Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62769430
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1067035 characters in sequence are not A, C, G, or T
File 83 of 206
Found at i:23708032 original size:29 final size:32
Alignment explanation
Indices: 23707976--23708038 Score: 87
Period size: 29 Copynumber: 2.1 Consensus size: 32
23707966 TCGCACTAAC
23707976 AAATTTAACAATATAAAGAGATTAAATTCCAA
1 AAATTTAACAATATAAAGAGATTAAATTCCAA
* *
23708008 AAATTTAA-ATTATAAA-A-ATTAAATTCTAA
1 AAATTTAACAATATAAAGAGATTAAATTCCAA
23708037 AA
1 AA
23708039 CTAAGAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 13 0.45
30 1 0.03
31 7 0.24
32 8 0.28
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (32 bp):
AAATTTAACAATATAAAGAGATTAAATTCCAA
Found at i:23708632 original size:19 final size:21
Alignment explanation
Indices: 23708610--23708654 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 21
23708600 AAATACATAT
* *
23708610 TTTTTATAAA-TATTTTGAA-
1 TTTTTAAAAATTACTTTGAAC
23708629 TTTTTAAAAATTACTTTGAAC
1 TTTTTAAAAATTACTTTGAAC
23708650 TTTTT
1 TTTTT
23708655 TTTGTAATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 9 0.41
20 8 0.36
21 5 0.23
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.58
Consensus pattern (21 bp):
TTTTTAAAAATTACTTTGAAC
Found at i:23709472 original size:21 final size:21
Alignment explanation
Indices: 23709438--23709480 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
23709428 ATTTGACCTA
*
23709438 TTTTTAAGTTTATTATATAAT
1 TTTTTAAGTATATTATATAAT
* *
23709459 TTTTTTAGTATATTATGTAAT
1 TTTTTAAGTATATTATATAAT
23709480 T
1 T
23709481 CATATCATGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (21 bp):
TTTTTAAGTATATTATATAAT
Found at i:23716840 original size:88 final size:88
Alignment explanation
Indices: 23716691--23716866 Score: 289
Period size: 88 Copynumber: 2.0 Consensus size: 88
23716681 GTTTATTCGA
* * * * *
23716691 TGCTAAGTCGTTATGTCCATTGCTTTCGTCATTCCGAGCTCAAAGAAACCAGGGCGTAACTATAG
1 TGCTAAGTCGTTATGTCCAGTGCATTCGTCATTCCGAGCTCAAAGAAACAAGGACATAACTATAG
23716756 ATGGAAACGTGGCGGATATAATT
66 ATGGAAACGTGGCGGATATAATT
* *
23716779 TGCTAAGTCGTTATGTCCGGTGCATTCGTCATTCTGAGCTCAAAGAAACAAGGACATAACTATAG
1 TGCTAAGTCGTTATGTCCAGTGCATTCGTCATTCCGAGCTCAAAGAAACAAGGACATAACTATAG
23716844 ATGGAAACGTGGCGGATATAATT
66 ATGGAAACGTGGCGGATATAATT
23716867 CTTGTTAGTA
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 81 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (88 bp):
TGCTAAGTCGTTATGTCCAGTGCATTCGTCATTCCGAGCTCAAAGAAACAAGGACATAACTATAG
ATGGAAACGTGGCGGATATAATT
Found at i:23719927 original size:16 final size:17
Alignment explanation
Indices: 23719901--23719932 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
23719891 AAAAAAAAAA
23719901 AAAGAAGAAGAAGAAAG
1 AAAGAAGAAGAAGAAAG
23719918 AAAG-AGAAGAAGAAA
1 AAAGAAGAAGAAGAAA
23719933 ATAACTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (17 bp):
AAAGAAGAAGAAGAAAG
Found at i:23721645 original size:19 final size:20
Alignment explanation
Indices: 23721618--23721656 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
23721608 TAGTCAGACT
23721618 AAAAAAATTACAAAA-ATTC
1 AAAAAAATTACAAAATATTC
* *
23721637 AAAATAATTATAAAATATTC
1 AAAAAAATTACAAAATATTC
23721657 TTTTTTCCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (20 bp):
AAAAAAATTACAAAATATTC
Found at i:23721717 original size:10 final size:11
Alignment explanation
Indices: 23721696--23721744 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
23721686 TCAAATATTT
23721696 AAAATTATATA
1 AAAATTATATA
23721707 AAAATTA-AT-
1 AAAATTATATA
*
23721716 AAAATTATATTG
1 AAAATTATA-TA
23721728 AAAATTATATA
1 AAAATTATATA
*
23721739 ATAATT
1 AAAATT
23721745 CTAAGTTATA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
9 7 0.21
10 3 0.09
11 14 0.42
12 9 0.27
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (11 bp):
AAAATTATATA
Found at i:23721718 original size:20 final size:22
Alignment explanation
Indices: 23721695--23721744 Score: 68
Period size: 20 Copynumber: 2.3 Consensus size: 22
23721685 TTCAAATATT
23721695 TAAAATTATA-TAAAAATTA-A
1 TAAAATTATATTAAAAATTATA
*
23721715 TAAAATTATATTGAAAATTATA
1 TAAAATTATATTAAAAATTATA
23721737 TAATAATT
1 TAA-AATT
23721745 CTAAGTTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 10 0.38
21 8 0.31
22 4 0.15
23 4 0.15
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (22 bp):
TAAAATTATATTAAAAATTATA
Found at i:23721733 original size:12 final size:11
Alignment explanation
Indices: 23721694--23721737 Score: 56
Period size: 12 Copynumber: 4.1 Consensus size: 11
23721684 ATTCAAATAT
23721694 TTAAAATTATA
1 TTAAAATTATA
*
23721705 TAAAAATTA-A
1 TTAAAATTATA
23721715 -TAAAATTATA
1 TTAAAATTATA
23721725 TTGAAAATTATA
1 TT-AAAATTATA
23721737 T
1 T
23721738 AATAATTCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
9 7 0.25
10 2 0.07
11 9 0.32
12 10 0.36
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (11 bp):
TTAAAATTATA
Found at i:23730894 original size:103 final size:103
Alignment explanation
Indices: 23730703--23731236 Score: 536
Period size: 104 Copynumber: 5.2 Consensus size: 103
23730693 GATGAACATA
* * * * * * ** * *
23730703 GGTTGTGATCTTAACTCAACTAACCTTTAAACATCAGTTGGGAACATAAGTCCATGAGTTGTTTC
1 GGTTGCGAGCTTAACTCAACTAACCTTTAAGCATCAGCTGGGAACATAGGTCCGTGAACTATTTT
*
23730768 GTAGTTGCGAGCTTAACTT-AGCTAACTCAAATAACTAGG
66 GGAGTTGCGAGCTTAA-TTCAGCTAACTCAAATAACT-GG
** * * * **
23730807 GGTTGCGAGCTTAACTCAACTAACC-TTAAGCATCAGCTAAGACCGTAGATTTGTGAACTATTTT
1 GGTTGCGAGCTTAACTCAACTAACCTTTAAGCATCAGCTGGGAACATAGGTCCGTGAACTATTTT
* *
23730871 GGAGTTGCGAGCTTGATTCAGCTAACTCAAATAAATGTG
66 GGAGTTGCGAGCTTAATTCAGCTAACTCAAATAACTG-G
* * ** **
23730910 GGTTGCGAGCTTAAGTCATCTAACCTTTAAGCATCAGCTGGGAACATAGGTCCACGGCCTATTTT
1 GGTTGCGAGCTTAACTCAACTAACCTTTAAGCATCAGCTGGGAACATAGGTCCGTGAACTATTTT
* * *
23730975 GGACTTACGAACTT-ATGTCAGCTAACTCAAATAACTGGG
66 GGAGTTGCGAGCTTAAT-TCAGCTAACTCAAATAACT-GG
* * * * * * * *
23731014 GGTTGTGAGCTTAACTTAGCTAACCTTTAAGCATCAGCTTGGAACGTTGGTCCGTGCACTGTTTT
1 GGTTGCGAGCTTAACTCAACTAACCTTTAAGCATCAGCTGGGAACATAGGTCCGTGAACTATTTT
* * * * *
23731079 AGAGTTGTGAGCTTAACTT-AGCTAACTTAAATAATTGA
66 GGAGTTGCGAGCTTAA-TTCAGCTAACTCAAATAACTGG
* * *
23731117 GGTTGCGAGCTTAACTCAACTAACCTTTAAGCATCAGCTGGGAACATAGGTCTGTGAGCTGTTTT
1 GGTTGCGAGCTTAACTCAACTAACCTTTAAGCATCAGCTGGGAACATAGGTCCGTGAACTATTTT
* * *
23731182 GGAGTTACGAGTTTAACTCAGCTAACTCAAATAACTGG
66 GGAGTTGCGAGCTTAATTCAGCTAACTCAAATAACTGG
*
23731220 AGGTTGCAAGCTTAACT
1 -GGTTGCGAGCTTAACT
23731237 TAGCTAACTC
Statistics
Matches: 346, Mismatches: 75, Indels: 18
0.79 0.17 0.04
Matches are distributed among these distances:
102 4 0.01
103 165 0.48
104 173 0.50
105 3 0.01
106 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.31
Consensus pattern (103 bp):
GGTTGCGAGCTTAACTCAACTAACCTTTAAGCATCAGCTGGGAACATAGGTCCGTGAACTATTTT
GGAGTTGCGAGCTTAATTCAGCTAACTCAAATAACTGG
Found at i:23731123 original size:207 final size:207
Alignment explanation
Indices: 23730703--23731244 Score: 624
Period size: 207 Copynumber: 2.6 Consensus size: 207
23730693 GATGAACATA
* * * * * * * * *
23730703 GGTTGTGATCTTAACTCAACTAACCTTTAAACATCAGTTGGGAACATAAGTCCATGAGTTGTTTC
1 GGTTGCGAGCTTAACTCAACTAACCTTTAAGCATCAGCTGGGAACATAGGTCCACGAGCTATTTT
* * * * * * * *
23730768 GTAGTTGCGAGCTTAACTTAGCTAACTCAAATAACTAGGGGTTGCGAGCTTAACTCAACTAACCT
66 GGACTTACGAACTTAACTCAGCTAACTCAAATAACTGGGGGTTGCGAGCTTAACTTAGCTAACCT
* ** * *
23730833 TAAGCATCAGCTAAGACCGTAGATTTGTGAACTATTTTGGAGTTGCGAGCTTGATTCAGCTAACT
131 TAAGCATCAGCTAAGAACGTAGATCCGTGAACTATTTTAGAGTTGCGAGCTTAATTCAGCTAACT
23730898 CAAATAAATGTG
196 CAAATAAATGTG
* *
23730910 GGTTGCGAGCTTAAGTCATCTAACCTTTAAGCATCAGCTGGGAACATAGGTCCACG-GCCTATTT
1 GGTTGCGAGCTTAACTCAACTAACCTTTAAGCATCAGCTGGGAACATAGGTCCACGAG-CTATTT
** *
23730974 TGGACTTACGAACTTATGTCAGCTAACTCAAATAACTGGGGGTTGTGAGCTTAACTTAGCTAACC
65 TGGACTTACGAACTTAACTCAGCTAACTCAAATAACTGGGGGTTGCGAGCTTAACTTAGCTAACC
** * * * * *
23731039 TTTAAGCATCAGCTTGGAACGTTGGTCCGTGCACTGTTTTAGAGTTGTGAGCTTAACTT-AGCTA
130 -TTAAGCATCAGCTAAGAACGTAGATCCGTGAACTATTTTAGAGTTGCGAGCTTAA-TTCAGCTA
*
23731103 ACTTAAAT-AAT-TG
193 ACTCAAATAAATGTG
*** *
23731116 AGGTTGCGAGCTTAACTCAACTAACCTTTAAGCATCAGCTGGGAACATAGGTCTGTGAGCTGTTT
1 -GGTTGCGAGCTTAACTCAACTAACCTTTAAGCATCAGCTGGGAACATAGGTCCACGAGCTATTT
* ** * *
23731181 TGGAGTTACGAGTTTAACTCAGCTAACTCAAATAACTGGAGGTTGCAAGCTTAACTTAGCTAAC
65 TGGACTTACGAACTTAACTCAGCTAACTCAAATAACTGGGGGTTGCGAGCTTAACTTAGCTAAC
23731245 TCAAATTACT
Statistics
Matches: 281, Mismatches: 49, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
206 3 0.01
207 220 0.78
208 56 0.20
209 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.31
Consensus pattern (207 bp):
GGTTGCGAGCTTAACTCAACTAACCTTTAAGCATCAGCTGGGAACATAGGTCCACGAGCTATTTT
GGACTTACGAACTTAACTCAGCTAACTCAAATAACTGGGGGTTGCGAGCTTAACTTAGCTAACCT
TAAGCATCAGCTAAGAACGTAGATCCGTGAACTATTTTAGAGTTGCGAGCTTAATTCAGCTAACT
CAAATAAATGTG
Found at i:23740572 original size:24 final size:24
Alignment explanation
Indices: 23740557--23740608 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
23740547 AATTGATGTC
*
23740557 AAATATATTATGCTAATAAATGCT
1 AAATATATTATACTAATAAATGCT
*
23740581 AAATATATTATACTAATAAATACT
1 AAATATATTATACTAATAAATGCT
23740605 AAAT
1 AAAT
23740609 CTTCTAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.52, C:0.08, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATGCT
Found at i:23748833 original size:20 final size:20
Alignment explanation
Indices: 23748695--23748834 Score: 120
Period size: 20 Copynumber: 7.0 Consensus size: 20
23748685 AATGCATAAC
* *
23748695 AGGGGCACTGAAGTGCAGAT
1 AGGGGCACCGAAGTGCAAAT
* *
23748715 AGGGGCA-CAAATGTGCAAAC
1 AGGGGCACCGAA-GTGCAAAT
* *
23748735 AGGGGCACCGTAGTGCGAAT
1 AGGGGCACCGAAGTGCAAAT
* *
23748755 AGGGGCACCGTAGTGCGAAT
1 AGGGGCACCGAAGTGCAAAT
* * * * ***
23748775 AGAGACACTGAAGTGTATGC
1 AGGGGCACCGAAGTGCAAAT
*
23748795 AGGGGCACCGAAGTACAAAT
1 AGGGGCACCGAAGTGCAAAT
23748815 AGGGGCACCGAAGTGCAAAT
1 AGGGGCACCGAAGTGCAAAT
23748835 CCCGTACAAG
Statistics
Matches: 92, Mismatches: 26, Indels: 4
0.75 0.21 0.03
Matches are distributed among these distances:
19 2 0.02
20 88 0.96
21 2 0.02
ACGTcount: A:0.33, C:0.19, G:0.35, T:0.14
Consensus pattern (20 bp):
AGGGGCACCGAAGTGCAAAT
Found at i:23755656 original size:19 final size:18
Alignment explanation
Indices: 23755632--23755667 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
23755622 GCAAATGAAT
*
23755632 CATTTCTCATTTTCATTTC
1 CATTTCT-ATTTCCATTTC
23755651 CATTTCTATTTCCATTT
1 CATTTCTATTTCCATTT
23755668 TGAGAAAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.17, C:0.25, G:0.00, T:0.58
Consensus pattern (18 bp):
CATTTCTATTTCCATTTC
Found at i:23755661 original size:12 final size:12
Alignment explanation
Indices: 23755631--23755668 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
23755621 TGCAAATGAA
23755631 TCATTTCTCATTT
1 TCATTTC-CATTT
23755644 TCATTTCCA-TT
