTA
1 TTTTCTATTTTAGTTTTATTTTCTA
**
22134873 TGCT-TAGTTTTAGTTTTATTTTCTA
1 TTTTCTA-TTTTAGTTTTATTTTCTA
22134898 TTTTCTATTTT
1 TTTTCTATTTT
22134909 TATTTTCTTA
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
23 1 0.04
24 2 0.07
25 23 0.82
26 2 0.07
ACGTcount: A:0.13, C:0.07, G:0.07, T:0.73
Consensus pattern (25 bp):
TTTTCTATTTTAGTTTTATTTTCTA
Found at i:22134914 original size:6 final size:6
Alignment explanation
Indices: 22134848--22134914 Score: 53
Period size: 6 Copynumber: 10.7 Consensus size: 6
22134838 ATTTTATTTG
* * ** * *
22134848 TTTTTC TTTTTA GTTTTA TTTTTTA TGCTTA GTTTTA GTTTTA TTTTCTA
1 TTTTTA TTTTTA TTTTTA -TTTTTA TTTTTA TTTTTA TTTTTA TTTT-TA
22134898 TTTTCTA TTTTTA TTTT
1 TTTT-TA TTTTTA TTTT
22134915 CTTAGACTTA
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
6 32 0.64
7 18 0.36
ACGTcount: A:0.13, C:0.06, G:0.06, T:0.75
Consensus pattern (6 bp):
TTTTTA
Found at i:22134928 original size:26 final size:26
Alignment explanation
Indices: 22134895--22134963 Score: 65
Period size: 26 Copynumber: 2.7 Consensus size: 26
22134885 GTTTTATTTT
*
22134895 CTAT-TTTCTATTTTTAT-TTTCTTAGA
1 CTATATTTCTATTTTTATCTTT-TGA-A
22134921 CT-TATTTC-ATTTCTTATCTTTTGAA
1 CTATATTTCTATTT-TTATCTTTTGAA
*
22134946 CTATATTTTTATTTTTAT
1 CTATATTTCTATTTTTAT
22134964 GGTTTTTTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
25 8 0.22
26 21 0.58
27 7 0.19
ACGTcount: A:0.20, C:0.12, G:0.03, T:0.65
Consensus pattern (26 bp):
CTATATTTCTATTTTTATCTTTTGAA
Found at i:22138234 original size:43 final size:43
Alignment explanation
Indices: 22138199--22138376 Score: 189
Period size: 43 Copynumber: 4.1 Consensus size: 43
22138189 AGACGAGGAC
* * **
22138199 CTTTAGCGGCGCTTTCTCCACAAATGCCGCTAAAGAATCTG-T
1 CTTTAGCGGCGCTTTCTCCACAAACGCCGCAAAAGACCCTGAT
* *
22138241 GCTTTAGCCGCGCTTTCTCTACAAACGCCGCAAAAGACCCCT-AT
1 -CTTTAGCGGCGCTTTCTCCACAAACGCCGCAAAAGA-CCCTGAT
* * *
22138285 CTTTAGCGGCGCTTTCTCCACAAACGCTGCAAAAGACCTTTAT
1 CTTTAGCGGCGCTTTCTCCACAAACGCCGCAAAAGACCCTGAT
* ** * **
22138328 CTTTAGCGGCGCTTTCTACACAAACGTTGCTAAAGACCCTTCT
1 CTTTAGCGGCGCTTTCTCCACAAACGCCGCAAAAGACCCTGAT
22138371 CTTTAG
1 CTTTAG
22138377 TGGCATTTTT
Statistics
Matches: 117, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
42 3 0.03
43 111 0.95
44 3 0.03
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTCTCCACAAACGCCGCAAAAGACCCTGAT
Found at i:22138332 original size:86 final size:86
Alignment explanation
Indices: 22138199--22138376 Score: 216
Period size: 86 Copynumber: 2.1 Consensus size: 86
22138189 AGACGAGGAC
* * *
22138199 CTTTAGCGGCGCTTTCTCCACAAATGCCGCTAAAGAATCTGTGCTTTAGCCGCGCTTTCT-CTAC
1 CTTTAGCGGCGCTTTCTCCACAAACGCCGCAAAAGAACCTGTGCTTTAGCCGCGCTTTCTAC-AC
22138263 AAACGCCGCAAAAGACCCCTAT
65 AAACGCCGCAAAAGACCCCTAT
* * * *
22138285 CTTTAGCGGCGCTTTCTCCACAAACGCTGCAAAAG-ACCTTTATCTTTAGCGGCGCTTTCTACAC
1 CTTTAGCGGCGCTTTCTCCACAAACGCCGCAAAAGAACCTGT-GCTTTAGCCGCGCTTTCTACAC
** * * *
22138349 AAACGTTGCTAAAGACCCTTCT
65 AAACGCCGCAAAAGACCCCTAT
22138371 CTTTAG
1 CTTTAG
22138377 TGGCATTTTT
Statistics
Matches: 78, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
85 4 0.05
86 73 0.94
87 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (86 bp):
CTTTAGCGGCGCTTTCTCCACAAACGCCGCAAAAGAACCTGTGCTTTAGCCGCGCTTTCTACACA
AACGCCGCAAAAGACCCCTAT
Found at i:22138781 original size:21 final size:21
Alignment explanation
Indices: 22138752--22138828 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
22138742 TTTTACGCTG
22138752 CTCTGCTTCCCTCGCTGTAGC
1 CTCTGCTTCCCTCGCTGTAGC
* *
22138773 CTCTACTTCCCTCGCTTTAGC
1 CTCTGCTTCCCTCGCTGTAGC
* * *
22138794 CTCTGCTTCCTTCGTTGCAGC
1 CTCTGCTTCCCTCGCTGTAGC
*
22138815 CTCTGCTTCTCTCG
1 CTCTGCTTCCCTCG
22138829 TTGCCGCATC
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 47 1.00
ACGTcount: A:0.05, C:0.42, G:0.16, T:0.38
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGTAGC
Found at i:22138829 original size:21 final size:21
Alignment explanation
Indices: 22138752--22138843 Score: 96
Period size: 21 Copynumber: 4.4 Consensus size: 21
22138742 TTTTACGCTG
* *
22138752 CTCTGCTTCCCTCGCTGTAGC
1 CTCTGCTTCCCTCGTTGCAGC
* *
22138773 CTCTACTTCCCTCGCTT-TAGC
1 CTCTGCTTCCCTCG-TTGCAGC
*
22138794 CTCTGCTTCCTTCGTTGCAGC
1 CTCTGCTTCCCTCGTTGCAGC
* *
22138815 CTCTGCTTCTCTCGTTGCCGC
1 CTCTGCTTCCCTCGTTGCAGC
*
22138836 ATCTGCTT
1 CTCTGCTT
22138844 TAAGCTGCTG
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
20 2 0.03
21 57 0.95
22 1 0.02
ACGTcount: A:0.05, C:0.40, G:0.16, T:0.38
Consensus pattern (21 bp):
CTCTGCTTCCCTCGTTGCAGC
Found at i:22138980 original size:66 final size:65
Alignment explanation
Indices: 22138804--22138984 Score: 211
Period size: 66 Copynumber: 2.7 Consensus size: 65
22138794 CTCTGCTTCC
* * * * * *
22138804 TTCGTTGCAGCCTCTGCTTCTCTCGTTGCCGCATCTGCTTTAAGCTGCTGCTGGAGTTCTTCATA
1 TTCGTTG-AACCTCAGCTTCTCTCGATGCTGCATCCGCTTTAAGTTG-TGCTGGAGTTCTTCATA
22138869 CT
64 CT
* * *
22138871 TTCGTTGAACCTCGGCTTCTTTCGCTGCTGCATCCGCTTTAAGTTGTAGCTGGAGTTCTTCATAT
1 TTCGTTGAACCTCAGCTTCTCTCGATGCTGCATCCGCTTTAAGTTGT-GCTGGAGTTCTTCATA-
22138936 CT
64 CT
* * *
22138938 TT-TTTGAACCTCAGCTTCTCTCGATGTTGCCTCCGCTTTAAGTTGTG
1 TTCGTTGAACCTCAGCTTCTCTCGATGCTGCATCCGCTTTAAGTTGTG
22138985 TAATTTGCTC
Statistics
Matches: 99, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
65 2 0.02
66 86 0.87
67 11 0.11
ACGTcount: A:0.12, C:0.27, G:0.20, T:0.40
Consensus pattern (65 bp):
TTCGTTGAACCTCAGCTTCTCTCGATGCTGCATCCGCTTTAAGTTGTGCTGGAGTTCTTCATACT
Found at i:22144628 original size:2 final size:2
Alignment explanation
Indices: 22144621--22144647 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
22144611 TAAATTTTAA
22144621 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
22144648 AATTTTAAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:22144629 original size:42 final size:43
Alignment explanation
Indices: 22144528--22144615 Score: 160
Period size: 43 Copynumber: 2.1 Consensus size: 43
22144518 ATTTATTGAC
22144528 AATAAAATTGAAATATAGGTTATATATCCATACCATATATATA
1 AATAAAATTGAAATATAGGTTATATATCCATACCATATATATA
*
22144571 AATAAAATTGAAATATAGGTTAT-TATCCATACCATATTTATA
1 AATAAAATTGAAATATAGGTTATATATCCATACCATATATATA
22144613 AAT
1 AAT
22144616 TTTAAATATA
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
42 21 0.48
43 23 0.52
ACGTcount: A:0.48, C:0.09, G:0.07, T:0.36
Consensus pattern (43 bp):
AATAAAATTGAAATATAGGTTATATATCCATACCATATATATA
Found at i:22144674 original size:18 final size:19
Alignment explanation
Indices: 22144649--22144784 Score: 118
Period size: 18 Copynumber: 6.6 Consensus size: 19
22144639 ATATATATAA
22144649 ATTTTAAGTAATGTAATAT
1 ATTTTAAGTAATGTAATAT
22144668 A-TTTAAGTAATGTAAGTTAT
1 ATTTTAAGTAATGTAA--TAT
22144688 AAATTTTTGTAAGTAATGTAATAT
1 --A--TTT-TAAGTAATGTAATAT
22144712 A-TTTAAGTAATGTAAGTTAT
1 ATTTTAAGTAATGTAA--TAT
22144732 AAATTTTTGTAAGTAATGTAATA-
1 --A--TTT-TAAGTAATGTAATAT
22144755 ATTTTAAGTAATGTAATAT
1 ATTTTAAGTAATGTAATAT
22144774 A-TTTAAGTAAT
1 ATTTTAAGTAAT
22144785 ATATTTTAGT
Statistics
Matches: 100, Mismatches: 0, Indels: 35
0.74 0.00 0.26
Matches are distributed among these distances:
18 50 0.50
19 7 0.07
20 6 0.06
21 1 0.01
22 3 0.03
24 5 0.05
25 4 0.04
