Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_21 ID=scaffold_21-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 123339
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.32
Warning! 8492 characters in sequence are not A, C, G, or T
Found at i:1372 original size:21 final size:21
Alignment explanation
Indices: 1346--1395 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
1336 AACAACTCAC
*
1346 TTAGTTTAATGAATAAAAAGT
1 TTAGTTTAATCAATAAAAAGT
1367 TTAGTTTAATCAATAAAAAGT
1 TTAGTTTAATCAATAAAAAGT
1388 TTAGTTTA
1 TTAGTTTA
1396 GTTTAGTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.44, C:0.02, G:0.12, T:0.42
Consensus pattern (21 bp):
TTAGTTTAATCAATAAAAAGT
Found at i:1393 original size:5 final size:5
Alignment explanation
Indices: 1385--1418 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
1375 ATCAATAAAA
1385 AGTTT AGTTT AGTTT AGTTT AGTTT AGTTT AGTT
1 AGTTT AGTTT AGTTT AGTTT AGTTT AGTTT AGTT
1419 GTGTGGCCAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.59
Consensus pattern (5 bp):
AGTTT
Found at i:1784 original size:25 final size:25
Alignment explanation
Indices: 1751--1844 Score: 134
Period size: 25 Copynumber: 3.7 Consensus size: 25
1741 CCAACACACC
* *
1751 AATATCGCAGCAAAGCTACCAGAAT
1 AATAACGCAGCAAAGCTGCCAGAAT
*
1776 AATAACGCAACAAAGCTGCCAGAAT
1 AATAACGCAGCAAAGCTGCCAGAAT
*
1801 AATAACGCAGCAAAGCTGCCAGTAAC
1 AATAACGCAGCAAAGCTGCCAG-AAT
*
1827 AGTAACGCAGCAAAGCTG
1 AATAACGCAGCAAAGCTG
1845 TCGGTAACAG
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
25 43 0.69
26 19 0.31
ACGTcount: A:0.44, C:0.24, G:0.19, T:0.13
Consensus pattern (25 bp):
AATAACGCAGCAAAGCTGCCAGAAT
Found at i:1851 original size:26 final size:26
Alignment explanation
Indices: 1756--1856 Score: 116
Period size: 25 Copynumber: 4.0 Consensus size: 26
1746 ACACCAATAT
* * *
1756 CGCAGCAAAGCTACCAG-AATAATAA
1 CGCAGCAAAGCTGCCAGTAACAGTAA
* * *
1781 CGCAACAAAGCTGCCAG-AATAATAA
1 CGCAGCAAAGCTGCCAGTAACAGTAA
1806 CGCAGCAAAGCTGCCAGTAACAGTAA
1 CGCAGCAAAGCTGCCAGTAACAGTAA
* *
1832 CGCAGCAAAGCTGTCGGTAACAGTA
1 CGCAGCAAAGCTGCCAGTAACAGTA
1857 TATGTCGCAA
Statistics
Matches: 68, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
25 39 0.57
26 29 0.43
ACGTcount: A:0.42, C:0.25, G:0.21, T:0.13
Consensus pattern (26 bp):
CGCAGCAAAGCTGCCAGTAACAGTAA
Found at i:2173 original size:27 final size:27
Alignment explanation
Indices: 2141--2313 Score: 199
Period size: 27 Copynumber: 6.4 Consensus size: 27
2131 NNNNTTTCGA
*
2141 TCATTTTACTCTTCGAGGGTATTTCAG
1 TCATTTTACCCTTCGAGGGTATTTCAG
* *
2168 TCATTTTACCCTTCGAGGGTATTTTAT
1 TCATTTTACCCTTCGAGGGTATTTCAG
*
2195 TCATTTTACCCTTGGAGGGTATTTC-G
1 TCATTTTACCCTTCGAGGGTATTTCAG
2221 ATCATTTTACCCTTCGAGGGTATTTCAG
1 -TCATTTTACCCTTCGAGGGTATTTCAG
* * *
2249 T-TTTTTCACCCTTCGAGCGTATTTCGG
1 TCATTTT-ACCCTTCGAGGGTATTTCAG
* * * *
2276 TTATTTTAACCTTCAAGGGTATTT-TG
1 TCATTTTACCCTTCGAGGGTATTTCAG
2302 ATCATTTTACCC
1 -TCATTTTACCC
2314 ACAAATCGCA
Statistics
Matches: 124, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
26 5 0.04
27 114 0.92
28 5 0.04
ACGTcount: A:0.18, C:0.20, G:0.17, T:0.45
Consensus pattern (27 bp):
TCATTTTACCCTTCGAGGGTATTTCAG
Found at i:2271 original size:81 final size:81
Alignment explanation
Indices: 2135--2313 Score: 245
Period size: 81 Copynumber: 2.2 Consensus size: 81
2125 NNNNNNNNNN
* * *
2135 TTTCGATCATTTTACTCTTCGAGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTT-TATTCAT
1 TTTCGATCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGAGCGTATTTCGATT-AT
* **
2199 TTTACCCTTGGAGGGTA
65 TTTAACCTTCAAGGGTA
* *
2216 TTTCGATCATTTTACCCTTCGAGGGTATTTCAGT-TTTTTCACCCTTCGAGCGTATTTCGGTTAT
1 TTTCGATCATTTTACCCTTCGAGGGTATTTCAGTCATTTT-ACCCTTCGAGCGTATTTCGATTAT
2280 TTTAACCTTCAAGGGTA