1 TCATTTCCATTT
23755655 TCTATTTCCATTT
1 TC-ATTTCCATTT
23755668 T
1 T
23755669 GAGAAAACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 4 0.17
12 9 0.39
13 10 0.43
ACGTcount: A:0.16, C:0.24, G:0.00, T:0.61
Consensus pattern (12 bp):
TCATTTCCATTT
Found at i:23757879 original size:25 final size:25
Alignment explanation
Indices: 23757851--23757944 Score: 68
Period size: 25 Copynumber: 3.8 Consensus size: 25
23757841 ATCTATTGTA
23757851 TATTA-TTATTATATTTTTTATATAT
1 TATTATTTA-TATATTTTTTATATAT
* * * **
23757876 TATT-TTTCTA-AGCTTTTCATGCAT
1 TATTATTTATATA-TTTTTTATATAT
* * *
23757900 TATTATTTTTAAATTTATTATATAT
1 TATTATTTATATATTTTTTATATAT
23757925 TATTATTTATATGATTTTTT
1 TATTATTTATAT-ATTTTTT
23757945 TCATTCCATA
Statistics
Matches: 50, Mismatches: 14, Indels: 9
0.68 0.19 0.12
Matches are distributed among these distances:
23 1 0.02
24 14 0.28
25 28 0.56
26 7 0.14
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (25 bp):
TATTATTTATATATTTTTTATATAT
Found at i:23765806 original size:37 final size:37
Alignment explanation
Indices: 23765756--23765858 Score: 152
Period size: 37 Copynumber: 2.8 Consensus size: 37
23765746 CAATCACTCG
* *
23765756 TAAGAGTTAATCCACCCGATAACACGTCAGATGCTCA
1 TAAGAGCTAATCCACCCGATAACACGCCAGATGCTCA
23765793 TAAGAGCTAATCCACCCGATAACACGCCAGATGCTCA
1 TAAGAGCTAATCCACCCGATAACACGCCAGATGCTCA
* * * *
23765830 TAAGAGCTAGTCCAACCAAAAACACGCCA
1 TAAGAGCTAATCCACCCGATAACACGCCA
23765859 AAACAGGGAT
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.38, C:0.30, G:0.16, T:0.17
Consensus pattern (37 bp):
TAAGAGCTAATCCACCCGATAACACGCCAGATGCTCA
Found at i:23773726 original size:27 final size:27
Alignment explanation
Indices: 23773677--23774009 Score: 382
Period size: 27 Copynumber: 12.3 Consensus size: 27
23773667 CCTATCAGTC
*
23773677 ATTTTACCCTATCAAGGGTATTTCGGTA
1 ATTTTACCC-ATCGAGGGTATTTCGGTA
* *
23773705 ATTTTACCCATTGAGGGTATTTCGATA
1 ATTTTACCCATCGAGGGTATTTCGGTA
*
23773732 ATTTTACCCATCGAGGGTATTTCAGTA
1 ATTTTACCCATCGAGGGTATTTCGGTA
**
23773759 ATTTTACCCATC-AGGGGTATTTCAATA
1 ATTTTACCCATCGA-GGGTATTTCGGTA
* **
23773786 ATTTTACCCATCAAGGGTATTTTAGTA
1 ATTTTACCCATCGAGGGTATTTCGGTA
* * ** *
23773813 ATTTTACCCATCAAAGGTATTTTAGCA
1 ATTTTACCCATCGAGGGTATTTCGGTA
* * * *
23773840 ATTTTACTCGTGGAGGGTATTTTGGTA
1 ATTTTACCCATCGAGGGTATTTCGGTA
**
23773867 ATTTTACCCATCGAGGGTATTTCAATA
1 ATTTTACCCATCGAGGGTATTTCGGTA
*
23773894 ATTTTACCCAT-GAAAGGTATTTCGGTA
1 ATTTTACCCATCG-AGGGTATTTCGGTA
** *
23773921 ATTTTACCCATCGAAAGTATTTTGGTA
1 ATTTTACCCATCGAGGGTATTTCGGTA
*
23773948 ATTTTACCCATCGGGGGTATTTCGGTA
1 ATTTTACCCATCGAGGGTATTTCGGTA
*
23773975 ATTTTTACCCATCTAGGGTATTTCGGTA
1 A-TTTTACCCATCGAGGGTATTTCGGTA
23774003 ATTTTAC
1 ATTTTAC
23774010 GACCCAAGCT
Statistics
Matches: 265, Mismatches: 35, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
26 2 0.01
27 227 0.86
28 36 0.14
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.40
Consensus pattern (27 bp):
ATTTTACCCATCGAGGGTATTTCGGTA
Found at i:23776754 original size:26 final size:26
Alignment explanation
Indices: 23776717--23776810 Score: 91
Period size: 26 Copynumber: 3.5 Consensus size: 26
23776707 TAATAACGCA
* *
23776717 GCAGAGCTACCAGTACAGTATTTGTG
1 GCAGAGCCACCAGTATAGTATTTGTG
* *
23776743 GCAAAGCCACCAGTAATAG-AATTGTG
1 GCAGAGCCACCAGT-ATAGTATTTGTG
*
23776769 GCAGAGCCACTAGTATTAGTATGTGTGTG
1 GCAGAGCCACCAGTA-TAGTAT-T-TGTG
*
23776798 GTAGAGCCACCAG
1 GCAGAGCCACCAG
23776811 AAGCAGTACT
Statistics
Matches: 54, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
25 1 0.02
26 33 0.61
27 4 0.07
28 1 0.02
29 15 0.28
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (26 bp):
GCAGAGCCACCAGTATAGTATTTGTG
Found at i:23776980 original size:27 final size:27
Alignment explanation
Indices: 23776934--23777282 Score: 436
Period size: 27 Copynumber: 12.8 Consensus size: 27
23776924 CTTAGCGATC
*
23776934 ATTTTACCCTATCGAGGGTATTTCGGTA
1 ATTTTACCC-ATCGAGGGTATTTCAGTA
*
23776962 ATTTTACCCATCGGGGGTATTTC-GATA
1 ATTTTACCCATCGAGGGTATTTCAG-TA
*
23776989 ACTTTACCCATCGAGGGTATCTT-AGTA
1 ATTTTACCCATCGAGGGTAT-TTCAGTA
* *
23777016 ATTTTACCCATTGAAGGTATTTCAGTA
1 ATTTTACCCATCGAGGGTATTTCAGTA
23777043 ATTTTACCCATCGAGGGTATTTC-GATA
1 ATTTTACCCATCGAGGGTATTTCAG-TA
* * **
23777070 ATTCTACCCATTGAGGGTATTTTGGTA
1 ATTTTACCCATCGAGGGTATTTCAGTA
*
23777097 ATTTTACTCATCGAGGGTATTTCAGTA
1 ATTTTACCCATCGAGGGTATTTCAGTA
* * *
23777124 ATTTTACCCATCAAAGGTATTTCAATA
1 ATTTTACCCATCGAGGGTATTTCAGTA
** *
23777151 ATTTTACCCATCGATAGTATTTCAATA
1 ATTTTACCCATCGAGGGTATTTCAGTA
*
23777178 ATATTACCCATCGAGGGTATTTCAGTA
1 ATTTTACCCATCGAGGGTATTTCAGTA
**
23777205 ATTTTACCCATTAAGGGTATTTCAGTA
1 ATTTTACCCATCGAGGGTATTTCAGTA
23777232 ACTTTTACCCATCGAGGGTATTTC-GATA
1 A-TTTTACCCATCGAGGGTATTTCAG-TA
23777260 ATTTTTACCCATCGAGGGTATTT
1 A-TTTTACCCATCGAGGGTATTT
23777283 TGATAATTTT
Statistics
Matches: 280, Mismatches: 33, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
26 4 0.01
27 219 0.78
28 57 0.20
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (27 bp):
ATTTTACCCATCGAGGGTATTTCAGTA
Found at i:23779631 original size:26 final size:26
Alignment explanation
Indices: 23779602--23779678 Score: 109
Period size: 26 Copynumber: 3.0 Consensus size: 26
23779592 TTGTGGTTGG
* * *
23779602 TTTGACCAATTGATTCTAGTAATTGA
1 TTTGACCAACTGATTCTAGTAACTAA
23779628 TTTGACCAACTGATTCTAGTAACTAA
1 TTTGACCAACTGATTCTAGTAACTAA
* *
23779654 TTTGACCAACTAATTCTATTAACTA
1 TTTGACCAACTGATTCTAGTAACTA
23779679 TTTATTTAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.34, C:0.17, G:0.10, T:0.39
Consensus pattern (26 bp):
TTTGACCAACTGATTCTAGTAACTAA
Found at i:23805692 original size:51 final size:49
Alignment explanation
Indices: 23805612--23805799 Score: 223
Period size: 51 Copynumber: 3.7 Consensus size: 49
23805602 TGCCTATAAA
* * *
23805612 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGATAGATAATGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGA-AGAT-TTGGT
* * *
23805663 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGAAGGCTTTGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GAA-GATTTGGT
* * *
23805714 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGAACCGAAAAGTTTGAT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAGA-TTTGGT
* * *
23805764 CACGTGTTTAGTACTACGTGAAGGCTACTACGTGTA
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA
23805800 TCAAATGATA
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
50 40 0.34
51 74 0.63
52 4 0.03
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAAGATTTGGT
Found at i:23812365 original size:22 final size:21
Alignment explanation
Indices: 23812340--23812383 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
23812330 TGATAAACTT
23812340 TAATATATA-ATTATATTATTTA
1 TAATATATATATTA-ATT-TTTA
*
23812362 TAATTTATATATTAATTTTTA
1 TAATATATATATTAATTTTTA
23812383 T
1 T
23812384 CAACTTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 5 0.25
22 11 0.55
23 4 0.20
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TAATATATATATTAATTTTTA
Found at i:23813924 original size:24 final size:22
Alignment explanation
Indices: 23813897--23813961 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 22
23813887 CCCCTTATTT
23813897 TTTCACAAACAAATATTCTCTCAA
1 TTTC-CAAACAAA-ATTCTCTCAA
***
23813921 TTTCCTTCCAAAATTCTCTCAA
1 TTTCCAAACAAAATTCTCTCAA
***
23813943 TTTCCTTCCAAAATTCTCT
1 TTTCCAAACAAAATTCTCT
23813962 TAAACTCTCA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
22 29 0.76
23 5 0.13
24 4 0.11
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.40
Consensus pattern (22 bp):
TTTCCAAACAAAATTCTCTCAA
Found at i:23813939 original size:22 final size:22
Alignment explanation
Indices: 23813906--23813961 Score: 103
Period size: 22 Copynumber: 2.5 Consensus size: 22
23813896 TTTTCACAAA
23813906 CAAATATTCTCTCAATTTCCTTC
1 CAAA-ATTCTCTCAATTTCCTTC
23813929 CAAAATTCTCTCAATTTCCTTC
1 CAAAATTCTCTCAATTTCCTTC
23813951 CAAAATTCTCT
1 CAAAATTCTCT
23813962 TAAACTCTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 29 0.88
23 4 0.12
ACGTcount: A:0.29, C:0.30, G:0.00, T:0.41
Consensus pattern (22 bp):
CAAAATTCTCTCAATTTCCTTC
Found at i:23813972 original size:30 final size:30
Alignment explanation
Indices: 23813936--23813994 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
23813926 TTCCAAAATT
* *
23813936 CTCTCAATTTCCTTCCAAAATTCTCTTAAA
1 CTCTCAAATTCCTTCCAAAATCCTCTTAAA
23813966 CTCTCAAATTCCTTCCAAAATCCTCTTAA
1 CTCTCAAATTCCTTCCAAAATCCTCTTAA
23813995 TTTCCTTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.32, G:0.00, T:0.37
Consensus pattern (30 bp):
CTCTCAAATTCCTTCCAAAATCCTCTTAAA
Found at i:23813991 original size:22 final size:22
Alignment explanation
Indices: 23813966--23814018 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
23813956 TTCTCTTAAA
*
23813966 CTCTCAAATTCCTTC-CAAAAT
1 CTCTCAAATTCCTTCAAAAAAT
* *
23813987 CCTCTTAATTTCCTTCAAAAAAT
1 -CTCTCAAATTCCTTCAAAAAAT
23814010 CTCTCAAAT
1 CTCTCAAAT
23814019 CCATATTAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
22 20 0.80
23 5 0.20
ACGTcount: A:0.34, C:0.30, G:0.00, T:0.36
Consensus pattern (22 bp):
CTCTCAAATTCCTTCAAAAAAT
Found at i:23813997 original size:52 final size:52
Alignment explanation
Indices: 23813914--23814013 Score: 155
Period size: 52 Copynumber: 1.9 Consensus size: 52
23813904 AACAAATATT
* * * *
23813914 CTCTCAATTTCCTTCCAAAATTCTCTCAATTTCCTTCCAAAATTCTCTTAAA
1 CTCTCAAATTCCTTCCAAAATCCTCTCAATTTCCTTCAAAAAATCTCTTAAA
*
23813966 CTCTCAAATTCCTTCCAAAATCCTCTTAATTTCCTTCAAAAAATCTCT
1 CTCTCAAATTCCTTCCAAAATCCTCTCAATTTCCTTCAAAAAATCTCT
23814014 CAAATCCATA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.30, C:0.31, G:0.00, T:0.39
Consensus pattern (52 bp):
CTCTCAAATTCCTTCCAAAATCCTCTCAATTTCCTTCAAAAAATCTCTTAAA
Found at i:23814083 original size:28 final size:27
Alignment explanation
Indices: 23814050--23814106 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 27
23814040 ATTCAATTTC
23814050 ATTTTTTAAAGAAAATTTTAAATATTTTT
1 ATTTTTTAAA-AAAATTTTAAA-ATTTTT
* *
23814079 ATTTTTTTAAATAATTTTAAAATTTTT
1 ATTTTTTAAAAAAATTTTAAAATTTTT
23814106 A
1 A
23814107 ATATTTTCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 7 0.27
28 10 0.38
29 9 0.35
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (27 bp):
ATTTTTTAAAAAAATTTTAAAATTTTT
Found at i:23814104 original size:18 final size:18
Alignment explanation
Indices: 23814061--23814113 Score: 54
Period size: 18 Copynumber: 3.0 Consensus size: 18
23814051 TTTTTTAAAG
*
23814061 AAAATTTTAAATATTTTT
1 AAAATTTTAAATAATTTT
***
23814079 ATTTTTTTAAATAATTTT
1 AAAATTTTAAATAATTTT
*
23814097 AAAATTTTTAAT-ATTTT
1 AAAATTTTAAATAATTTT
23814114 CAACAATGGC
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
17 5 0.19
18 22 0.81
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
AAAATTTTAAATAATTTT
Found at i:23814233 original size:14 final size:15
Alignment explanation
Indices: 23814204--23814237 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