26 24 0.24
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (19 bp):
ATTTTAAGTAATGTAATAT
Found at i:22144699 original size:22 final size:23
Alignment explanation
Indices: 22144656--22144771 Score: 116
Period size: 22 Copynumber: 5.2 Consensus size: 23
22144646 TAAATTTTAA
* *
22144656 GTAATGTAATATATTTAAGTAAT
1 GTAATGTAATAAATTTTAGTAAT
* *
22144679 GTAA-GTTATAAATTTTTGTAA-
1 GTAATGTAATAAATTTTAGTAAT
* *
22144700 GTAATGTAATATATTTAAGTAAT
1 GTAATGTAATAAATTTTAGTAAT
* *
22144723 GTAA-GTTATAAATTTTTGTAA-
1 GTAATGTAATAAATTTTAGTAAT
22144744 GTAATGTAAT-AATTTTAAGTAAT
1 GTAATGTAATAAATTTT-AGTAAT
22144767 GTAAT
1 GTAAT
22144772 ATATTTAAGT
Statistics
Matches: 74, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
21 14 0.19
22 47 0.64
23 13 0.18
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (23 bp):
GTAATGTAATAAATTTTAGTAAT
Found at i:22144701 original size:26 final size:26
Alignment explanation
Indices: 22144671--22144752 Score: 108
Period size: 26 Copynumber: 3.5 Consensus size: 26
22144661 GTAATATATT
22144671 TAAGTAATGTAAGTTATAAATTTTTG
1 TAAGTAATGTAAGTTATAAATTTTTG
22144697 TAAGTAATGTAA--TAT--A---TT-
1 TAAGTAATGTAAGTTATAAATTTTTG
22144715 TAAGTAATGTAAGTTATAAATTTTTG
1 TAAGTAATGTAAGTTATAAATTTTTG
22144741 TAAGTAATGTAA
1 TAAGTAATGTAA
22144753 TAATTTTAAG
Statistics
Matches: 48, Mismatches: 0, Indels: 16
0.75 0.00 0.25
Matches are distributed among these distances:
18 12 0.25
19 2 0.04
20 3 0.06
22 2 0.04
24 3 0.06
25 2 0.04
26 24 0.50
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (26 bp):
TAAGTAATGTAAGTTATAAATTTTTG
Found at i:22144710 original size:44 final size:44
Alignment explanation
Indices: 22144653--22144770 Score: 220
Period size: 44 Copynumber: 2.7 Consensus size: 44
22144643 ATATAAATTT
22144653 TAAGTAATGTAATATATTTAAGTAATGTAAGTTATAAATTTTTG
1 TAAGTAATGTAATATATTTAAGTAATGTAAGTTATAAATTTTTG
22144697 TAAGTAATGTAATATATTTAAGTAATGTAAGTTATAAATTTTTG
1 TAAGTAATGTAATATATTTAAGTAATGTAAGTTATAAATTTTTG
22144741 TAAGTAATGTAATA-ATTTTAAGTAATGTAA
1 TAAGTAATGTAATATA-TTTAAGTAATGTAA
22144771 TATATTTAAG
Statistics
Matches: 73, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
43 1 0.01
44 72 0.99
ACGTcount: A:0.42, C:0.00, G:0.14, T:0.44
Consensus pattern (44 bp):
TAAGTAATGTAATATATTTAAGTAATGTAAGTTATAAATTTTTG
Found at i:22144717 original size:62 final size:58
Alignment explanation
Indices: 22144651--22144810 Score: 162
Period size: 62 Copynumber: 2.6 Consensus size: 58
22144641 ATATATAAAT
*
22144651 TTTAAGTAATGTAATATATTTAAGTAATGTAAGTTATAAATTTTTGTAAGTAATGTAATATA
1 TTTAAGTAATGTAATATATTTAAGTAATGTAAGTAAT-AA--TTT-TAAGTAATGTAATATA
**
22144713 TTTAAGTAATGTAAGTTATAAATTTTTGTAA-GTAATGTAATAATTTTAAGTAATGTAATATA
1 TTTAAGTAATGTAA--TAT--ATTTAAGTAATGTAA-GTAATAATTTTAAGTAATGTAATATA
* * * *
22144775 TTTAAGTAATATATTTTA-GTAAGTAATGTAAGTAAT
1 TTTAAGTAATGTAATATATTTAAGTAATGTAAGTAAT
22144811 GTAATATATA
Statistics
Matches: 83, Mismatches: 9, Indels: 17
0.76 0.08 0.16
Matches are distributed among these distances:
57 10 0.12
58 5 0.06
60 2 0.02
62 42 0.51
63 3 0.04
64 3 0.04
65 6 0.07
66 12 0.14
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (58 bp):
TTTAAGTAATGTAATATATTTAAGTAATGTAAGTAATAATTTTAAGTAATGTAATATA
Found at i:22144783 original size:13 final size:13
Alignment explanation
Indices: 22144767--22144893 Score: 64
Period size: 13 Copynumber: 9.4 Consensus size: 13
22144757 TTTAAGTAAT
22144767 GTAATATATTTAA
1 GTAATATATTTAA
*
22144780 GTAATATATTTTA
1 GTAATATATTTAA
*
22144793 GTAAGTA-ATGTAA
1 GTAA-TATATTTAA
* *
22144806 GTAATGTAATATATACT
1 GTAA--T-ATATTTA-A
*
22144823 TTAAT-T-TTAGTAA
1 GTAATATATT--TAA
*
22144836 GTAATGTATTTAA
1 GTAATATATTTAA
22144849 GTAATATATTTAA
1 GTAATATATTTAA
*
22144862 GTAA-ATTTTAGTAA
1 GTAATATATT--TAA
* *
22144876 TTAATATATTTAC
1 GTAATATATTTAA
22144889 GTAAT
1 GTAAT
22144894 GTAAGTTATA
Statistics
Matches: 87, Mismatches: 15, Indels: 24
0.69 0.12 0.19
Matches are distributed among these distances:
12 5 0.06
13 54 0.62
14 13 0.15
15 8 0.09
16 4 0.05
17 3 0.03
ACGTcount: A:0.42, C:0.02, G:0.11, T:0.46
Consensus pattern (13 bp):
GTAATATATTTAA
Found at i:22144811 original size:62 final size:62
Alignment explanation
Indices: 22144671--22144865 Score: 173
Period size: 62 Copynumber: 3.0 Consensus size: 62
22144661 GTAATATATT
* * * * **
22144671 TAAGTAATGTAAGTTAT-AAAT-TTTTGTAAGTAATGTAATATATTTAAGTAATGTAAGTTA-
1 TAAGTAATGTAAGTAATGTAATAATTT-TAAGTAATGTAATATATTTAAGTAATATATTTTAG
* **
22144731 TAAATTTTTGTAAGTAATGTAATAATTTTAAGTAATGTAATATATTTAAGTAATATATTTTAG
1 T-AAGTAATGTAAGTAATGTAATAATTTTAAGTAATGTAATATATTTAAGTAATATATTTTAG
*
22144794 TAAGTAATGTAAGTAATGTAATATATACTTTAATTTTAGTAA-GTAATGTATTTAAGTAATATAT
1 TAAGTAATGTAAGTAATGTAATA-AT--TTT-A----AGTAATGTAATATATTTAAGTAATATAT
*
22144858 TTAAG
58 TTTAG
22144863 TAA
1 TAA
22144866 ATTTTAGTAA
Statistics
Matches: 109, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
60 1 0.01
61 12 0.11
62 53 0.49
63 6 0.06
65 3 0.03
66 1 0.01
69 28 0.26
70 5 0.05
ACGTcount: A:0.42, C:0.01, G:0.13, T:0.45
Consensus pattern (62 bp):
TAAGTAATGTAAGTAATGTAATAATTTTAAGTAATGTAATATATTTAAGTAATATATTTTAG
Found at i:22148380 original size:83 final size:82
Alignment explanation
Indices: 22148233--22148387 Score: 188
Period size: 83 Copynumber: 1.9 Consensus size: 82
22148223 AATTACCTTA
* * * * * *
22148233 CTGAATAGAAACGGTGCCGTTTTAAGAAACTTTAATCCATAGTTCTGGCGTTTTCCTGAAAAACG
1 CTGAAGAGAAACGGTGACGTTTTAAGAAACATTAATACATAATTCTGGCATTTT-CTGAAAAACG
22148298 CCACTAAAATTTCAAGTC
65 CCACTAAAATTTCAAGTC
* *
22148316 CTGAAGAGAAACGGTGACGTTTTGAA-AAACATTAATACATAATTGTGGCATTTT-TAGCATAAA
1 CTGAAGAGAAACGGTGACGTTTT-AAGAAACATTAATACATAATTCTGGCATTTTCT-G-AAAAA
22148379 CGCCACTAA
63 CGCCACTAA
22148388 TAGATTACAC
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
81 1 0.02
82 1 0.02
83 57 0.93
84 2 0.03
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.29
Consensus pattern (82 bp):
CTGAAGAGAAACGGTGACGTTTTAAGAAACATTAATACATAATTCTGGCATTTTCTGAAAAACGC
CACTAAAATTTCAAGTC
Found at i:22148813 original size:83 final size:83
Alignment explanation
Indices: 22148595--22148824 Score: 211
Period size: 83 Copynumber: 2.8 Consensus size: 83
22148585 GTAATTGCCC
* * * **
22148595 CGTTTTAAG-AGCATTAAATATATATTTGCGGCGTTTTTAGCAAAAACGCCACTAAAAATTACCT
1 CGTTTTAAGAAACATTAAA-ACATAATTGCGGCGTTTTTAGCAAAAACGCCACTAAAAATTACAG
* *
22148659 TACTGAATAGAAACGGTGC
65 TACTGAAGAGAAACGGTGA
* ** * * *
22148678 CGTTTTAAGAAACTTTAATCCATAGTT-CTGGCGTTTTCCT-G-AAAAACACCACT-AAAATTTC
1 CGTTTTAAGAAACATTAAAACATAATTGC-GGCGTTTT--TAGCAAAAACGCCACTAAAAATTAC
*
22148739 AAGTCCTGAAGAGAAACGGTGA
63 -AGTACTGAAGAGAAACGGTGA
* *
22148761 CGTTTTGAA-AAACATTAAAACATAATTGCGGCGTTTTTAGCATAAACGCCACTAATAGATTACA
1 CGTTTT-AAGAAACATTAAAACATAATTGCGGCGTTTTTAGCAAAAACGCCACTAA-AAATTACA
22148825 CTCCTCTTCT
Statistics
Matches: 115, Mismatches: 21, Indels: 21
0.73 0.13 0.13
Matches are distributed among these distances:
81 1 0.01
82 9 0.08
83 87 0.76
84 12 0.10
85 6 0.05
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.30
Consensus pattern (83 bp):
CGTTTTAAGAAACATTAAAACATAATTGCGGCGTTTTTAGCAAAAACGCCACTAAAAATTACAGT
ACTGAAGAGAAACGGTGA
Found at i:22149206 original size:427 final size:428
Alignment explanation
