Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 62769430
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 1067035 characters in sequence are not A, C, G, or T
File 90 of 206
Found at i:25983562 original size:102 final size:101
Alignment explanation
Indices: 25983386--25983609 Score: 403
Period size: 102 Copynumber: 2.2 Consensus size: 101
25983376 NNNNNNNNNN
25983386 TAACTTACAACTTACATAATACATTTAACTTACAACTTACATAATACATAATAACTTACAACTTA
1 TAACTTACAACTTACATAATACATTTAACTTACAACTTACATAATACATAATAACTTACAACTTA
*
25983451 CATTATACACTTAACTTACAACTTACATTATAACACT
66 CATTATACACTTAACTTACAACTTACATAAT-ACACT
25983488 TAACTTACAACTTACATAATACATTTAACTTACAACTTACATAATACATAATAACTTACAACTTA
1 TAACTTACAACTTACATAATACATTTAACTTACAACTTACATAATACATAATAACTTACAACTTA
*
25983553 CATTATACACTTAACTTACAACTTACATAATACATT
66 CATTATACACTTAACTTACAACTTACATAATACACT
25983589 TAACTTACATAACTTACATAA
1 TAACTTAC--AACTTACATAA
25983610 CTTACATAAT
Statistics
Matches: 118, Mismatches: 2, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
101 12 0.10
102 95 0.81
103 11 0.09
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.34
Consensus pattern (101 bp):
TAACTTACAACTTACATAATACATTTAACTTACAACTTACATAATACATAATAACTTACAACTTA
CATTATACACTTAACTTACAACTTACATAATACACT
Found at i:25983644 original size:37 final size:36
Alignment explanation
Indices: 25983572--25983654 Score: 112
Period size: 37 Copynumber: 2.3 Consensus size: 36
25983562 CTTAACTTAC
* *
25983572 AACTTACATAATACATTTAACTTACATAACTTACAT
1 AACTTACATAATACATATAACTTACATAACATACAT
*
25983608 AACTTACATAATACATAATAACTTACATTACATACAT
1 AACTTACATAATACAT-ATAACTTACATAACATACAT
* *
25983645 TACTTTCATA
1 AACTTACATA
25983655 GATTTAGATT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
36 16 0.39
37 25 0.61
ACGTcount: A:0.45, C:0.19, G:0.00, T:0.36
Consensus pattern (36 bp):
AACTTACATAATACATATAACTTACATAACATACAT
Found at i:25985819 original size:21 final size:21
Alignment explanation
Indices: 25985793--25985863 Score: 81
Period size: 21 Copynumber: 3.4 Consensus size: 21
25985783 CTACAACTTA
25985793 AAGCAGAGGCGGAAGCGAGGG
1 AAGCAGAGGCGGAAGCGAGGG
* *
25985814 AAGCAGCGGCGGCAGCGAGGG
1 AAGCAGAGGCGGAAGCGAGGG
* * *
25985835 AAGCGGAGGC-TACAGCGAGAG
1 AAGCAGAGGCGGA-AGCGAGGG
25985856 AAGCAGAG
1 AAGCAGAG
25985864 CAGAGCAAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.32, C:0.18, G:0.48, T:0.01
Consensus pattern (21 bp):
AAGCAGAGGCGGAAGCGAGGG
Found at i:25986268 original size:85 final size:85
Alignment explanation
Indices: 25986170--25986329 Score: 250
Period size: 85 Copynumber: 1.9 Consensus size: 85
25986160 TTTTTTGTAT
* **
25986170 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGC-ATTTGTAAAAAAACGCCGCTACCGAACATG
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCGATTAGT-AAAAAACGCCGCTAAAGAACATG
*
25986234 TTCTTTAGCGGCATTTGTAAA
65 ATCTTTAGCGGCATTTGTAAA
* *
25986255 AAAAACGCCACTAAAGACCATGTTCTTTAGCGGCGCTTAGTAAAAAACGCCGCTAAAGAACATGA
1 AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCGATTAGTAAAAAACGCCGCTAAAGAACATGA
25986320 TCTTTAGCGG
66 TCTTTAGCGG
25986330 TGTTTTTGTT
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
85 64 0.94
86 4 0.06
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.24
Consensus pattern (85 bp):
AAAAACGCCACTAAAGAACATGTTCTTTAGCGGCGATTAGTAAAAAACGCCGCTAAAGAACATGA
TCTTTAGCGGCATTTGTAAA
Found at i:25986277 original size:43 final size:42
Alignment explanation
Indices: 25986163--25986329 Score: 228
Period size: 42 Copynumber: 4.0 Consensus size: 42
25986153 GTGGCGTTTT
*
25986163 TTTGTATAAAAACGCCACTAAAGAACATGTTCTTTAGCGGCA
1 TTTGTAAAAAAACGCCACTAAAGAACATGTTCTTTAGCGGCA
* **
25986205 TTTGTAAAAAAACGCCGCTACCGAACATGTTCTTTAGCGGCA
1 TTTGTAAAAAAACGCCACTAAAGAACATGTTCTTTAGCGGCA
* *
25986247 TTTGTAAAAAAAACGCCACTAAAGACCATGTTCTTTAGCGGCGC
1 TTTGT-AAAAAAACGCCACTAAAGAACATGTTCTTTAGCGGC-A
* * *
25986291 TTAGT-AAAAAACGCCGCTAAAGAACATGATCTTTAGCGG
1 TTTGTAAAAAAACGCCACTAAAGAACATGTTCTTTAGCGG
25986330 TGTTTTTGTT
Statistics
Matches: 110, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
42 74 0.67
43 32 0.29
44 4 0.04
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.26
Consensus pattern (42 bp):
TTTGTAAAAAAACGCCACTAAAGAACATGTTCTTTAGCGGCA
Found at i:25986836 original size:25 final size:25
Alignment explanation
Indices: 25986808--25986870 Score: 108
Period size: 25 Copynumber: 2.5 Consensus size: 25
25986798 TTAAACTAAG
*
25986808 CAGAATACAGATTTAACATACAATC
1 CAGAATACAGATTGAACATACAATC
*
25986833 CAGAATACAAATTGAACATACAATC
1 CAGAATACAGATTGAACATACAATC
25986858 CAGAATACAGATT
1 CAGAATACAGATT
25986871 CCAAAATTCC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.49, C:0.19, G:0.10, T:0.22
Consensus pattern (25 bp):
CAGAATACAGATTGAACATACAATC
Found at i:25991083 original size:35 final size:35
Alignment explanation
Indices: 25991022--25991151 Score: 138
Period size: 35 Copynumber: 3.7 Consensus size: 35
25991012 GTACTAAAAA
* *
25991022 GGTA-TGTGTATATATACAATATATATATATGTGTG
1 GGTATTGT-TATATATATAATATATATATATGTATG
* * *
25991057 GGTTTTGTTATATATATAATACATATATGTGTATG
1 GGTATTGTTATATATATAATATATATATATGTATG
* * ** *
25991092 GGTCTTGAT-TATATATAATATATATGCATATATG
1 GGTATTGTTATATATATAATATATATATATGTATG
*
25991126 GGTATTGTTTTATATATAATATATAT
1 GGTATTGTTATATATATAATATATAT
25991152 GTATATGGGT
Statistics
Matches: 79, Mismatches: 14, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
34 27 0.34
35 49 0.62
36 3 0.04
ACGTcount: A:0.34, C:0.03, G:0.16, T:0.47
Consensus pattern (35 bp):
GGTATTGTTATATATATAATATATATATATGTATG
Found at i:25991106 original size:69 final size:67
Alignment explanation
Indices: 25991032--25991161 Score: 170
Period size: 69 Copynumber: 1.9 Consensus size: 67
25991022 GGTATGTGTA
* * * * *
25991032 TATATACAATATATATATATGTGTGGGTTTTGTTATATATATAATACATATATGTGTATGGGTCT
1 TATATACAATATATATACATATATGGGTATTGTTATATATATAAT--ATATATGTATATGGGTCT
25991097 TGAT
64 TGAT
* * *
25991101 TATATATAATATATATGCATATATGGGTATTGTTTTATATATAATATATATGTATATGGGT
1 TATATACAATATATATACATATATGGGTATTGTTATATATATAATATATATGTATATGGGT
25991162 TTTGTAATGT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
67 15 0.28
69 38 0.72
ACGTcount: A:0.34, C:0.03, G:0.16, T:0.47
Consensus pattern (67 bp):
TATATACAATATATATACATATATGGGTATTGTTATATATATAATATATATGTATATGGGTCTTG
AT
Found at i:25991152 original size:35 final size:33
Alignment explanation
Indices: 25991032--25991166 Score: 137
Period size: 35 Copynumber: 3.9 Consensus size: 33
25991022 GGTATGTGTA
* * * *
25991032 TATATACAATATATATATATGTGTGGGTTTTGTTA
1 TATATATAATATATATGTA--TATGGGTTTTGTTT
* * *
25991067 TATATATAATACATATATGTGTATGGGTCTTG-AT
1 TATATATAAT--ATATATGTATATGGGTTTTGTTT
*
25991101 TATATATAATATATATGCATATATGGGTATTGTTT
1 TATATATAATATATATG--TATATGGGTTTTGTTT
25991136 TATATATAATATATATGTATATGGGTTTTGT
1 TATATATAATATATATGTATATGGGTTTTGT
25991167 AATGTTTGCG
Statistics
Matches: 84, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
32 7 0.08
33 13 0.15
34 21 0.25
35 36 0.43
37 7 0.08
ACGTcount: A:0.33, C:0.03, G:0.16, T:0.48
Consensus pattern (33 bp):
TATATATAATATATATGTATATGGGTTTTGTTT
Found at i:26008520 original size:28 final size:27
Alignment explanation
Indices: 26008468--26008580 Score: 85
Period size: 27 Copynumber: 4.2 Consensus size: 27
26008458 CATATATCAC
*
26008468 TAAGCA-CAAAGTGTAAAT-A--ACGA
1 TAAGCACCAAAGTGCAAATAATTACGA
*
26008491 TAAGTACCAAAGTGCAAAATAATTACGA
1 TAAGCACCAAAGTGC-AAATAATTACGA
**
26008519 TAA-CAGCCAAAGTGCAAATTTTTACAATGA
1 TAAGCA-CCAAAGTGCAAATAATTAC---GA
*
26008549 TAAGCACCGAAGTGCGAAATAA-TACGA
1 TAAGCACCAAAGTGC-AAATAATTACGA
26008576 TAAGC
1 TAAGC
26008581 GCGTTAATTT
Statistics
Matches: 71, Mismatches: 8, Indels: 18
0.73 0.08 0.19
Matches are distributed among these distances:
23 5 0.07
24 7 0.10
25 4 0.06
26 1 0.01
27 16 0.23
28 16 0.23
30 16 0.23
31 6 0.08
ACGTcount: A:0.47, C:0.16, G:0.17, T:0.20
Consensus pattern (27 bp):
TAAGCACCAAAGTGCAAATAATTACGA
Found at i:26019140 original size:7 final size:7
Alignment explanation
Indices: 26019128--26019185 Score: 81
Period size: 6 Copynumber: 9.0 Consensus size: 7
26019118 CTAAATGAAT
26019128 TCATTTC
1 TCATTTC
26019135 TCATTTC
1 TCATTTC
26019142 TCATTTC
1 TCATTTC
26019149 TCATTT-
1 TCATTTC
26019155 TCATTT-
1 TCATTTC
26019161 TCATTT-
1 TCATTTC
26019167 TCATTTC
1 TCATTTC
26019174 T-ATTT-
1 TCATTTC
26019179 TCATTTC
1 TCATTTC
26019186 AATTTTGAGA
Statistics
Matches: 48, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
5 1 0.02
6 26 0.54
7 21 0.44
ACGTcount: A:0.16, C:0.22, G:0.00, T:0.62
Consensus pattern (7 bp):
TCATTTC
Found at i:26019160 original size:6 final size:6
Alignment explanation
Indices: 26019127--26019184 Score: 73
Period size: 7 Copynumber: 9.2 Consensus size: 6
26019117 TCTAAATGAA
26019127 TTCATT TCTCATT TCTCATT TCTCATT TTCATT TTCATT TTCA-T TTCTATT
1 TTCATT T-TCATT T-TCATT T-TCATT TTCATT TTCATT TTCATT TTC-ATT
26019178 TTCATT T
1 TTCATT T
26019185 CAATTTTGAG
Statistics
Matches: 49, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
5 4 0.08
6 21 0.43
7 24 0.49
ACGTcount: A:0.16, C:0.21, G:0.00, T:0.64
Consensus pattern (6 bp):
TTCATT
Found at i:26019166 original size:12 final size:13
Alignment explanation
Indices: 26019127--26019185 Score: 95
Period size: 12 Copynumber: 4.6 Consensus size: 13
26019117 TCTAAATGAA
26019127 TTCATTTCTCATT
1 TTCATTTCTCATT
26019140 TCTCATTTCTCATT
1 T-TCATTTCTCATT
26019154 TTCATTT-TCATT
1 TTCATTTCTCATT
26019166 TTCATTTCT-ATT
1 TTCATTTCTCATT
26019178 TTCATTTC
1 TTCATTTC
26019186 AATTTTGAGA
Statistics
Matches: 44, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
12 23 0.52
13 8 0.18
14 13 0.30
ACGTcount: A:0.15, C:0.22, G:0.00, T:0.63
Consensus pattern (13 bp):
TTCATTTCTCATT
Found at i:26023389 original size:27 final size:27
Alignment explanation
Indices: 26023359--26023434 Score: 143
Period size: 27 Copynumber: 2.8 Consensus size: 27
26023349 TATTATTAGC
26023359 CCCAATTCCCAGAGGGTCGTGGGCAAT
1 CCCAATTCCCAGAGGGTCGTGGGCAAT
26023386 CCCAATTCCCAGAGGGTCGTGGGCAAT
1 CCCAATTCCCAGAGGGTCGTGGGCAAT
*
26023413 CCCAATTCCCAAAGGGTCGTGG
1 CCCAATTCCCAGAGGGTCGTGG
26023435 ACTACTCTGA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.18
Consensus pattern (27 bp):
CCCAATTCCCAGAGGGTCGTGGGCAAT
Found at i:26029379 original size:2 final size:2
Alignment explanation
Indices: 26029372--26029404 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
26029362 ATAAGCTGAG
26029372 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26029405 GGTAAAAAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26030162 original size:23 final size:23
Alignment explanation
Indices: 26030129--26030226 Score: 108
Period size: 23 Copynumber: 4.3 Consensus size: 23
26030119 AAACACATAA
*
26030129 TATTCTGTAAAGCCTTTGTGGCG
1 TATTCTATAAAGCCTTTGTGGCG
* *
26030152 TATTCTATAAAGACTTTGTGGCA
1 TATTCTATAAAGCCTTTGTGGCG
* *
26030175 TATTCTATAAAGCCTTTCTAGCG
1 TATTCTATAAAGCCTTTGTGGCG
* * *
26030198 TATTCTGTGATG-CTTGTGTGGCG
1 TATTCTATAAAGCCTT-TGTGGCG
26030221 TATTCT
1 TATTCT
26030227 GTGATGCCCT
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
22 3 0.05
23 59 0.95
ACGTcount: A:0.20, C:0.16, G:0.21, T:0.42
Consensus pattern (23 bp):
TATTCTATAAAGCCTTTGTGGCG
Found at i:26041147 original size:128 final size:128
Alignment explanation
Indices: 26040919--26041384 Score: 727
Period size: 128 Copynumber: 3.6 Consensus size: 128
26040909 TCGGTGAAAT
* ** * * * * *
26040919 CACAAGTCCTATATCCCTGGGCAGCAGTGGAATAGGTTAGAAATTGTAGATTTTTTCTCCCTAAA
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGTAAATCTTGTCTCCCTAAG
* *
26040984 CAGTAGCGGAGCAGATCGAAGATGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
66 CAGTAGCGGAGCAGATCAAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
* * *
26041047 CACAAGTCTTATGTCCCTAACAAGCAGTGGAATAGGTTGGAAATTGTAAATCTTGTCTCCCTAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGTAAATCTTGTCTCCCTAAG
*
26041112 CAGTAGCGGAGCAGATCAAAGACGACGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
66 CAGTAGCGGAGCAGATCAAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
* * * **
26041175 CACAAGTCCTATGTCCCTGACCAGTAGTGGAATAGGTTGGAAATTGCAGATCTTGTCTCTTTAAG
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGTAAATCTTGTCTCCCTAAG
*
26041240 CAGTAGCGGAGCAGATCAAAGACGGCGAATCTTATTTTCAAGTGTAAGGAAGCAGATTTAAGC
66 CAGTAGCGGAGCAGATCAAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
*
26041303 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTG-AAGATTTTGTCTCCCTAA
1 CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGTAA-ATCTTGTCTCCCTAA
26041367 GCAGTAGCGGAGCAGATC
65 GCAGTAGCGGAGCAGATC
26041385 CCCTGCAGTG