23814194 AAATTTTAAA
23814204 TTTTATTTAAGTTAT
1 TTTTATTTAAGTTAT
*
23814219 TTTTATTTATG-TAT
1 TTTTATTTAAGTTAT
23814233 TTTTA
1 TTTTA
23814238 GATAATTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.71
Consensus pattern (15 bp):
TTTTATTTAAGTTAT
Found at i:23816094 original size:24 final size:24
Alignment explanation
Indices: 23816067--23816122 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
23816057 GCATGGCTTT
* * *
23816067 CAAACTCCGTCGCCGTTCATGATG
1 CAAACACCGTCGCCATTCACGATG
23816091 CAAACACCGTCGCCATTCACGATG
1 CAAACACCGTCGCCATTCACGATG
23816115 CAAACACC
1 CAAACACC
23816123 TCCACATACA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.29, C:0.38, G:0.16, T:0.18
Consensus pattern (24 bp):
CAAACACCGTCGCCATTCACGATG
Found at i:23816458 original size:29 final size:29
Alignment explanation
Indices: 23816409--23817134 Score: 636
Period size: 29 Copynumber: 25.4 Consensus size: 29
23816399 TAATTTGTTT
* *
23816409 AAAACCC-AACCCTAACCTAATTAAATTA
1 AAAACCCTAACCCTAATCTAATTTAATTA
* *
23816437 AAAACTCTAACCCTAATTTAATTTAATTA
1 AAAACCCTAACCCTAATCTAATTTAATTA
*
23816466 AAAACCCTAAACCCTAACCTAATTTAATTA
1 AAAACCCT-AACCCTAATCTAATTTAATTA
*
23816496 AAAACTCTAACCC--A--T--TTTAA-TA
1 AAAACCCTAACCCTAATCTAATTTAATTA
23816518 AAAACCCTAA-CCTAAT-T-A---AATTA
1 AAAACCCTAACCCTAATCTAATTTAATTA
*
23816541 AAAACCCTAACCCTAATTTAATTTAATTA
1 AAAACCCTAACCCTAATCTAATTTAATTA
* *
23816570 AATACCCTAAACCCTAACCTAATTTAATTA
1 AAAACCCT-AACCCTAATCTAATTTAATTA
*
23816600 AAAACCCTAACCCTAATTTAATTTAATTA
1 AAAACCCTAACCCTAATCTAATTTAATTA
*
23816629 AAAACCCTAAACCCTAACCTAATTTAATTA
1 AAAACCCT-AACCCTAATCTAATTTAATTA
* *** *
23816659 AAAACCCTAACCCTAACCCTAACCCATTTTA
1 AAAACCCTAACCCTAA-TCTAATTTA-ATTA
* *
23816690 ATGAA----AACCCTAATCTAATTAAATTA
1 A-AAACCCTAACCCTAATCTAATTTAATTA
* *
23816716 AAAACCCTAACCCTAATTTAATTTAATTT
1 AAAACCCTAACCCTAATCTAATTTAATTA
* *
23816745 AATACCCTAAACCCTAACCTAATTTAATTA
1 AAAACCCT-AACCCTAATCTAATTTAATTA
*
23816775 AAAACCCTAACCCTAATTTAATTTAATTA
1 AAAACCCTAACCCTAATCTAATTTAATTA
*
23816804 AAACCCCTAAACCCTAACCTAACCTAATTTAATTA
1 AAAACCCT-AACCCTAA--T---CTAATTTAATTA
* *
23816839 AAAACCCTAACCTTAATTTAATTTAATTA
1 AAAACCCTAACCCTAATCTAATTTAATTA
*
23816868 AAAACCCTAAACCCTAACCTAATTTAATTTAATTA
1 AAAACCCT-AA--C---CCTAATCTAATTTAATTA
* * * *
23816903 AAAACACTAACCCTAACCTATTTTAATAA
1 AAAACCCTAACCCTAATCTAATTTAATTA
23816932 AAAACCCTAA-CCTAAT-T-A---AATTA
1 AAAACCCTAACCCTAATCTAATTTAATTA
* * * *
23816955 AAAACCCTAAACCCTAACCCATTTTAATAA
1 AAAACCCT-AACCCTAATCTAATTTAATTA
23816985 AAAACCCTAA-CCTAAT-T-A---AATTA
1 AAAACCCTAACCCTAATCTAATTTAATTA
23817008 AAAACCCTAACCCTAAT-TGAATTTAATTA
1 AAAACCCTAACCCTAATCT-AATTTAATTA
*
23817037 AAAACCCTAACCCTAA-CTCATTTTAATTA
1 AAAACCCTAACCCTAATCT-AATTTAATTA
* *
23817066 AAAACTCTAA-CCTAATTTAATTTAATTA
1 AAAACCCTAACCCTAATCTAATTTAATTA
* * * * *
23817094 AAAGCTCTAACCCTAACCCATTTTAATTA
1 AAAACCCTAACCCTAATCTAATTTAATTA
23817123 AAAACCCTAACC
1 AAAACCCTAACC
23817135 ATTAACAAAA
Statistics
Matches: 574, Mismatches: 73, Indels: 101
0.77 0.10 0.14
Matches are distributed among these distances:
21 2 0.00
22 13 0.02
23 44 0.08
24 16 0.03
25 9 0.02
26 6 0.01
27 7 0.01
28 47 0.08
29 237 0.41
30 132 0.23
31 4 0.01
32 6 0.01
34 9 0.02
35 42 0.07
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.30
Consensus pattern (29 bp):
AAAACCCTAACCCTAATCTAATTTAATTA
Found at i:23816486 original size:59 final size:59
Alignment explanation
Indices: 23816409--23817134 Score: 736
Period size: 59 Copynumber: 12.7 Consensus size: 59
23816399 TAATTTGTTT
* *
23816409 AAAACCC--AACCCTAACCTAATTAAATTAAAAACTCTAACCCTAATTTAATTTAATTA
1 AAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAATTTAATTTAATTA
*
23816466 AAAACCCTAAACCCTAACCTAATTTAATTAAAAACTCTAACCC--A--T--TTTAA-TA
1 AAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAATTTAATTTAATTA
*
23816518 AAAACCCT--A-----ACCTAATTAAATTAAAAACCCTAACCCTAATTTAATTTAATTA
1 AAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAATTTAATTTAATTA
*
23816570 AATACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAATTTAATTTAATTA
1 AAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAATTTAATTTAATTA
** *** *
23816629 AAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCCTAACCCATTTTA
1 AAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAA-TTTAATTTA-ATTA
** * * *
23816690 ATGA----AAACCCTAATCTAATTAAATTAAAAACCCTAACCCTAATTTAATTTAATTT
1 AAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAATTTAATTTAATTA
*
23816745 AATACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAATTTAATTTAATTA
1 AAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAATTTAATTTAATTA
* *
23816804 AAACCCCTAAACCCTAACCTAACCTAATTTAATTAAAAACCCTAACCTTAATTTAATTTAATTA
1 AAAACCCTAAA--C---CCTAACCTAATTTAATTAAAAACCCTAACCCTAATTTAATTTAATTA
* ** *
23816868 AAAACCCTAAACCCTAACCTAATTTAATTTAATTAAAAACACTAACCCTAACCTATTTTAA-T-
1 AAAACCCTAAACCCTAACC-----TAATTTAATTAAAAACCCTAACCCTAATTTAATTTAATTA
* *** *
23816930 -AAA----AAACCCTAACCTAATTAAATTAAAAACCCTAAACCCTAACCCATTTTAA-T-
1 AAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCT-AACCCTAATTTAATTTAATTA
* *
23816983 -AAA----AAACCCTAACCTAATTAAATTAAAAACCCTAACCCTAATTGAATTTAATTA
1 AAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAATTTAATTTAATTA
* *
23817037 AAAACCCT-AACCCTAA-CTCATTTTAATTAAAAACTCTAA-CCTAATTTAATTTAATTA
1 AAAACCCTAAACCCTAACCT-AATTTAATTAAAAACCCTAACCCTAATTTAATTTAATTA
* * * *
23817094 AAAGCTCT-AACCCTAACCCATTTTAATTAAAAACCCTAACC
1 AAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAACC
23817135 ATTAACAAAA
Statistics
Matches: 574, Mismatches: 52, Indels: 85
0.81 0.07 0.12
Matches are distributed among these distances:
45 25 0.04
47 1 0.00
49 1 0.00
50 1 0.00
51 5 0.01
52 50 0.09
53 57 0.10
54 1 0.00
55 8 0.01
56 4 0.01
57 107 0.19
58 27 0.05
59 184 0.32
60 4 0.01
61 9 0.02
62 1 0.00
63 1 0.00
64 88 0.15
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.30
Consensus pattern (59 bp):
AAAACCCTAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAATTTAATTTAATTA
Found at i:23816519 original size:22 final size:23
Alignment explanation
Indices: 23816474--23816622 Score: 120
Period size: 23 Copynumber: 5.9 Consensus size: 23
23816464 TAAAAACCCT
*
23816474 AAACCCTAACCTAATTTAATTAA
1 AAACCCTAACCCAATTTAATTAA
* *
23816497 AAACTCTAACCCATTTTAA-TAA
1 AAACCCTAACCCAATTTAATTAA
* *
23816519 AAACCCTAACCTAATTAAATTAA
1 AAACCCTAACCCAATTTAATTAA
23816542 AAACCCTAACCCTAATTTAATTTAATTA
1 AAACCCTAACCC-AATTTAA-TT-A--A
23816570 AATACCCTAAACCCTAACCTAATTTAATTAA
1 AA-ACCCT-AA--C---CC-AATTTAATTAA
23816601 AAACCCTAACCCTAATTTAATT
1 AAACCCTAACCC-AATTTAATT
23816623 TAATTAAAAA
Statistics
Matches: 104, Mismatches: 9, Indels: 25
0.75 0.07 0.18
Matches are distributed among these distances:
22 18 0.17
23 30 0.29
24 18 0.17
25 2 0.02
26 1 0.01
27 1 0.01
28 3 0.03
29 7 0.07
30 7 0.07
31 3 0.03
32 1 0.01
33 1 0.01
34 2 0.02
35 10 0.10
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (23 bp):
AAACCCTAACCCAATTTAATTAA
Found at i:23816540 original size:45 final size:46
Alignment explanation
Indices: 23816474--23816562 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 46
23816464 TAAAAACCCT
* * *
23816474 AAACCCTAACCTAATTTAATTAAAAACTCTAACCC-ATTTTAATAA
1 AAACCCTAACCTAATTAAATTAAAAACCCTAACCCTAATTTAATAA
23816519 AAACCCTAACCTAATTAAATTAAAAACCCTAACCCTAATTTAAT
1 AAACCCTAACCTAATTAAATTAAAAACCCTAACCCTAATTTAAT
23816563 TTAATTAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
45 33 0.82
46 7 0.17
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (46 bp):
AAACCCTAACCTAATTAAATTAAAAACCCTAACCCTAATTTAATAA
Found at i:23816874 original size:175 final size:170
Alignment explanation
Indices: 23816416--23817134 Score: 750
Period size: 175 Copynumber: 4.2 Consensus size: 170
23816406 TTTAAAACCC
* *
23816416 AACCCTAACCTAATTAAATTAAAAACTCTAACCCTAATTTAATTTAATTAAAAACCCTAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCTAACCCTAATTTAATTTAATTAAAAACCCTAAACCCT
*
23816481 AACCTAATTTAATTAAAAACTCTAACCC--A--T--TTTAATAAAAACCCTAAC--CTAATTAAA
66 AACCTAATTTAATTAAAAACCCTAACCCTAATTTAATTTAATAAAAACCCTAACTACTAATTAAA
23816538 TTAAAAACCCTAACCCTAATTTAATTTAATTAAATACCCTA
131 TTAAAAACCCTAACCCTAATTTAATTTAATT-AATACCCTA
23816579 AACCCTAACCTAATTTAATTAAAAACCCTAACCCTAATTTAATTTAATTAAAAACCCTAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCTAACCCTAATTTAATTTAATTAAAAACCCTAAACCCT
* * *
23816644 AACCTAATTTAATTAAAAACCCTAACCCTAACCCTAACCCATTTTAATGAAAACCCTAA-T-CTA
66 AACCTAATTTAATTAAAAACCCTAACCCTAA--TTTA---A-TTTAATAAAAACCCTAACTACTA
23816707 ATTAAATTAAAAACCCTAACCCTAATTTAATTTAATTTAATACCCTA
125 ATTAAATTAAAAACCCTAACCCTAATTTAATTTAA-TTAATACCCTA
*
23816754 AACCCTAACCTAATTTAATTAAAAACCCTAACCCTAATTTAATTTAATTAAAACCCCTAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCTAACCCTAATTTAATTTAATTAAAAACCCTAAA--C-
*
23816819 AACCTAACCTAATTTAATTAAAAACCCTAACCTTAATTTAATTTAATTAAAAACCCTAAACCCTA
63 --CCTAACCTAATTTAATTAAAAACCCTAACCCTAATTTAATTTAA-TAAAAACCCT-AA--CT-
* ** *
23816884 ACCTAATTTAATTTAATTAAAAACACTAACCCTAACCTATTTTAA-TAA-A----A
121 A-CTAA-TT-A---AATTAAAAACCCTAACCCTAATTTAATTTAATTAATACCCTA
* *** *
23816934 AACCCTAACCTAATTAAATTAAAAACCCTAAACCCTAACCCATTTTAA-T--AAA----AAACCC
1 AACCCTAACCTAATTTAATTAAAAACCCT-AACCCTAATTTAATTTAATTAAAAACCCTAAACCC
* *
23816992 TAACCTAATTAAATTAAAAACCCTAACCCTAATTGAATTTAATTAAAAACCCTAACCCTAACTCA
65 TAACCTAATTTAATTAAAAACCCTAACCCTAATTTAATTTAA-TAAAAACCCTAA--CT-ACT-A
* * * * *
23817057 TTTTAATTAAAAACTCTAA-CCTAATTTAATTTAATTAAAAGCTCT-
125 ATTAAATTAAAAACCCTAACCCTAATTTAATTTAATTAATA-CCCTA
* *
23817102 AACCCTAACCCATTTTAATTAAAAACCCTAACC
1 AACCCTAACCTAATTTAATTAAAAACCCTAACC
23817135 ATTAACAAAA
Statistics
Matches: 483, Mismatches: 32, Indels: 78
0.81 0.05 0.13
Matches are distributed among these distances:
162 12 0.02
163 107 0.22
164 1 0.00
165 1 0.00
167 8 0.02
168 35 0.07
169 52 0.11
172 1 0.00
174 8 0.02
175 133 0.28
176 4 0.01
177 1 0.00
178 4 0.01
179 1 0.00
180 63 0.13
181 14 0.03
182 4 0.01
183 2 0.00
184 2 0.00
185 3 0.01
187 27 0.06
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.30
Consensus pattern (170 bp):
AACCCTAACCTAATTTAATTAAAAACCCTAACCCTAATTTAATTTAATTAAAAACCCTAAACCCT
AACCTAATTTAATTAAAAACCCTAACCCTAATTTAATTTAATAAAAACCCTAACTACTAATTAAA
TTAAAAACCCTAACCCTAATTTAATTTAATTAATACCCTA
Found at i:23816937 original size:23 final size:23
Alignment explanation
Indices: 23816911--23817019 Score: 103
Period size: 23 Copynumber: 4.4 Consensus size: 23
23816901 TAAAAACACT
23816911 AACCCTAACCTATTTTAATAAAA
1 AACCCTAACCTATTTTAATAAAA
23816934 AACCCTAACCTAATTAAATTAA-AAACCCTA
1 AACCCTAACCT-ATT---TTAATAAA----A
*
23816964 AACCCTAACCCATTTTAATAAAA
1 AACCCTAACCTATTTTAATAAAA
* * *
23816987 AACCCTAACCTAATTAAATTAAA
1 AACCCTAACCTATTTTAATAAAA
23817010 AACCCTAACC
1 AACCCTAACC
23817020 CTAATTGAAT
Statistics
Matches: 72, Mismatches: 5, Indels: 18
0.76 0.05 0.19
Matches are distributed among these distances:
23 41 0.57
24 3 0.04
26 7 0.10