Indices: 22148208--22149448 Score: 2277
Period size: 427 Copynumber: 2.9 Consensus size: 428
22148198 TATATTTGCT
22148208 AAAAACGCCACTAAAAATTACCTTACTGAATAGAAACGGTGCCGTTTTAAGAAACTTTAATCCAT
1 AAAAACGCCACTAAAAATTACCTTACTGAATAGAAACGGTGCCGTTTTAAGAAACTTTAATCCAT
22148273 AGTTCTGGCGTTTTCCTGAAAAACGCCACTAAAATTTCAAGTCCTGAAGAGAAACGGTGACGTTT
66 AGTTCTGGCGTTTTCCTGAAAAACGCCACTAAAATTTCAAGTCCTGAAGAGAAACGGTGACGTTT
* * *
22148338 TGAAAAACATTAATACATAATTGTGGCATTTTTAGCATAAACGCCACTAATAGATTACACTCCTC
131 TGAAAAACATTAAAACATAATTGCGGCGTTTTTAGCATAAACGCCACTAATAGATTACACTCCTC
* * *
22148403 TTCTAAAACGGTGTCGTTCTGAGAAATTATAATACATATTTACGGCGTTTTCCCAAAAAACGACA
196 TTCTGAAACGGTGCCGTTCTGAGAAATTATAATACATATTTACGGCGTTTTCCCAAAAAACGCCA
*
22148468 CAAATTAAATTAAATTTCTAAATGGGAACGATGTCGTTTTGAAAAAAATGGGTACATAGTTGCGG
261 CAAATTAAATTAAATTTCTAAATGGGAACGACGTCGTTTTGAAAAAAATGGGTACATAGTTGCGG
*
22148533 CGTTTCTATGAAAACGCCACTAATGTTTTTTTTCCTTATAATGTGGTCCTGCGTAATTGCCCCGT
326 CGTTTCTATGAAAACGCCACTAATGTTTTTTTTCCTTATAATGTGGTCCTGCATAATTGCCCCGT
* *
22148598 TTTAAGAGCATTAAATATATATTTGCGGCGTTTTTAGC
391 TTTAAGAACATTAAATATATATTTGCGGCATTTTTAGC
22148636 AAAAACGCCACTAAAAATTACCTTACTGAATAGAAACGGTGCCGTTTTAAGAAACTTTAATCCAT
1 AAAAACGCCACTAAAAATTACCTTACTGAATAGAAACGGTGCCGTTTTAAGAAACTTTAATCCAT
*
22148701 AGTTCTGGCGTTTTCCTGAAAAACACCACTAAAATTTCAAGTCCTGAAGAGAAACGGTGACGTTT
66 AGTTCTGGCGTTTTCCTGAAAAACGCCACTAAAATTTCAAGTCCTGAAGAGAAACGGTGACGTTT
22148766 TGAAAAACATTAAAACATAATTGCGGCGTTTTTAGCATAAACGCCACTAATAGATTACACTCCTC
131 TGAAAAACATTAAAACATAATTGCGGCGTTTTTAGCATAAACGCCACTAATAGATTACACTCCTC
*
22148831 TTCTGAAACGGTGCCGTTCTGAGAAATTATAATACATATTTACGGTGTTTTCCCAAAAAACGCCA
196 TTCTGAAACGGTGCCGTTCTGAGAAATTATAATACATATTTACGGCGTTTTCCCAAAAAACGCCA
22148896 CAAATTAAATTAAATTTCTAAATGGGAACGACGTCGTTTTGAAAAAAATGGGTACATAGTTGCGG
261 CAAATTAAATTAAATTTCTAAATGGGAACGACGTCGTTTTGAAAAAAATGGGTACATAGTTGCGG
22148961 CGTTTCTATGAAAACGCCACTAATG-TTTTTTTCCTTATAATGTGGTCCTGCATAATTGCCCCGT
326 CGTTTCTATGAAAACGCCACTAATGTTTTTTTTCCTTATAATGTGGTCCTGCATAATTGCCCCGT
*
22149025 TTTAAGAACCTTAAATATATATTTGCGGCATTTTTAGC
391 TTTAAGAACATTAAATATATATTTGCGGCATTTTTAGC
*
22149063 AAAAACGCCACTAAAAATTACCTTACTGAATAGAAACGGTGTCGTTTTAAGAAACTTTAATCCAT
1 AAAAACGCCACTAAAAATTACCTTACTGAATAGAAACGGTGCCGTTTTAAGAAACTTTAATCCAT
*
22149128 AGTTCTGGCGTTTTCCCGAAAAACGCCACTAAAATTTCAAGTCCTGAAGAGAAACGGTGACGTTT
66 AGTTCTGGCGTTTTCCTGAAAAACGCCACTAAAATTTCAAGTCCTGAAGAGAAACGGTGACGTTT
*
22149193 TGAAAAACATTAAAACATAATTGCGGCGTTTTTAGCATAAACGCCATTAATAGATTACACTCCTC
131 TGAAAAACATTAAAACATAATTGCGGCGTTTTTAGCATAAACGCCACTAATAGATTACACTCCTC
* *
22149258 TTCTGAAACGGTGCCGTTCTGAGAAATTATAATACATATTAACGGCGTTTTCCCAGAAAACGCCA
196 TTCTGAAACGGTGCCGTTCTGAGAAATTATAATACATATTTACGGCGTTTTCCCAAAAAACGCCA
*
22149323 CAAATTAAATTAAATTTCTAAATGGGAACGACGTCGTTTTAAAAAAAATGGGTACATAGTTGCGG
261 CAAATTAAATTAAATTTCTAAATGGGAACGACGTCGTTTTGAAAAAAATGGGTACATAGTTGCGG
* * *
22149388 CGTTTCTATGCAAATGCCACTAATGTTTTTTTTCCTTATAATGTGGTCCTGCTTAATTGCC
326 CGTTTCTATGAAAACGCCACTAATGTTTTTTTTCCTTATAATGTGGTCCTGCATAATTGCC
22149449 AAAATTAAAT
Statistics
Matches: 788, Mismatches: 24, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
427 413 0.52
428 375 0.48
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.31
Consensus pattern (428 bp):
AAAAACGCCACTAAAAATTACCTTACTGAATAGAAACGGTGCCGTTTTAAGAAACTTTAATCCAT
AGTTCTGGCGTTTTCCTGAAAAACGCCACTAAAATTTCAAGTCCTGAAGAGAAACGGTGACGTTT
TGAAAAACATTAAAACATAATTGCGGCGTTTTTAGCATAAACGCCACTAATAGATTACACTCCTC
TTCTGAAACGGTGCCGTTCTGAGAAATTATAATACATATTTACGGCGTTTTCCCAAAAAACGCCA
CAAATTAAATTAAATTTCTAAATGGGAACGACGTCGTTTTGAAAAAAATGGGTACATAGTTGCGG
CGTTTCTATGAAAACGCCACTAATGTTTTTTTTCCTTATAATGTGGTCCTGCATAATTGCCCCGT
TTTAAGAACATTAAATATATATTTGCGGCATTTTTAGC
Found at i:22149235 original size:83 final size:83
Alignment explanation
Indices: 22149022--22149238 Score: 201
Period size: 83 Copynumber: 2.6 Consensus size: 83
22149012 ATAATTGCCC
* * * * **
22149022 CGTTTTAAG-AACCTTAAATATATATTTGCGGCATTTTTAGCAAAAACGCCACTAAAAATTACCT
1 CGTTTTAAGAAACATTAAA-ACATAATTGCGGCGTTTTTAGCAAAAACGCCACTAAAAATTACAG
* *
22149086 TACTGAATAGAAACGGTGT
65 TACTGAAGAGAAACGGTGA
* ** * ** *
22149105 CGTTTTAAGAAACTTTAATCCATAGTT-CTGGCG-TTTTCCCGAAAAACGCCACT-AAAATTTCA
1 CGTTTTAAGAAACATTAAAACATAATTGC-GGCGTTTTTAGC-AAAAACGCCACTAAAAATTAC-
*
22149167 AGTCCTGAAGAGAAACGGTGA
63 AGTACTGAAGAGAAACGGTGA
*
22149188 CGTTTTGAA-AAACATTAAAACATAATTGCGGCGTTTTTAGCATAAACGCCA
1 CGTTTT-AAGAAACATTAAAACATAATTGCGGCGTTTTTAGCAAAAACGCCA
22149239 TTAATAGATT
Statistics
Matches: 106, Mismatches: 21, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
82 13 0.12
83 78 0.74
84 15 0.14
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.29
Consensus pattern (83 bp):
CGTTTTAAGAAACATTAAAACATAATTGCGGCGTTTTTAGCAAAAACGCCACTAAAAATTACAGT
ACTGAAGAGAAACGGTGA
Found at i:22150212 original size:21 final size:20
Alignment explanation
Indices: 22150188--22150228 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
22150178 CCTAACGTCT
*
22150188 AACCCCTAAACCTTAAATCCC
1 AACCCCTAAACCAT-AATCCC
*
22150209 AACCCTTAAACCATAATCCC
1 AACCCCTAAACCATAATCCC
22150229 TAGTCCTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.39, C:0.41, G:0.00, T:0.20
Consensus pattern (20 bp):
AACCCCTAAACCATAATCCC
Found at i:22151176 original size:42 final size:41
Alignment explanation
Indices: 22151130--22151373 Score: 255
Period size: 41 Copynumber: 5.9 Consensus size: 41
22151120 TAAAATATCC
* * *
22151130 TTAGCAGCGCTTTTCCATAAAACGCTGCTAAATACCCCAGCA
1 TTAGCGGCGCTTTTCCA-AAAACGCCGCTAAAGACCCCAGCA
22151172 TTAGCGGCGCTTTTCCAGAAAACGCCGCTAAAGA-CCCAGCA
1 TTAGCGGCGCTTTTCCA-AAAACGCCGCTAAAGACCCCAGCA
* * **
22151213 TTAGCGGCGCTTTTTCACAAAACGCCGCTAAAGGCCAAAGCA
1 TTAGCGGCGCTTTTCCA-AAAACGCCGCTAAAGACCCCAGCA
* * *
22151255 TTAGCGGCGCTTTTACAAAAACGCCGCTAAAG-CCCATAGAA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCC-CAGCA
* * *
22151296 TTAGCGGCGCTTATT-CAAAAATGCCGCTAAAG-CCTACAACA
1 TTAGCGGCGCTT-TTCCAAAAACGCCGCTAAAGACC-CCAGCA
*
22151337 TTAGCGGCGCTTCTT-AATAAAACGCCGCTAAAGACCC
1 TTAGCGGCGCTT-TTCCA-AAAACGCCGCTAAAGACCC
22151374 GAAAGGTAGG
Statistics
Matches: 174, Mismatches: 22, Indels: 12
0.84 0.11 0.06
Matches are distributed among these distances:
40 2 0.01
41 103 0.59
42 67 0.39
43 2 0.01
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.20
Consensus pattern (41 bp):
TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGACCCCAGCA
Found at i:22151299 original size:83 final size:81
Alignment explanation
Indices: 22151130--22151373 Score: 280
Period size: 83 Copynumber: 3.0 Consensus size: 81
22151120 TAAAATATCC
* * * * ** *
22151130 TTAGCAGCGCTTTTCCATAAAACGCTGCTAAATACCCCAGCATTAGCGGCGCTTTTCCAGAAAAC
1 TTAGCGGCGCTTTTTCA-AAAACGCCGCTAAA-GCCAAAGCATTAGCGGCGCTTTTACAGAAAAC
*
22151195 GCCGCTAAAGACCCAGCA
64 GCCGCTAAAGACCCAGAA
22151213 TTAGCGGCGCTTTTTCACAAAACGCCGCTAAAGGCCAAAGCATTAGCGGCGCTTTTACA-AAAAC
1 TTAGCGGCGCTTTTTCA-AAAACGCCGCTAAA-GCCAAAGCATTAGCGGCGCTTTTACAGAAAAC
22151277 GCCGCTAAAG-CCCATAGAA
64 GCCGCTAAAGACCC--AGAA
* * *
22151296 TTAGCGGCGCTTATTCAAAAATGCCGCTAAAGCCTACAA-CATTAGCGGCGCTTCTTA-ATAAAA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCC-A-AAGCATTAGCGGCGCTT-TTACAGAAAA
22151359 CGCCGCTAAAGACCC
63 CGCCGCTAAAGACCC