Statistics
Matches: 308, Mismatches: 29, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
127 1 0.00
128 307 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (128 bp):
CACAAGTCCTATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTGTAAATCTTGTCTCCCTAAG
CAGTAGCGGAGCAGATCAAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGC
Found at i:26041400 original size:63 final size:63
Alignment explanation
Indices: 26041326--26041447 Score: 235
Period size: 63 Copynumber: 1.9 Consensus size: 63
26041316 TCCCTGACCA
26041326 GCAGTGGAATAGGTTGGAAATTGAAGATTTTGTCTCCCTAAGCAGTAGCGGAGCAGATCCCCT
1 GCAGTGGAATAGGTTGGAAATTGAAGATTTTGTCTCCCTAAGCAGTAGCGGAGCAGATCCCCT
*
26041389 GCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAGCAGTAGCGGAGCAGATC
1 GCAGTGGAATAGGTTGGAAATTGAAGATTTTGTCTCCCTAAGCAGTAGCGGAGCAGATC
26041448 GAAGACGGTG
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 58 1.00
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (63 bp):
GCAGTGGAATAGGTTGGAAATTGAAGATTTTGTCTCCCTAAGCAGTAGCGGAGCAGATCCCCT
Found at i:26041524 original size:191 final size:190
Alignment explanation
Indices: 26041200--26041574 Score: 653
Period size: 191 Copynumber: 2.0 Consensus size: 190
26041190 CCTGACCAGT
**
26041200 AGTGGAATAGGTTGGAAATTGCAGATCTTGTCTCTTTAAGCAGTAGCGGAGCAGATCAAAGACGG
1 AGTGGAATAGGTTGGAAATTGCAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCAAAGACGG
*
26041265 CGAATCTTATTTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATGTCCCTGACCAGCAG
66 CGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATGTCCCTGACCAGCAG
*
26041330 TGGAATAGGTTGGAAATTG-AAGATTTTGTCTCCCTAAGCAGTAGCGGAGCAGATCCCCTGC
131 TGGAATAGGTTAGAAATTGCAA-A-TTTGTCTCCCTAAGCAGTAGCGGAGCAGATCCCCTGC
* *
26041391 AGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGACGG
1 AGTGGAATAGGTTGGAAATTGCAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCAAAGACGG
*
26041456 TGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATGTCCCTGACCAGCAG
66 CGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATGTCCCTGACCAGCAG
*
26041521 TGGAATAGGTTAGAAATTGCAAATTTGTCTTCCTAAGCAGTAGCGGAGCAGATC
131 TGGAATAGGTTAGAAATTGCAAATTTGTCTCCCTAAGCAGTAGCGGAGCAGATC
26041575 GAAGACGGTG
Statistics
Matches: 175, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
190 30 0.17
191 143 0.82
192 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (190 bp):
AGTGGAATAGGTTGGAAATTGCAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGATCAAAGACGG
CGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATGTCCCTGACCAGCAG
TGGAATAGGTTAGAAATTGCAAATTTGTCTCCCTAAGCAGTAGCGGAGCAGATCCCCTGC
Found at i:26041621 original size:127 final size:128
Alignment explanation
Indices: 26041389--26041621 Score: 423
Period size: 127 Copynumber: 1.8 Consensus size: 128
26041379 CAGATCCCCT
* *
26041389 GCAGTGGAATAGGTTGGAAATTGCAGATTTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGAC
1 GCAGTGGAATAGGTTAGAAATTGCAGAATTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGAC
*
26041454 GGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATGTCCCTGACCA
66 GGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTGAAGCCACAAGTCCTATGTCCCTGACCA
*
26041517 GCAGTGGAATAGGTTAGAAATTGCA-AATTTGTCTTCCTAAGCAGTAGCGGAGCAGATCGAAGAC
1 GCAGTGGAATAGGTTAGAAATTGCAGAATTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGAC
26041581 GGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTGAAGCC
66 GGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTGAAGCC
26041622 GATGATCCTA
Statistics
Matches: 101, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
127 77 0.76
128 24 0.24
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.25
Consensus pattern (128 bp):
GCAGTGGAATAGGTTAGAAATTGCAGAATTTGTCTCCCTAAGCAGTAGCGGAGCAGATCGAAGAC
GGTGAATCTTATCTTCAAGTGTAAGGAAGCAGATTGAAGCCACAAGTCCTATGTCCCTGACCA
Found at i:26041679 original size:44 final size:43
Alignment explanation
Indices: 26041625--26042136 Score: 195
Period size: 44 Copynumber: 11.8 Consensus size: 43
26041615 TGAAGCCGAT
* * *
26041625 GATCCTATCTCCCTGAAGTTGTAGTGGAACAGATTAAAGTAATA
1 GATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAGTAATA
* * ** *
26041669 GATCTTATCTCTCTGAAGTTGCAGTAGAGTGGA-T-CGT-ATCA
1 GATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGTAAT-A
* * ** * *
26041710 GGTCTTACCTCCCTGAAGTCACAGTGGAGCAGACTAAG-AAAA
1 GATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGTAATA
* *** * *** *
26041752 CAAGTCTTATC-CCCTTGAAGTCATAGTGGGGCAGGCGGAAG-AAGCA
1 -GA-TCTTATCTCCC-TGAAGTTGCAGTGGAGCA-GATTAAGTAA-TA
* * *
26041798 AATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTCGATA
1 GATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAGT-AATA
* * *
26041843 -ATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATA
1 GATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAGTAATA
* * * ** * * *
26041886 GATCTAATCTCTCTGAAGTTGCAGTAGAGTGGA-T-CGCATTA
1 GATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGTAATA
* * * ** * * * *
26041927 GGTCTTACCTCCCTAAAGTCACAGTGGAGTAGAGTGAG-AAAA
1 GATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGTAATA
* * ** ** *
26041969 CAAGTCTTATCCCCCTGAAGTCACAGTAGG-GCAGACGGAAG-AAGCA
1 -GA-TCTTATCTCCCTGAAGTTGCAGT-GGAGCAGA-TTAAGTAA-TA
* * * *
26042015 AATCTTATCTCCCTGAGGTTGTAGTGGAGCAGATTGAAGTCGATA
1 GATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAGT-AATA
* * *
26042060 -ATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATA
1 GATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAGTAATA
* * * *
26042103 AATCTTATCTCTCTGAAGTTACAGTAGAGCAGAT
1 GATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
26042137 CGCATCAAGT
Statistics
Matches: 349, Mismatches: 93, Indels: 52
0.71 0.19 0.11
Matches are distributed among these distances:
40 2 0.01
41 56 0.16
42 5 0.01
43 17 0.05
44 243 0.70
45 22 0.06
46 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27
Consensus pattern (43 bp):
GATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAGTAATA
Found at i:26041990 original size:217 final size:217
Alignment explanation
Indices: 26041608--26042149 Score: 895
Period size: 217 Copynumber: 2.5 Consensus size: 217
26041598 AGTGTAAGGA
* * * *
26041608 AGCAGATTGAAGCCGATGATCCTATCTCCCTGAAGTTGTAGTGGAACAGATTAAAGTAATAGATC
1 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
* *
26041673 TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGTATCAGGTCTTACCTCCCTGAAGTCACAGTGGA
66 TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTACCTCCCTAAAGTCACAGTGGA
* * * *
26041738 GCAGACTAAGAAAACAAGTCTTATCCCCTTGAAGTCATAGTGGGGCAGGCGGAAGAAGCAAATCT
131 GCAGACTAAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTAGGGCAGACGGAAGAAGCAAATCT
26041803 TATCTCCCTGAGGTTGCAGTGG
196 TATCTCCCTGAGGTTGCAGTGG
26041825 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
1 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
* *
26041890 TAATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATTAGGTCTTACCTCCCTAAAGTCACAGTGGA
66 TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTACCTCCCTAAAGTCACAGTGGA
* * *
26041955 GTAGAGTGAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTAGGGCAGACGGAAGAAGCAAATCT
131 GCAGACTAAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTAGGGCAGACGGAAGAAGCAAATCT
*
26042020 TATCTCCCTGAGGTTGTAGTGG
196 TATCTCCCTGAGGTTGCAGTGG
*
26042042 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAAATC
1 AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
* ** *
26042107 TTATCTCTCTGAAGTTACAGTAGAGCAGATCGCATCAAGTCTT
66 TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTT
26042150 GCCGACTAAA
Statistics
Matches: 302, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
217 302 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27
Consensus pattern (217 bp):
AGCAGATTGAAGTCGATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATC
TTATCTCTCTGAAGTTGCAGTAGAGTGGATCGCATCAGGTCTTACCTCCCTAAAGTCACAGTGGA
GCAGACTAAGAAAACAAGTCTTATCCCCCTGAAGTCACAGTAGGGCAGACGGAAGAAGCAAATCT
TATCTCCCTGAGGTTGCAGTGG
Found at i:26049692 original size:29 final size:28
Alignment explanation
Indices: 26049660--26049731 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 28
26049650 TTCCTTTATG
* *
26049660 GAGATTTCCACAGAGGT-TTTCCTTTGACA
1 GAGATTTCCACAAAAGTGTTTCCTTT--CA
**
26049689 GAGATCACCACAAAAGTGTTTCCTTTCA
1 GAGATTTCCACAAAAGTGTTTCCTTTCA
26049717 GAGATTTTCCACAAA
1 GAGA-TTTCCACAAA
26049732 GGCATTCTTA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
28 6 0.17
29 21 0.60
30 8 0.23
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (28 bp):
GAGATTTCCACAAAAGTGTTTCCTTTCA
Found at i:26049851 original size:61 final size:61
Alignment explanation
Indices: 26049782--26049912 Score: 165
Period size: 61 Copynumber: 2.1 Consensus size: 61
26049772 TAGAGTTCCG
** * * * *
26049782 CCACAAAGGTTTTCCTTTACATCTAGTACTCGTCACAAATGCTTTCCTATCCA-ATGTTTTA
1 CCACAAAGGTAGTCCTTTACATCCAATACTCGCCACAAAGGCTTTCCTATCCAGA-GTTTTA
* * *
26049843 CCACAAAGGTAGTCCTTTACATCCAATACTCGCCACAAAGGCTTTCCTGTCTAGAGTTTTG
1 CCACAAAGGTAGTCCTTTACATCCAATACTCGCCACAAAGGCTTTCCTATCCAGAGTTTTA
26049904 CCACAAAGG
1 CCACAAAGG
26049913 CGTCTTTTTT
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
61 59 0.98
62 1 0.02
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.31
Consensus pattern (61 bp):
CCACAAAGGTAGTCCTTTACATCCAATACTCGCCACAAAGGCTTTCCTATCCAGAGTTTTA
Found at i:26050114 original size:53 final size:53
Alignment explanation
Indices: 26050056--26050243 Score: 243
Period size: 53 Copynumber: 3.5 Consensus size: 53
26050046 TTATAACTCG
* *
26050056 CCAGTTACGATCTTACACGATATGGTCTTCTTCCTATATGATGCCATAACCCA
1 CCAGTTATGATCTTACACGATATGGTCTTCTTCCCATATGATGCCATAACCCA
* * * * * * *
26050109 TCAGTTATGGTCTTATACAATTTGGTGTTCTTCCCATATGATGTCATAACCCA
1 CCAGTTATGATCTTACACGATATGGTCTTCTTCCCATATGATGCCATAACCCA
* *
26050162 CCTGTTAT-AGTTTTACACGATATGGTCTTCTTCCCATATGATGCCATAACCCA
1 CCAGTTATGA-TCTTACACGATATGGTCTTCTTCCCATATGATGCCATAACCCA
* *
26050215 CCAGTTATGGTCTTACAAGATATGGTCTT
1 CCAGTTATGATCTTACACGATATGGTCTT
26050244 ATAATGTTAT
Statistics
Matches: 111, Mismatches: 22, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
53 111 1.00
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (53 bp):
CCAGTTATGATCTTACACGATATGGTCTTCTTCCCATATGATGCCATAACCCA
Found at i:26055960 original size:13 final size:13
Alignment explanation
Indices: 26055944--26055971 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
26055934 TTAACCCTGC
26055944 ATTTTATAATTTA
1 ATTTTATAATTTA
26055957 ATTTTATAATTTA
1 ATTTTATAATTTA
26055970 AT
1 AT
26055972 CTAACTCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
ATTTTATAATTTA
Found at i:26070233 original size:11 final size:12
Alignment explanation
Indices: 26070198--26070233 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
26070188 CCATACCATG
26070198 TGATCCATAATT
1 TGATCCATAATT
26070210 TGATCCATAATT
1 TGATCCATAATT
26070222 TGATCC-TAATT
1 TGATCCATAATT
26070233 T
1 T
26070234 CAAGCCATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 6 0.25
12 18 0.75
ACGTcount: A:0.31, C:0.17, G:0.08, T:0.44
Consensus pattern (12 bp):
TGATCCATAATT
Found at i:26071766 original size:34 final size:36
Alignment explanation
Indices: 26071683--26071783 Score: 102
Period size: 34 Copynumber: 2.9 Consensus size: 36
26071673 AAATCATTTG
*
26071683 TGTGCCCAACACTAGTCAAACTAGTCAACAAATTAT
1 TGTGCCCAACACTAGTCAAACTACTCAACAAATTAT
* * *
26071719 TGCGCCCAGCACTAGTCAAA-TAACT-AAC-GA-TAGT
1 TGTGCCCAACACTAGTCAAACT-ACTCAACAAATTA-T
* *
26071753 TGTGCCCAACACTAGTCAAACGAGTCAACAA
1 TGTGCCCAACACTAGTCAAACTACTCAACAA
26071784 TTTTTTACAC
Statistics
Matches: 51, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
33 2 0.04
34 22 0.43
35 7 0.14
36 20 0.39
ACGTcount: A:0.38, C:0.27, G:0.15, T:0.21
Consensus pattern (36 bp):
TGTGCCCAACACTAGTCAAACTACTCAACAAATTAT
Found at i:26071804 original size:70 final size:70
Alignment explanation
Indices: 26071683--26071838 Score: 188
Period size: 70 Copynumber: 2.2 Consensus size: 70
26071673 AAATCATTTG
* * *
26071683 TGTGCCCAACACTAGTCAAACTAGTCAACAAATTATTGCGCCCAGCACTAGTCAAATAACTAAC-
1 TGTGCCCAACACTAGTCAAACGAGTCAACAAATTATTACACCCAGCACTAGTCAAATAACTAACA
*
26071747 GATAGT
66 G-TAAT
* * * ** * *
26071753 TGTGCCCAACACTAGTCAAACGAGTCAACAATTTTTTACACCTAGTGCTAGTCAGATAACTGACA
1 TGTGCCCAACACTAGTCAAACGAGTCAACAAATTATTACACCCAGCACTAGTCAAATAACTAACA
26071818 GTAAT
66 GTAAT
*
26071823 TGTGCCCAGCACTAGT
1 TGTGCCCAACACTAGT
26071839 TAGATAAACT
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
70 72 0.99
71 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (70 bp):
TGTGCCCAACACTAGTCAAACGAGTCAACAAATTATTACACCCAGCACTAGTCAAATAACTAACA