27 7 0.10
29 3 0.04
30 11 0.15
ACGTcount: A:0.49, C:0.27, G:0.00, T:0.25
Consensus pattern (23 bp):
AACCCTAACCTATTTTAATAAAA
Found at i:23820533 original size:124 final size:125
Alignment explanation
Indices: 23820336--23820601 Score: 371
Period size: 124 Copynumber: 2.1 Consensus size: 125
23820326 GCGATTTGAC
*
23820336 ACTATTTGCTCAGAAACATCAAAAAATAATTATTTCCTACATGACCAACTATAGCGAAATAGCGT
1 ACTATTTGCTCAGAAACATCAAAAAATAATTATTTCCTACATGACCAACTATAGCGAAATAGCAT
* **
23820401 CCACGAGGGCGCGATTTCACAATTTCTTCTCAT-ATAGCATCCTGATATTAGCAATTTTAT
66 CCACGAGGGCACGATTTCACAATTTCTTCTC-TGATAGCATCCTGATAGAAGCAATTTTAT
* * * *
23820461 ACTATTTGCTCATAAA-ATGTC-AAAAA-AATTATTTCTTACATGACCAACTGTAGCGAAATCGC
1 ACTATTTGCTCAGAAACA--TCAAAAAATAATTATTTCCTACATGACCAACTATAGCGAAATAGC
* *
23820523 ATCCACGAGGGCACGATTTCACAATTTCTTCTCTGATAGCATCCTGGTAGAAGCGATTTTAT
64 ATCCACGAGGGCACGATTTCACAATTTCTTCTCTGATAGCATCCTGATAGAAGCAATTTTAT
23820585 ACTATTTGAC-CAGAAAC
1 ACTATTTG-CTCAGAAAC
23820602 GTCAGCTCGA
Statistics
Matches: 125, Mismatches: 11, Indels: 10
0.86 0.08 0.07
Matches are distributed among these distances:
123 1 0.01
124 101 0.81
125 21 0.17
126 2 0.02
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (125 bp):
ACTATTTGCTCAGAAACATCAAAAAATAATTATTTCCTACATGACCAACTATAGCGAAATAGCAT
CCACGAGGGCACGATTTCACAATTTCTTCTCTGATAGCATCCTGATAGAAGCAATTTTAT
Found at i:23822822 original size:18 final size:19
Alignment explanation
Indices: 23822799--23822836 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
23822789 TCATCTTTAA
23822799 ACCAAAATATTTT-ACATT
1 ACCAAAATATTTTAACATT
* *
23822817 ACCAAAGTGTTTTAACATT
1 ACCAAAATATTTTAACATT
23822836 A
1 A
23822837 ATTTCGTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.42, C:0.16, G:0.05, T:0.37
Consensus pattern (19 bp):
ACCAAAATATTTTAACATT
Found at i:23826772 original size:17 final size:17
Alignment explanation
Indices: 23826750--23826782 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
23826740 ATTAGTGCAC
*
23826750 ATTGTCGTTGCATTTTT
1 ATTGTCATTGCATTTTT
23826767 ATTGTCATTGCATTTT
1 ATTGTCATTGCATTTT
23826783 AATGTTAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.12, G:0.15, T:0.58
Consensus pattern (17 bp):
ATTGTCATTGCATTTTT
Found at i:23829901 original size:2 final size:2
Alignment explanation
Indices: 23829894--23829941 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
23829884 GCTAAGCCAC
* *
23829894 AT AT AT AT AT AT AT AT AT AT AT AG AT AG AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23829936 AT AT AT
1 AT AT AT
23829942 CTGATTCTGA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (2 bp):
AT
Found at i:23834588 original size:42 final size:42
Alignment explanation
Indices: 23834541--23834633 Score: 102
Period size: 42 Copynumber: 2.2 Consensus size: 42
23834531 TGGTGGTGAA
*
23834541 GCTTCTGCTCG-AGCCCAAAGCCAGGTC-CAACAAGGTCCC-CTT
1 GCTTCTG-TCGAAGCCCAAAGCCA-GTCTCAACAAGG-CCCTATT
* **
23834583 GCTTCTGTTGAAGCCCAAATTCAGTCTCAACAAGGCCCTATT
1 GCTTCTGTCGAAGCCCAAAGCCAGTCTCAACAAGGCCCTATT
23834625 GCTTCTGTC
1 GCTTCTGTC
23834634 TCATCCCGTA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
41 8 0.19
42 35 0.81
ACGTcount: A:0.22, C:0.33, G:0.19, T:0.26
Consensus pattern (42 bp):
GCTTCTGTCGAAGCCCAAAGCCAGTCTCAACAAGGCCCTATT
Found at i:23840611 original size:23 final size:25
Alignment explanation
Indices: 23840584--23840644 Score: 72
Period size: 23 Copynumber: 2.5 Consensus size: 25
23840574 CACTATTAAC
* *
23840584 TTAATTTAATTATATTATAT-AT-T
1 TTAATTTAATTATATTACATAATAA
* *
23840607 TTAATTTAATCACATTACATAATAA
1 TTAATTTAATTATATTACATAATAA
23840632 TTAATTTAATTAT
1 TTAATTTAATTAT
23840645 CATATTATAT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
23 17 0.57
24 2 0.07
25 11 0.37
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (25 bp):
TTAATTTAATTATATTACATAATAA
Found at i:23845308 original size:31 final size:31
Alignment explanation
Indices: 23845273--23845337 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
23845263 AAAATAATAA
*
23845273 TCATTGAACTGTTCGAAAGTTTTTATTTAAG
1 TCATTGAACTATTCGAAAGTTTTTATTTAAG
23845304 TCATTGAACTATTCGAAAGTTTTTATTTAAG
1 TCATTGAACTATTCGAAAGTTTTTATTTAAG
23845335 TCA
1 TCA
23845338 CTGGGACGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.31, C:0.11, G:0.14, T:0.45
Consensus pattern (31 bp):
TCATTGAACTATTCGAAAGTTTTTATTTAAG
Found at i:23851401 original size:23 final size:25
Alignment explanation
Indices: 23851357--23851402 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 25
23851347 ATTTCGTTTT
*
23851357 TTAATCTCTTTTATTCTATTTTTCA
1 TTAATCTCTTTTATTATATTTTTCA
*
23851382 TTAATCT-TTTT-TTATTTTTTT
1 TTAATCTCTTTTATTATATTTTT
23851403 TATTTTTTGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.42
24 4 0.21
25 7 0.37
ACGTcount: A:0.17, C:0.11, G:0.00, T:0.72
Consensus pattern (25 bp):
TTAATCTCTTTTATTATATTTTTCA
Found at i:23855731 original size:29 final size:29
Alignment explanation
Indices: 23855699--23855756 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
23855689 GTTGAAAAGG
23855699 GATGGCAGTCACTCATCTTTGAAGGAGAT
1 GATGGCAGTCACTCATCTTTGAAGGAGAT
23855728 GATGGCAGTCACTCATCTTTGAAGGAGAT
1 GATGGCAGTCACTCATCTTTGAAGGAGAT
23855757 TCCCTCGCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (29 bp):
GATGGCAGTCACTCATCTTTGAAGGAGAT
Found at i:23856134 original size:20 final size:20
Alignment explanation
Indices: 23856095--23856134 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
23856085 GGAAAGTTTT
*
23856095 GAAAATGAAATCGTCAAAAG
1 GAAAATGAAATCGACAAAAG
23856115 GAAAATGAAAT-GACAGAAAG
1 GAAAATGAAATCGACA-AAAG
23856135 AGGAGAAGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.57, C:0.07, G:0.23, T:0.12
Consensus pattern (20 bp):
GAAAATGAAATCGACAAAAG
Found at i:23864773 original size:5 final size:5
Alignment explanation
Indices: 23864754--23864797 Score: 51
Period size: 5 Copynumber: 9.4 Consensus size: 5
23864744 TTATTTAAGT
23864754 TATACA TAT-A TATAA TATAA TAT-A -ATAA TATAA T-TAA TATAA TA
1 TATA-A TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TA
23864798 CTTATTTATT
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
3 2 0.06
4 10 0.29
5 19 0.56
6 3 0.09
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:23864831 original size:28 final size:28
Alignment explanation
Indices: 23864754--23864831 Score: 72
Period size: 28 Copynumber: 2.8 Consensus size: 28
23864744 TTATTTAAGT
* *
23864754 TATACATATATATAATATA-ATATAATAA
1 TATA-ATAAATATAATATATATTTAATAA
* *
23864782 TATAATTAATATAATACT-TATTTATTAA
1 TATAATAAATATAATA-TATATTTAATAA
23864810 GTA-AATAAATATAATATATATT
1 -TATAATAAATATAATATATATT
23864832 AACTAAAATA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
27 11 0.27
28 28 0.68
29 2 0.05
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.44
Consensus pattern (28 bp):
TATAATAAATATAATATATATTTAATAA
Found at i:23867060 original size:12 final size:11
Alignment explanation
Indices: 23867043--23867085 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 11
23867033 GATAAGAAGA
23867043 AATAATGAAAAT
1 AATAAT-AAAAT
23867055 AATAATAAAAAT
1 AATAAT-AAAAT
*
23867067 AATAGTACAAAT
1 AATAATA-AAAT
23867079 AATAATA
1 AATAATA
23867086 GGATTAATAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
11 1 0.04
12 26 0.96
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (11 bp):
AATAATAAAAT
Found at i:23869685 original size:31 final size:31
Alignment explanation
Indices: 23869643--23869718 Score: 116
Period size: 31 Copynumber: 2.5 Consensus size: 31
23869633 TGAAAAAAGA
*
23869643 TTAAGTACCAAATTAAGAATAAGCGTCAAGT
1 TTAAGTACCAAATTAAGAAAAAGCGTCAAGT
* * *
23869674 TTAGGTACCAAATTAGGAAAAAGTGTCAAGT
1 TTAAGTACCAAATTAAGAAAAAGCGTCAAGT
23869705 TTAAGTACCAAATT
1 TTAAGTACCAAATT
23869719 GGGCTAAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.28
Consensus pattern (31 bp):
TTAAGTACCAAATTAAGAAAAAGCGTCAAGT
Found at i:23871543 original size:2 final size:2
Alignment explanation
Indices: 23871536--23871561 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
23871526 CTGGGATTGG
23871536 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
23871562 TATGTGGAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23872910 original size:33 final size:32
Alignment explanation
Indices: 23872838--23872913 Score: 80
Period size: 33 Copynumber: 2.3 Consensus size: 32
23872828 ATGTTTAAAT
* * *
23872838 GTAAGACCATAGCTGGGCTATGACATTTTAAT
1 GTAAGACCATAACTGGGCTATGACATTTGAAC
* * *
23872870 GAAAAGACCATAACTGGGTTATGGCATCTTGAAC
1 G-TAAGACCATAACTGGGCTATGACAT-TTGAAC
23872904 GTAAGACCAT
1 GTAAGACCAT
23872914 GGTTGGACCA
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
32 1 0.03
33 29 0.83
34 5 0.14
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.26
Consensus pattern (32 bp):
GTAAGACCATAACTGGGCTATGACATTTGAAC
Found at i:23872982 original size:105 final size:101
Alignment explanation
Indices: 23872804--23873000 Score: 297
Period size: 105 Copynumber: 1.9 Consensus size: 101
23872794 AATTGAAAGA
* *
23872804 TAAGACCATGGTTGGACCATGGCAATGTTTAAATGTAAGACCATAGCTGGGCTATGACATTTTAA
1 TAAGACCATGGTTGGACCATGGCAATGTATAAATGTAAGACCATAGCTGGGCTATGACATTCTAA
23872869 TGAAAAGACCATAACTGGGTTATGGCATCTTGAACG
66 TGAAAAGACCATAACTGGGTTATGGCATCTTGAACG
* *
23872905 TAAGACCATGGTTGGACCATGGCAGTATAG-ATACATGTGTAAGACCATAGCTGGGCTATGGCAT
1 TAAGACCATGGTTGGACCATGGCA--AT-GTATA-A-ATGTAAGACCATAGCTGGGCTATGACAT
*
23872969 TCTAATGATAAGACCATAACTGGGTTATGGCA
61 TCTAATGAAAAGACCATAACTGGGTTATGGCA
23873001 CTACAAATGT
Statistics
Matches: 86, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
101 24 0.28
103 4 0.05
104 2 0.02
105 56 0.65
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGGCAATGTATAAATGTAAGACCATAGCTGGGCTATGACATTCTAA
TGAAAAGACCATAACTGGGTTATGGCATCTTGAACG
Found at i:23872986 original size:33 final size:32
Alignment explanation
Indices: 23872942--23873066 Score: 108
Period size: 33 Copynumber: 3.8 Consensus size: 32
23872932 TAGATACATG
23872942 TGTAAGACCATAGCTGGGCTATGGCATTCTAA
1 TGTAAGACCATAGCTGGGCTATGGCATTCTAA
* * * *
23872974 TGATAAGACCATAACTGGGTTATGGCACTACAAA
1 TG-TAAGACCATAGCTGGGCTATGGCA-TTCTAA
* * * * *
23873008 TGTAAGATCATGGCAGGGCCATGGCAATAC-ATA
1 TGTAAGACCATAGCTGGGCTATGGC-ATTCTA-A
* *
23873041 TGTAAGACCATAGTTGGACTATGGCA
1 TGTAAGACCATAGCTGGGCTATGGCA
23873067 CAAAAAGAAC
Statistics
Matches: 73, Mismatches: 16, Indels: 8
0.75 0.16 0.08
Matches are distributed among these distances:
32 4 0.05
33 62 0.85
34 7 0.10
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.25
Consensus pattern (32 bp):
TGTAAGACCATAGCTGGGCTATGGCATTCTAA
Found at i:23873013 original size:105 final size:101
Alignment explanation
Indices: 23872804--23873063 Score: 294
Period size: 105 Copynumber: 2.6 Consensus size: 101
23872794 AATTGAAAGA
* *
23872804 TAAGACCATGGTTGGACCATGGCAATGTTTAAATGTAAGACCATAGCTGGGCTATGACATTTTAA
1 TAAGACCATGGTTGGACCATGGCAATGTATAAATGTAAGACCATAGCTGGGCTATGACATTCTAA