22151374 GAAAGGTAGG
Statistics
Matches: 142, Mismatches: 12, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
81 6 0.04
82 44 0.31
83 89 0.63
84 3 0.02
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.20
Consensus pattern (81 bp):
TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCAAAGCATTAGCGGCGCTTTTACAGAAAACGC
CGCTAAAGACCCAGAA
Found at i:22151488 original size:39 final size:39
Alignment explanation
Indices: 22151407--22151561 Score: 193
Period size: 39 Copynumber: 3.9 Consensus size: 39
22151397 TTTGCTTTGG
* *
22151407 TTTTTTGCGGCGTTTTTTCTTAAAACCACCGCTAATGGTTC
1 TTTTTAGCGGCGTTTTAT-TTAAAA-CACCGCTAATGGTTC
*
22151448 TTTTTAGCGGCGTTTTATTTAAAACGCCGCTAATGGTTC
1 TTTTTAGCGGCGTTTTATTTAAAACACCGCTAATGGTTC
* * *
22151487 TTTTTAGCGGCGTTTTATTTAAAACGCCGCTAATGCTCC
1 TTTTTAGCGGCGTTTTATTTAAAACACCGCTAATGGTTC
* * * *
22151526 TATTTTAGCTGCGTTTTGTTAAAAACACCGCGAATG
1 T-TTTTAGCGGCGTTTTATTTAAAACACCGCTAATG
22151562 CTCGATTTTT
Statistics
Matches: 103, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
39 52 0.50
40 35 0.34
41 16 0.16
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.40
Consensus pattern (39 bp):
TTTTTAGCGGCGTTTTATTTAAAACACCGCTAATGGTTC
Found at i:22151540 original size:79 final size:80
Alignment explanation
Indices: 22151407--22151561 Score: 197
Period size: 79 Copynumber: 1.9 Consensus size: 80
22151397 TTTGCTTTGG
* * * * *
22151407 TTTTTTGCGGCGTTTTTTCTTAAAACCACCGCTAATGGTTCTTTTTAGCGGCGTTTTATTTAAAA
1 TTTTTAGCGGCGTTTTATCTTAAAACCACCGCTAATGCTCCTTTTTAGCGGCGTTTTATTAAAAA
* *
22151472 CGCCGCTAATGGTTC
66 CACCGCGAATGGTTC
* * *
22151487 TTTTTAGCGGCGTTTTAT-TTAAAA-CGCCGCTAATGCTCCTATTTTAGCTGCGTTTTGTTAAAA
1 TTTTTAGCGGCGTTTTATCTTAAAACCACCGCTAATGCTCCT-TTTTAGCGGCGTTTTATTAAAA
22151550 ACACCGCGAATG
65 ACACCGCGAATG
22151562 CTCGATTTTT
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
78 13 0.20
79 35 0.55
80 16 0.25
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.40
Consensus pattern (80 bp):
TTTTTAGCGGCGTTTTATCTTAAAACCACCGCTAATGCTCCTTTTTAGCGGCGTTTTATTAAAAA
CACCGCGAATGGTTC
Found at i:22152086 original size:26 final size:26
Alignment explanation
Indices: 22152055--22152155 Score: 157
Period size: 26 Copynumber: 3.9 Consensus size: 26
22152045 AACACACCAA
* *
22152055 TATCGCAGGAAAGCTGCCAGTAATAG
1 TATCGCAGTAGAGCTGCCAGTAATAG
* *
22152081 TATCGCAGTAGAGCTGCTAGTAACAG
1 TATCGCAGTAGAGCTGCCAGTAATAG
22152107 TATCGCAGTAGAGCTGCCAGTAATAG
1 TATCGCAGTAGAGCTGCCAGTAATAG
*
22152133 TATCGCAGCAGAGCTGCCAGTAA
1 TATCGCAGTAGAGCTGCCAGTAA
22152156 CAATATGCTT
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 68 1.00
ACGTcount: A:0.32, C:0.21, G:0.27, T:0.21
Consensus pattern (26 bp):
TATCGCAGTAGAGCTGCCAGTAATAG
Found at i:22152353 original size:27 final size:27
Alignment explanation
Indices: 22152323--22152513 Score: 169
Period size: 27 Copynumber: 7.0 Consensus size: 27
22152313 GGCGTATAAT
22152323 AGTCATTTTACCCTATGGGGATATTTC
1 AGTCATTTTACCCTATGGGGATATTTC
*
22152350 AGTCATTTTACCCTATGGGGGTATTTC
1 AGTCATTTTACCCTATGGGGATATTTC
*
22152377 -GATCATTTTACCCTATGGGGGTATTTC
1 AG-TCATTTTACCCTATGGGGATATTTC
22152404 -GATCATTTTACCCTATAGGGG-TATTT-
1 AG-TCATTTTACCCTAT-GGGGATATTTC
* ** * * *
22152430 TGATCATTTTTACTATATGAGAAAATTTC
1 AG-TCA-TTTTACCCTATGGGGATATTTC
* * *
22152459 GGTCATTTTACCCTAT-GAGAGTATTTT
1 AGTCATTTTACCCTATGGGGA-TATTTC
22152486 AGTCATTTTTACCCTATAGGGG-TATTTC
1 AGTCA-TTTTACCCTAT-GGGGATATTTC
22152514 GATCATGTAT
Statistics
Matches: 137, Mismatches: 17, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
26 2 0.01
27 96 0.70
28 36 0.26
29 1 0.01
30 2 0.01
ACGTcount: A:0.23, C:0.16, G:0.18, T:0.42
Consensus pattern (27 bp):
AGTCATTTTACCCTATGGGGATATTTC
Found at i:22152385 original size:54 final size:53
Alignment explanation
Indices: 22152328--22152519 Score: 208
Period size: 55 Copynumber: 3.5 Consensus size: 53
22152318 ATAATAGTCA
22152328 TTTTACCCTATGGGGATATTTCAGTCATTTTACCCTATGGGGGTATTTCGATCA-
1 TTTTACCCTATGGGGATATTTC-GTCATTTTACCCTATGGGGGTATTT-GATCAT
* *
22152382 TTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATAGGGGTATTTTGATCAT
1 TTTTACCCTATGGGGATATTTCG-TCATTTTACCCTATGGGGGTA-TTTGATCAT
** * * * * * *
22152437 TTTTACTATATGAGAAAATTTCGGTCATTTTACCCTATGAGAGTATTTTAGTCAT
1 TTTTACCCTATGGGGATATTTC-GTCATTTTACCCTATGGGGGTATTTGA-TCAT
22152492 TTTTACCCTATAGGGG-TATTTCGATCAT
1 TTTTACCCTAT-GGGGATATTTCG-TCAT
22152520 GTATTGACCT
Statistics
Matches: 114, Mismatches: 17, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
53 1 0.01
54 51 0.45
55 59 0.52
56 3 0.03
ACGTcount: A:0.23, C:0.16, G:0.18, T:0.43
Consensus pattern (53 bp):
TTTTACCCTATGGGGATATTTCGTCATTTTACCCTATGGGGGTATTTGATCAT
Found at i:22166357 original size:19 final size:19
Alignment explanation
Indices: 22166335--22166376 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
22166325 ATTAAAATGT
* *
22166335 AAAAATTAAATTAAAACAA
1 AAAAATAAAAATAAAACAA
*
22166354 AAAAATAAAAATAAAAGAA
1 AAAAATAAAAATAAAACAA
22166373 AAAA
1 AAAA
22166377 TAGCTAAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.14
Consensus pattern (19 bp):
AAAAATAAAAATAAAACAA
Found at i:22166375 original size:25 final size:25
Alignment explanation
Indices: 22166312--22166375 Score: 65
Period size: 25 Copynumber: 2.6 Consensus size: 25
22166302 TGCCAAAAGC
** **
22166312 AAATAAAAGAAAAATTAAAATGTAA
1 AAATAAAAGAAAAACAAAAAAATAA
* **
22166337 AAATTAAATTAAAACAAAAAAATAA
1 AAATAAAAGAAAAACAAAAAAATAA
22166362 AAATAAAAGAAAAA
1 AAATAAAAGAAAAA
22166376 ATAGCTAAAT
Statistics
Matches: 29, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.17
Consensus pattern (25 bp):
AAATAAAAGAAAAACAAAAAAATAA
Found at i:22174925 original size:13 final size:13
Alignment explanation
Indices: 22174907--22174931 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22174897 CCCCATGGAG
22174907 ATACACTCGGTTT
1 ATACACTCGGTTT
22174920 ATACACTCGGTT
1 ATACACTCGGTT
22174932 GAATAAACCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (13 bp):
ATACACTCGGTTT
Found at i:22177008 original size:82 final size:81
Alignment explanation
Indices: 22176866--22177241 Score: 386
Period size: 82 Copynumber: 4.6 Consensus size: 81
22176856 TATACAGACC
* * *
22176866 ATTTTA-CCTTTAAGGGTATTTC-GATAATTTTACCCTTCGAGGGTATCTCTATAATTTTACCCT
1 ATTTTACCCTTCAAGGGTATTTCAG-TAATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCT
22176929 TCAAGGGTATTTCGGTA
65 TCAAGGGTATTTCGGTA
* * * * *
22176946 ATGTATAACCTTCTAGGGTATTT-TGATAATTTTACCCTTCAAGGGTATTTCGATAATTTTACCC
1 AT-TTTACCCTTCAAGGGTATTTCAG-TAATTTTACCCTTCGAGGGTATTTCGATAATTTTACCC
* *
22177010 TTTGAA-GGTATTTCGATA
64 -TTCAAGGGTATTTCGGTA
*
22177028 ATTTTGCCCTTCAAGGGTATTTCAGTAATTTTACCCTTCGAGGGTATTTCGATAATTTTTACCCT
1 ATTTTACCCTTCAAGGGTATTTCAGTAATTTTACCCTTCGAGGGTATTTCGATAA-TTTTACCCT
** **
22177093 TTGAGGGTATTTTTGTA
65 TCAAGGGTATTTCGGTA
* * * *
22177110 ATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCTTTCGAGGATATTTC-AGTAATTTTTCCCT
1 ATTTTACCCTTCAAGGGTATTTCAGTAATTTTACCCTTCGAGGGTATTTCGA-TAATTTTACCCT
* * * *
22177174 TCAGGGGTAATTCAGTC
65 TCAAGGGTATTTCGGTA
** * * * *
22177191 ATTTTACCCTT-TGGAGGTAATTCGGTCATTTTACCCTTCGAGGGTAATTCG
1 ATTTTACCCTTCAAG-GGTATTTCAGTAATTTTACCCTTCGAGGGTATTTCG
22177242 GTCATTTCAC