GTAAT
Found at i:26074231 original size:25 final size:24
Alignment explanation
Indices: 26074203--26074284 Score: 94
Period size: 25 Copynumber: 3.3 Consensus size: 24
26074193 CATGTAAACA
26074203 GGAAGCTCTTCCGAGCCATATAACG
1 GGAAGCTCTT-CGAGCCATATAACG
* *
26074228 GGAAGTTCATTTGAGCCATATAACG
1 GGAAGCTC-TTCGAGCCATATAACG
* *
26074253 GGAAGCTCATGCGAGCCA-ATATCG
1 GGAAGCTC-TTCGAGCCATATAACG
26074277 GGAAGCTC
1 GGAAGCTC
26074285 CGGAGAGCCA
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
24 13 0.26
25 35 0.70
26 2 0.04
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (24 bp):
GGAAGCTCTTCGAGCCATATAACG
Found at i:26074339 original size:25 final size:25
Alignment explanation
Indices: 26074251--26074467 Score: 163
Period size: 25 Copynumber: 8.7 Consensus size: 25
26074241 AGCCATATAA
*
26074251 CGGGAAGCTCATGCGAGCCAA-TAT
1 CGGGAAGCTCATGAGAGCCAATTAT
**
26074275 CGGGAAGCTCCGGAGAGCC-ATTAAT
1 CGGGAAGCTCATGAGAGCCAATT-AT
* *
26074300 CAGTAAGCTCATGAGAGCCAATTAT
1 CGGGAAGCTCATGAGAGCCAATTAT
* * * *
26074325 CGGGAACCTCGTGAGAGCCAAATAA
1 CGGGAAGCTCATGAGAGCCAATTAT
*
26074350 CGGGAAGCTCAAGAGAGCC-ATATAT
1 CGGGAAGCTCATGAGAGCCAAT-TAT
** * * * *
26074375 CGATATA-CTCATAAGAGCTAAATAA
1 CGGGA-AGCTCATGAGAGCCAATTAT
* * * * *
26074400 CGAGAAGCTCGTGAAAGCCTAGTAT
1 CGGGAAGCTCATGAGAGCCAATTAT
26074425 CGGGAAGCTCATGAGAGCCAATTAT
1 CGGGAAGCTCATGAGAGCCAATTAT
* * *
26074450 TGGGATGCTCATAAGAGC
1 CGGGAAGCTCATGAGAGC
26074468 TAAAAAATGG
Statistics
Matches: 145, Mismatches: 41, Indels: 13
0.73 0.21 0.07
Matches are distributed among these distances:
23 1 0.01
24 19 0.13
25 120 0.83
26 5 0.03
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.19
Consensus pattern (25 bp):
CGGGAAGCTCATGAGAGCCAATTAT
Found at i:26074358 original size:50 final size:50
Alignment explanation
Indices: 26074226--26074445 Score: 187
Period size: 50 Copynumber: 4.4 Consensus size: 50
26074216 AGCCATATAA
* ** * *
26074226 CGGGAAGTTCATTTGAGCCATATAACGGGAAGCTCATGCGAGCCAA-TAT
1 CGGGAAGCTCATGAGAGCCAAATAACGGGAAGCTCATGAGAGCCAATTAT
** * * *
26074275 CGGGAAGCTCCGGAGAGCC-ATTAATCAGTAAGCTCATGAGAGCCAATTAT
1 CGGGAAGCTCATGAGAGCCAAATAA-CGGGAAGCTCATGAGAGCCAATTAT
* * *
26074325 CGGGAACCTCGTGAGAGCCAAATAACGGGAAGCTCAAGAGAGCC-ATATAT
1 CGGGAAGCTCATGAGAGCCAAATAACGGGAAGCTCATGAGAGCCAAT-TAT
** * * * * * * *
26074375 CGATATA-CTCATAAGAGCTAAATAACGAGAAGCTCGTGAAAGCCTAGTAT
1 CGGGA-AGCTCATGAGAGCCAAATAACGGGAAGCTCATGAGAGCCAATTAT
26074425 CGGGAAGCTCATGAGAGCCAA
1 CGGGAAGCTCATGAGAGCCAA
26074446 TTATTGGGAT
Statistics
Matches: 133, Mismatches: 31, Indels: 13
0.75 0.18 0.07
Matches are distributed among these distances:
48 3 0.02
49 35 0.26
50 89 0.67
51 6 0.05
ACGTcount: A:0.35, C:0.21, G:0.26, T:0.19
Consensus pattern (50 bp):
CGGGAAGCTCATGAGAGCCAAATAACGGGAAGCTCATGAGAGCCAATTAT
Found at i:26074370 original size:75 final size:74
Alignment explanation
Indices: 26074240--26074444 Score: 209
Period size: 75 Copynumber: 2.7 Consensus size: 74
26074230 AAGTTCATTT
* * * **
26074240 GAGCCATATAACGGGAAGCTCATGCGAGCCAATATCGGGAAGCTCCGGAGAGCCAT-TAATC-AG
1 GAGCCAAATAACGGGAAGCTCGTGAGAGCCAATATCGGGAAGCTCAAGAGAGCCATAT-ATCGA-
*
26074303 TA-AGCTCATGA
64 TATA-CTCATAA
* * * *
26074314 GAGCCAATTATCGGGAACCTCGTGAGAGCCAAATAACGGGAAGCTCAAGAGAGCCATATATCGAT
1 GAGCCAAATAACGGGAAGCTCGTGAGAGCC-AATATCGGGAAGCTCAAGAGAGCCATATATCGAT
26074379 ATACTCATAA
65 ATACTCATAA
* * * * *
26074389 GAGCTAAATAACGAGAAGCTCGTGAAAGCCTAGTATCGGGAAGCTCATGAGAGCCA
1 GAGCCAAATAACGGGAAGCTCGTGAGAGCC-AATATCGGGAAGCTCAAGAGAGCCA
26074445 ATTATTGGGA
Statistics
Matches: 107, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
74 24 0.22
75 80 0.75
76 3 0.03
ACGTcount: A:0.35, C:0.21, G:0.26, T:0.18
Consensus pattern (74 bp):
GAGCCAAATAACGGGAAGCTCGTGAGAGCCAATATCGGGAAGCTCAAGAGAGCCATATATCGATA
TACTCATAA
Found at i:26074461 original size:75 final size:75
Alignment explanation
Indices: 26074332--26074471 Score: 183
Period size: 75 Copynumber: 1.9 Consensus size: 75
26074322 TATCGGGAAC
* *
26074332 CTCGTGAGAGCCAAATAACGGGAAGCTCAAGAGAGCCATATATCGATATACTCATAAGAGCTAAA
1 CTCGTGAAAGCCAAATAACGGGAAGCTCAAGAGAGCCATATATCGAGATACTCATAAGAGCTAAA
26074397 TAACGAGAAG
66 TAACGAGAAG
* * * * * * *
26074407 CTCGTGAAAGCCTAGTATCGGGAAGCTCATGAGAGCCA-ATTATTGGGATGCTCATAAGAGCTAA
1 CTCGTGAAAGCCAAATAACGGGAAGCTCAAGAGAGCCATA-TATCGAGATACTCATAAGAGCTAA
26074471 A
65 A
26074472 AAATGGGACG
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
74 1 0.02
75 54 0.98
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (75 bp):
CTCGTGAAAGCCAAATAACGGGAAGCTCAAGAGAGCCATATATCGAGATACTCATAAGAGCTAAA
TAACGAGAAG
Found at i:26077468 original size:131 final size:130
Alignment explanation
Indices: 26077225--26077529 Score: 325
Period size: 131 Copynumber: 2.3 Consensus size: 130
26077215 ATATCAAATC
* * * *
26077225 AACGACATTTTAAGGTTGTTGTTAATCTTTTAATGTTTAACAATAACTCATTTTGTCATTTACAA
1 AACGACATTTTAAGGTTGTTGCTAATATTTTAATGTTTAACAATAAATCATTTTGT-AGTTACAA
* * * *
26077290 ACTTTATTAAGAATTTACAATGACAAATCGTGTTGTTGCAACCAATAAGTAGAAAATTAAAATAG
65 ACTTTATTAAGAATTCACAATGACAAATCATGTTATTGCAACCAATAAGCAG-AAATTAAAATA-
26077355 C-T
128 CTT
* *
26077357 AACGACATTTTAAGGTTGTTGCTAATATTTTTAACGTTTAACAATAAATTATTTAT-T-GTTACA
1 AACGACATTTTAAGGTTGTTGCTAATA-TTTTAATGTTTAACAATAAATCATTT-TGTAGTTACA
* * ** *
26077420 AATTTTATT-AGTAATTCACAACT-ACAAATCAT-TTCATTGCTATTAATAAGCAGAAATTAAAT
64 AACTTTATTAAG-AATTCACAA-TGACAAATCATGTT-ATTGCAACCAATAAGCAGAAATTAAAA
26077482 TACTT
126 TACTT
* * * *
26077487 ATCAATATTTTAAGGTTGTTGCTAAGATTTTAATGTTTAACAA
1 AACGACATTTTAAGGTTGTTGCTAATATTTTAATGTTTAACAA
26077530 CCTGTTTTTT
Statistics
Matches: 147, Mismatches: 20, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
129 16 0.11
130 38 0.26
131 42 0.29
132 26 0.18
133 24 0.16
134 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.40
Consensus pattern (130 bp):
AACGACATTTTAAGGTTGTTGCTAATATTTTAATGTTTAACAATAAATCATTTTGTAGTTACAAA
CTTTATTAAGAATTCACAATGACAAATCATGTTATTGCAACCAATAAGCAGAAATTAAAATACTT
Found at i:26078810 original size:45 final size:45
Alignment explanation
Indices: 26078761--26078858 Score: 117
Period size: 45 Copynumber: 2.2 Consensus size: 45
26078751 GCGTAGTTCA
* *
26078761 GTTCTGTTATGCTCTGCTTTGTTTTGT-TATGTTCTGCTTTCCTCT
1 GTTCTGTTATACTCTGCTTTGTTTTGTGT-TGTTCTGCTCTCCTCT
* * * *
26078806 GTTCTGTTCTACTTTGCTTTGTTTTGTGTTGTTTTGCTCTGCTCT
1 GTTCTGTTATACTCTGCTTTGTTTTGTGTTGTTCTGCTCTCCTCT
*
26078851 GTCCTGTT
1 GTTCTGTT
26078859 CTGGTTGGGT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
45 44 0.98
46 1 0.02
ACGTcount: A:0.03, C:0.19, G:0.19, T:0.58
Consensus pattern (45 bp):
GTTCTGTTATACTCTGCTTTGTTTTGTGTTGTTCTGCTCTCCTCT
Found at i:26078828 original size:20 final size:20
Alignment explanation
Indices: 26078765--26078828 Score: 65
Period size: 20 Copynumber: 3.2 Consensus size: 20
26078755 AGTTCAGTTC
* * *
26078765 TGTTATGCTCTGCTTTGTTT
1 TGTTATGTTCTACTTTGCTT
* * *
26078785 TGTTATGTTCTGCTTTCCTC
1 TGTTATGTTCTACTTTGCTT
*
26078805 TGTTCTGTTCTACTTTGCTT
1 TGTTATGTTCTACTTTGCTT
26078825 TGTT
1 TGTT
26078829 TTGTGTTGTT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.05, C:0.19, G:0.17, T:0.59
Consensus pattern (20 bp):
TGTTATGTTCTACTTTGCTT
Found at i:26078859 original size:45 final size:45
Alignment explanation
Indices: 26078775--26078860 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
26078765 TGTTATGCTC
* *
26078775 TGCTTTGTTTTGTTATGTTCTGCTTTCCTCTGTTCTGTTCTACTT
1 TGCTTTGTTTTGTTATGTTCTGCTCTCCTCTGTCCTGTTCTACTT
* *
26078820 TGCTTTGTTTTGTGT-TGTTTTGCTCTGCTCTGTCCTGTTCT
1 TGCTTTGTTTTGT-TATGTTCTGCTCTCCTCTGTCCTGTTCT
26078861 GGTTGGGTTG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
45 35 0.97
46 1 0.03
ACGTcount: A:0.02, C:0.20, G:0.19, T:0.59
Consensus pattern (45 bp):
TGCTTTGTTTTGTTATGTTCTGCTCTCCTCTGTCCTGTTCTACTT
Found at i:26098692 original size:30 final size:30
Alignment explanation
Indices: 26098656--26098716 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
26098646 AATTAATTTG
*
26098656 AAAGTCACAACAAAATATACCAATCAGTAA
1 AAAGTCACAACAAAATATACCAATCAATAA
26098686 AAAGTCACAACAAAATATACCAATCAATAA
1 AAAGTCACAACAAAATATACCAATCAATAA
26098716 A
1 A
26098717 CCAAAAGACG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.59, C:0.20, G:0.05, T:0.16
Consensus pattern (30 bp):
AAAGTCACAACAAAATATACCAATCAATAA
Found at i:26109670 original size:3 final size:3
Alignment explanation
Indices: 26109662--26109687 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
26109652 TTGAGAGTGA
26109662 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
26109688 ATACAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:26110289 original size:3 final size:3
Alignment explanation
Indices: 26110281--26110317 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
26110271 GATTAAAATC
26110281 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
26110318 CATTTCTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:26125321 original size:20 final size:20
Alignment explanation
Indices: 26125285--26125323 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26125275 ATGAATATTG
*
26125285 TGTGGTGTGAATGGTGGTCT
1 TGTGGTGTGAATAGTGGTCT
*
26125305 TGTGGTGTGATTAGTGGTC
1 TGTGGTGTGAATAGTGGTC
26125324 GGTAAGGTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.10, C:0.05, G:0.44, T:0.41
Consensus pattern (20 bp):
TGTGGTGTGAATAGTGGTCT
Found at i:26135359 original size:10 final size:10
Alignment explanation
Indices: 26135346--26135375 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
26135336 TCATTATGTG
*
26135346 ATTTTATTTT
1 ATTTTGTTTT
26135356 ATTTTGTTTT
1 ATTTTGTTTT
26135366 ATTTTGTTTT
1 ATTTTGTTTT
26135376 TGTTCAAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.13, C:0.00, G:0.07, T:0.80
Consensus pattern (10 bp):
ATTTTGTTTT
Found at i:26145398 original size:28 final size:27
Alignment explanation
Indices: 26145356--26145409 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
26145346 TTTTCCCTTT
* *
26145356 CTCCTTTCTCTTCTTCAACCTTCTTCAA
1 CTCCGTTCTCATCTTC-ACCTTCTTCAA
*
26145384 CTCCGTTCTCATCTTCAGCTTCTTCA
1 CTCCGTTCTCATCTTCACCTTCTTCA
26145410 TTACTAAGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.13, C:0.39, G:0.04, T:0.44
Consensus pattern (27 bp):
CTCCGTTCTCATCTTCACCTTCTTCAA
Found at i:26147670 original size:20 final size:20
Alignment explanation
Indices: 26147645--26147684 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
26147635 AATATTTTTC
*
26147645 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
26147665 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
26147685 TTATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:26147691 original size:34 final size:35
Alignment explanation
Indices: 26147633--26147699 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
26147623 CAAACACCAG
* *
26147633 AAAATATTTTTCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
26147668 AAAACATTTTCCAG-AAATTATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
26147700 CATTTTACTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.46, C:0.10, G:0.09, T:0.34
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:26149235 original size:16 final size:17
Alignment explanation
Indices: 26149210--26149251 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
26149200 TAACAGGAGA
*
26149210 ATCT-GCCAAATC-AGG
1 ATCTCGCCAAAGCAAGG
26149225 ATCTCGCCAAAGCAAGG
1 ATCTCGCCAAAGCAAGG
*
26149242 AACTCGCCAA
1 ATCTCGCCAA
26149252 CTGCGAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 4 0.17
16 7 0.30
17 12 0.52
ACGTcount: A:0.36, C:0.31, G:0.19, T:0.14
Consensus pattern (17 bp):
ATCTCGCCAAAGCAAGG
Found at i:26162282 original size:12 final size:12
Alignment explanation
Indices: 26162265--26162291 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
26162255 GAGAGATCCT
26162265 ACTAGCTTAATG
1 ACTAGCTTAATG
26162277 ACTAGCTTAATG
1 ACTAGCTTAATG
26162289 ACT
1 ACT
26162292 CATTATTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (12 bp):
ACTAGCTTAATG
Found at i:26164478 original size:50 final size:50
Alignment explanation
Indices: 26164354--26164600 Score: 223
Period size: 50 Copynumber: 4.8 Consensus size: 50
26164344 GATAATAACA
* * ** * *
26164354 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGTATGTTTTC-TGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATAT-CGG
* * * * **
26164403 TGCCAATGCCATATCCCAAATATGGTCCTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* *
26164453 TGCCCATGCCATGTCCCAGACATGGTCTTAC-TGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAT-GGGACCTCTCATATCGG
* *
26164503 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GG