**
23872869 TGAAAAGACCATAACTGGGTTATGGCATCTTGAACG
66 TGAAAAGACCATAACTGGGTTATGGCATCTCAAACG
* *
23872905 TAAGACCATGGTTGGACCATGGCAGTATAG-ATACATGTGTAAGACCATAGCTGGGCTATGGCAT
1 TAAGACCATGGTTGGACCATGGCA--AT-GTATA-A-ATGTAAGACCATAGCTGGGCTATGACAT
* *
23872969 TCTAATGATAAGACCATAACTGGGTTATGGCA-CTACAAATG
61 TCTAATGAAAAGACCATAACTGGGTTATGGCATCT-CAAACG
* ** * * * * *
23873010 TAAGATCATGGCAGGGCCATGGCAA--TACATATGTAAGACCATAGTTGGACTATG
1 TAAGACCATGGTTGGACCATGGCAATGTATAAATGTAAGACCATAGCTGGGCTATG
23873064 GCACAAAAAG
Statistics
Matches: 135, Mismatches: 17, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
99 21 0.16
101 26 0.19
103 5 0.04
104 4 0.03
105 79 0.59
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.26
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGGCAATGTATAAATGTAAGACCATAGCTGGGCTATGACATTCTAA
TGAAAAGACCATAACTGGGTTATGGCATCTCAAACG
Found at i:23875176 original size:2 final size:2
Alignment explanation
Indices: 23875169--23875208 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
23875159 TTCGTGCTTT
23875169 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
23875209 GATTATAGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:23878783 original size:56 final size:56
Alignment explanation
Indices: 23878697--23878803 Score: 196
Period size: 56 Copynumber: 1.9 Consensus size: 56
23878687 TATAGATTGC
*
23878697 AAATTAATTATTCATGAGCAATATTCAAATTAAAAGTGATGATTTATCATCTTACA
1 AAATTAATTATTCATAAGCAATATTCAAATTAAAAGTGATGATTTATCATCTTACA
*
23878753 AAATTAATTATTCATAAGCACTATTCAAATTAAAAGTGATGATTTATCATC
1 AAATTAATTATTCATAAGCAATATTCAAATTAAAAGTGATGATTTATCATC
23878804 CAATGGATAC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 49 1.00
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.37
Consensus pattern (56 bp):
AAATTAATTATTCATAAGCAATATTCAAATTAAAAGTGATGATTTATCATCTTACA
Found at i:23879329 original size:29 final size:29
Alignment explanation
Indices: 23879291--23879385 Score: 109
Period size: 30 Copynumber: 3.2 Consensus size: 29
23879281 TTTTTAAAAA
* * *
23879291 AAATTGCATTTCGACCCCTAAATTTTTTG
1 AAATTACATTTTGACCCCTAAATTTCTTG
* * *
23879320 AAATTACATTTTAACCCTTAAAATTTCTCG
1 AAATTACATTTTGACCCCT-AAATTTCTTG
*
23879350 AAATTACATTTTGACCTCTAAACTTTCTTG
1 AAATTACATTTTGACCCCTAAA-TTTCTTG
23879380 AAATTA
1 AAATTA
23879386 TGTTTTGGCC
Statistics
Matches: 54, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
29 18 0.33
30 36 0.67
ACGTcount: A:0.34, C:0.19, G:0.06, T:0.41
Consensus pattern (29 bp):
AAATTACATTTTGACCCCTAAATTTCTTG
Found at i:23879724 original size:21 final size:20
Alignment explanation
Indices: 23879700--23879750 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 20
23879690 CAACCAAGAG
23879700 GCAAGAAAAAAGAAAAAACAA
1 GCAAGAAAAAAGAAAAAA-AA
*
23879721 GCAAGCAAAAAGAAAAAAAA
1 GCAAGAAAAAAGAAAAAAAA
23879741 G-AAGAAAAAA
1 GCAAGAAAAAA
23879751 TAGCAAAGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 8 0.29
20 3 0.11
21 17 0.61
ACGTcount: A:0.76, C:0.08, G:0.16, T:0.00
Consensus pattern (20 bp):
GCAAGAAAAAAGAAAAAAAA
Found at i:23880101 original size:14 final size:12
Alignment explanation
Indices: 23880081--23880135 Score: 76
Period size: 12 Copynumber: 4.5 Consensus size: 12
23880071 GCAGGGCAGA
23880081 AAAAAAAGAGAGG
1 AAAAAAAGAGA-G
23880094 AGAAAAAAGAGAG
1 A-AAAAAAGAGAG
23880107 AAAAAAAGAGA-
1 AAAAAAAGAGAG
*
23880118 AAAAAAAGAAAG
1 AAAAAAAGAGAG
23880130 AAAAAA
1 AAAAAA
23880136 GGAAAAAAGG
Statistics
Matches: 39, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
11 10 0.26
12 16 0.41
13 3 0.08
14 10 0.26
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (12 bp):
AAAAAAAGAGAG
Found at i:23880109 original size:11 final size:11
Alignment explanation
Indices: 23880083--23880154 Score: 64
Period size: 11 Copynumber: 6.7 Consensus size: 11
23880073 AGGGCAGAAA
23880083 AAAAAGAGAGGAG
1 AAAAA-AGA-GAG
23880096 AAAAAAGAGAG
1 AAAAAAGAGAG
23880107 AAAAAA-AGAG
1 AAAAAAGAGAG
*
23880117 AAAAAAAAGA-
1 AAAAAAGAGAG
*
23880127 AAGAAAAAAG-G
1 AA-AAAAGAGAG
23880138 AAAAAAG-GA-
1 AAAAAAGAGAG
23880147 AAAAAAGA
1 AAAAAAGA
23880155 AAAAAGAGAA
Statistics
Matches: 53, Mismatches: 1, Indels: 13
0.79 0.01 0.19
Matches are distributed among these distances:
9 8 0.15
10 16 0.30
11 21 0.40
12 3 0.06
13 5 0.09
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (11 bp):
AAAAAAGAGAG
Found at i:23880121 original size:9 final size:9
Alignment explanation
Indices: 23880093--23880168 Score: 74
Period size: 8 Copynumber: 9.0 Consensus size: 9
23880083 AAAAAGAGAG
23880093 GAGAAAAAA
1 GAGAAAAAA
23880102 GAGAGAAAAA
1 GAGA-AAAAA
* *
23880112 AAGAGAAAA
1 GAGAAAAAA
*
23880121 -A-AAAGAA
1 GAGAAAAAA
23880128 -AGAAAAAA
1 GAGAAAAAA
23880136 G-GAAAAAA
1 GAGAAAAAA
23880144 G-GAAAAAA
1 GAGAAAAAA
23880152 -AGAAAAAA
1 GAGAAAAAA
23880160 GAGAAAAAA
1 GAGAAAAAA
23880169 AAAGGTTCAA
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
7 5 0.09
8 28 0.49
9 16 0.28
10 8 0.14
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (9 bp):
GAGAAAAAA
Found at i:23880361 original size:17 final size:16
Alignment explanation
Indices: 23880305--23880362 Score: 55
Period size: 17 Copynumber: 3.6 Consensus size: 16
23880295 TTTTATGCAT
* *
23880305 TTTTATATTT-TTGTA
1 TTTTATTTTTATTTTA
23880320 TTTATATTTTTATTTTA
1 TTT-TATTTTTATTTTA
* *
23880337 ATTCATTTTTAATTTTA
1 TTTTATTTTT-ATTTTA
23880354 TTTTATTTT
1 TTTTATTTT
23880363 AAATAATTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
15 3 0.09
16 12 0.35
17 19 0.56
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (16 bp):
TTTTATTTTTATTTTA
Found at i:23880813 original size:21 final size:22
Alignment explanation
Indices: 23880779--23880821 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
23880769 TTCGTCTTTC
23880779 AAAATTCTCATGTTTTCAAAAA
1 AAAATTCTCATGTTTTCAAAAA
*
23880801 AAAATTCT-GTGTTTTCAAAAA
1 AAAATTCTCATGTTTTCAAAAA
23880822 TTTTCGTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.44, C:0.12, G:0.07, T:0.37
Consensus pattern (22 bp):
AAAATTCTCATGTTTTCAAAAA
Found at i:23880844 original size:23 final size:22
Alignment explanation
Indices: 23880817--23880860 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
23880807 CTGTGTTTTC
*
23880817 AAAAATTTTCGTATTTCAAAAA
1 AAAAAATTTCGTATTTCAAAAA
*
23880839 AAAAAATTTCGTGTTTCAAAAA
1 AAAAAATTTCGTATTTCAAAAA
23880861 TCCTCGTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.50, C:0.09, G:0.07, T:0.34
Consensus pattern (22 bp):
AAAAAATTTCGTATTTCAAAAA
Found at i:23880867 original size:17 final size:18
Alignment explanation
Indices: 23880840--23881084 Score: 163
Period size: 18 Copynumber: 13.9 Consensus size: 18
23880830 TTTCAAAAAA
23880840 AAAAATT-TCGTG-TTTC
1 AAAAATTCTCGTGTTTTC
*
23880856 AAAAATCCTCGTGTTTTC
1 AAAAATTCTCGTGTTTTC
*
23880874 AAAAATTCTGGTG-TTTC
1 AAAAATTCTCGTGTTTTC
*
23880891 AAAAATTTTCGTGTTTTC
1 AAAAATTCTCGTGTTTTC
* *
23880909 AAAAATTC-CG-GTGATCC
1 AAAAATTCTCGTGT-TTTC
* *
23880926 AAAAATTTTTGTGTTTTC
1 AAAAATTCTCGTGTTTTC
23880944 TAAAAATT-TCCGTG-TTTC
1 -AAAAATTCT-CGTGTTTTC
* *
23880962 AAAAATTTTTGTGTTTTC
1 AAAAATTCTCGTGTTTTC
*
23880980 ACAAATT-TACGTGTTTTC
1 AAAAATTCT-CGTGTTTTC
**
23880998 AACGA--CT-GTAGTCTTTC
1 AAAAATTCTCGT-GT-TTTC
* * *
23881015 ACAAATTTTCGTGTTTTA
1 AAAAATTCTCGTGTTTTC
* * *
23881033 AAAAATTTTTGTGTTTTGA
1 AAAAATTCTCGTGTTTT-C
*
23881052 AAAAATTCTCATG-TTTC
1 AAAAATTCTCGTGTTTTC
*
23881069 AAAAATTGTCGTGTTT
1 AAAAATTCTCGTGTTT
23881085 ATAAAAAAAT
Statistics
Matches: 178, Mismatches: 32, Indels: 36
0.72 0.13 0.15
Matches are distributed among these distances:
15 2 0.01
16 10 0.06
17 60 0.34
18 78 0.44
19 26 0.15
20 2 0.01
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.44
Consensus pattern (18 bp):
AAAAATTCTCGTGTTTTC
Found at i:23880873 original size:18 final size:17
Alignment explanation
Indices: 23880840--23881125 Score: 141
Period size: 18 Copynumber: 16.2 Consensus size: 17
23880830 TTTCAAAAAA
23880840 AAAAATT-TCGTGTTTC
1 AAAAATTCTCGTGTTTC
*
23880856 AAAAATCCTCGTGTTTTC
1 AAAAATTCTCGTG-TTTC
*
23880874 AAAAATTCTGGTGTTTC
1 AAAAATTCTCGTGTTTC
*
23880891 AAAAATTTTCGTGTTTTC
1 AAAAATTCTCGTG-TTTC
* *
23880909 AAAAATTC-CGGTGATCC
1 AAAAATTCTC-GTGTTTC
* *
23880926 AAAAATTTTTGTGTTTTC
1 AAAAATTCTCGTG-TTTC
23880944 TAAAAATT-TCCGTGTTTC
1 -AAAAATTCT-CGTGTTTC
* *
23880962 AAAAATTTTTGTGTTTTC
1 AAAAATTCTCGTG-TTTC
*
23880980 ACAAATT-TACGTGTTTTC
1 AAAAATTCT-CGTG-TTTC
** * * * *
23880998 AACGACTGTAGTCTTTC
1 AAAAATTCTCGTGTTTC
* * *
23881015 ACAAATTTTCGTGTTTTA
1 AAAAATTCTCGTG-TTTC
* * *
23881033 AAAAATTTTTGTGTTTTGA
1 AAAAATTCTCGTG-TTT-C
*
23881052 AAAAATTCTCATGTTTC
1 AAAAATTCTCGTGTTTC
* *
23881069 AAAAATTGTCGTGTTTATAA
1 AAAAATTCTCGTG-TT-T-C
*
23881089 AAAAATT-TTGTGTTTC
1 AAAAATTCTCGTGTTTC
* * *
23881105 TAAAATTTTTGTGTTTC
1 AAAAATTCTCGTGTTTC
23881122 AAAA
1 AAAA
23881126 TTTTCATTTA
Statistics
Matches: 209, Mismatches: 43, Indels: 35
0.73 0.15 0.12
Matches are distributed among these distances:
16 12 0.06
17 78 0.37
18 85 0.41
19 27 0.13
20 7 0.03
ACGTcount: A:0.31, C:0.12, G:0.13, T:0.45
Consensus pattern (17 bp):
AAAAATTCTCGTGTTTC
Found at i:23880874 original size:40 final size:40
Alignment explanation
Indices: 23880755--23880913 Score: 133
Period size: 39 Copynumber: 4.1 Consensus size: 40
23880745 TAACAAAACA
* *
23880755 AAAATAAAAAAGATTTCGTCTTTC-AAAATTCTCATGTTTTC
1 AAAA-AAAAAA-ATTTCGTGTTTCAAAAATTCTCGTGTTTTC
* *
23880796 --AAAAAAAAA-TTCTGTGTTTTCAAAAATTTTCGT-ATTTC
1 AAAAAAAAAAATTTC-GTG-TTTCAAAAATTCTCGTGTTTTC
*
23880834 AAAAAAAAAAATTTCGTGTTTCAAAAATCCTCGTGTTTTC
1 AAAAAAAAAAATTTCGTGTTTCAAAAATTCTCGTGTTTTC
* *
23880874 ------AAAAATTCTGGTGTTTCAAAAATTTTCGTGTTTTC
1 AAAAAAAAAAATT-TCGTGTTTCAAAAATTCTCGTGTTTTC
23880909 AAAAA
1 AAAAA
23880914 TTCCGGTGAT
Statistics
Matches: 95, Mismatches: 10, Indels: 27
0.72 0.08 0.20
Matches are distributed among these distances:
34 7 0.07
35 24 0.25
36 3 0.03
37 3 0.03
38 14 0.15
39 25 0.26
40 16 0.17
41 3 0.03
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (40 bp):
AAAAAAAAAAATTTCGTGTTTCAAAAATTCTCGTGTTTTC
Found at i:23880888 original size:35 final size:34
Alignment explanation
Indices: 23880840--23881130 Score: 226
Period size: 36 Copynumber: 8.3 Consensus size: 34
23880830 TTTCAAAAAA
**
23880840 AAAAATTTCGTGTTTCAAAAATCCTCGTGTTTTC
1 AAAAATTTCGTGTTTCAAAAATTTTCGTGTTTTC
*
23880874 AAAAATTCTGGTGTTTCAAAAATTTTCGTGTTTTC
1 AAAAATT-TCGTGTTTCAAAAATTTTCGTGTTTTC
* * * *
23880909 AAAAATTCCGGTGATCCAAAAATTTTTGTGTTTTC
1 AAAAATTTC-GTGTTTCAAAAATTTTCGTGTTTTC
*
23880944 TAAAAATTTCCGTGTTTCAAAAATTTTTGTGTTTTC
1 -AAAAATTT-CGTGTTTCAAAAATTTTCGTGTTTTC
* ** * * * *
23880980 ACAAATTTACGTGTTTTCAACGACTGTAGT-CTTTC
1 AAAAATTT-CGTG-TTTCAAAAATTTTCGTGTTTTC
* * * *
23881015 ACAAATTTTCGTGTTTTAAAAAATTTTTGTGTTTTGA
1 A-AAAATTTCGTG-TTTCAAAAATTTTCGTGTTTT-C
* * *
23881052 AAAAATTCTCATGTTTCAAAAATTGTCGTGTTTATAA
1 AAAAATT-TCGTGTTTCAAAAATTTTCGTGTTT-T-C
* * *
23881089 AAAAATTTTGTGTTTCTAAAATTTTTGTG-TTTC
1 AAAAATTTCGTGTTTCAAAAATTTTCGTGTTTTC