Statistics
Matches: 247, Mismatches: 39, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
80 3 0.01
81 110 0.45
82 130 0.53
83 4 0.02
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.43
Consensus pattern (81 bp):
ATTTTACCCTTCAAGGGTATTTCAGTAATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCTT
CAAGGGTATTTCGGTA
Found at i:22177040 original size:109 final size:107
Alignment explanation
Indices: 22176866--22177236 Score: 410
Period size: 109 Copynumber: 3.4 Consensus size: 107
22176856 TATACAGACC
*
22176866 ATTTTA-CCTTTAAGGGTATTTCGATAATTTTACCCTTCGAGGGTATCTCTATAATTTTACCCTT
1 ATTTTACCCTTTAAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTC-ATAATTTTACCCTT
* * *
22176930 CAAGGGTATTTCGGTAATGTATAACCTTCTAGGGTATTTTGATA
65 CAAGGGTATTTCAGTAAT-TATAACCTTCGAGGGTATTTCGATA
* * * *
22176974 ATTTTACCCTTCAAGGGTATTTCGATAATTTTACCCTTTGAAGGTATTTCGATAATTTTGCCCTT
1 ATTTTACCCTTTAAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTC-ATAATTTTACCCTT
* *
22177039 CAAGGGTATTTCAGTAATTTTACCCTTCGAGGGTATTTCGATA
65 CAAGGGTATTTCAGTAATTATAACCTTCGAGGGTATTTCGATA
* * *
22177082 ATTTTTACCCTTTGAGGGTATTTTTG-TAATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCT
1 A-TTTTACCCTTTAAGGGTA-TTTCGATAATTTTACCCTTCGAGGGTATTTCA-TAATTTTACCC
* * * ** * *
22177146 TTCGAGGATATTTCAGTAATTTTTCCCTTC-AGGGGTAATTC-AGTC
63 TTCAAGGGTATTTCAGTAATTATAACCTTCGA-GGGTATTTCGA-TA
* * * *
22177191 ATTTTACCCTTT-GGAGGTAATTCGGTCATTTTACCCTTCGAGGGTA
1 ATTTTACCCTTTAAG-GGTATTTCGATAATTTTACCCTTCGAGGGTA
22177237 ATTCGGTCAT
Statistics
Matches: 228, Mismatches: 27, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
107 4 0.02
108 66 0.29
109 154 0.68
110 4 0.02
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.43
Consensus pattern (107 bp):
ATTTTACCCTTTAAGGGTATTTCGATAATTTTACCCTTCGAGGGTATTTCATAATTTTACCCTTC
AAGGGTATTTCAGTAATTATAACCTTCGAGGGTATTTCGATA
Found at i:22177116 original size:136 final size:135
Alignment explanation
Indices: 22176866--22177236 Score: 436
Period size: 136 Copynumber: 2.7 Consensus size: 135
22176856 TATACAGACC
* *
22176866 ATTTTACCTTT-AAGGGTATTTCGATAATTTTACCCTTCGAGGGTATCTCTA-TAATTTTACCCT
1 ATTTTACCTTTGAA-GGTATTTCGATAATTTTACCCTTCAAGGGTATTTC-AGTAATTTTACCCT
* * * *
22176929 TCAAGGGTATTTCGGTAATGTATAACCTTCT-AGGGTATTTTGATAATTTTACCCTTCAAGGGTA
64 TCGAGGGTATTTCGGTAATTTTTACCCTT-TGAGGGTATTTTGATAATTTTACCCTTCAAGGGTA
22176993 TTTC-GATA
128 TTTCAG-TA
*
22177001 ATTTTACCCTTTGAAGGTATTTCGATAATTTTGCCCTTCAAGGGTATTTCAGTAATTTTACCCTT
1 ATTTTA-CCTTTGAAGGTATTTCGATAATTTTACCCTTCAAGGGTATTTCAGTAATTTTACCCTT
* *
22177066 CGAGGGTATTTCGATAATTTTTACCCTTTGAGGGTATTTTTG-TAATTTTACCCTTCGAGGGTAT
65 CGAGGGTATTTCGGTAATTTTTACCCTTTGAGGGTA-TTTTGATAATTTTACCCTTCAAGGGTAT
22177130 TTCAGTA
129 TTCAGTA
* * * *
22177137 ATTTTACCTTTCG-AGGATATTTC-AGTAATTTTTCCCTTCAGGGGTAATTCAGTCATTTTACCC
1 ATTTTACCTTT-GAAGG-TATTTCGA-TAATTTTACCCTTCAAGGGTATTTCAGTAATTTTACCC
* * * *
22177200 TTTG-GAGGTAATTCGGTCA-TTTTACCCTTCGAGGGTA
63 TTCGAG-GGTATTTCGGTAATTTTTACCCTTTGAGGGTA
22177237 ATTCGGTCAT
Statistics
Matches: 208, Mismatches: 18, Indels: 20
0.85 0.07 0.08
Matches are distributed among these distances:
135 35 0.17
136 165 0.79
137 8 0.04
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.43
Consensus pattern (135 bp):
ATTTTACCTTTGAAGGTATTTCGATAATTTTACCCTTCAAGGGTATTTCAGTAATTTTACCCTTC
GAGGGTATTTCGGTAATTTTTACCCTTTGAGGGTATTTTGATAATTTTACCCTTCAAGGGTATTT
CAGTA
Found at i:22177242 original size:27 final size:27
Alignment explanation
Indices: 22176878--22177248 Score: 377
Period size: 27 Copynumber: 13.7 Consensus size: 27
22176868 TTTACCTTTA
*
22176878 AGGGTATTTCGATAATTTTACCCTTCG
1 AGGGTATTTCGGTAATTTTACCCTTCG
* ** *
22176905 AGGGTATCTCTATAATTTTACCCTTCA
1 AGGGTATTTCGGTAATTTTACCCTTCG
* * *
22176932 AGGGTATTTCGGTAATGTATAACCTTCT
1 AGGGTATTTCGGTAAT-TTTACCCTTCG
* * *
22176960 AGGGTATTTTGATAATTTTACCCTTCA
1 AGGGTATTTCGGTAATTTTACCCTTCG
* *
22176987 AGGGTATTTCGATAATTTTACCCTTTG
1 AGGGTATTTCGGTAATTTTACCCTTCG
* * * *
22177014 AAGGTATTTCGATAATTTTGCCCTTCA
1 AGGGTATTTCGGTAATTTTACCCTTCG
*
22177041 AGGGTATTTCAGTAATTTTACCCTTCG
1 AGGGTATTTCGGTAATTTTACCCTTCG
* *
22177068 AGGGTATTTCGATAATTTTTACCCTTTG
1 AGGGTATTTCGGTAA-TTTTACCCTTCG
**
22177096 AGGGTATTTTTGTAATTTTACCCTTCG
1 AGGGTATTTCGGTAATTTTACCCTTCG
* *
22177123 AGGGTATTTCAGTAATTTTACCTTTCG
1 AGGGTATTTCGGTAATTTTACCCTTCG
* * *
22177150 AGGATATTTCAGTAATTTTTCCCTTC-
1 AGGGTATTTCGGTAATTTTACCCTTCG
* * * *
22177176 AGGGGTAATTCAGTCATTTTACCCTTTG
1 A-GGGTATTTCGGTAATTTTACCCTTCG
* *
22177204 -GAGGTAATTCGGTCATTTTACCCTTCG
1 AG-GGTATTTCGGTAATTTTACCCTTCG
* *
22177231 AGGGTAATTCGGTCATTT
1 AGGGTATTTCGGTAATTT
22177249 CACTTATCGG
Statistics
Matches: 292, Mismatches: 46, Indels: 12
0.83 0.13 0.03
Matches are distributed among these distances:
26 2 0.01
27 244 0.84
28 46 0.16
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACCCTTCG
Found at i:22177262 original size:27 final size:27
Alignment explanation
Indices: 22176974--22177281 Score: 136
Period size: 27 Copynumber: 11.4 Consensus size: 27
22176964 TATTTTGATA
* * * * *
22176974 ATTTTACCCTTCAAGGGTATTTCGATA
1 ATTTCACCCTTCGAGGGTAATTCGGTC
* * * * * *
22177001 ATTTTACCCTTTGAAGGTATTTCGATA
1 ATTTCACCCTTCGAGGGTAATTCGGTC
** * * * *
22177028 ATTTTGCCCTTCAAGGGTATTTCAGTA
1 ATTTCACCCTTCGAGGGTAATTCGGTC
* * * *
22177055 ATTTTACCCTTCGAGGGTATTTCGATA
1 ATTTCACCCTTCGAGGGTAATTCGGTC
* * * ** *
22177082 ATTTTTACCCTTTGAGGGTATTTTTGTA
1 A-TTTCACCCTTCGAGGGTAATTCGGTC
* * * *
22177110 ATTTTACCCTTCGAGGGTATTTCAGTA
1 ATTTCACCCTTCGAGGGTAATTCGGTC
* * * * * *
22177137 ATTTTACCTTTCGAGGATATTTCAGTA
1 ATTTCACCCTTCGAGGGTAATTCGGTC
** *
22177164 ATTTTTCCCTTC-AGGGGTAATTCAGTC
1 ATTTCACCCTTCGA-GGGTAATTCGGTC
* *
22177191 ATTTTACCCTTTG-GAGGTAATTCGGTC
1 ATTTCACCCTTCGAG-GGTAATTCGGTC
*
22177218 ATTTTACCCTTCGAGGGTAATTCGGTC
1 ATTTCACCCTTCGAGGGTAATTCGGTC
* * *
22177245 ATTTCA-CTTATCGGGGGTAATTCGATC
1 ATTTCACCCT-TCGAGGGTAATTCGGTC
*
22177272 ATTTTACCCT
1 ATTTCACCCT
22177282 CGATTCGCAA
Statistics
Matches: 237, Mismatches: 37, Indels: 13
0.83 0.13 0.05
Matches are distributed among these distances:
26 4 0.02
27 207 0.87
28 26 0.11
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (27 bp):
ATTTCACCCTTCGAGGGTAATTCGGTC
Found at i:22177264 original size:54 final size:53
Alignment explanation
Indices: 22177110--22177281 Score: 168
Period size: 54 Copynumber: 3.2 Consensus size: 53
22177100 TATTTTTGTA
* * * * * * * *
22177110 ATTTTACCCTTCGAGGGTATTTCAGTAATTTTACCTTTCGAGGATATTTCAGTA
1 ATTTTACCCTTCGAGGGTAATTCAGTCATTTCA-CTTTCGGGGGTAATTCGGTC
* * *
22177164 ATTTTTCCCTTC-AGGGGTAATTCAGTCATTTTACCCTTT-GGAGGTAATTCGGTC
1 ATTTTACCCTTCGA-GGGTAATTCAGTCA-TTT-CACTTTCGGGGGTAATTCGGTC
* *
22177218 ATTTTACCCTTCGAGGGTAATTCGGTCATTTCACTTATCGGGGGTAATTCGATC
1 ATTTTACCCTTCGAGGGTAATTCAGTCATTTCACTT-TCGGGGGTAATTCGGTC
22177272 ATTTTACCCT
1 ATTTTACCCT
22177282 CGATTCGCAA
Statistics
Matches: 96, Mismatches: 16, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
52 4 0.04
53 5 0.05
54 79 0.82
55 8 0.08
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.41
Consensus pattern (53 bp):
ATTTTACCCTTCGAGGGTAATTCAGTCATTTCACTTTCGGGGGTAATTCGGTC
Found at i:22184709 original size:27 final size:27
Alignment explanation