* *
26164559 TGCCAATGCCATGTTCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
26164601 TTACCTAAAT
Statistics
Matches: 164, Mismatches: 23, Indels: 15
0.81 0.11 0.07
Matches are distributed among these distances:
48 6 0.04
49 34 0.21
50 81 0.49
51 1 0.01
53 2 0.01
56 40 0.24
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:26170390 original size:50 final size:49
Alignment explanation
Indices: 26170262--26170456 Score: 180
Period size: 50 Copynumber: 3.9 Consensus size: 49
26170252 AATAATAACA
* ** * *
26170262 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTTC-TGTAC-
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATAT-CG
* * **
26170311 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATC-G
* ** ** *
26170361 TGCCCATGCCATGTCCTTGACATGGTCTTACGGGGGACCTCTCATCTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATC-G
*
26170411 TTCCAACT-CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
1 TGCCAA-TGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
26170457 ACCTCAATGA
Statistics
Matches: 119, Mismatches: 23, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
48 6 0.05
49 36 0.30
50 76 0.64
51 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (49 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCG
Found at i:26175446 original size:66 final size:66
Alignment explanation
Indices: 26175298--26175451 Score: 164
Period size: 66 Copynumber: 2.3 Consensus size: 66
26175288 GGTCAAAGTG
** * * * * **
26175298 TCACTTCCATTACTTTCCCAAATACAAATTCTTTTAGTGAAAAAGTCAATTGTTGTGGTCAATGC
1 TCACTTCTGTTACTCTCCCAAATACAAATTCGTTCAGTGAAAAAGTCAACTGTTGTGGTCAAAAC
26175363 A
66 A
** * * * *
26175364 TCACTTCTGTCGCTCTCCCAAATGCAAATTCGTTCAGTGAAGAAGTCAACTGTTGTGGTTAAAAT
1 TCACTTCTGTTACTCTCCCAAATACAAATTCGTTCAGTGAAAAAGTCAACTGTTGTGGTCAAAAC
26175429 A
66 A
* *
26175430 TCACTTTTTTTACTCTCCCAAA
1 TCACTTCTGTTACTCTCCCAAA
26175452 ATAGAAAATT
Statistics
Matches: 70, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
66 70 1.00
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.36
Consensus pattern (66 bp):
TCACTTCTGTTACTCTCCCAAATACAAATTCGTTCAGTGAAAAAGTCAACTGTTGTGGTCAAAAC
A
Found at i:26179155 original size:20 final size:19
Alignment explanation
Indices: 26179132--26179195 Score: 87
Period size: 20 Copynumber: 3.4 Consensus size: 19
26179122 TTGAAATTTT
26179132 TTTAAATATTGGAAAATGTG
1 TTTAAATATTGGAAAAT-TG
*
26179152 TTTAAATCTTGG-AAATT-
1 TTTAAATATTGGAAAATTG
26179169 TTTAAATATTGGAAAATATG
1 TTTAAATATTGGAAAAT-TG
26179189 TTTAAAT
1 TTTAAAT
26179196 CTTTGATAAC
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
17 11 0.28
18 5 0.13
19 5 0.13
20 18 0.46
ACGTcount: A:0.41, C:0.02, G:0.14, T:0.44
Consensus pattern (19 bp):
TTTAAATATTGGAAAATTG
Found at i:26179306 original size:20 final size:20
Alignment explanation
Indices: 26179283--26179320 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26179273 ATTAAATGAT
26179283 TATTTTATA-ACTTATATTAA
1 TATTTTATATA-TTATATTAA
26179303 TATTTTATATATTATATT
1 TATTTTATATATTATATT
26179321 TTTTAATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (20 bp):
TATTTTATATATTATATTAA
Found at i:26185581 original size:18 final size:17
Alignment explanation
Indices: 26185558--26185605 Score: 51
Period size: 20 Copynumber: 2.6 Consensus size: 17
26185548 TAGAAAAACT
26185558 AATATTTTCTTATGGTAA
1 AATATTTTCTTAT-GTAA
*
26185576 AATATTTTTTCTTATTTAA
1 AATA--TTTTCTTATGTAA
*
26185595 AAAATTTTCTT
1 AATATTTTCTT
26185606 TAAATTGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 7 0.27
18 4 0.15
19 6 0.23
20 9 0.35
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.56
Consensus pattern (17 bp):
AATATTTTCTTATGTAA
Found at i:26185595 original size:19 final size:20
Alignment explanation
Indices: 26185562--26185602 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
26185552 AAAACTAATA
*
26185562 TTTTCTTATGGTAAAATATT
1 TTTTCTTATGGTAAAAAATT
*
26185582 TTTTCTTAT-TTAAAAAATT
1 TTTTCTTATGGTAAAAAATT
26185601 TT
1 TT
26185603 CTTTAAATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (20 bp):
TTTTCTTATGGTAAAAAATT
Found at i:26186739 original size:18 final size:18
Alignment explanation
Indices: 26186713--26186771 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
26186703 AATTCTAATG
*
26186713 TTTAATAAATTTTATATT
1 TTTATTAAATTTTATATT
*
26186731 TTTATTAAACTTTAATAATT
1 TTTATTAAA-TTTTAT-ATT
* *
26186751 TTT-CTAAAATTTAT-TT
1 TTTATTAAATTTTATATT
26186767 TTTAT
1 TTTAT
26186772 ATTTTTTTCT
Statistics
Matches: 32, Mismatches: 6, Indels: 7
0.71 0.13 0.16
Matches are distributed among these distances:
16 5 0.16
18 12 0.38
19 9 0.28
20 6 0.19
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTATTAAATTTTATATT
Found at i:26186938 original size:90 final size:90
Alignment explanation
Indices: 26186801--26186998 Score: 247
Period size: 90 Copynumber: 2.2 Consensus size: 90
26186791 TAAGAGCAAT
* * * * *
26186801 GGCTTAATTGCTTTTTTGAAATATTTTGAGTGTCTTTTTGATGCATTTTAAAAATTCAAGTACTC
1 GGCTTAATTGCTTTTTTGAAATAGTTTAAGGGTCTTTTTAATACATTTTAAAAATTCAAGTACTC
*
26186866 AATTGAGT-GAAAAAAAAAAGAAGG
66 AATTGAGTCGAAAAAAAAAAGAAAG
* * **
26186890 GGCTTAATTGCTTTTCTTGAAGA-AGTTTAAGGGTCTTTTTAATACATTTTGAAAGTTCAAGTGT
1 GGCTTAATTGCTTTT-TTGAA-ATAGTTTAAGGGTCTTTTTAATACATTTTAAAAATTCAAGTAC
26186954 TCAATTGAGTGCGAAAAAAAAAAGAAAG
64 TCAATTGAGT-CGAAAAAAAAAAGAAAG
* *
26186982 AGCTTAATTGTTTTTTT
1 GGCTTAATTGCTTTTTT
26186999 TTTTAAAGTT
Statistics
Matches: 93, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
89 15 0.16
90 47 0.51
91 3 0.03
92 28 0.30
ACGTcount: A:0.34, C:0.08, G:0.19, T:0.39
Consensus pattern (90 bp):
GGCTTAATTGCTTTTTTGAAATAGTTTAAGGGTCTTTTTAATACATTTTAAAAATTCAAGTACTC
AATTGAGTCGAAAAAAAAAAGAAAG
Found at i:26188324 original size:45 final size:46
Alignment explanation
Indices: 26188274--26188390 Score: 130
Period size: 46 Copynumber: 2.6 Consensus size: 46
26188264 GTTGTAATAA
* *
26188274 ACATTTTGCTGCTATTTTTGTTGAGT-AAATGTCGCATATGTGTGC
1 ACATTTTGCTGCTATTTTTGTTGAGTAAAATGCCGCATATGTGCGC
* * * *
26188319 ACATTTTGTTGTTGTTCTTGTTGAGTAAAATGCCGCATATGTGCGC
1 ACATTTTGCTGCTATTTTTGTTGAGTAAAATGCCGCATATGTGCGC
* * *
26188365 ACA-TCTGCTGCTGCTTTTTGATGAGT
1 ACATTTTGCTGCT-ATTTTTGTTGAGT
26188391 TTAATGATGC
Statistics
Matches: 58, Mismatches: 12, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
45 28 0.48
46 30 0.52
ACGTcount: A:0.19, C:0.15, G:0.23, T:0.43
Consensus pattern (46 bp):
ACATTTTGCTGCTATTTTTGTTGAGTAAAATGCCGCATATGTGCGC
Found at i:26197142 original size:22 final size:22
Alignment explanation
Indices: 26197116--26197168 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
26197106 AAATAATTCA
* *
26197116 ATAAATTTAATCCTTC-ATATCT
1 ATAAATTTAA-CATTCAAAATCT
*
26197138 ATAAATTTGACATTCAAAATCT
1 ATAAATTTAACATTCAAAATCT
26197160 ATAAATTTA
1 ATAAATTTA
26197169 CAAATCTACC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 4 0.15
22 22 0.85
ACGTcount: A:0.43, C:0.13, G:0.02, T:0.42
Consensus pattern (22 bp):
ATAAATTTAACATTCAAAATCT
Found at i:26198065 original size:2 final size:2
Alignment explanation
Indices: 26198058--26198094 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
26198048 TATGAATGGT
26198058 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26198095 TTTTCTATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:26203130 original size:23 final size:23
Alignment explanation
Indices: 26203095--26203139 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
26203085 TGGAGTATAA
* *
26203095 AAGTTTTATATTTTTATATGTAC
1 AAGTTTTATATTTATACATGTAC
26203118 AAGTTTTGA-ATTTATACATGTA
1 AAGTTTT-ATATTTATACATGTA
26203140 TATACAAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.33, C:0.04, G:0.11, T:0.51
Consensus pattern (23 bp):
AAGTTTTATATTTATACATGTAC
Found at i:26203184 original size:2 final size:2
Alignment explanation
Indices: 26203177--26203207 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
26203167 AAAAGGTATA
26203177 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
26203208 ACTTAAGATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:26203365 original size:2 final size:2
Alignment explanation
Indices: 26203358--26203383 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
26203348 GCAATTATGC
26203358 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
26203384 GTTCTGTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26203815 original size:42 final size:42
Alignment explanation
Indices: 26203743--26203998 Score: 372
Period size: 42 Copynumber: 6.1 Consensus size: 42
26203733 CAGTGCCTAT
* * *
26203743 CAGGTTTATTGCCAGTGAAAC-ATTTCAGACTTTACGTCTAG
1 CAGGCTTAATGCCGGTGAAACAATTTCAGACTTTACGTCTAG
*
26203784 CAGGCTTAATGCCGGTGAAATAATTTCAGACTTTACGTCTAG
1 CAGGCTTAATGCCGGTGAAACAATTTCAGACTTTACGTCTAG
*
26203826 CAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAG
1 CAGGCTTAATGCCGGTGAAACAATTTCAGACTTTACGTCTAG
* *
26203868 CAGGCTTAATGCCGGTGAAATAATTTTAGACTTTACGTCTAG
1 CAGGCTTAATGCCGGTGAAACAATTTCAGACTTTACGTCTAG
* * *
26203910 CAGGCTTAATACCGATGAAACAATATCAGACTTTACGTCTAG
1 CAGGCTTAATGCCGGTGAAACAATTTCAGACTTTACGTCTAG
* * * *
26203952 GAGGCTTAATGCCGGTGAAAC-ATTTCAGACTATATGTCTAA
1 CAGGCTTAATGCCGGTGAAACAATTTCAGACTTTACGTCTAG
26203993 CAGGCT
1 CAGGCT
26203999 AAGTGTCGGT
Statistics
Matches: 192, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
41 38 0.20
42 154 0.80
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.30
Consensus pattern (42 bp):
CAGGCTTAATGCCGGTGAAACAATTTCAGACTTTACGTCTAG
Found at i:26213553 original size:23 final size:23
Alignment explanation
Indices: 26213518--26213562 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
26213508 TGGAGTATAA
* *
26213518 AAGTTTTATATTTTTATATGTAC
1 AAGTTTTATATTTATACATGTAC
26213541 AAGTTTTGA-ATTTATACATGTA
1 AAGTTTT-ATATTTATACATGTA
26213563 TATACAAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.33, C:0.04, G:0.11, T:0.51
Consensus pattern (23 bp):
AAGTTTTATATTTATACATGTAC
Found at i:26213607 original size:2 final size:2
Alignment explanation
Indices: 26213600--26213630 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
26213590 AAAAGGTATA
26213600 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
26213631 ACTTAAGATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:26214224 original size:42 final size:42
Alignment explanation
Indices: 26214152--26214407 Score: 381
Period size: 42 Copynumber: 6.1 Consensus size: 42
26214142 CAGTGCCTAT
* * *
26214152 CAGGTTTATTGCCAGTGAAAC-ATTTCAGACTTTACGTCTAG
1 CAGGCTTAATGCCGGTGAAACAATTTCAGACTTTACGTCTAG
*
26214193 CAGGCTTAATGCCGGTGAAATAATTTCAGACTTTACGTCTAG
1 CAGGCTTAATGCCGGTGAAACAATTTCAGACTTTACGTCTAG
*
26214235 CAGGCTTAATGCCGGTGAAACAATATCAGACTTTACGTCTAG
1 CAGGCTTAATGCCGGTGAAACAATTTCAGACTTTACGTCTAG
*
26214277 CAGGCTTAATGCCGGTGAAATAATTTCAGACTTTACGTCTAG
1 CAGGCTTAATGCCGGTGAAACAATTTCAGACTTTACGTCTAG
* * *
26214319 CAGGCTTAATACCGGTGAAACAATATCAGACTTTACGTTTAG
1 CAGGCTTAATGCCGGTGAAACAATTTCAGACTTTACGTCTAG
* * * *
26214361 GAGGCTTAATGCCGGTAAAAC-ATTTCAGACTATATGTCTAG
1 CAGGCTTAATGCCGGTGAAACAATTTCAGACTTTACGTCTAG
26214402 CAGGCT
1 CAGGCT
26214408 AAGTGTTGGT
Statistics
Matches: 194, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
41 38 0.20
42 156 0.80
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.30
Consensus pattern (42 bp):
CAGGCTTAATGCCGGTGAAACAATTTCAGACTTTACGTCTAG
Found at i:26219841 original size:24 final size:23
Alignment explanation
Indices: 26219809--26220012 Score: 130
Period size: 24 Copynumber: 8.6 Consensus size: 23
26219799 ATAATAGATG
*
26219809 AAATTAAAATAATAATATATGAT
1 AAATTAAAATAATAATACATGAT
*
26219832 AAATTAAAA-AAGCAATTACACATGA-
1 AAATTAAAATAA-TAA-T--ACATGAT
*
26219857 AAACTTAGAATAATAATACAT-AT
1 AAA-TTAAAATAATAATACATGAT
26219880 AAAACTTAAAATAATAATACATGAT
1 -AAA-TTAAAATAATAATACATGAT
* * *
26219905 GAATTTAAATAACAAATACATGAT
1 AAATTAAAATAA-TAATACATGAT
* * **
26219929 AAATTTAAGTAATGGTA-ATGAT
1 AAATTAAAATAATAATACATGAT
* * * *
26219951 AATTTTAAAATAATAATATATTAC
1 AA-ATTAAAATAATAATACATGAT
**
26219975 AAATTAAAATAAT-ATTGATGAT
1 AAATTAAAATAATAATACATGAT
26219997 AAATTTAAGAATAATA
1 AAA-TTAA-AATAATA
26220013 TTAAGCTTAA
Statistics
Matches: 141, Mismatches: 25, Indels: 28
0.73 0.13 0.14
Matches are distributed among these distances:
22 18 0.13
23 49 0.35
24 54 0.38
25 6 0.04
26 12 0.09
27 2 0.01
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (23 bp):
AAATTAAAATAATAATACATGAT
Found at i:26228836 original size:37 final size:36
Alignment explanation
Indices: 26228785--26228901 Score: 97
Period size: 37 Copynumber: 3.3 Consensus size: 36
26228775 ATTTCAAAAA
* *
26228785 TAATAATATTTTAATAGTTTAATATTAAATTTAATT