*
23881122 AAAATTTTC
1 AAAAATTTC
23881131 ATTTAAAAAA
Statistics
Matches: 204, Mismatches: 43, Indels: 21
0.76 0.16 0.08
Matches are distributed among these distances:
33 7 0.03
34 8 0.04
35 86 0.42
36 88 0.43
37 15 0.07
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (34 bp):
AAAAATTTCGTGTTTCAAAAATTTTCGTGTTTTC
Found at i:23881109 original size:17 final size:17
Alignment explanation
Indices: 23880840--23881129 Score: 77
Period size: 17 Copynumber: 16.5 Consensus size: 17
23880830 TTTCAAAAAA
*
23880840 AAAAATTTCGTGTTTC-
1 AAAAATTTTGTGTTTCT
* *
23880856 AAAAATCCTCGTGTTT-T
1 AAAAAT-TTTGTGTTTCT
*
23880873 CAAAAATTCTGGTGTTTC-
1 -AAAAATT-TTGTGTTTCT
23880891 AAAAATTTTCGTGTTT-T
1 AAAAATTTT-GTGTTTCT
** * *
23880908 CAAAAATTCCG-GTGATCC
1 -AAAAATTTTGTGT-TTCT
23880926 AAAAATTTTTGTGTTTTCT
1 AAAAA-TTTTGTG-TTTCT
*
23880945 AAAAATTTCCGTGTTTC-
1 AAAAATTT-TGTGTTTCT
23880962 AAAAATTTTTGTGTTT-T
1 AAAAA-TTTTGTGTTTCT
* *
23880979 CACAAATTTACGTGTTT-T
1 -AAAAATTT-TGTGTTTCT
* * * * *
23880997 CAACGACTGTAGTCTTTC-
1 -AA-AAATTTTGTGTTTCT
*
23881015 ACAAATTTTCGTGTTT-T
1 AAAAATTTT-GTGTTTCT
23881032 AAAAAATTTTTGTGTTT-T
1 -AAAAA-TTTTGTGTTTCT
**
23881050 GAAAAAATTCTCATGTTTC-
1 --AAAAATT-TTGTGTTTCT
* *
23881069 AAAAATTGTCGTGTTTAT
1 AAAAATT-TTGTGTTTCT
23881087 AAAAAAATTTTGTGTTTCT
1 --AAAAATTTTGTGTTTCT
*
23881106 AAAATTTTTGTGTTTC-
1 AAAAATTTTGTGTTTCT
23881122 -AAAATTTT
1 AAAAATTTT
23881130 CATTTAAAAA
Statistics
Matches: 206, Mismatches: 38, Indels: 61
0.68 0.12 0.20
Matches are distributed among these distances:
15 7 0.03
16 12 0.06
17 77 0.37
18 64 0.31
19 38 0.18
20 8 0.04
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.46
Consensus pattern (17 bp):
AAAAATTTTGTGTTTCT
Found at i:23882333 original size:106 final size:106
Alignment explanation
Indices: 23882160--23882359 Score: 355
Period size: 106 Copynumber: 1.9 Consensus size: 106
23882150 ATTGGAAAAC
23882160 CATTAACTTAATATTCATCTGATGCAGCTTAAGGTCAAAATATTCCACTAAAGCCATTATAATCC
1 CATTAACTTAATATTCATCTGATGCAGCTTAAGGTCAAAATATTCCACTAAAGCCATTATAATCC
23882225 TTTCTCTAGTGGACCTTTTTTAATGACATCCATTGATCATA
66 TTTCTCTAGTGGACCTTTTTTAATGACATCCATTGATCATA
* * * * *
23882266 CATTAACTTAATATTCATCTGGTGTAGCTTAATGTCAAAATATTCCACTAAATCCTTTATAATCC
1 CATTAACTTAATATTCATCTGATGCAGCTTAAGGTCAAAATATTCCACTAAAGCCATTATAATCC
23882331 TTTCTCTAGTGGACCTTTTTTAATGACAT
66 TTTCTCTAGTGGACCTTTTTTAATGACAT
23882360 TCGTTCATGA
Statistics
Matches: 89, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
106 89 1.00
ACGTcount: A:0.31, C:0.20, G:0.10, T:0.39
Consensus pattern (106 bp):
CATTAACTTAATATTCATCTGATGCAGCTTAAGGTCAAAATATTCCACTAAAGCCATTATAATCC
TTTCTCTAGTGGACCTTTTTTAATGACATCCATTGATCATA
Found at i:23886172 original size:17 final size:18
Alignment explanation
Indices: 23886150--23886185 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
23886140 AGTGAACGAA
*
23886150 AAATAATCAATA-AATAC
1 AAATAAGCAATACAATAC
23886167 AAATAAGCAATACAATAC
1 AAATAAGCAATACAATAC
23886185 A
1 A
23886186 CATGAGAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.64, C:0.14, G:0.03, T:0.19
Consensus pattern (18 bp):
AAATAAGCAATACAATAC
Found at i:23891790 original size:24 final size:25
Alignment explanation
Indices: 23891755--23891802 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
23891745 TTATGAAATT
23891755 TAATATTAATTA-TTAAATTATATG
1 TAATATTAATTATTTAAATTATATG
23891779 TAATAATT-ATTATTTTAAATTATA
1 TAAT-ATTAATTA-TTTAAATTATA
23891803 CAAATTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 8 0.38
25 3 0.14
26 10 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (25 bp):
TAATATTAATTATTTAAATTATATG
Found at i:23891985 original size:120 final size:119
Alignment explanation
Indices: 23891850--23892131 Score: 450
Period size: 120 Copynumber: 2.4 Consensus size: 119
23891840 TTAAATTATT
* * *
23891850 TTAAATAATATATTTTAATTAAAAAATATTTAATATTAATTAT-TTCAAATTT-TCA-TTTACAG
1 TTAAAT-ATATATTTTAATTATAATATATTTAATAATAATTATGTT--AATTTAT-ATTTTACAG
23891912 TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTA
62 TATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTA
23891970 TTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTAT
1 TTAAA-TATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTAT
23892035 CATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTA
65 CATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTA
23892090 TT--A-ATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 TTAAATATATATTTTAATTATAATATATTTAATAATAATTATGTT
23892132 TAAATATGAT
Statistics
Matches: 155, Mismatches: 3, Indels: 12
0.91 0.02 0.07
Matches are distributed among these distances:
116 39 0.25
118 1 0.01
119 6 0.04
120 106 0.68
121 3 0.02
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (119 bp):
TTAAATATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTA
Found at i:23892003 original size:15 final size:15
Alignment explanation
Indices: 23891968--23892019 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
23891958 TTAAGAATTT
*
23891968 TATTAAATTAT-ATA
1 TATTTAATTATAATA
23891982 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
23891996 TATTTAATAATAAT-
1 TATTTAATTATAATA
23892010 TATGTTAATT
1 TAT-TTAATT
23892020 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:23892097 original size:57 final size:57
Alignment explanation
Indices: 23891916--23892099 Score: 162
Period size: 57 Copynumber: 3.1 Consensus size: 57
23891906 TTACAGTATC
23891916 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTA
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTA
* * * * * * *
23891973 A-AT-TATAT-ATTTTAATTATAATAT-ATTTAATAATAATTATGTTAATTTA-TATTTTACAGT
1 ATATAT-TATGA-TTTGAGTA-AAT-TCATATAAGAAT-ATTA-ATT-ATTAAGAATTTT--A-T
*
23892033 ATC
56 -TA
23892036 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTA
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTA
23892093 ATATATT
1 ATATATT
23892100 TTAATTATAA
Statistics
Matches: 95, Mismatches: 16, Indels: 32
0.66 0.11 0.22
Matches are distributed among these distances:
55 2 0.02
56 11 0.12
57 20 0.21
58 6 0.06
59 8 0.08
60 8 0.08
61 8 0.08
62 6 0.06
63 13 0.14
64 11 0.12
65 2 0.02
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (57 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTA
Found at i:23892119 original size:15 final size:16
Alignment explanation
Indices: 23892091--23892134 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
23892081 AGAATTTTAT
*
23892091 TAATATATTTTAATTA
1 TAATATATTTTAATAA
23892107 TAATATA-TTTAATAA
1 TAATATATTTTAATAA
23892122 TAAT-TATGTTTAA
1 TAATATAT-TTTAA
23892135 ATATGATTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
TAATATATTTTAATAA
Found at i:23892264 original size:18 final size:17
Alignment explanation
Indices: 23892236--23892270 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23892226 AATTATAAGA
*
23892236 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
23892253 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
23892271 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:23892362 original size:155 final size:153
Alignment explanation
Indices: 23892072--23892382 Score: 500
Period size: 155 Copynumber: 2.0 Consensus size: 153
23892062 ATAAGAATAT
*
23892072 TAATTATTAAGAATTTTATTAATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 TAATTATTAAGAATTTTATTAATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAAT
* * * * *
23892137 ATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATATCAATAAT
66 ATGATTAAATAAATTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATAAT
*
23892202 AATTTACCACAACAAATTTCTGC
131 AATTTACCAAAACAAATTTCTGC
23892225 TAATTA-TAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATT--A--ATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
23892289 AAATATGATTAAA-AAATTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
62 AAATATGATTAAATAAATTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
23892353 TAATCATTTACCAAAACAAATTTCTGC
127 TAATAATTTACCAAAACAAATTTCTGC
23892380 TAA
1 TAA
23892383 GGGTATTCTA
Statistics
Matches: 146, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
152 13 0.09
153 6 0.04
154 1 0.01
155 74 0.51
156 52 0.36
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.43
Consensus pattern (153 bp):
TAATTATTAAGAATTTTATTAATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAAAT
ATGATTAAATAAATTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAATAAT
AATTTACCAAAACAAATTTCTGC
Found at i:23892526 original size:16 final size:16
Alignment explanation
Indices: 23892505--23892572 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
23892495 GATTTGCTAT
* *
23892505 TACACCTTTAATCTAA
1 TACACCTCTAATCCAA
*
23892521 TACACCTCTAATCTAA
1 TACACCTCTAATCCAA
23892537 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
23892553 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
23892569 TACA
1 TACA
23892573 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.38, C:0.32, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:23893265 original size:23 final size:25
Alignment explanation
Indices: 23893220--23893277 Score: 75
Period size: 23 Copynumber: 2.4 Consensus size: 25
23893210 TATTATGGAT
*
23893220 TAATATAAAAAAATAATACATTATAA
1 TAATAT-AAATAATAATACATTATAA
*
23893246 -AAT-TAAATAATAATATATTATAA
1 TAATATAAATAATAATACATTATAA
23893269 TAATATAAA
1 TAATATAAA
23893278 AACTGAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
23 17 0.61
24 4 0.14
25 7 0.25
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (25 bp):
TAATATAAATAATAATACATTATAA
Found at i:23893268 original size:13 final size:13
Alignment explanation
Indices: 23893231--23893275 Score: 51
Period size: 13 Copynumber: 3.7 Consensus size: 13
23893221 AATATAAAAA
*
23893231 AATAATACATTAT
1 AATAATATATTAT
*
23893244 AA-AAT-TA-AAT
1 AATAATATATTAT
23893254 AATAATATATTAT
1 AATAATATATTAT
23893267 AATAATATA
1 AATAATATA
23893276 AAAACTGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
10 4 0.15
11 4 0.15
12 5 0.19
13 13 0.50
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (13 bp):
AATAATATATTAT
Found at i:23893392 original size:16 final size:16
Alignment explanation
Indices: 23893371--23893406 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
23893361 TTTGGTTCGC
23893371 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
23893387 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
23893403 TGTA
1 TGTA
23893407 ATAGCTAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:23893471 original size:44 final size:45
Alignment explanation
Indices: 23893387--23893477 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
23893377 GGATTAGAGG
* * *
23893387 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
23893432 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
23893476 TG
1 TG
23893478 AAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:23893494 original size:39 final size:42