Indices: 22184536--22184785 Score: 186
Period size: 27 Copynumber: 9.3 Consensus size: 27
22184526 TAGAGAGATC
* * *
22184536 ATTTTACCCTTATG-GGGTATTACGGTG
1 ATTTTACCCTT-CGAGGGTATTTCGGTA
* *
22184563 ATTTTACCTTTAG-GGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* **
22184589 ATTATACCCTTCGAGGGTATTTTAGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* * *
22184616 ATTTTACCCTTTGGGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* **
22184643 ATTTTTCCCTTCGAGGGTATTTTTGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* * * *
22184670 ATTTTACCTTTCAATGGTATTTGGGTA
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* * * *
22184697 ATTTTACCCTTC-AAGGTAATTCGATC
1 ATTTTACCCTTCGAGGGTATTTCGGTA
* *
22184723 AGTTTACCCTTCGTA-GGTAGTTT-GGTC
1 ATTTTACCCTTCG-AGGGTA-TTTCGGTA
* * *
22184750 ATTTTACCCTTCGGGGGTAATTCGGTC
1 ATTTTACCCTTCGAGGGTATTTCGGTA
*
22184777 CTTTTACCC
1 ATTTTACCC
22184786 AATCACAATA
Statistics
Matches: 177, Mismatches: 40, Indels: 12
0.77 0.17 0.05
Matches are distributed among these distances:
26 44 0.25
27 130 0.73
28 3 0.02
ACGTcount: A:0.19, C:0.17, G:0.20, T:0.43
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGGTA
Found at i:22187088 original size:21 final size:21
Alignment explanation
Indices: 22187061--22187110 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 21
22187051 AAGTCATCAA
*
22187061 TTCCCTTCTTTCTCTTCTGTTT
1 TTCCTTTCTTTCTC-TCTGTTT
*
22187083 TTCCTTTCTTTTTCTCT-TTT
1 TTCCTTTCTTTCTCTCTGTTT
*
22187103 TTTCTTTC
1 TTCCTTTC
22187111 CGAAAGCAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 10 0.40
21 3 0.12
22 12 0.48
ACGTcount: A:0.00, C:0.28, G:0.02, T:0.70
Consensus pattern (21 bp):
TTCCTTTCTTTCTCTCTGTTT
Found at i:22191894 original size:22 final size:22
Alignment explanation
Indices: 22191869--22191972 Score: 136
Period size: 22 Copynumber: 4.7 Consensus size: 22
22191859 TCAAAGTTTG
*
22191869 CTAAGCTCTCATGTTTAACGAA
1 CTAAGCTCTCATGTTTAACGTA
* * **
22191891 CTAAACCCTCATGGCTAACGTA
1 CTAAGCTCTCATGTTTAACGTA
**
22191913 CTAAGCTCTCATGGCTAACGTA
1 CTAAGCTCTCATGTTTAACGTA
*
22191935 CTAAGCTCTCATGTTTCACGTA
1 CTAAGCTCTCATGTTTAACGTA
22191957 CTAAGCTCTCATGTTT
1 CTAAGCTCTCATGTTT
22191973 GAACAATAAA
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 72 1.00
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (22 bp):
CTAAGCTCTCATGTTTAACGTA
Found at i:22195373 original size:20 final size:20
Alignment explanation
Indices: 22195350--22195391 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
22195340 CTAATTTCTA
22195350 AAGCAGTCACAATATTTCCT
1 AAGCAGTCACAATATTTCCT
*
22195370 AAGCAGTCACAGTATTTCCT
1 AAGCAGTCACAATATTTCCT
22195390 AA
1 AA
22195392 ATTACTGCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.29
Consensus pattern (20 bp):
AAGCAGTCACAATATTTCCT
Found at i:22196081 original size:28 final size:27
Alignment explanation
Indices: 22196035--22196087 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
22196025 GAATAGTATC
*
22196035 AGGTGAGCCTTAGCACATTAGCAGAACT
1 AGGTGAGCCTAAGCACATTA-CAGAACT
* *
22196063 AGGTGGGCCTAAGCCCATTACAGAA
1 AGGTGAGCCTAAGCACATTACAGAA
22196088 TCAGTATCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 5 0.23
28 17 0.77
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.19
Consensus pattern (27 bp):
AGGTGAGCCTAAGCACATTACAGAACT
Found at i:22201960 original size:24 final size:24
Alignment explanation
Indices: 22201933--22201995 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
22201923 AACCTAATTC
* *
22201933 TAATCAATGTTAAATATATTATGT
1 TAATAAATGCTAAATATATTATGT
**
22201957 TAATAAATGCTAAATATATTATAC
1 TAATAAATGCTAAATATATTATGT
*
22201981 TAATAAATACTAAAT
1 TAATAAATGCTAAAT
22201996 TTTCTAGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.49, C:0.06, G:0.05, T:0.40
Consensus pattern (24 bp):
TAATAAATGCTAAATATATTATGT
Found at i:22203245 original size:3 final size:3
Alignment explanation
Indices: 22203237--22203262 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
22203227 ATTGGAGTTT
22203237 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
22203263 AGGGAGAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:22203465 original size:110 final size:113
Alignment explanation
Indices: 22203326--22203580 Score: 311
Period size: 115 Copynumber: 2.3 Consensus size: 113
22203316 GAAAATAAAA
* *
22203326 AAAACTCTATTAAACTCCCAAAAATAAAAAATGGAAAATTTACTAGAATTTTTTTAATTT-T-TT
1 AAAATTCTATTAAACTCCCAAAAATAAAAAATGGAAAATTTACTAGAATTTTTTAAATTTATGTT
**** *
22203389 TTTTAA-ATAAGGAAA-ATTTTTCAAGTGATAATAAATCATTAAGGCAT
66 CAAAAAGATAAGGAAATA-TTTCCAAGTGATAATAAATCATTAAGGCAT
* * *
22203436 AAAATTCTAATAAACTCCCAAAAATAAAAATTGGAATATTTACTAGAATTTTTTAAATTTATGAG
1 AAAATTCTATTAAACTCCCAAAAATAAAAAATGGAAAATTTACTAGAATTTTTTAAATTTAT--G
* * * **
22203501 TTCAAAAAGATAAGGCAATATTTCCAAGTGATAATAAATTATTGATTCAT
64 TTCAAAAAGATAAGGAAATATTTCCAAGTGATAATAAATCATTAAGGCAT
*
22203551 AAAATTCTATTACACTCCCAAAAATAAAAA
1 AAAATTCTATTAAACTCCCAAAAATAAAAA
22203581 TAAAAATATT
Statistics
Matches: 122, Mismatches: 17, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
110 55 0.45
111 1 0.01
114 4 0.03
115 61 0.50
116 1 0.01
ACGTcount: A:0.47, C:0.11, G:0.08, T:0.35
Consensus pattern (113 bp):
AAAATTCTATTAAACTCCCAAAAATAAAAAATGGAAAATTTACTAGAATTTTTTAAATTTATGTT
CAAAAAGATAAGGAAATATTTCCAAGTGATAATAAATCATTAAGGCAT
Found at i:22204772 original size:16 final size:17
Alignment explanation
Indices: 22204753--22204793 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
22204743 CATTATAAAA
*
22204753 ACAAAAATT-TATAGTG
1 ACAAAAATTGTATAGTC
*
22204769 ACAAAAATTGTATCGTC
1 ACAAAAATTGTATAGTC
22204786 ACAAAAAT
1 ACAAAAAT
22204794 GGTTAATGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.51, C:0.12, G:0.10, T:0.27
Consensus pattern (17 bp):
ACAAAAATTGTATAGTC
Found at i:22208027 original size:27 final size:27
Alignment explanation
Indices: 22207995--22208316 Score: 373
Period size: 27 Copynumber: 12.0 Consensus size: 27
22207985 CTGTTTTGAT
* *
22207995 CGAAATACCCCCATTGGGTAAATTGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* *
22208022 CAAAATA-CCCCATAGGATAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
*
22208048 TGAAATACCCCCATAGGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
*
22208075 CGAAATACCCCCATAGGGTAAAATGAT
1 CGAAATACCCCCATAGGGTAAAATGAC
* * *
22208102 CGAAATACCCCTATAAGGTAAAATGAT
1 CGAAATACCCCCATAGGGTAAAATGAC
22208129 CGAAATA-CCCCATAGGGTAAAATGA-
1 CGAAATACCCCCATAGGGTAAAATGAC
* *** *
22208154 CTAATATACCTTTATAAGGTAAAATGAC
1 CGAA-ATACCCCCATAGGGTAAAATGAC
*
22208182 CGAAATACCCCCATAGGGTAAAATAAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* **
22208209 CAAAATACCCTGATAGGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* *
22208236 CGAAATACCCACATAGGGTAAAATGAT
1 CGAAATACCCCCATAGGGTAAAATGAC
* *
22208263 CGAAATACCCCTGA-AAGGTAAAATGAC
1 CGAAATACCCC-CATAGGGTAAAATGAC
* * *
22208290 CAAAATACCTCCATAGGGTAAATTGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
22208317 TGTTATACCC
Statistics
Matches: 248, Mismatches: 41, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
25 3 0.01
26 41 0.17
27 200 0.81
28 4 0.02
ACGTcount: A:0.43, C:0.21, G:0.16, T:0.20