1 TAATAGTATCTTAATAGTTTAATATTAAATTTAATT
*
26228821 TAATACGTATCTTAATAGTATT-TTATT-AATTTAATAT
1 TAATA-GTATCTTAATAGT-TTAATATTAAATTTAAT-T
26228858 TAA-AGTGA--TT-ATA--TTAATATTAAATTTAATT
1 TAATAGT-ATCTTAATAGTTTAATATTAAATTTAATT
*
26228889 TAATGTGTATCTT
1 TAAT-AGTATCTT
26228902 GTAGATAAAC
Statistics
Matches: 66, Mismatches: 5, Indels: 22
0.71 0.05 0.24
Matches are distributed among these distances:
30 2 0.03
31 8 0.12
32 9 0.14
33 5 0.08
34 4 0.06
35 2 0.03
36 15 0.23
37 19 0.29
38 2 0.03
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.51
Consensus pattern (36 bp):
TAATAGTATCTTAATAGTTTAATATTAAATTTAATT
Found at i:26229316 original size:14 final size:14
Alignment explanation
Indices: 26229297--26229334 Score: 58
Period size: 14 Copynumber: 2.6 Consensus size: 14
26229287 TCCTAGACAT
*
26229297 GCACCTTCTTATTA
1 GCACCTTCTCATTA
26229311 GCACCTTCTCATTA
1 GCACCTTCTCATTA
26229325 GCACACTTCT
1 GCAC-CTTCT
26229335 AACAACAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.21, C:0.34, G:0.08, T:0.37
Consensus pattern (14 bp):
GCACCTTCTCATTA
Found at i:26246233 original size:9 final size:9
Alignment explanation
Indices: 26246219--26246249 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
26246209 GTTAAACGAA
26246219 TCGAGTTAT
1 TCGAGTTAT
*
26246228 TCGAGTTAA
1 TCGAGTTAT
26246237 TCGAGTTAT
1 TCGAGTTAT
26246246 TCGA
1 TCGA
26246250 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:26248890 original size:14 final size:11
Alignment explanation
Indices: 26248855--26248904 Score: 55
Period size: 11 Copynumber: 4.2 Consensus size: 11
26248845 AGAAGAAAAG
26248855 GAAATAAATAA
1 GAAATAAATAA
26248866 GAAATAAATAA
1 GAAATAAATAA
26248877 GAATAATAAAATAAA
1 G-A-AAT-AAAT-AA
*
26248892 TAAATAAATAA
1 GAAATAAATAA
26248903 GA
1 GA
26248905 CTAATTAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
11 15 0.45
12 5 0.15
13 6 0.18
14 5 0.15
15 2 0.06
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.20
Consensus pattern (11 bp):
GAAATAAATAA
Found at i:26260772 original size:17 final size:17
Alignment explanation
Indices: 26260752--26260786 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
26260742 AATAAATATA
* *
26260752 TTTATTTTTTAAATTTT
1 TTTAATTTTAAAATTTT
26260769 TTTAATTTTAAAATTTT
1 TTTAATTTTAAAATTTT
26260786 T
1 T
26260787 AAAAATATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTAATTTTAAAATTTT
Found at i:26260808 original size:12 final size:12
Alignment explanation
Indices: 26260780--26260832 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
26260770 TTAATTTTAA
26260780 AATTTTTAAAA-
1 AATTTTTAAAAT
26260791 ATATTTTTAAAAT
1 A-ATTTTTAAAAT
*
26260804 AATTTTT---TT
1 AATTTTTAAAAT
26260813 AATTTTTAAAAT
1 AATTTTTAAAAT
26260825 AAATTTTT
1 -AATTTTT
26260833 GGTGTTTATT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
9 8 0.24
11 1 0.03
12 17 0.50
13 8 0.24
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
AATTTTTAAAAT
Found at i:26260817 original size:21 final size:21
Alignment explanation
Indices: 26260793--26260832 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
26260783 TTTTAAAAAT
*
26260793 ATTTTTAAAATAATTTTTTTA
1 ATTTTTAAAATAAATTTTTTA
26260814 ATTTTTAAAATAAATTTTT
1 ATTTTTAAAATAAATTTTT
26260833 GGTGTTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTTTTAAAATAAATTTTTTA
Found at i:26261378 original size:14 final size:15
Alignment explanation
Indices: 26261339--26261380 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
26261329 TTTTAACATA
*
26261339 ATTATTATTAAATAT
1 ATTATAATTAAATAT
26261354 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
26261368 A-TATAATTTAATA
1 ATTATAATTAAATA
26261381 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:26263745 original size:13 final size:13
Alignment explanation
Indices: 26263727--26263753 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26263717 AGCTTTTAAG
26263727 CAATGGTAATATC
1 CAATGGTAATATC
26263740 CAATGGTAATATC
1 CAATGGTAATATC
26263753 C
1 C
26263754 TTGAACAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.30
Consensus pattern (13 bp):
CAATGGTAATATC
Found at i:26268055 original size:47 final size:47
Alignment explanation
Indices: 26267892--26268214 Score: 425
Period size: 47 Copynumber: 6.6 Consensus size: 47
26267882 TAGGACGCCA
* * *
26267892 ATGCCATATCCCAGATATGGTCTTACA-TGGGA-TCTCATATCGGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACT--GACTCTCATATC-GAGCCG
* *
26267940 ATGCCATGTCCCAGACATGGTCTTACACTGGCACTCAAAACTAATCTCGAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-G-ACT-----CTCATATCGAGCCG
26267994 ATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATCGAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATCGAGCCG
*
26268041 ATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATTGAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATCGAGCCG
*
26268088 ATGCCATGTCCCAGACATGGTCTTACACTGACCCTCATATCGAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATCGAGCCG
* * *
26268135 ATGCCATGTCCCAGACATGGTCTTACACTGACTCTCCTCTGTCCGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTCT-C-ATAT-CGAGCCG
26268185 ATGCCATGTCCCAGACATGGTCTTACACTG
1 ATGCCATGTCCCAGACATGGTCTTACACTG
26268215 GCACACTCAC
Statistics
Matches: 250, Mismatches: 14, Indels: 20
0.88 0.05 0.07
Matches are distributed among these distances:
47 137 0.55
48 28 0.11
49 4 0.02
50 37 0.15
52 3 0.01
53 1 0.00
54 34 0.14
55 6 0.02
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATCGAGCCG
Found at i:26270560 original size:20 final size:20
Alignment explanation
Indices: 26270537--26270577 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
26270527 AAATTTGTTG
26270537 ATTTTTTAAATGTT-TTTTTT
1 ATTTTTTAAA-GTTATTTTTT
*
26270557 ATTTTTTTAAGTTATTTTTT
1 ATTTTTTAAAGTTATTTTTT
26270577 A
1 A
26270578 AAAAAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 3 0.16
20 16 0.84
ACGTcount: A:0.22, C:0.00, G:0.05, T:0.73
Consensus pattern (20 bp):
ATTTTTTAAAGTTATTTTTT
Found at i:26274519 original size:15 final size:15
Alignment explanation
Indices: 26274473--26274521 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 15
26274463 AAAATATATA
*
26274473 TTTATATTATTTTTAA
1 TTTATA-TATTTTTAT
26274489 TTTA-ATATTTAGTTAT
1 TTTATATATTT--TTAT
26274505 TTTATATATTTTTAT
1 TTTATATATTTTTAT
26274520 TT
1 TT
26274522 GTTAAAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
14 5 0.17
15 7 0.24
16 11 0.38
17 6 0.21
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (15 bp):
TTTATATATTTTTAT
Found at i:26294554 original size:4 final size:4
Alignment explanation
Indices: 26294545--26294571 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
26294535 NNNNNNGTAA
26294545 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
26294572 AATAAAACTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:26303510 original size:11 final size:11
Alignment explanation
Indices: 26303446--26303521 Score: 50
Period size: 11 Copynumber: 7.0 Consensus size: 11
26303436 AAACAAAATA
26303446 AAAG-AAAAAG
1 AAAGAAAAAAG
*
26303456 AAATAATAAAAG
1 AAAGAA-AAAAG
* * *
26303468 AAACAAGATAG
1 AAAGAAAAAAG
*
26303479 AAACG-AAACAG
1 AAA-GAAAAAAG
*
26303490 AAAGGAAAAAG
1 AAAGAAAAAAG
26303501 AAAGAAAAAAG
1 AAAGAAAAAAG
*
26303512 GAA-AAAAAAG
1 AAAGAAAAAAG
26303522 GAGAAAGGGC
Statistics
Matches: 52, Mismatches: 10, Indels: 8
0.74 0.14 0.11
Matches are distributed among these distances:
10 11 0.21
11 31 0.60
12 10 0.19
ACGTcount: A:0.74, C:0.04, G:0.18, T:0.04
Consensus pattern (11 bp):
AAAGAAAAAAG
Found at i:26310419 original size:11 final size:10
Alignment explanation
Indices: 26310361--26310434 Score: 51
Period size: 11 Copynumber: 6.8 Consensus size: 10
26310351 AAACAAAATA
26310361 AAAGAAAAAG
1 AAAGAAAAAG
*
26310371 AAATAGTAAAAG
1 -AA-AGAAAAAG
* *
26310383 AAACAAGATAG
1 AAAGAA-AAAG
26310394 AAACGAAACAA-
1 AAA-GAAA-AAG
26310405 AAAGGAAAAAG
1 AAA-GAAAAAG
26310416 AAAGAAAAAGG
1 AAAGAAAAA-G
26310427 AAAGAAAA
1 AAAGAAAA
26310435 GGAGAAAGGG
Statistics
Matches: 50, Mismatches: 7, Indels: 12
0.72 0.10 0.17
Matches are distributed among these distances:
10 10 0.20
11 30 0.60
12 10 0.20
ACGTcount: A:0.73, C:0.04, G:0.19, T:0.04
Consensus pattern (10 bp):
AAAGAAAAAG
Found at i:26311133 original size:24 final size:24
Alignment explanation
Indices: 26311106--26311152 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
26311096 ATTGAAATAG
26311106 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
26311130 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
26311153 GGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:26311150 original size:15 final size:15
Alignment explanation
Indices: 26311130--26311181 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
26311120 TGATGAATTT
26311130 ATTGAATTTATATTG
1 ATTGAATTTATATTG
*
26311145 ATTGAATTGGTATATATAT
1 ATTGAATT--TATAT-T-G
*
26311164 ATTGAATATATATTG
1 ATTGAATTTATATTG
26311179 ATT
1 ATT
26311182 ATTTGAATTG
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 11 0.37
16 1 0.03
17 10 0.33
18 1 0.03
19 7 0.23
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:26311434 original size:40 final size:40
Alignment explanation
Indices: 26311313--26311452 Score: 151
Period size: 40 Copynumber: 3.5 Consensus size: 40
26311303 TACTTCGATT
* *
26311313 CGATGAGACACTGGGTGTCAAATTATTATTTCGGATATATT
1 CGATGAGACACTGGGTGTCAAATTATTACTTCGGAT-TATC
* * * * * *
26311354 CGATGAGGCACTAGGTG-CCAA-T-TTACTTTGGTTTAGC
1 CGATGAGACACTGGGTGTCAAATTATTACTTCGGATTATC
*
26311391 CGATGAGACACTGGGTGTCAAATTATTACTTCGAATTATC
1 CGATGAGACACTGGGTGTCAAATTATTACTTCGGATTATC
* *
26311431 CGATGAGGCACTGGGTGCCAAA
1 CGATGAGACACTGGGTGTCAAA
26311453 CTGGTGTGTT
Statistics
Matches: 79, Mismatches: 17, Indels: 7
0.77 0.17 0.07
Matches are distributed among these distances:
37 17 0.22
38 11 0.14
39 2 0.03
40 34 0.43
41 15 0.19
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAAATTATTACTTCGGATTATC
Found at i:26317277 original size:3 final size:3
Alignment explanation
Indices: 26317262--26317293 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
26317252 TGGTTATAAT
*
26317262 TTA TTA TTG TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
26317294 TGTATGTATG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:26342814 original size:16 final size:16
Alignment explanation
Indices: 26342795--26342833 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
26342785 TCCTACGTTA
26342795 GGTTTTTGGATTTTAG
1 GGTTTTTGGATTTTAG
** *
26342811 GGTTTAGGGTTTTTAG
1 GGTTTTTGGATTTTAG
26342827 GGTTTTT
1 GGTTTTT
26342834 AGGGTTTTGG
Statistics
Matches: 18, Mismatches: 5, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.10, C:0.00, G:0.33, T:0.56
Consensus pattern (16 bp):
GGTTTTTGGATTTTAG
Found at i:26342827 original size:9 final size:9
Alignment explanation
Indices: 26342805--26342841 Score: 60
Period size: 9 Copynumber: 4.3 Consensus size: 9
26342795 GGTTTTTGGA
26342805 TTTTAGGG-
1 TTTTAGGGT
26342813 -TTTAGGGT
1 TTTTAGGGT
26342821 TTTTAGGGT
1 TTTTAGGGT
26342830 TTTTAGGGT
1 TTTTAGGGT
26342839 TTT
1 TTT
26342842 GGAGAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 7 0.26
9 20 0.74
ACGTcount: A:0.11, C:0.00, G:0.32, T:0.57
Consensus pattern (9 bp):
TTTTAGGGT
Found at i:26342841 original size:8 final size:8
Alignment explanation
Indices: 26342795--26342841 Score: 51
Period size: 9 Copynumber: 5.8 Consensus size: 8
26342785 TCCTACGTTA
*
26342795 GGTTTTTG
1 GGTTTTAG
*
26342803 GATTTTAG
1 GGTTTTAG
26342811 GG-TTTAG
1 GGTTTTAG
26342818 GGTTTTTAG
1 GG-TTTTAG
26342827 GGTTTTTAG
1 GG-TTTTAG
26342836 GGTTTT
1 GGTTTT
26342842 GGAGAAAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
7 7 0.21
8 11 0.32
9 16 0.47
ACGTcount: A:0.11, C:0.00, G:0.34, T:0.55
Consensus pattern (8 bp):
GGTTTTAG
Found at i:26343083 original size:125 final size:124
Alignment explanation
Indices: 26342881--26343147 Score: 471
Period size: 125 Copynumber: 2.1 Consensus size: 124
26342871 CCACATGTAT
*
26342881 GCACTTTTGCTACAGTAGGTCCTGAAAAAATAATTTTGACTTGACGTTTCTGAGCAAATAGTATA
1 GCACTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATA
* * *
26342946 AAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTGTGAAGTCGTGCCCTCGTGGAC
66 AAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATGAAATCGCGCCCTCGTGGAC
* *
26343005 GCTCTTTTGCTACAGTAGGTCCTGGAAGAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTAT
1 GCACTTTTGCTACAGTAGGTCCT-GAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTAT
26343070 AAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATGAAATCGCGCCCTCGTGGAC
65 AAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATGAAATCGCGCCCTCGTGGAC
26343130 GCACTTTTGCTACAGTAG
1 GCACTTTTGCTACAGTAG
26343148 CATGTTTGGG
Statistics
Matches: 135, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
124 22 0.16
125 113 0.84
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.31
Consensus pattern (124 bp):
GCACTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATA
AAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATTTATGAAATCGCGCCCTCGTGGAC
Found at i:26346265 original size:21 final size:21
Alignment explanation
Indices: 26346225--26348350 Score: 2738
Period size: 21 Copynumber: 100.6 Consensus size: 21
26346215 AAAACCTTAA
26346225 GGTTTTTAAGTTAAGGGTTTAG
1 GGTTTTTAAGTTAA-GGTTTAG
* *
26346247 GATTTTTAAGTTAAAGTTTTAG
1 GGTTTTTAAGTT-AAGGTTTAG
*
26346269 GGTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* ** *
26346290 AGTTTTTACTTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26346311 GGTTTTTAAGTTAAGGGTTAA
1 GGTTTTTAAGTTAAGGTTTAG
*
26346332 GGTTTTTAAGTTAAGGGTTTAT
1 GGTTTTTAAGTTAA-GGTTTAG
26346354 GGTTTTTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26346375 GGTTATTAACTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26346396 GGTTATTAAGTTAAAGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26346417 GGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26346438 GGTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26346459 GGTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26346480 TGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26346501 GGTTTTTTAGTTAAGG-TTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26346521 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26346542 GGTTTTTAATTTAAAGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26346563 GGTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26346584 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26346605 GGTTTTTAAGTTAAGGGTTTAT
1 GGTTTTTAAGTTAA-GGTTTAG
*
26346627 GATTTTTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26346648 GATTTTTAAGTTAAGGATTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26346669 GGTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26346690 GGTTTCTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26346711 GGTTATTAAGTTAAAGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26346732 GCTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26346753 TGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
26346774 GGTTTTTAAGTTAA-GTGTTAG
1 GGTTTTTAAGTTAAGGT-TTAG
* * *
26346795 TGTTTTTAAGTTATGGGTTTAT
1 GGTTTTTAAGTTA-AGGTTTAG
*
26346817 GGTTTTTAAGTTAAAGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26346838 GGTTATTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26346859 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26346880 GGTTTTTAAGTTAATGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26346901 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
26346922 GGTTTTTAAGTTAA-GTGTTAG
1 GGTTTTTAAGTTAAGGT-TTAG
* *
26346943 GGTTATTAAGTTAAGGGTTTAT
1 GGTTTTTAAGTTAA-GGTTTAG
26346965 GGTTTTTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26346986 GGTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26347007 GGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26347028 GGTTTTTAAGTTAATGGTTTAT
1 GGTTTTTAAGTTAA-GGTTTAG
*
26347050 GGTTTTTAAGTTAAGCTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26347071 GGTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* * *
26347092 TGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26347113 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26347134 GGTTTTTAATTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26347155 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* * *
26347176 GATTTTTAAGCTAATGGTTTAT
1 GGTTTTTAAGTTAA-GGTTTAG
*
26347198 GGTTTTTAAGTTAAGGTTTAC
1 GGTTTTTAAGTTAAGGTTTAG
*
26347219 GGTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26347240 GATTTTTAAGTTAAGGATTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26347261 GGTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26347282 GGTTTCTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26347303 GGTTATTAAGTTAAAGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* * *
26347324 AGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26347345 GGTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26347366 GGTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26347387 TGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
26347408 GGTTTTTAAGTTAA-GTGTTAG
1 GGTTTTTAAGTTAAGGT-TTAG
* * *
26347429 TGTTTTTAAGTTATGGGTTTAT
1 GGTTTTTAAGTTA-AGGTTTAG
*
26347451 GGTTTTTAAGTTAAAGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26347472 GGTTATTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26347493 GTTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26347514 GGTTTTTAAGTTAATGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26347535 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
26347556 GGTTTTTAAGTTAA-GTGTTAG
1 GGTTTTTAAGTTAAGGT-TTAG
*
26347577 GGTTTTTAAGTTAAGGGTTTAT
1 GGTTTTTAAGTTAA-GGTTTAG
26347599 GGTTTTTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26347620 GGTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26347641 GGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26347662 GATTTTTAAGTGT-AGGGTTAG
1 GGTTTTTAAGT-TAAGGTTTAG
*
26347683 GGTTTTTAAGTTAAGGGTTTAT
1 GGTTTTTAAGTTAA-GGTTTAG
* * *
26347705 GATTTTTAAGTTCA-GTTTAT
1 GGTTTTTAAGTTAAGGTTTAG
*
26347725 GGTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26347746 GGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26347767 GGTTTTTTAAGTTAATGGTTTAT
1 GG-TTTTTAAGTTAA-GGTTTAG
26347790 GGTTTTTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26347811 GGTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26347832 GGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26347853 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26347874 GGGTTTTAATTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26347895 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26347916 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* * *
26347937 GATTTTTAAGCTAATGGTTTAT
1 GGTTTTTAAGTTAA-GGTTTAG
*
26347959 GGTTTTTAAGTTAAGGTTTAT
1 GGTTTTTAAGTTAAGGTTTAG
*
26347980 GGTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26348001 GGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26348022 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26348043 GGTTTTTAATTTAAGGCTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26348064 GGTTTTTAATTTAAGGTCTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26348085 GGTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26348106 GGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26348127 GGTTTTTAAGTGTAGGGTTT-G
1 GGTTTTTAAGT-TAAGGTTTAG
*
26348148 GGTTTTTAAGTTAAGGGTTTAT
1 GGTTTTTAAGTTAA-GGTTTAG
26348170 GGTTTTTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26348191 GGTTATTAAGTTAAGATTTAG
1 GGTTTTTAAGTTAAGGTTTAG
* **
26348212 GGTTTTTAATTTAAGGGGTAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26348233 GGTTTTTAAGTTAAGGGTTAA
1 GGTTTTTAAGTTAAGGTTTAG
*
26348254 GGTTTTTAAGTTAAGGTTCAG
1 GGTTTTTAAGTTAAGGTTTAG
* *
26348275 GGTTATTAAGTTAAGGTTTAT
1 GGTTTTTAAGTTAAGGTTTAG
* *
26348296 GGTTTTTAATTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
*
26348317 GGTTTTTAAGTTAAGGGTTAG
1 GGTTTTTAAGTTAAGGTTTAG
26348338 GGTTTTTAAGTTA
1 GGTTTTTAAGTTA
26348351 TNNNNNNNNN
Statistics
Matches: 1836, Mismatches: 240, Indels: 57
0.86 0.11 0.03
Matches are distributed among these distances:
20 43 0.02
21 1535 0.84
22 241 0.13
23 17 0.01
ACGTcount: A:0.26, C:0.01, G:0.27, T:0.46
Consensus pattern (21 bp):
GGTTTTTAAGTTAAGGTTTAG
Found at i:26346459 original size:148 final size:147
Alignment explanation
Indices: 26346225--26348350 Score: 2729
Period size: 148 Copynumber: 14.4 Consensus size: 147
26346215 AAAACCTTAA
* * *
26346225 GGTTTTTAAGTTAAGGGTTTAGGATTTTTAAGTTAAAGTTTTAGGGTTATTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAA-GGTTTAGGGTTTTTAAGTT-AAGGTTTAGGGTTTTTAAGTTAAGGTTTAG
* ** * * *
26346290 AGTTTTTACTTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAAGGTTTTTAAGTTAAGGGTTTATG
64 GGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAA-GGTTTAGG
26346355 GTTTTTAAGTTAAGGTTTAG
128 GTTTTTAAGTTAAGGTTTAG
* * * * * *
26346375 GGTTATTAACTTAAGGTTTAGGGTTATTAAGTTAAAGTTTAGGGTTTTTAATTTAAGGGTTAGGG
1 GGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGG
* * * * *
26346440 TTATTAAGTTAAGGTTTAGGGTTATTAAGTTAAGGTTTAGTGTTTTTAAGTTAAGGGTTAGGGTT
66 TTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGTTTAGGGTT
*
26346505 TTTTAGTTAAGG-TTAG
131 TTTAAGTTAAGGTTTAG
* * * *
26346521 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAAGTTTAGGGTTATTAAGTTAAGGTTTAGGG
1 GGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGG
* * * *
26346586 TTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTATGATTTTTAAGTTAAGGTTTAGGAT
66 TTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGTTTAGGGT
*
26346651 TTTTAAGTTAAGGATTAG
130 TTTTAAGTTAAGGTTTAG
* * * * *
26346669 GGTTATTAAGTTAAGGTTTAGGGTTTCTAAGTTAAGGTTTAGGGTTATTAAGTTAAAGTTTAGGC
1 GGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGG
* * *
26346734 TTATTAAGTTAAGGTTTAGTGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAA-GTGTTAGTGT
66 TTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGT-TTAGGGT
* *
26346798 TTTTAAGTTATGGGTTTAT
130 TTTTAAGTTA-AGGTTTAG
* * * *
26346817 GGTTTTTAAGTTAAAGTTTAGGGTTATTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGG
1 GGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGG
*
26346882 TTTTTAAGTTAATGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAA-GTGTTAGGGT
66 TTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGT-TTAGGGT
* *
26346946 TATTAAGTTAAGGGTTTAT
130 TTTTAAGTTAA-GGTTTAG
* * *
26346965 GGTTTTTAAGTTAAGGTTTAGGGTTATTAAGTTAAGGTTTAGGGTTTTTAATTTAAGGGTTAGGG
1 GGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGG
* ** * *
26347030 TTTTTAAGTTAATGGTTTATGGTTTTTAAGTTAAGCTTTAGGGTTATTAAGTTAAGGTTTAGTGT
66 TTTTTAAGTTAA-GGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGTTTAGGGT
* *
26347095 TTTTAATTTAAGGGTTAG
130 TTTTAAGTTAAGGTTTAG
* * * *
26347113 GGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGTTTAGGGTTTTTAAGTTAAGGGTTAGGA
1 GGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGG
* * * * * *
26347178 TTTTTAAGCTAATGGTTTATGGTTTTTAAGTTAAGGTTTACGGTTATTAAGTTAAGGTTTAGGAT
66 TTTTTAAGTTAA-GGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGTTTAGGGT
*
26347243 TTTTAAGTTAAGGATTAG
130 TTTTAAGTTAAGGTTTAG
* * * * *
26347261 GGTTATTAAGTTAAGGTTTAGGGTTTCTAAGTTAAGGTTTAGGGTTATTAAGTTAAAGTTTAGAG
1 GGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGG
* * * * * *
26347326 TTTTTAATTTAAGGGTTAGGGTTATTAAGTTAAGGTTTAGGGTTATTAAGTTAAGGTTTAGTGTT
66 TTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGTTTAGGGTT
*
26347391 TTTAAGTTAAGGGTTAG
131 TTTAAGTTAAGGTTTAG
* * * *
26347408 GGTTTTTAAGTTAA-GTGTTAGTGTTTTTAAGTTATGGGTTTATGGTTTTTAAGTTAAAGTTTAG
1 GGTTTTTAAGTTAAGGT-TTAGGGTTTTTAAGTTA-AGGTTTAGGGTTTTTAAGTTAAGGTTTAG
* * * *
26347472 GGTTATTAAGTTAAGGGTTAGGTTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAATGTTTAGGG
64 GGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGTTTAGGG
*
26347537 TTTTTAAGTTAAGGGTTAG
129 TTTTTAAGTTAAGGTTTAG
*
26347556 GGTTTTTAAGTTAA-GTGTTAGGGTTTTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAGGTTTAG
1 GGTTTTTAAGTTAAGGT-TTAGGGTTTTTAAGTTAA-GGTTTAGGGTTTTTAAGTTAAGGTTTAG
* * * *
26347620 GGTTATTAAGTTAAGGTTTAGGGTTTTTAATTTAAGGGTTAGGATTTTTAAGTGT-AGGGTTAGG
64 GGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGT-TAAGGTTTAGG
*
26347684 GTTTTTAAGTTAAGGGTTTAT
128 GTTTTTAAGTTAA-GGTTTAG
* * * * * *
26347705 GATTTTTAAGTTCA-GTTTATGGTTATTAAGTTAAGGTTTAGGGTTTTTAATTTAAGGGTTAGGG
1 GGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGG
* * *
26347769 TTTTTTAAGTTAATGGTTTATGGTTTTTAAGTTAAGGTTTAGGGTTATTAAGTTAAGGTTTAGGG
66 -TTTTTAAGTTAA-GGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGTTTAGGG
* *
26347834 TTTTTAATTTAAGGGTTAG
129 TTTTTAAGTTAAGGTTTAG
* * * *
26347853 GGTTTTTAAGTTAAGGGTTAGGGGTTTTAATTTAAGGTTTAGGGTTTTTAAGTTAAGGGTTAGGG
1 GGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGG
* * * * * *
26347918 TTTTTAAGTTAAGGGTTAGGATTTTTAAGCTAATGGTTTATGGTTTTTAAGTTAAGGTTTATGGT
66 TTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAA-GGGTTAGGGTTTTTAAGTTAAGGTTTAGGGT
*
26347983 TATTAAGTTAAGGTTTAG
130 TTTTAAGTTAAGGTTTAG
* * * * *