Alignment explanation
Indices: 23893397--23893500 Score: 115
Period size: 44 Copynumber: 2.5 Consensus size: 42
23893387 TGTATTGGAT
23893397 TAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAATGTAATGGAA
1 TAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAATG-AA--GAA
* ***
23893442 TAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAATG-A-AA
1 TAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAATGAAGAA
23893481 TAGAGGTGTAATAGCATAAT
1 TAGAGGTGTAATAGC-TAAT
23893501 GGAAAAAACT
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
39 15 0.29
41 4 0.08
42 1 0.02
44 19 0.37
45 13 0.25
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.34
Consensus pattern (42 bp):
TAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAATGAAGAA
Found at i:23893663 original size:18 final size:17
Alignment explanation
Indices: 23893642--23893676 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23893632 TTATTATTAA
*
23893642 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
23893660 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
23893677 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:23893813 original size:156 final size:157
Alignment explanation
Indices: 23893529--23893844 Score: 580
Period size: 156 Copynumber: 2.0 Consensus size: 157
23893519 TAGAATACCC
23893529 TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
*
23893594 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
23893659 TATATAATTTAATAAAATTCTT-ATAA
131 TATATAATTTAATAAAATTCTTAATAA
*
23893685 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
* *
23893750 TTATCAGTAATAAATAATTTAATCATATTTAAACATAATTTTTATTAACTATATTTTAATTAAAA
66 TTATCAGTAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
*
23893815 TATATAATTTAATAAATTTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
23893842 TTA
1 TTA
23893845 ATATTCTTAT
Statistics
Matches: 154, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
156 147 0.95
157 7 0.05
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.49
Consensus pattern (157 bp):
TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
TTATCAGTAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:23893927 original size:120 final size:119
Alignment explanation
Indices: 23893781--23894004 Score: 376
Period size: 120 Copynumber: 1.9 Consensus size: 119
23893771 ATCATATTTA
* * * *
23893781 AACATAATTTTTATTAACTATATTTTAATTAAAATATATAATTTAATAAATTTCTTAATAATTAA
1 AACATAAATATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
23893846 TATTCTTATATTAATTTACTCAAATCATAATATCTGATACTGTAAAATATAAATT
66 TATTCTTATA-TAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
*
23893901 AACATAAATATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTCA
1 AACATAAATATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
23893966 TATTCTTATATAATTTATTCAAATCATAATATATGATAC
66 TATTCTTATATAATTTACTCAAATCATAATATATGATAC
23894005 CATAATTAAT
Statistics
Matches: 97, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
119 27 0.28
120 70 0.72
ACGTcount: A:0.46, C:0.07, G:0.01, T:0.45
Consensus pattern (119 bp):
AACATAAATATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:23893939 original size:18 final size:17
Alignment explanation
Indices: 23893918--23893952 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23893908 ATATTATTAA
*
23893918 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
23893936 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
23893953 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:23894072 original size:26 final size:24
Alignment explanation
Indices: 23894031--23894082 Score: 68
Period size: 26 Copynumber: 2.1 Consensus size: 24
23894021 AATATTTTAA
23894031 TTAAAATATATGATTAAATACAAT
1 TTAAAATATATGATTAAATACAAT
* *
23894055 TTAAAATCATTATTATTAAATATAAT
1 TTAAAAT-A-TATGATTAAATACAAT
23894081 TT
1 TT
23894083 CATAAAATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 7 0.29
25 1 0.04
26 16 0.67
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (24 bp):
TTAAAATATATGATTAAATACAAT
Found at i:23900218 original size:3 final size:3
Alignment explanation
Indices: 23900210--23900268 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
23900200 CAAGCCCTAA
23900210 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
23900258 TAC TAC TAC TA
1 TAC TAC TAC TA
23900269 ATAATAATAA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (3 bp):
TAC
Found at i:23910546 original size:15 final size:16
Alignment explanation
Indices: 23910516--23910549 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
23910506 AGACTTCAAT
23910516 TTTAAATTTGTGTTAA
1 TTTAAATTTGTGTTAA
23910532 TTTAAATTT-TGTTAA
1 TTTAAATTTGTGTTAA
23910547 TTT
1 TTT
23910550 TTTTATTATC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62
Consensus pattern (16 bp):
TTTAAATTTGTGTTAA
Found at i:23919641 original size:14 final size:14
Alignment explanation
Indices: 23919617--23919658 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
23919607 AATCAAAGTC
* *
23919617 AAAACAAAAAATGA
1 AAAAGAAAAAAGGA
*
23919631 AAATGAAAAAAGGA
1 AAAAGAAAAAAGGA
23919645 AAAAGAAAAAAGGA
1 AAAAGAAAAAAGGA
23919659 GAGGCCAAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.76, C:0.02, G:0.17, T:0.05
Consensus pattern (14 bp):
AAAAGAAAAAAGGA
Found at i:23920544 original size:6 final size:7
Alignment explanation
Indices: 23920524--23920574 Score: 70
Period size: 7 Copynumber: 7.3 Consensus size: 7
23920514 CAGAAAAATG
23920524 TGAAAAA
1 TGAAAAA
23920531 TGAAAAAA
1 TG-AAAAA
23920539 TG-AAAA
1 TGAAAAA
23920545 TGAAAAA
1 TGAAAAA
23920552 TGAAAAA
1 TGAAAAA
23920559 TGAAAAA
1 TGAAAAA
23920566 -GTAAAAA
1 TG-AAAAA
23920573 TG
1 TG
23920575 GAGAGGCCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
6 7 0.17
7 25 0.62
8 8 0.20
ACGTcount: A:0.69, C:0.00, G:0.16, T:0.16
Consensus pattern (7 bp):
TGAAAAA
Found at i:23921988 original size:44 final size:44
Alignment explanation
Indices: 23921885--23921995 Score: 159
Period size: 44 Copynumber: 2.5 Consensus size: 44
23921875 TATTGGTGGC
* * *
23921885 GAAGTAGATCGAAGAAAACAGATCTTGCCTTTATGTACTAGCAT
1 GAAGTAGATCGAAGATAGCAGATCTTGCCTTCATGTACTAGCAT
* * *
23921929 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTACTGGCAT
1 GAAGTAGATCGAAGATAGCAGATCTTGCCTTCATGTACTAGCAT
*
23921973 GAAGTAGATCGAAGATGGCAGAT
1 GAAGTAGATCGAAGATAGCAGAT
23921996 TTTACCTCCC
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 60 1.00
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.26
Consensus pattern (44 bp):
GAAGTAGATCGAAGATAGCAGATCTTGCCTTCATGTACTAGCAT
Found at i:23922308 original size:50 final size:50
Alignment explanation
Indices: 23922199--23922493 Score: 302
Period size: 50 Copynumber: 5.9 Consensus size: 50
23922189 ACAGCGGAGT
* * * * * * * *
23922199 AGATTAAAGCCACAACGGTGAATCTTGCTTCTCTAAAATTACAGTTAAAA
1 AGATTAAAGCCACGACGGCGAATCTTACTTCCCTGACATTGCAGTGAAAA
* * * ** * *
23922249 AGACTAAAGCCACGACGGCGAGTCTTACTTCCCTGGCGGTGCAGTGGAAC
1 AGATTAAAGCCACGACGGCGAATCTTACTTCCCTGACATTGCAGTGAAAA
* * * *
23922299 AGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACGACGGCGAATCTTACTTCCCTGACATTGCAGTGAAAA
* * * * * *
23922349 AGATTAAAGCCACGACGACAAATCTTACTTCCCTGGCATTGCATTGGAAT
1 AGATTAAAGCCACGACGGCGAATCTTACTTCCCTGACATTGCAGTGAAAA
* * * * * *
23922399 AGATTAAAGCCACAACGGCGACTCTTGCTTCCCCGACATTGTAGTTAAAA
1 AGATTAAAGCCACGACGGCGAATCTTACTTCCCTGACATTGCAGTGAAAA
*
23922449 AGATTAAAGCCACGACGACGAATCTTACTTCCCTGACATTGCAGT
1 AGATTAAAGCCACGACGGCGAATCTTACTTCCCTGACATTGCAGT
23922494 CAGATAGAAG
Statistics
Matches: 191, Mismatches: 54, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
50 191 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (50 bp):
AGATTAAAGCCACGACGGCGAATCTTACTTCCCTGACATTGCAGTGAAAA
Found at i:23922501 original size:100 final size:100
Alignment explanation
Indices: 23922198--23922493 Score: 439
Period size: 100 Copynumber: 3.0 Consensus size: 100
23922188 TACAGCGGAG
* * ** * * *
23922198 TAGATTAAAGCCACAACGGTGAATCTTGCTTCTCTAAAATTACAGTTAAAAAGACTAAAGCCACG
1 TAGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCCACG
* * **
23922263 ACGGCGAGTCTTACTTCCCTGGCGGTGCAGTGGAA
66 ACGACGAATCTTACTTCCCTGGCATTGCAGTGGAA
*
23922298 CAGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCCACG
1 TAGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCCACG
* *
23922363 ACGACAAATCTTACTTCCCTGGCATTGCATTGGAA
66 ACGACGAATCTTACTTCCCTGGCATTGCAGTGGAA
* *
23922398 TAGATTAAAGCCACAACGGCGACTCTTGCTTCCCCGACATTGTAGTTAAAAAGATTAAAGCCACG
1 TAGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCCACG
*
23922463 ACGACGAATCTTACTTCCCTGACATTGCAGT
66 ACGACGAATCTTACTTCCCTGGCATTGCAGT
23922494 CAGATAGAAG
Statistics
Matches: 176, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
100 176 1.00
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (100 bp):
TAGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCCACG
ACGACGAATCTTACTTCCCTGGCATTGCAGTGGAA
Found at i:23923056 original size:16 final size:16
Alignment explanation
Indices: 23923035--23923071 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
23923025 AACCCAATAT
23923035 CCCAATCATAACTCAG
1 CCCAATCATAACTCAG
23923051 CCCAATCATAACTCAG
1 CCCAATCATAACTCAG
23923067 CCCAA
1 CCCAA
23923072 ATGACCTAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.38, C:0.41, G:0.05, T:0.16
Consensus pattern (16 bp):
CCCAATCATAACTCAG
Found at i:23923272 original size:11 final size:11
Alignment explanation
Indices: 23923258--23923282 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
23923248 GGGATTTCAT
23923258 TTTTATTTTTC
1 TTTTATTTTTC
23923269 TTTTATTTTTC
1 TTTTATTTTTC
23923280 TTT
1 TTT
23923283 GTTCGGCTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTATTTTTC
Found at i:23926150 original size:4 final size:4
Alignment explanation
Indices: 23926141--23926194 Score: 108
Period size: 4 Copynumber: 13.5 Consensus size: 4
23926131 TTTAAGCCTC
23926141 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
23926189 ATGT AT
1 ATGT AT
23926195 CCAAGTCCCA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 50 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:23934914 original size:42 final size:42
Alignment explanation
Indices: 23934868--23935262 Score: 479
Period size: 42 Copynumber: 9.4 Consensus size: 42
23934858 AAAAACAATA
* **
23934868 GAGGTCCATTTACCTTTCATAACATTTAGAGACCCAGGTGTG
1 GAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGGTGTG
**
23934910 GAGGTCTGTTTACTTTTCATTGCATTTAGAGACCCAGGTGTG
1 GAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGGTGTG
* *
23934952 GAGGTTCATTTAC-TTTAATTGCATTTAGAGACCCAGGTGTG
1 GAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGGTGTG
*** * *
23934993 GAGGTTTGTTCACTTTTCATTGCATTTAGAGATCCAGGTGTG
1 GAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGGTGTG
* *
23935035 GAGGTCCATTTACTTTTCATTGCATTTAGAGGCCTAGGTGTG