Consensus pattern (27 bp):
CGAAATACCCCCATAGGGTAAAATGAC
Found at i:22208177 original size:107 final size:106
Alignment explanation
Indices: 22207991--22208311 Score: 412
Period size: 107 Copynumber: 3.0 Consensus size: 106
22207981 TACACTGTTT
* * * * *
22207991 TGATCGAAATACCCCCATTGGGTAAATTGACCAAAATACCCCATAGGATAAAATGACTGAAATAC
1 TGATCGAAATACCCCTATAGGGTAAAATGACCGAAATACCCCATAGGGTAAAATGACT-AAATAC
* *
22208056 CCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAA
65 CCTCATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAAA
* *
22208098 TGATCGAAATACCCCTATAAGGTAAAATGATCGAAATACCCCATAGGGTAAAATGACTAATATAC
1 TGATCGAAATACCCCTATAGGGTAAAATGACCGAAATACCCCATAGGGTAAAATGACTAA-ATAC
* *
22208163 CTTTATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAAA
65 CCTCATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAAA
* * * *
22208205 TAACCAAAATA-CCCTGATAGGGTAAAATGACCGAAATACCCACATAGGGTAAAATGATCGAAAT
1 TGATCGAAATACCCCT-ATAGGGTAAAATGACCGAAATACCC-CATAGGGTAAAATGA-CTAAAT
* * *
22208269 ACCCCTGA-AAGGTAAAATGACCAAAATACCTCCATAGGGTAAA
63 A-CCCTCATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAA
22208312 TTGACTGTTA
Statistics
Matches: 188, Mismatches: 21, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
106 6 0.03
107 124 0.66
108 51 0.27
109 7 0.04
ACGTcount: A:0.43, C:0.21, G:0.17, T:0.20
Consensus pattern (106 bp):
TGATCGAAATACCCCTATAGGGTAAAATGACCGAAATACCCCATAGGGTAAAATGACTAAATACC
CTCATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAAA
Found at i:22208343 original size:81 final size:79
Alignment explanation
Indices: 22207995--22208316 Score: 364
Period size: 80 Copynumber: 4.0 Consensus size: 79
22207985 CTGTTTTGAT
* * * * **
22207995 CGAAATACCCCCATTGGGTAAATTGACCAAAATACCCC-AT-AGGATAAAATGACTGAAATACCC
1 CGAAATA-CCCCATAGGGTAAAATGATCGAAATACCCCTATAAGG-TAAAATGACCAAAATA-CC
22208058 CCATAGGGTAAAATGAC
63 CCATAGGGTAAAATGAC
* *
22208075 CGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCTATAAGGTAAAATGATCGAAATACCCC
1 CGAAATA-CCCCATAGGGTAAAATGATCGAAATACCCCTATAAGGTAAAATGACCAAAATACCCC
22208140 ATAGGGTAAAATGA-
65 ATAGGGTAAAATGAC
* ** * * * * *
22208154 CTAATATACCTTTATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAAATAACCAAAATACCC
1 CGAA-ATACC-CCATAGGGTAAAATGATCGAAATACCCCTATAAGGTAAAATGACCAAAATACCC
*
22208219 TGATAGGGTAAAATGAC
64 -CATAGGGTAAAATGAC
22208236 CGAAATACCCACATAGGGTAAAATGATCGAAATACCCCTGA-AAGGTAAAATGACCAAAATACCT
1 CGAAATACCC-CATAGGGTAAAATGATCGAAATACCCCT-ATAAGGTAAAATGACCAAAATACC-
*
22208300 CCATAGGGTAAATTGAC
63 CCATAGGGTAAAATGAC
22208317 TGTTATACCC
Statistics
Matches: 206, Mismatches: 27, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.02
80 100 0.49
81 93 0.45
82 8 0.04
ACGTcount: A:0.43, C:0.21, G:0.16, T:0.20
Consensus pattern (79 bp):
CGAAATACCCCATAGGGTAAAATGATCGAAATACCCCTATAAGGTAAAATGACCAAAATACCCCA
TAGGGTAAAATGAC
Found at i:22208521 original size:26 final size:26
Alignment explanation
Indices: 22208486--22208563 Score: 102
Period size: 26 Copynumber: 3.0 Consensus size: 26
22208476 AAGTATACTA
22208486 TTACTGGCAGCTTTGCTGAGATATTG
1 TTACTGGCAGCTTTGCTGAGATATTG
* * * * *
22208512 TTACTAGCAGCTTTACTGCGATACTA
1 TTACTGGCAGCTTTGCTGAGATATTG
*
22208538 TTACTGGCAGCTTTGCTGTGATATTG
1 TTACTGGCAGCTTTGCTGAGATATTG
22208564 GTGTGTTGGC
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.38
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCTGAGATATTG
Found at i:22208715 original size:28 final size:27
Alignment explanation
Indices: 22208671--22208891 Score: 228
Period size: 28 Copynumber: 8.0 Consensus size: 27
22208661 GTATTGGTTA
22208671 CTGTATTGGGCTAAGGCCCACACTGTT
1 CTGTATTGGGCTAAGGCCCACACTGTT
* * *
22208698 CTTGTATTGGGCTGAGGCGCACACTATT
1 C-TGTATTGGGCTAAGGCCCACACTGTT
* *
22208726 ATTGTATTGGGCTAAGGCCCTCACTGTT
1 -CTGTATTGGGCTAAGGCCCACACTGTT
* * * **
22208754 ATTGTATTAGGCTAAGGTCCATGCTGTT
1 -CTGTATTGGGCTAAGGCCCACACTGTT
* *
22208782 ACTGTATTGGGCTAAGGCCCACACTATCA
1 -CTGTATTGGGCTAAGGCCCACACTGT-T
*
22208811 CTGTATTGGGCTAAGGCCCATACTGTT
1 CTGTATTGGGCTAAGGCCCACACTGTT
* *
22208838 ACTGTATTGGGCTAATGCCCACACTATT
1 -CTGTATTGGGCTAAGGCCCACACTGTT
*
22208866 ACTGTATCGGGCTAAGG-CCACACTGT
1 -CTGTATTGGGCTAAGGCCCACACTGT
22208892 ACCGTTACTG
Statistics
Matches: 161, Mismatches: 29, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
27 9 0.06
28 152 0.94
ACGTcount: A:0.21, C:0.23, G:0.24, T:0.31
Consensus pattern (27 bp):
CTGTATTGGGCTAAGGCCCACACTGTT
Found at i:22208759 original size:56 final size:55
Alignment explanation
Indices: 22208667--22208891 Score: 281
Period size: 56 Copynumber: 4.0 Consensus size: 55
22208657 CACTGTATTG
* *
22208667 GTTACTGTATTGGGCTAAGGCCCACACTGTT-CTTGTATTGGGCTGAGGCGCACACT
1 GTTACTGTATTGGGCTAAGGCCCACACTATTAC-TGTATTGGGCTAAGGC-CACACT
* * * * * * **
22208723 ATTATTGTATTGGGCTAAGGCCCTCACTGTTATTGTATTAGGCTAAGGTCCATGCT
1 GTTACTGTATTGGGCTAAGGCCCACACTATTACTGTATTGGGCTAAGG-CCACACT
* *
22208779 GTTACTGTATTGGGCTAAGGCCCACACTATCACTGTATTGGGCTAAGGCCCATACT
1 GTTACTGTATTGGGCTAAGGCCCACACTATTACTGTATTGGGCTAAGG-CCACACT
* *
22208835 GTTACTGTATTGGGCTAATGCCCACACTATTACTGTATCGGGCTAAGGCCACACT
1 GTTACTGTATTGGGCTAAGGCCCACACTATTACTGTATTGGGCTAAGGCCACACT
22208890 GT
1 GT
22208892 ACCGTTACTG
Statistics
Matches: 146, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
55 8 0.05
56 137 0.94
57 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.24, T:0.32
Consensus pattern (55 bp):
GTTACTGTATTGGGCTAAGGCCCACACTATTACTGTATTGGGCTAAGGCCACACT
Found at i:22208788 original size:84 final size:83
Alignment explanation
Indices: 22208667--22208889 Score: 297
Period size: 84 Copynumber: 2.7 Consensus size: 83
22208657 CACTGTATTG
* * *
22208667 GTTACTGTATTGGGCTAAGGCCCACACTGTT-CTTGTATTGGGCTGAGGCGCACACTATTATTGT
1 GTTACTGTATTGGGCTAAGGCCCACACTGTTAC-TGTATTGGGCTAAGGC-CACACTATCACTGT
22208731 ATTGGGCTAAGGCCC-TCACT
64 ATTGGGCTAAGGCCCAT-ACT
* * * **
22208751 GTTATTGTATTAGGCTAAGGTCCATGCTGTTACTGTATTGGGCTAAGGCCCACACTATCACTGTA
1 GTTACTGTATTGGGCTAAGGCCCACACTGTTACTGTATTGGGCTAAGG-CCACACTATCACTGTA
22208816 TTGGGCTAAGGCCCATACT
65 TTGGGCTAAGGCCCATACT
* * *
22208835 GTTACTGTATTGGGCTAATGCCCACACTATTACTGTATCGGGCTAAGGCCACACT
1 GTTACTGTATTGGGCTAAGGCCCACACTGTTACTGTATTGGGCTAAGGCCACACT
22208890 GTACCGTTAC
Statistics
Matches: 120, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
83 7 0.06
84 110 0.92
85 3 0.03
ACGTcount: A:0.22, C:0.23, G:0.24, T:0.31
Consensus pattern (83 bp):
GTTACTGTATTGGGCTAAGGCCCACACTGTTACTGTATTGGGCTAAGGCCACACTATCACTGTAT
TGGGCTAAGGCCCATACT
Found at i:22211268 original size:15 final size:14
Alignment explanation
Indices: 22211257--22211290 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
22211247 CCAATTTATT
22211257 AATAAAATATTTAA
1 AATAAAATATTTAA
22211271 AATAAAATA-TTAA
1 AATAAAATATTTAA
22211284 ATATAAA
1 A-ATAAA
22211291 TTTATATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
AATAAAATATTTAA
Found at i:22229627 original size:280 final size:280
Alignment explanation
Indices: 22229126--22229672 Score: 1076
Period size: 280 Copynumber: 2.0 Consensus size: 280
22229116 TTGACTCGAT
22229126 TTTTCATAAAAGAAAACACACCTAACTTCATGGATCTCATACGTTGGTCCTCACGTCCAAGTATG
1 TTTTCATAAAAGAAAACACACCTAACTTCATGGATCTCATACGTTGGTCCTCACGTCCAAGTATG