26348001 GGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAATTTAAGGCTTAGGG
1 GGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGG
* * * * * *
26348066 TTTTTAATTTAAGGTCTAGGGTTATTAAGTTAAGGTTTAGGGTTTTTAATTTAAGGGTTAGGGTT
66 TTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGTTTAGGGTT
*
26348131 TTTAAGTGTAGGGTTT-G
131 TTTAAGT-TAAGGTTTAG
* * *
26348148 GGTTTTTAAGTTAAGGGTTTATGGTTTTTAAGTTAAGGTTTAGGGTTATTAAGTTAAGATTTAGG
1 GGTTTTTAAGTTAA-GGTTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGG
* ** * *
26348213 GTTTTTAATTTAAGGGGTAGGGTTTTTAAGTTAAGGGTTAAGGTTTTTAAGTTAAGGTTCAGGGT
65 GTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGTTTAGGGT
* *
26348278 TATTAAGTTAAGGTTTAT
130 TTTTAAGTTAAGGTTTAG
* * *
26348296 GGTTTTTAATTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTA
1 GGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTA
26348351 TNNNNNNNNN
Statistics
Matches: 1739, Mismatches: 217, Indels: 43
0.87 0.11 0.02
Matches are distributed among these distances:
146 97 0.06
147 313 0.18
148 1128 0.65
149 187 0.11
150 14 0.01
ACGTcount: A:0.26, C:0.01, G:0.27, T:0.46
Consensus pattern (147 bp):
GGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGG
TTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGTTTAGGGTT
TTTAAGTTAAGGTTTAG
Found at i:26349943 original size:21 final size:21
Alignment explanation
Indices: 26349914--26350352 Score: 549
Period size: 21 Copynumber: 20.9 Consensus size: 21
26349904 NNNNNNNNNN
26349914 AAGTTAAGGTTTAGGGTTTTT
1 AAGTTAAGGTTTAGGGTTTTT
* * *
26349935 AATTTAAGGGTTAGGATTTTT
1 AAGTTAAGGTTTAGGGTTTTT
*
26349956 AAGTTAAGGGTTAGGGTTTTT
1 AAGTTAAGGTTTAGGGTTTTT
*
26349977 AATTTAAGGTTTAGGG-TTTT
1 AAGTTAAGGTTTAGGGTTTTT
* **
26349997 AAGTTAAGGGTTAGTATTTTT
1 AAGTTAAGGTTTAGGGTTTTT
* *
26350018 AAGTTATGGGTTTATGGTTTTT
1 AAGTTA-AGGTTTAGGGTTTTT
*
26350040 AAGTTAAGGTTTACGGTTTTT
1 AAGTTAAGGTTTAGGGTTTTT
26350061 AAGTTAAGGTTTAGGGTTTTT
1 AAGTTAAGGTTTAGGGTTTTT
* * *
26350082 AATTTAAGGGTTATGGTTTTT
1 AAGTTAAGGTTTAGGGTTTTT
*
26350103 AAGTTAAGGGTTAGGGTTTTT
1 AAGTTAAGGTTTAGGGTTTTT
* *
26350124 AATTTATGGTTTAGGGTTTTT
1 AAGTTAAGGTTTAGGGTTTTT
* * *
26350145 AATTTAAGGTCTAGGGTTATT
1 AAGTTAAGGTTTAGGGTTTTT
26350166 AAGTTAAGGTTTAGGGTTTTT
1 AAGTTAAGGTTTAGGGTTTTT
* *
26350187 AATTTAAGGGTTAGGGTTTTT
1 AAGTTAAGGTTTAGGGTTTTT
*
26350208 AAGTGTAGGGTTT-GGGTTTTT
1 AAGT-TAAGGTTTAGGGTTTTT
*
26350229 AAGTTAAGGGTTTATGGTTTTT
1 AAGTTAA-GGTTTAGGGTTTTT
*
26350251 AAGTTAAGGTTTAGGGTTATT
1 AAGTTAAGGTTTAGGGTTTTT
*
26350272 AAGTTAAGATTTAGGGTTTTT
1 AAGTTAAGGTTTAGGGTTTTT
* **
26350293 AATTTAAGGGGTAGGGTTTTT
1 AAGTTAAGGTTTAGGGTTTTT
* *
26350314 AAGTTAAGGGTTAAGGTTTTT
1 AAGTTAAGGTTTAGGGTTTTT
*
26350335 AAGTTAAGGTTCAGGGTT
1 AAGTTAAGGTTTAGGGTT
26350353 ATTNNNNNNN
Statistics
Matches: 359, Mismatches: 54, Indels: 10
0.85 0.13 0.02
Matches are distributed among these distances:
20 18 0.05
21 305 0.85
22 36 0.10
ACGTcount: A:0.24, C:0.01, G:0.28, T:0.47
Consensus pattern (21 bp):
AAGTTAAGGTTTAGGGTTTTT
Found at i:26351672 original size:21 final size:21
Alignment explanation
Indices: 26351646--26352138 Score: 571
Period size: 21 Copynumber: 23.2 Consensus size: 21
26351636 NNNNNNNNNN
26351646 TTAAGGTTTAGGGTTTTTAAG
1 TTAAGGTTTAGGGTTTTTAAG
* *
26351667 TTAAGGGTTAGGGGTTTTAAG
1 TTAAGGTTTAGGGTTTTTAAG
***
26351688 TTAAGGGTTTATAATTTTTAAG
1 TTAA-GGTTTAGGGTTTTTAAG
*
26351710 TTAAGGTTTAGGGTTATTAAG
1 TTAAGGTTTAGGGTTTTTAAG
* * *
26351731 TTAAGATTTAAGG-TTTTAAT
1 TTAAGGTTTAGGGTTTTTAAG
*
26351751 TTAAGGGTTTAGGG--TTTAGGG
1 TTAA-GGTTTAGGGTTTTTA-AG
*
26351772 TTTATGGTTTAGGGTTTTTAAG
1 -TTAAGGTTTAGGGTTTTTAAG
*
26351794 TTAATGGTTTACGGTTTTTAAG
1 TTAA-GGTTTAGGGTTTTTAAG
*
26351816 TTAAGGTTTAGGGTTATTAAG
1 TTAAGGTTTAGGGTTTTTAAG
*
26351837 TTAAGGTTTAGGGTTTTTAAT
1 TTAAGGTTTAGGGTTTTTAAG
* *
26351858 TTAAGGGTTAGGGTTTTTATG
1 TTAAGGTTTAGGGTTTTTAAG
*
26351879 TTAAGGGTTAGGGTTTTTAAG
1 TTAAGGTTTAGGGTTTTTAAG
* * *
26351900 TTATGGGTTTATGATTTTTAAG
1 TTA-AGGTTTAGGGTTTTTAAG
* *
26351922 TTAAAGTTTAAGGTTTTTAAG
1 TTAAGGTTTAGGGTTTTTAAG
* *
26351943 TTAAGGGTTAGGGTTTTTAAT
1 TTAAGGTTTAGGGTTTTTAAG
* *
26351964 TTAAAGTTTAGGGTTATTAAG
1 TTAAGGTTTAGGGTTTTTAAG
26351985 TTAAGGTTTAGGGTTTTTAAG
1 TTAAGGTTTAGGGTTTTTAAG
* *
26352006 TTAAGGGTTAGGGTTTTTAAT
1 TTAAGGTTTAGGGTTTTTAAG
*
26352027 TTAAGGGTTAGGGTTTTTAAG
1 TTAAGGTTTAGGGTTTTTAAG
*
26352048 TGTAGGGTTT-GGGTTTTTAAG
1 T-TAAGGTTTAGGGTTTTTAAG
*
26352069 TTAAGGGTTTATGGTTTTTAAG
1 TTAA-GGTTTAGGGTTTTTAAG
*
26352091 TTAAGGTTTAGGGTTATTAAG
1 TTAAGGTTTAGGGTTTTTAAG
* *
26352112 TCTAAGATTTAGGGTTTTTAAT
1 T-TAAGGTTTAGGGTTTTTAAG
26352134 TTAAG
1 TTAAG
26352139 NNNNNNNNNN
Statistics
Matches: 399, Mismatches: 61, Indels: 24
0.82 0.13 0.05
Matches are distributed among these distances:
20 15 0.04
21 285 0.71
22 95 0.24
23 4 0.01
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (21 bp):
TTAAGGTTTAGGGTTTTTAAG
Found at i:26351766 original size:7 final size:7
Alignment explanation
Indices: 26351754--26351788 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
26351744 TTTTAATTTA
26351754 AGGGTTT
1 AGGGTTT
26351761 AGGGTTT
1 AGGGTTT
26351768 AGGGTTT
1 AGGGTTT
*
26351775 ATGGTTT
1 AGGGTTT
26351782 AGGGTTT
1 AGGGTTT
26351789 TTAAGTTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.14, C:0.00, G:0.40, T:0.46
Consensus pattern (7 bp):
AGGGTTT
Found at i:26351835 original size:106 final size:105
Alignment explanation
Indices: 26351646--26352138 Score: 575
Period size: 106 Copynumber: 4.6 Consensus size: 105
26351636 NNNNNNNNNN
* * ***
26351646 TTAA-GGTTTAGGGTTTTTAAGTTAAGGGTTAGGGGTTTTAAGTTAAGGGTTTATAATTTTTAAG
1 TTAAGGGTTTAGGG-TTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAA-GGTTTAGGGTTTTTAAG
* *
26351710 TTAAGGTTTAGGGTTATTAAGTTAAGATTTAAGG-TTTTAAT
64 TTAAGGTTTAGGGTTATTAAGTTAAGGTTTAGGGTTTTTAAT
* * *
26351751 TTAAGGGTTTAGGG-TTTAGGGTTTATGGTTTAGGGTTTTTAAGTTAATGGTTTACGGTTTTTAA
1 TTAAGGGTTTAGGGTTTTA-AG-TTAAGGTTTAGGGTTTTTAAGTTAA-GGTTTAGGGTTTTTAA
26351815 GTTAAGGTTTAGGGTTATTAAGTTAAGGTTTAGGGTTTTTAAT
63 GTTAAGGTTTAGGGTTATTAAGTTAAGGTTTAGGGTTTTTAAT
* * * * *
26351858 TTAAGGG-TTAGGGTTTTTATGTTAAGGGTTAGGGTTTTTAAGTTATGGGTTTATGATTTTTAAG
1 TTAAGGGTTTAGGG-TTTTAAGTTAAGGTTTAGGGTTTTTAAGTTA-AGGTTTAGGGTTTTTAAG
* * * *
26351922 TTAAAGTTTAAGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAT
64 TTAAGGTTTAGGGTTATTAAGTTAAGGTTTAGGGTTTTTAAT
* * *
26351964 TTAA-AGTTTAGGGTTATTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAATT
1 TTAAGGGTTTAGGGTT-TTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGT
* * * *
26352028 TAAGGGTTAGGGTTTTTAAGTGTAGGGTTT-GGGTTTTTAAG
65 TAAGGTTTAGGGTTATTAAGT-TAAGGTTTAGGGTTTTTAAT
* * * *
26352069 TTAAGGGTTTATGGTTTTTAAGTTAAGGTTTAGGGTTATTAAGTCTAAGATTTAGGGTTTTTAAT
1 TTAAGGGTTTA-GGGTTTTAAGTTAAGGTTTAGGGTTTTTAAGT-TAAGGTTTAGGGTTTTTAAG
26352134 TTAAG
64 TTAAG
26352139 NNNNNNNNNN
Statistics
Matches: 336, Mismatches: 39, Indels: 24
0.84 0.10 0.06
Matches are distributed among these distances:
104 4 0.01
105 54 0.16
106 232 0.69
107 42 0.12
108 4 0.01
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (105 bp):
TTAAGGGTTTAGGGTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTT
AAGGTTTAGGGTTATTAAGTTAAGGTTTAGGGTTTTTAAT
Found at i:26351873 original size:127 final size:126
Alignment explanation
Indices: 26351650--26352138 Score: 605
Period size: 127 Copynumber: 3.8 Consensus size: 126
26351640 NNNNNNTTAA
* * ***
26351650 GGTTTAGGGTTTTTAAGTTAAGGGTTAGGGGTTTTAAGTTAAGGGTTTATAATTTTTAAGTTAAG
1 GGTTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAG
* *
26351715 GTTTAGGGTTATTAAGTTAAGATTTAAGG-TTTTAATTTAAGGGTTTAGGGTTTAGGGTTTAT
66 GTTTAGGGTTATTAAGTTAAGATTTAGGGTTTTTAATTTAAGGG-TTAGGGTTTA-AGTTTAT
* *
26351777 GGTTTAGGGTTTTTAAGTTAATGGTTTACGGTTTTTAAGTTAA-GGTTTAGGGTTATTAAGTTAA
1 GGTTTAGGGTTTTTAAGTTAA-GGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAA
* * **
26351841 GGTTTAGGGTTTTTAATTTAAGGGTTAGGGTTTTT-ATGTTAAGGGTTAGGGTTTTTAAG-TTAT
65 GGTTTAGGGTTATTAAGTTAAGATTTAGGGTTTTTAAT-TTAAGGGTTAGGG--TTTAAGTTTAT
* * * * *
26351904 GGGTTTATGATTTTTAAGTTAAAGTTTAAGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAATTTAA
1 -GGTTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAA
* * * *
26351968 AGTTTAGGGTTATTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAA-TTTAA
65 GGTTTAGGGTTATTAAGTTAAGATTTAGGGTTTTTAATTTAAGGGTTAGGG--TTTAAGTTTAT
* * *
26352031 GGGTTAGGGTTTTTAAGTGTAGGGTTT-GGGTTTTTAAGTTAAGGGTTTATGGTTTTTAAGTTAA
1 GGTTTAGGGTTTTTAAGT-TAAGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAA
26352095 GGTTTAGGGTTATTAAGTCTAAGATTTAGGGTTTTTAATTTAAG
65 GGTTTAGGGTTATTAAGT-TAAGATTTAGGGTTTTTAATTTAAG
26352139 NNNNNNNNNN
Statistics
Matches: 314, Mismatches: 36, Indels: 23
0.84 0.10 0.06
Matches are distributed among these distances:
126 32 0.10
127 203 0.65
128 75 0.24
129 4 0.01
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (126 bp):
GGTTTAGGGTTTTTAAGTTAAGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTAAG
GTTTAGGGTTATTAAGTTAAGATTTAGGGTTTTTAATTTAAGGGTTAGGGTTTAAGTTTAT
Found at i:26352267 original size:21 final size:21
Alignment explanation
Indices: 26352239--26352857 Score: 636
Period size: 21 Copynumber: 29.3 Consensus size: 21
26352229 NNNNNNNNNN
26352239 AGGGTTTTTAAGTTAAGGGTT
1 AGGGTTTTTAAGTTAAGGGTT
* *
26352260 AAGGTTTTTAAGTTAAGGTTT
1 AGGGTTTTTAAGTTAAGGGTT
* * *
26352281 ATGGTTATTAAGTTAAGGTTT
1 AGGGTTTTTAAGTTAAGGGTT
*
26352302 AGGGTTTTTAATTTAAGGGTT
1 AGGGTTTTTAAGTTAAGGGTT
26352323 AGGGTTTTTAAGTTAAGGGTT
1 AGGGTTTTTAAGTTAAGGGTT
*
26352344 AGGG-TTTTAAGTTATGGGTTT
1 AGGGTTTTTAAGTTAAGGG-TT
* * *
26352365 ATGGTTTTTAAGTTAAAGTTT
1 AGGGTTTTTAAGTTAAGGGTT
* * * *
26352386 AAGGTTTTTAATTTAACGTTT
1 AGGGTTTTTAAGTTAAGGGTT
26352407 AGGGTTTTTAAGTTAA-GGTAT
1 AGGGTTTTTAAGTTAAGGGT-T
* *
26352428 ATGGTTTTTAATTTAAGGGTT
1 AGGGTTTTTAAGTTAAGGGTT
26352449 AGGGTTTTTAAGTTAAGGGTT
1 AGGGTTTTTAAGTTAAGGGTT
26352470 AGGGTTTTTAAGTTAAGGGTT
1 AGGGTTTTTAAGTTAAGGGTT
* *
26352491 TGTGGTTTTTAAGTTAAGGTTT
1 AG-GGTTTTTAAGTTAAGGGTT
* *
26352513 AGGGTTATTAAGTTAAGGTTT
1 AGGGTTTTTAAGTTAAGGGTT
*
26352534 AGGGTTTTTAATTTAAGGGTT
1 AGGGTTTTTAAGTTAAGGGTT
*
26352555 AAGGTTTTTAAGTTAAGGGTTT
1 AGGGTTTTTAAGTTAAGGG-TT
*** *
26352577 ATTATTTTTTAGTT-AGGGTTT
1 AGGGTTTTTAAGTTAAGGG-TT
* * *
26352598 AGGGTTTTTAGGTTAATGTTT
1 AGGGTTTTTAAGTTAAGGGTT
*
26352619 AGGGTTTTTAATTTAAGGGTT
1 AGGGTTTTTAAGTTAAGGGTT
*
26352640 AGAGTTTTTAAGTTAAGGGTT
1 AGGGTTTTTAAGTTAAGGGTT
* *
26352661 AGGGTTTTTAATTTAAGGTTT
1 AGGGTTTTTAAGTTAAGGGTT
*
26352682 AGGGTTTTTAATTTAAGGGTT
1 AGGGTTTTTAAGTTAAGGGTT
* * *
26352703 AGAGTTTTTAAGTTCAGGCTT
1 AGGGTTTTTAAGTTAAGGGTT
* * * *
26352724 ACCGATTTTTAAGTCAAGGCTT
1 A-GGGTTTTTAAGTTAAGGGTT
* * *
26352746 CGTGGTTTTTATGTTAAGGTTT
1 AG-GGTTTTTAAGTTAAGGGTT
* * *
26352768 AGGGCTATTAAGTTAAGGTTT
1 AGGGTTTTTAAGTTAAGGGTT
* * *
26352789 AGGG-TCTTGATTTAAGGGTT
1 AGGGTTTTTAAGTTAAGGGTT
* *
26352809 AGGATTTTTAAGTTAACGGCTT
1 AGGGTTTTTAAGTTAA-GGGTT
**
26352831 ATTGTTTTTAAGTT-AGGGTT
1 AGGGTTTTTAAGTTAAGGGTT
26352851 CAGGGTT
1 -AGGGTT
26352858 ATNNNNNNNN
Statistics
Matches: 498, Mismatches: 88, Indels: 24
0.82 0.14 0.04
Matches are distributed among these distances:
20 34 0.07
21 371 0.74
22 93 0.19
ACGTcount: A:0.24, C:0.02, G:0.27, T:0.47
Consensus pattern (21 bp):
AGGGTTTTTAAGTTAAGGGTT
Found at i:26353754 original size:27 final size:21
Alignment explanation
Indices: 26353680--26353749 Score: 117
Period size: 21 Copynumber: 3.4 Consensus size: 21
26353670 GTTTAGTAGT
*
26353680 TTAAGGTTTAGGGTTTTTAAG
1 TTAAGGGTTAGGGTTTTTAAG
26353701 TTAAGGGTTAGGGTTTTTAAG
1 TTAAGGGTTAGGGTTTTTAAG
26353722 TTAAGGGTTAGGGTTTTT--G
1 TTAAGGGTTAGGGTTTTTAAG
26353741 TTAAGGGTT
1 TTAAGGGTT
26353750 TAAGGTTTGT
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
19 10 0.21
21 38 0.79
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.46
Consensus pattern (21 bp):
TTAAGGGTTAGGGTTTTTAAG
Found at i:26355216 original size:20 final size:20
Alignment explanation
Indices: 26355179--26355216 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
26355169 TTTATTTTTA
*
26355179 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
26355199 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
26355217 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:26356129 original size:10 final size:11
Alignment explanation
Indices: 26356110--26356151 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
26356100 ATTTTTACGG
26356110 TTTAAAAAAAT
1 TTTAAAAAAAT
26356121 TTTAAAAAAAT
1 TTTAAAAAAAT
**
26356132 TTTAAAATTA-
1 TTTAAAAAAAT
26356142 TTTAAAAAAA
1 TTTAAAAAAA
26356152 GGGATTTAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