1 GAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGGTGTG
* * * * *
23935077 GAGGTACATTTACTTTTCATTGCATTTAGAGGCCTAGGTATA
1 GAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGGTGTG
* * *
23935119 GAGGTCCATTTACTTTTCATTGCATTTAGAGACCTAGATGTA
1 GAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGGTGTG
* * * *
23935161 GAGGTCTATTCACTTTTCATTCCATTTAGAGGCCCAGGTGTG
1 GAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGGTGTG
* * * *
23935203 GAGGCCCATTGACTTTTCATTGGATTTAGA-AGCCTAGGTGTG
1 GAGGTCCATTTACTTTTCATTGCATTTAGAGA-CCCAGGTGTG
* *
23935245 GAGGTCCGTCTACTTTTC
1 GAGGTCCATTTACTTTTC
23935263 TAGTTTAGAG
Statistics
Matches: 305, Mismatches: 46, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
41 37 0.12
42 268 0.88
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.37
Consensus pattern (42 bp):
GAGGTCCATTTACTTTTCATTGCATTTAGAGACCCAGGTGTG
Found at i:23937389 original size:16 final size:15
Alignment explanation
Indices: 23937365--23937398 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
23937355 ATTTGAGACC
*
23937365 TTTTTTTCTTTTCTT
1 TTTTTTTCTTTCCTT
23937380 TTTTTCTTCTTTCCTT
1 TTTTT-TTCTTTCCTT
23937396 TTT
1 TTT
23937399 GACAGTCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTTTCTTTCCTT
Found at i:23941128 original size:150 final size:146
Alignment explanation
Indices: 23940942--23941251 Score: 383
Period size: 150 Copynumber: 2.1 Consensus size: 146
23940932 AAGTTTTGAT
* * * * *
23940942 TTTTTTTTAAAAAAAAAAGTTTAGATTTTAACAAATAAAAATATGTTTTTTTAGTTATTTTAAAG
1 TTTTTTTAAAAAAAAAAAGTTTAGATTTTAACAAATAAAAATATATTTTTTAAGTCATTTTAAAA
* *
23941007 GAAAGTAGAAATTTTTAGAACAAAATTTTAATTTTTTTCAACTATTT-TAAAGTAAAATCTTTAA
66 GAAAGTAGAAATTTTTAAAACAAAATTTTAATTTTTTT-AACTATTTCGAAA-TAAAAT-TTTAA
23941071 TCTTTAAGAAAAAT-AGTA
128 TCTTTAAGAAAAATAAGTA
23941089 TTTTTTTAAAAAAAGCAGAAAGTTTAGATTTTGAA-AAATAAAAATATATTTTTTAAGTCATTTT
1 TTTTTTTAAAAAAA--A-AAAGTTTAGATTTT-AACAAATAAAAATATATTTTTTAAGTCATTTT
** * * ** *
23941153 AAAAGAAAGTTTACATTTTTAAAACAAAATTTTGATTTTTTTAACTATTTCGAAATAAGGTTTTG
62 AAAAGAAAGTAGAAATTTTTAAAACAAAATTTTAATTTTTTTAACTATTTCGAAATAAAATTTTA
* * *
23941218 ATTTTTAAGAAAATTAATTA
127 ATCTTTAAGAAAAATAAGTA
23941238 TTTTTTTAAAAAAA
1 TTTTTTTAAAAAAA
23941252 CTTTGATTTT
Statistics
Matches: 140, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
147 13 0.09
148 16 0.11
149 30 0.21
150 79 0.56
151 2 0.01
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.44
Consensus pattern (146 bp):
TTTTTTTAAAAAAAAAAAGTTTAGATTTTAACAAATAAAAATATATTTTTTAAGTCATTTTAAAA
GAAAGTAGAAATTTTTAAAACAAAATTTTAATTTTTTTAACTATTTCGAAATAAAATTTTAATCT
TTAAGAAAAATAAGTA
Found at i:23944919 original size:14 final size:14
Alignment explanation
Indices: 23944900--23944934 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
23944890 CTTAATTAAA
23944900 TTTTTTATTTCTAT
1 TTTTTTATTTCTAT
*
23944914 TTTTTTATTTTTAT
1 TTTTTTATTTCTAT
23944928 TTATTTT
1 TT-TTTT
23944935 TTTAGAGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 15 0.79
15 4 0.21
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTTTATTTCTAT
Found at i:23944926 original size:20 final size:18
Alignment explanation
Indices: 23944901--23944938 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 18
23944891 TTAATTAAAT
23944901 TTTTTATTTCTATTTTTTTA
1 TTTTTA-TT-TATTTTTTTA
23944921 TTTTTATTTATTTTTTTA
1 TTTTTATTTATTTTTTTA
23944939 GAGTAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.56
19 2 0.11
20 6 0.33
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTTTATTTATTTTTTTA
Found at i:23947499 original size:6 final size:6
Alignment explanation
Indices: 23947488--23947539 Score: 97
Period size: 6 Copynumber: 8.8 Consensus size: 6
23947478 ATCTAAAAAT
23947488 CTAATA CTAATA CTAATA CTAATA CTAATA CTAATA CTAATA CTAAT-
1 CTAATA CTAATA CTAATA CTAATA CTAATA CTAATA CTAATA CTAATA
23947535 CTAAT
1 CTAAT
23947540 GCAGAAATTA
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
5 5 0.11
6 41 0.89
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (6 bp):
CTAATA
Found at i:23947586 original size:8 final size:8
Alignment explanation
Indices: 23947575--23947606 Score: 55
Period size: 8 Copynumber: 3.9 Consensus size: 8
23947565 AACAAGTAGA
23947575 ATAATAAT
1 ATAATAAT
23947583 ATAAATAAT
1 AT-AATAAT
23947592 ATAATAAT
1 ATAATAAT
23947600 ATAATAA
1 ATAATAA
23947607 AATACACAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 15 0.65
9 8 0.35
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (8 bp):
ATAATAAT
Found at i:23964023 original size:32 final size:32
Alignment explanation
Indices: 23963982--23964046 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
23963972 TATACAAGCT
*
23963982 AAACATAATGGCTAATTGCATTAAACAAAGAC
1 AAACATAATGGCTAATTGCATCAAACAAAGAC
23964014 AAACATAATGGCTAATTGCATCAAACAAAGAC
1 AAACATAATGGCTAATTGCATCAAACAAAGAC
23964046 A
1 A
23964047 CCTATACATG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.51, C:0.17, G:0.12, T:0.20
Consensus pattern (32 bp):
AAACATAATGGCTAATTGCATCAAACAAAGAC
Found at i:23971778 original size:65 final size:66
Alignment explanation
Indices: 23971702--23971835 Score: 234
Period size: 66 Copynumber: 2.0 Consensus size: 66
23971692 TCATAATTGG
* *
23971702 AATGTTAACATGGTA-TTTTATTTGCATCATGATAATTTTAGCTCTTAATTTTTGCACATTGCAT
1 AATGTCAACATGGTATTTTTATTTGCATCATGATAATTTTAACTCTTAATTTTTGCACATTGCAT
23971766 C
66 C
*
23971767 AATGTCAACATGGTATTTTTATTTGCATCATGATAATTTTAATTCTTAATTTTTGCACATTGCAT
1 AATGTCAACATGGTATTTTTATTTGCATCATGATAATTTTAACTCTTAATTTTTGCACATTGCAT
23971832 C
66 C
23971833 AAT
1 AAT
23971836 TTAATTTTTA
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
65 14 0.22
66 51 0.78
ACGTcount: A:0.29, C:0.13, G:0.11, T:0.46
Consensus pattern (66 bp):
AATGTCAACATGGTATTTTTATTTGCATCATGATAATTTTAACTCTTAATTTTTGCACATTGCAT
C
Found at i:23973990 original size:19 final size:20
Alignment explanation
Indices: 23973952--23973991 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
23973942 TTCTCTTATA
* *
23973952 TAAAATGTATTTTAATATTT
1 TAAAATGTATTTGAAAATTT
23973972 TAAAAT-TATTTGAAAATTT
1 TAAAATGTATTTGAAAATTT
23973991 T
1 T
23973992 GCTAGATTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (20 bp):
TAAAATGTATTTGAAAATTT
Found at i:23975776 original size:47 final size:47
Alignment explanation
Indices: 23975721--23975850 Score: 188
Period size: 47 Copynumber: 2.8 Consensus size: 47
23975711 CAAAGTTGCT
* ***
23975721 AATATGTTGTGGATGAACCACTAGTCGAGCAGATGACTGTTGACTAA
1 AATATGTTGTGGATAAACCACTAGTCGAGCAGATGACTGCCAACTAA
* *
23975768 AATATGTTGTGGATAAACCACTGGTCGAGCAGATGACTGCCAACTAG
1 AATATGTTGTGGATAAACCACTAGTCGAGCAGATGACTGCCAACTAA
* *
23975815 AATACGTTGTGGATAAACCACTAGTCGAGTAGATGA
1 AATATGTTGTGGATAAACCACTAGTCGAGCAGATGA
23975851 ATTACCGACT
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 74 1.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.25
Consensus pattern (47 bp):
AATATGTTGTGGATAAACCACTAGTCGAGCAGATGACTGCCAACTAA
Found at i:23976511 original size:31 final size:31
Alignment explanation
Indices: 23976446--23976517 Score: 83
Period size: 32 Copynumber: 2.3 Consensus size: 31
23976436 TCATTTTAAA
*
23976446 ATATTGATTCTAAATATAAAAAAAAATATTT
1 ATATTGATTCTAAATATAAAAAAAAATATAT
*
23976477 ATATTGATTTCTAAA-ATAAATAAAATATCATAT
1 ATATTGA-TTCTAAATATAAA-AAAAAAT-ATAT
*
23976510 ATAATGAT
1 ATATTGAT
23976518 AGAGAAAGAT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
31 12 0.34
32 14 0.40
33 9 0.26
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.39
Consensus pattern (31 bp):
ATATTGATTCTAAATATAAAAAAAAATATAT
Found at i:23980069 original size:12 final size:12
Alignment explanation
Indices: 23980052--23980081 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
23980042 TGTAGCTAAT
23980052 ATGTGAACCTTC
1 ATGTGAACCTTC
*
23980064 ATGTGAACCTTT
1 ATGTGAACCTTC
23980076 ATGTGA
1 ATGTGA
23980082 TTTAGTACGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37
Consensus pattern (12 bp):
ATGTGAACCTTC
Found at i:23980124 original size:13 final size:13
Alignment explanation
Indices: 23980108--23980174 Score: 98
Period size: 13 Copynumber: 5.2 Consensus size: 13
23980098 TATATACAAG
23980108 CCCTATATGTGAA
1 CCCTATATGTGAA
23980121 CCCTATATGTGAA
1 CCCTATATGTGAA
** *
23980134 CTATATATGCGAA
1 CCCTATATGTGAA
23980147 CCCTATATGTGAA
1 CCCTATATGTGAA
*
23980160 CCCTATATGCGAA
1 CCCTATATGTGAA
23980173 CC
1 CC
23980175 TGTTATGTAT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 47 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (13 bp):
CCCTATATGTGAA
Found at i:23994096 original size:15 final size:17
Alignment explanation
Indices: 23994069--23994103 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
23994059 TTTCATTTTC
23994069 ATTTTATTTCACT-ATT
1 ATTTTATTTCACTCATT
23994085 ATTTTA-TTCACTCATT
1 ATTTTATTTCACTCATT
23994101 ATT
1 ATT
23994104 ATAACTAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.26, C:0.14, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTTCACTCATT
Found at i:23994902 original size:43 final size:43
Alignment explanation
Indices: 23994851--23995010 Score: 205
Period size: 43 Copynumber: 3.7 Consensus size: 43
23994841 CTGGCACGTA
* *
23994851 AGTGCATCATTGGATAAACCGAAGAAAATATATTGGCACACAT
1 AGTGCATCATCGGATAAACCGAAGAAAATATATTGGCACACAC
* *
23994894 AGTGCATCATCGGAGAAACTGAAGAAAATATATTGGCACACAC
1 AGTGCATCATCGGATAAACCGAAGAAAATATATTGGCACACAC
* * * * *
23994937 AATGCATCATCGGATGAAACTGAAGATACTATACTGGCACACAC
1 AGTGCATCATCGGAT-AAACCGAAGAAAATATATTGGCACACAC
*
23994981 AGTGCATCA-CTGGATAAACCAAAGAAAATA
1 AGTGCATCATC-GGATAAACCGAAGAAAATA
23995011 AGATATACCG
Statistics
Matches: 101, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
43 64 0.63
44 37 0.37
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.20
Consensus pattern (43 bp):
AGTGCATCATCGGATAAACCGAAGAAAATATATTGGCACACAC
Found at i:23995044 original size:26 final size:24
Alignment explanation
Indices: 23995015--23995068 Score: 72
Period size: 26 Copynumber: 2.2 Consensus size: 24
23995005 AAAATAAGAT
*
23995015 ATACCGAAGCAAATATACTAGCACAC
1 ATACCAAAGCAAATATACTA--ACAC
*
23995041 ATACCAAAGGAAATATACTAACAC
1 ATACCAAAGCAAATATACTAACAC
23995065 ATAC
1 ATAC
23995069 AGTGCATCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 8 0.31
26 18 0.69
ACGTcount: A:0.50, C:0.24, G:0.09, T:0.17
Consensus pattern (24 bp):
ATACCAAAGCAAATATACTAACAC
Found at i:23998592 original size:38 final size:37
Alignment explanation
Indices: 23998537--23998614 Score: 120
Period size: 38 Copynumber: 2.1 Consensus size: 37
23998527 GTTAACTTTC
* *
23998537 AATACACCGGCACAAAGCCTGCTAGGCACAGAGTCCG
1 AATACACCGGCACAAAGCCTACTAGGCACAGAGCCCG
*
23998574 AATATCACCGGCATAAAGCCTACTAGGCACAGAGCCCG
1 AATA-CACCGGCACAAAGCCTACTAGGCACAGAGCCCG
23998612 AAT
1 AAT
23998615 GACATTACGT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
37 4 0.11
38 33 0.89
ACGTcount: A:0.35, C:0.31, G:0.22, T:0.13
Consensus pattern (37 bp):
AATACACCGGCACAAAGCCTACTAGGCACAGAGCCCG
Done.