22229191 ATCCGGATTACCTACACAGGTCTTTCTATTGACAAAAAGCAAGAATTAATGACGAATTTCAAGAT
66 ATCCGGATTACCTACACAGGTCTTTCTATTGACAAAAAGCAAGAATTAATGACGAATTTCAAGAT
22229256 TTACTGAAATTTAGCAAGATTTTTGGGAAAACTCAAAATTGATTTGAAAGATTGTCAAAAATGAT
131 TTACTGAAATTTAGCAAGATTTTTGGGAAAACTCAAAATTGATTTGAAAGATTGTCAAAAATGAT
*
22229321 GTTAATCTAGACTCCGAGGGTTCTATTGATTTAGAAACAAGAATGCTTACTAATCTTCGCTCGTT
196 GTTAATCCAGACTCCGAGGGTTCTATTGATTTAGAAACAAGAATGCTTACTAATCTTCGCTCGTT
22229386 TAGACACGAATTTAGGTGTG
261 TAGACACGAATTTAGGTGTG
22229406 TTTTCATAAAAGAAAACACACCTAACTTCATGGATCTCATACGTTGGTCCTCACGTCCAAGTATG
1 TTTTCATAAAAGAAAACACACCTAACTTCATGGATCTCATACGTTGGTCCTCACGTCCAAGTATG
*
22229471 ATCCGGATTACCTACACGGGTCTTTCTATTGACAAAAAGCAAGAATTAATGACGAATTTCAAGAT
66 ATCCGGATTACCTACACAGGTCTTTCTATTGACAAAAAGCAAGAATTAATGACGAATTTCAAGAT
22229536 TTACTGAAATTTAGCAAGATTTTTGGGAAAACTCAAAATTGATTTGAAAGATTGTCAAAAATGAT
131 TTACTGAAATTTAGCAAGATTTTTGGGAAAACTCAAAATTGATTTGAAAGATTGTCAAAAATGAT
22229601 GTTAATCCAGACTCCGAGGGTTCTATTGATTTAGAAACAAGAATGCTTACTAATCTTCGCTCGTT
196 GTTAATCCAGACTCCGAGGGTTCTATTGATTTAGAAACAAGAATGCTTACTAATCTTCGCTCGTT
22229666 TAGACAC
261 TAGACAC
22229673 AGATTTGATA
Statistics
Matches: 265, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
280 265 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (280 bp):
TTTTCATAAAAGAAAACACACCTAACTTCATGGATCTCATACGTTGGTCCTCACGTCCAAGTATG
ATCCGGATTACCTACACAGGTCTTTCTATTGACAAAAAGCAAGAATTAATGACGAATTTCAAGAT
TTACTGAAATTTAGCAAGATTTTTGGGAAAACTCAAAATTGATTTGAAAGATTGTCAAAAATGAT
GTTAATCCAGACTCCGAGGGTTCTATTGATTTAGAAACAAGAATGCTTACTAATCTTCGCTCGTT
TAGACACGAATTTAGGTGTG
Found at i:22234257 original size:52 final size:52
Alignment explanation
Indices: 22234189--22234287 Score: 153
Period size: 52 Copynumber: 1.9 Consensus size: 52
22234179 TACCCTATGG
* ** * *
22234189 GGGTATTTCAGTAATTTTACCCATTTGGGGTATTTCGGTAATTTTACCCATC
1 GGGTATTTCAATAATTTTACCCATCAGGGGTATTTCGATAACTTTACCCATC
22234241 GGGTATTTCAATAATTTTACCCATCAGGGGTATTTCGATAACTTTAC
1 GGGTATTTCAATAATTTTACCCATCAGGGGTATTTCGATAACTTTAC
22234288 AACCTTTTCG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 42 1.00
ACGTcount: A:0.24, C:0.17, G:0.18, T:0.40
Consensus pattern (52 bp):
GGGTATTTCAATAATTTTACCCATCAGGGGTATTTCGATAACTTTACCCATC
Found at i:22234281 original size:27 final size:26
Alignment explanation
Indices: 22234177--22234287 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
22234167 TAATAGTCAG
*
22234177 TTTACCCTATGGGGGTATTTC-AGTAAT
1 TTTACCC-ATCGGGGTATTTCGA-TAAT
* *
22234204 TTTACCCATTTGGGGTATTTCGGTAAT
1 TTTACCCA-TCGGGGTATTTCGATAAT
*
22234231 TTTACCCATC-GGGTATTTCAATAAT
1 TTTACCCATCGGGGTATTTCGATAAT
*
22234256 TTTACCCATCAGGGGTATTTCGATAAC
1 TTTACCCATC-GGGGTATTTCGATAAT
22234283 TTTAC
1 TTTAC
22234288 AACCTTTTCG
Statistics
Matches: 73, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
25 23 0.32
26 2 0.03
27 48 0.66
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.41
Consensus pattern (26 bp):
TTTACCCATCGGGGTATTTCGATAAT
Found at i:22235681 original size:25 final size:25
Alignment explanation
Indices: 22235642--22235695 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
22235632 TGAACCTCAG
22235642 ACCTCCTTACAACACCTATGACGCC
1 ACCTCCTTACAACACCTATGACGCC
* * * *
22235667 ACCTCCTTGCTACACCTGTGTCGCC
1 ACCTCCTTACAACACCTATGACGCC
22235692 ACCT
1 ACCT
22235696 TGCCACTACA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.44, G:0.11, T:0.24
Consensus pattern (25 bp):
ACCTCCTTACAACACCTATGACGCC
Found at i:22240846 original size:27 final size:27
Alignment explanation
Indices: 22240649--22240830 Score: 238
Period size: 27 Copynumber: 6.7 Consensus size: 27
22240639 AATATAACCC
* * *
22240649 AAATAACCCTATAGGGTAAAGTGATTG
1 AAATACCCCCATAGGGTAAAATGATTG
*
22240676 AAATACCCCCATAGGGTAAAATAATTG
1 AAATACCCCCATAGGGTAAAATGATTG
* * **
22240703 AAATACCCCCATAAGGTAAAATAATCA
1 AAATACCCCCATAGGGTAAAATGATTG
22240730 AAATACCCCCATAGGGTAAAATGATTG
1 AAATACCCCCATAGGGTAAAATGATTG
***
22240757 AAATACCCCCATAGGGTAAAATGACCA
1 AAATACCCCCATAGGGTAAAATGATTG
* * *
22240784 AAATACCCTCATAGGGTAAAATTATCG
1 AAATACCCCCATAGGGTAAAATGATTG
22240811 AAATACCCCCATAGGGTAAA
1 AAATACCCCCATAGGGTAAA
22240831 GTGACTGTTA
Statistics
Matches: 136, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 136 1.00
ACGTcount: A:0.44, C:0.20, G:0.15, T:0.21
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGATTG
Found at i:22240846 original size:81 final size:81
Alignment explanation
Indices: 22240649--22240834 Score: 273
Period size: 81 Copynumber: 2.3 Consensus size: 81
22240639 AATATAACCC
* * ***
22240649 AAATAACCCTATAGGGTAAAGTGATTGAAATACCCCCATAGGGTAAAATAATTGAAATACCCCCA
1 AAATACCCCCATAGGGTAAAGTGATTGAAATACCCCCATAGGGTAAAATAACCAAAATACCCCCA
22240714 TAAGGTAAAATAATCA
66 TAAGGTAAAATAATCA
* * *
22240730 AAATACCCCCATAGGGTAAAATGATTGAAATACCCCCATAGGGTAAAATGACCAAAATACCCTCA
1 AAATACCCCCATAGGGTAAAGTGATTGAAATACCCCCATAGGGTAAAATAACCAAAATACCCCCA
* * *
22240795 TAGGGTAAAATTATCG
66 TAAGGTAAAATAATCA
22240811 AAATACCCCCATAGGGTAAAGTGA
1 AAATACCCCCATAGGGTAAAGTGA
22240835 CTGTTATACC
Statistics
Matches: 93, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 93 1.00
ACGTcount: A:0.44, C:0.19, G:0.16, T:0.21
Consensus pattern (81 bp):
AAATACCCCCATAGGGTAAAGTGATTGAAATACCCCCATAGGGTAAAATAACCAAAATACCCCCA
TAAGGTAAAATAATCA
Found at i:22244760 original size:17 final size:18
Alignment explanation
Indices: 22244738--22244772 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
22244728 ATCTAGGTCA
22244738 TGTGGGC-CACACGGGCG
1 TGTGGGCTCACACGGGCG
*
22244755 TGTGGGCTTACACGGGCG
1 TGTGGGCTCACACGGGCG
22244773 AACATCTCGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.11, C:0.26, G:0.46, T:0.17
Consensus pattern (18 bp):
TGTGGGCTCACACGGGCG
Found at i:22245740 original size:18 final size:17
Alignment explanation
Indices: 22245714--22245761 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 17
22245704 CAATAAAAAA
22245714 AACGTTTTGAAATTGAAT
1 AACGTTTTGAAA-TGAAT
*
22245732 AACGATTTGTAAATGAAT
1 AACGTTTTG-AAATGAAT
22245750 AACGTTTTGAAA
1 AACGTTTTGAAA
22245762 ACGAACGACA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 3 0.11
18 21 0.78
19 3 0.11
ACGTcount: A:0.42, C:0.06, G:0.17, T:0.35
Consensus pattern (17 bp):
AACGTTTTGAAATGAAT
Found at i:22257252 original size:57 final size:56
Alignment explanation
Indices: 22257152--22257342 Score: 192
Period size: 57 Copynumber: 3.4 Consensus size: 56
22257142 GTTCCTTTTC
* * * *
22257152 AGATATTGTCACAAAGGC-TTCCTTTACGGAGATTGCCATAAAGGCTTTCTTGTCTAG
1 AGAT-TTGCCACAAAGGCTTTCCTTTACAGAGATCGCCACAAAGGCTTTCTT-TCTAG
*
22257209 AG-TTTGCCACAGAGGCTTTCCTTTGACAGAGATCGCCACAAAGGCTTTTTCTTT-TAG
1 AGATTTGCCACAAAGGCTTTCCTTT-ACAGAGATCGCCACAAAGGC--TTTCTTTCTAG
* * * * *
22257266 AGATTAGCCACAAAAGCTATCCTTTAGCAG-GTTCACCACAAAGGCTTTCCTTTCTAG
1 AGATTTGCCACAAAGGCTTTCCTTTA-CAGAGATCGCCACAAAGGCTTT-CTTTCTAG
*
22257323 AGTTTTGCCACAAAGGCTTT
1 AGATTTGCCACAAAGGCTTT
22257343 TCTTCTTCTG
Statistics
Matches: 111, Mismatches: 15, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
55 14 0.13
56 12 0.11
57 57 0.51
58 22 0.20
59 6 0.05
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (56 bp):
AGATTTGCCACAAAGGCTTTCCTTTACAGAGATCGCCACAAAGGCTTTCTTTCTAG
Done.