10 8 0.30
11 19 0.70
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
TTTAAAAAAAT
Found at i:26356245 original size:12 final size:12
Alignment explanation
Indices: 26356206--26356247 Score: 54
Period size: 11 Copynumber: 3.7 Consensus size: 12
26356196 TTAAATATGG
26356206 ATTTGAGA-GAA
1 ATTTGAGAGGAA
26356217 ATTTG-GAAGGAA
1 ATTTGAG-AGGAA
26356229 A-TTGAGAGGAA
1 ATTTGAGAGGAA
26356240 ATTTGAGA
1 ATTTGAGA
26356248 TAGGATTAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
10 1 0.04
11 15 0.56
12 11 0.41
ACGTcount: A:0.43, C:0.00, G:0.31, T:0.26
Consensus pattern (12 bp):
ATTTGAGAGGAA
Found at i:26358186 original size:26 final size:26
Alignment explanation
Indices: 26358151--26358204 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
26358141 ACGCTATTTC
26358151 TAATAAACAAATTTTCTTTTATATAA
1 TAATAAACAAATTTTCTTTTATATAA
*
26358177 TAATATACAAATTTTCTTTTATATAA
1 TAATAAACAAATTTTCTTTTATATAA
26358203 TA
1 TA
26358205 TTAAGATTCG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (26 bp):
TAATAAACAAATTTTCTTTTATATAA
Found at i:26358494 original size:20 final size:20
Alignment explanation
Indices: 26358471--26358513 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
26358461 TGTAAACTTG
* *
26358471 TAATAATTTATGTAATTGAA
1 TAATAATTTATATAATTAAA
*
26358491 TAATATTTTATATAATTAAA
1 TAATAATTTATATAATTAAA
26358511 TAA
1 TAA
26358514 GGTATTGTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.47
Consensus pattern (20 bp):
TAATAATTTATATAATTAAA
Found at i:26367296 original size:14 final size:14
Alignment explanation
Indices: 26367260--26367293 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
26367250 TTTAAGTGAG
26367260 AAATTAATTTAGTT
1 AAATTAATTTAGTT
*
26367274 AATTTAATTTA-TT
1 AAATTAATTTAGTT
26367287 AAATTAA
1 AAATTAA
26367294 ATTAATAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 8 0.44
14 10 0.56
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (14 bp):
AAATTAATTTAGTT
Found at i:26369235 original size:5 final size:6
Alignment explanation
Indices: 26369195--26369239 Score: 72
Period size: 6 Copynumber: 7.5 Consensus size: 6
26369185 TTTCCAAAAC
* *
26369195 TGGAAA TGGAAA TGGGAA TGGAAA TGGAAA TGGAAA TGAAAA TGG
1 TGGAAA TGGAAA TGGAAA TGGAAA TGGAAA TGGAAA TGGAAA TGG
26369240 TCCATTTGCA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.47, C:0.00, G:0.36, T:0.18
Consensus pattern (6 bp):
TGGAAA
Found at i:26369429 original size:27 final size:27
Alignment explanation
Indices: 26369391--26369447 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
26369381 TTTCTCGAAA
26369391 TTTTATCAAGGGTAAAATCGTCAAAAT
1 TTTTATCAAGGGTAAAATCGTCAAAAT
* *
26369418 TTTTATCGAGGGTAAAATTGTCAAAAT
1 TTTTATCAAGGGTAAAATCGTCAAAAT
26369445 TTT
1 TTT
26369448 ACTAGGGGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.39
Consensus pattern (27 bp):
TTTTATCAAGGGTAAAATCGTCAAAAT
Found at i:26369456 original size:26 final size:27
Alignment explanation
Indices: 26369391--26369461 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
26369381 TTTCTCGAAA
26369391 TTTTATCA-AGGGTAAAATCGTCAAAAT
1 TTTTAT-AGAGGGTAAAATCGTCAAAAT
* *
26369418 TTTTATCGAGGGTAAAATTGTCAAAA-
1 TTTTATAGAGGGTAAAATCGTCAAAAT
26369444 TTTTACTAG-GGGTAAAAT
1 TTTTA-TAGAGGGTAAAAT
26369462 AGGGATAAGA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
26 14 0.36
27 25 0.64
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.35
Consensus pattern (27 bp):
TTTTATAGAGGGTAAAATCGTCAAAAT
Found at i:26378698 original size:45 final size:45
Alignment explanation
Indices: 26378649--26378867 Score: 231
Period size: 45 Copynumber: 4.9 Consensus size: 45
26378639 ATACTAGAAA
* *
26378649 CGAGTAAGATCATAGCCGAAAGACGTTATGGCATCACGATTCTAT
1 CGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTCTAT
* * *
26378694 CGAGTAAGACCGTAGCTAAAAGACGTTATGGCATCACAATTCTAT
1 CGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTCTAT
* * * * **
26378739 TGAGCAAGACCATATCTGAAAGACGTTATGGCATTATTATTCTAT
1 CGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTCTAT
* ** * * *
26378784 CGAGTAAGACCATAGCTGAAAGATGCCATGGCATCACGAATCAAA
1 CGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTCTAT
* * * ** *
26378829 CAAATAAGACCATAGTTGAAAGACACTATGGCAACACGA
1 CGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGA
26378868 CGGAAAATGA
Statistics
Matches: 142, Mismatches: 32, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 142 1.00
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (45 bp):
CGAGTAAGACCATAGCTGAAAGACGTTATGGCATCACGATTCTAT
Found at i:26378897 original size:46 final size:46
Alignment explanation
Indices: 26378831--26378998 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
26378821 GAATCAAACA
26378831 AATAAGACCATAGTTGAAAGACACTATGGCAACA-CGACGGAAAATG
1 AATAAGACCATAGTTGAAAGACACTATGGCAACATCGA-GGAAAATG
* * * *
26378877 AATAAGACCATAATTTAAAGAAACTATGGCAACATGGAGGAAAATG
1 AATAAGACCATAGTTGAAAGACACTATGGCAACATCGAGGAAAATG
* * *
26378923 AATAAGACCATGGTTGAAAGACATTATGG-AATCAAGTCGA-G--AATA
1 AATAAGACCATAGTTGAAAGACACTATGGCAA-C-A-TCGAGGAAAATG
* *
26378968 AATAAGACCATGGTTGAAAGACACCATGGCA
1 AATAAGACCATAGTTGAAAGACACTATGGCA
26378999 CCCTCCGATC
Statistics
Matches: 104, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
45 32 0.31
46 65 0.62
47 4 0.04
48 3 0.03
ACGTcount: A:0.46, C:0.14, G:0.21, T:0.18
Consensus pattern (46 bp):
AATAAGACCATAGTTGAAAGACACTATGGCAACATCGAGGAAAATG
Found at i:26386962 original size:27 final size:27
Alignment explanation
Indices: 26386920--26387157 Score: 245
Period size: 27 Copynumber: 8.8 Consensus size: 27
26386910 CAAAATACCA
* *
26386920 AAATACCCCCATAGGGTAAAATTACAG
1 AAATACCCTCAAAGGGTAAAATTACAG
* *
26386947 AAATGCCCTCGAAGGGTAAAATTACCA-
1 AAATACCCTCAAAGGGTAAAATTA-CAG
*
26386974 AAATACCCTCAAAGGGTAAAATTACCG
1 AAATACCCTCAAAGGGTAAAATTACAG
* *
26387001 AAATAACCC-CATAGGGTGAAATTATC-G
1 AAAT-ACCCTCAAAGGGTAAAATTA-CAG
* *
26387028 AAATACCCTTAAAGGGTAAAATTACTG
1 AAATACCCTCAAAGGGTAAAATTACAG
*
26387055 AAATACCCTCAAAGGGTAAAATTACCG
1 AAATACCCTCAAAGGGTAAAATTACAG
* *
26387082 AAATACCCCCATAGGGTAAAATTATC-G
1 AAATACCCTCAAAGGGTAAAATTA-CAG
* *
26387109 AAATACCC-CTATAGGATAAAATTACTA-
1 AAATACCCTC-AAAGGGTAAAATTAC-AG
*
26387136 AAATACCCTCGAAGGGTAAAAT
1 AAATACCCTCAAAGGGTAAAAT
26387158 GACTGTTATA
Statistics
Matches: 180, Mismatches: 20, Indels: 22
0.81 0.09 0.10
Matches are distributed among these distances:
26 8 0.04
27 163 0.91
28 9 0.05
ACGTcount: A:0.44, C:0.20, G:0.15, T:0.21
Consensus pattern (27 bp):
AAATACCCTCAAAGGGTAAAATTACAG
Found at i:26386992 original size:54 final size:52
Alignment explanation
Indices: 26386911--26387157 Score: 273
Period size: 54 Copynumber: 4.6 Consensus size: 52
26386901 AATGGGCCAC
* * *
26386911 AAAA-TACCAAAATACCCCCATAGGGTAAAATTACAGAAATGCCCTCGA-AGGGT
1 AAAATTACCAAAATACCCTCAAAGGGTAAAATTAC-GAAATACCC-C-ATAGGGT
26386964 AAAATTACCAAAATACCCTCAAAGGGTAAAATTACCGAAATAACCCCATAGGGT
1 AAAATTACCAAAATACCCTCAAAGGGTAAAATTA-CGAAAT-ACCCCATAGGGT
* * * * *
26387018 GAAATTATCGAAATACCCTTAAAGGGTAAAATTACTGAAATACCCTCAAAGGGT
1 AAAATTACCAAAATACCCTCAAAGGGTAAAATTAC-GAAATACCC-CATAGGGT
* * * *
26387072 AAAATTACCGAAATACCCCCATAGGGTAAAATTATCGAAATACCCCTATAGGAT
1 AAAATTACCAAAATACCCTCAAAGGGTAAAATTA-CGAAATACCCC-ATAGGGT
* *
26387126 AAAATTACTAAAATACCCTCGAAGGGTAAAAT
1 AAAATTACCAAAATACCCTCAAAGGGTAAAAT
26387158 GACTGTTATA
Statistics
Matches: 166, Mismatches: 20, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
53 11 0.07
54 150 0.90
55 5 0.03
ACGTcount: A:0.45, C:0.20, G:0.15, T:0.21
Consensus pattern (52 bp):
AAAATTACCAAAATACCCTCAAAGGGTAAAATTACGAAATACCCCATAGGGT
Found at i:26387059 original size:81 final size:81
Alignment explanation
Indices: 26386911--26387157 Score: 363
Period size: 81 Copynumber: 3.1 Consensus size: 81
26386901 AATGGGCCAC
* * ** *
26386911 AAAA-TACCAAAATACCCCCATAGGGTAAAATTA-CAGAAATGCCCTCGAAGGGTAAAATTACCA
1 AAAATTACCGAAATACCCCCATAGGGTAAAATTATC-GAAATACCCTTAAAGGGTAAAATTACTA
26386974 AAATACCCTCAAAGGGT
65 AAATACCCTCAAAGGGT
* * *
26386991 AAAATTACCGAAATAACCCCATAGGGTGAAATTATCGAAATACCCTTAAAGGGTAAAATTACTGA
1 AAAATTACCGAAATACCCCCATAGGGTAAAATTATCGAAATACCCTTAAAGGGTAAAATTACTAA
26387056 AATACCCTCAAAGGGT
66 AATACCCTCAAAGGGT
* * *
26387072 AAAATTACCGAAATACCCCCATAGGGTAAAATTATCGAAATACCCCTATAGGATAAAATTACTAA
1 AAAATTACCGAAATACCCCCATAGGGTAAAATTATCGAAATACCCTTAAAGGGTAAAATTACTAA
*
26387137 AATACCCTCGAAGGGT
66 AATACCCTCAAAGGGT
26387153 AAAAT
1 AAAAT
26387158 GACTGTTATA
Statistics
Matches: 150, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
80 4 0.03
81 145 0.97
82 1 0.01
ACGTcount: A:0.45, C:0.20, G:0.15, T:0.21
Consensus pattern (81 bp):
AAAATTACCGAAATACCCCCATAGGGTAAAATTATCGAAATACCCTTAAAGGGTAAAATTACTAA
AATACCCTCAAAGGGT
Found at i:26387370 original size:26 final size:26
Alignment explanation
Indices: 26387340--26387411 Score: 99
Period size: 26 Copynumber: 2.8 Consensus size: 26
26387330 CCACATATAT
26387340 TGTTACTGGCAGCTTTACTGCATTAC
1 TGTTACTGGCAGCTTTACTGCATTAC
* * * *
26387366 TGTTACTAGCAGCTTTGCTGCGTTAT
1 TGTTACTGGCAGCTTTACTGCATTAC
*
26387392 TATTACTGGCAGCTTTACTG
1 TGTTACTGGCAGCTTTACTG
26387412 TGATATTGGT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.40
Consensus pattern (26 bp):
TGTTACTGGCAGCTTTACTGCATTAC
Found at i:26387418 original size:26 final size:25
Alignment explanation
Indices: 26387336--26387419 Score: 87
Period size: 26 Copynumber: 3.2 Consensus size: 25
26387326 TTTGCCACAT
*
26387336 ATATTGTTACTGGCAGCTTTACTGC
1 ATATTGTTACTGGCAGCTTTACTGG
* * *
26387361 ATTACTGTTACTAGCAGCTTTGCTGCG
1 A-TATTGTTACTGGCAGCTTTACTG-G
* *
26387388 TTATTATTACTGGCAGCTTTACTGTG
1 ATATTGTTACTGGCAGCTTTACTG-G
26387414 ATATTG
1 ATATTG
26387420 GTGTGTTGGC
Statistics
Matches: 45, Mismatches: 12, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
25 1 0.02
26 44 0.98
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (25 bp):
ATATTGTTACTGGCAGCTTTACTGG
Found at i:26389431 original size:41 final size:40
Alignment explanation
Indices: 26389375--26389497 Score: 138
Period size: 41 Copynumber: 3.0 Consensus size: 40
26389365 GTAATCACAT
* * *
26389375 ATCGATGCCACTGTCCCAGATAGGGTCTTACACGAAACAA
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACGAAACAA
*
26389415 ATACGATGCCAATGTCCTAGACATGGTCTTACACGTAACACAA
1 AT-CGATGCCAATGTCCCAGACATGGTCTTACACG-AA-ACAA
* * * *
26389458 GTCGGTGCTAACGTCCCAGACATGGTCTTACACGATAACA
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACGA-AACA
26389498 TATATCAGAA
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
40 2 0.03
41 32 0.46
42 31 0.44
43 5 0.07
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.22
Consensus pattern (40 bp):
ATCGATGCCAATGTCCCAGACATGGTCTTACACGAAACAA
Found at i:26389485 original size:42 final size:43
Alignment explanation
Indices: 26389340--26389497 Score: 146
Period size: 42 Copynumber: 3.7 Consensus size: 43
26389330 CGTACAATGT
** * * *
26389340 CAACGTCCTGGACGTGGTCTTACATGTAATCACATAT-CGATGC
1 CAACGTCCCAGACATGGTCTTACACGTAA-CACAAATACGATGC
* *
26389383 C-ACTGTCCCAGATAGGGTCTTACACG-AA-ACAAATACGATGC
1 CAAC-GTCCCAGACATGGTCTTACACGTAACACAAATACGATGC
* * * *
26389424 CAATGTCCTAGACATGGTCTTACACGTAACACAAGT-CGGTGC
1 CAACGTCCCAGACATGGTCTTACACGTAACACAAATACGATGC
*
26389466 TAACGTCCCAGACATGGTCTTACACGATAACA
1 CAACGTCCCAGACATGGTCTTACACG-TAACA
26389498 TATATCAGAA
Statistics
Matches: 93, Mismatches: 16, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
40 5 0.05
41 26 0.28
42 35 0.38
43 27 0.29
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (43 bp):
CAACGTCCCAGACATGGTCTTACACGTAACACAAATACGATGC
Found at i:26390880 original size:28 final size:28
Alignment explanation
Indices: 26390839--26390894 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
26390829 CATTGTATTG
* *
26390839 ATTACTGTATTGGGCTAAGGCCCACACT
1 ATTACTGTAATGGGCTAAGGACCACACT
26390867 ATTACTGTAATGGGCTAAGGACCACACT
1 ATTACTGTAATGGGCTAAGGACCACACT
26390895 GTACTAATAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (28 bp):
ATTACTGTAATGGGCTAAGGACCACACT
Found at i:26390915 original size:33 final size:28
Alignment explanation
Indices: 26390841--26390923 Score: 78
Period size: 33 Copynumber: 2.8 Consensus size: 28
26390831 TTGTATTGAT
* *
26390841 TACTGTATTGGGCTAAGGCCCACACTAT
1 TACTGTATAGGGCTAAGGCCCACACTAA
26390869 TACTGTA-ATGGGCTAAGGACCACACTGTACTAA
1 TACTGTATA-GGGCTAAGG-CC-CAC---ACTAA
*
26390902 TACTGTATAGGGCTCAGGCCCA
1 TACTGTATAGGGCTAAGGCCCA
26390924 GACTGATTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
28 16 0.36
29 2 0.04
30 3 0.07
31 2 0.04
32 2 0.04
33 19 0.42
34 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (28 bp):
TACTGTATAGGGCTAAGGCCCACACTAA
Done.