65 TTTAACCTTCAAGGGTA
*
2297 TTTTGATCATTTTACCC
1 TTTCGATCATTTTACCC
2314 ACAAATCGCA
Statistics
Matches: 87, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
80 4 0.05
81 81 0.93
82 2 0.02
ACGTcount: A:0.18, C:0.20, G:0.17, T:0.45
Consensus pattern (81 bp):
TTTCGATCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCGAGCGTATTTCGATTATT
TTAACCTTCAAGGGTA
Found at i:3295 original size:18 final size:18
Alignment explanation
Indices: 3261--3295 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
3251 AACAAGAAGA
*
3261 GAAAAAAAAGAATAAAAG
1 GAAAAAAAAGAAAAAAAG
*
3279 GAAAAGAAAGAAAAAAA
1 GAAAAAAAAGAAAAAAA
3296 TAAGCAAACC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (18 bp):
GAAAAAAAAGAAAAAAAG
Found at i:5441 original size:45 final size:44
Alignment explanation
Indices: 5381--5545 Score: 150
Period size: 45 Copynumber: 3.6 Consensus size: 44
5371 TAAATCTATC
* * *
5381 ACCCACCAAATACAACCAATTTACCCTCCAAACACAACAAAACAT
1 ACCCTCCAAACACAACCAATTTACCCTCCGAACACAAC-AAACAT
* * * **
5426 AGCCTCCAAACACAACTAATTTACCCTTCGAACACAACCAAATGT
1 ACCCTCCAAACACAACCAATTTACCCTCCGAACACAA-CAAACAT
* * * *
5471 ACCCTCAAAACAAAACCATATATATAACCTCCGAACACAACCAACTAT
1 ACCCTCCAAACACAACCA-AT-T-TACCCTCCGAACACAACAAAC-AT
* *
5519 ACCCTCCAAACACAATCAATATACCCT
1 ACCCTCCAAACACAACCAATTTACCCT
5546 TCAACATATC
Statistics
Matches: 93, Mismatches: 22, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
45 54 0.58
46 3 0.03
47 6 0.06
48 30 0.32
ACGTcount: A:0.45, C:0.36, G:0.02, T:0.17
Consensus pattern (44 bp):
ACCCTCCAAACACAACCAATTTACCCTCCGAACACAACAAACAT
Found at i:5482 original size:23 final size:23
Alignment explanation
Indices: 5381--5545 Score: 138
Period size: 23 Copynumber: 7.2 Consensus size: 23
5371 TAAATCTATC
* * *
5381 ACCCACCAAATACAACC-AATTT
1 ACCCTCCAAACACAACCAAATAT
* *
5403 ACCCTCCAAACACAACAAAACAT
1 ACCCTCCAAACACAACCAAATAT
* * *
5426 AGCCTCCAAACACAA-CTAATTT
1 ACCCTCCAAACACAACCAAATAT
* * *
5448 ACCCTTCGAACACAACCAAATGT
1 ACCCTCCAAACACAACCAAATAT
* *
5471 ACCCTCAAAACAAAACCATATATAT
1 ACCCTCCAAACACAACCA-A-ATAT
* * *
5496 AACCTCCGAACACAACCAACTAT
1 ACCCTCCAAACACAACCAAATAT
*
5519 ACCCTCCAAACACAATC-AATAT
1 ACCCTCCAAACACAACCAAATAT
5541 ACCCT
1 ACCCT
5546 TCAACATATC
Statistics
Matches: 110, Mismatches: 29, Indels: 8
0.75 0.20 0.05
Matches are distributed among these distances:
22 38 0.35
23 53 0.48
24 2 0.02
25 17 0.15
ACGTcount: A:0.45, C:0.36, G:0.02, T:0.17
Consensus pattern (23 bp):
ACCCTCCAAACACAACCAAATAT
Found at i:9824 original size:23 final size:22
Alignment explanation
Indices: 9721--9929 Score: 150
Period size: 22 Copynumber: 9.1 Consensus size: 22
9711 TAAAGCTATC
* *
9721 ACCCCCCAAACACAACCAATTT
1 ACCCTCCAAACACAACCAATAT
* * * *
9743 ACTCTCGAAACACAGCCAATTT
1 ACCCTCCAAACACAACCAATAT
9765 ACCCTCCAAACACAACCATATATAT
1 ACCCTCCAAACACAACC--A-ATAT
* *
9790 AACCTCCGAACACAACCAAGTAT
1 ACCCTCCAAACACAACCAA-TAT
* *
9813 ACCTTCCAAACACAACCAATTT
1 ACCCTCCAAACACAACCAATAT
** * *
9835 ACCCTCTGAACATAACCAAATGT
1 ACCCTCCAAACACAACC-AATAT
* * *
9858 A-CTTGCAAAACACCACCATATATAT
1 ACCCT-CCAAACACAACC--A-ATAT
* *
9883 AACCTCCGAACACAACCAACTAT
1 ACCCTCCAAACACAACCAA-TAT
9906 ACCCTCCAAACACAACCAATAT
1 ACCCTCCAAACACAACCAATAT
9928 AC
1 AC
9930 TCTTTACATA
Statistics
Matches: 145, Mismatches: 32, Indels: 20
0.74 0.16 0.10
Matches are distributed among these distances:
22 56 0.39
23 54 0.37
24 2 0.01
25 31 0.21
26 2 0.01
ACGTcount: A:0.42, C:0.36, G:0.04, T:0.18
Consensus pattern (22 bp):
ACCCTCCAAACACAACCAATAT
Found at i:14818 original size:20 final size:21
Alignment explanation
Indices: 14775--14819 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
14765 AACAACTCAC
*
14775 TTAGTTTAATGAATAAAAAGT
1 TTAGTTTAATCAATAAAAAGT
14796 TTAGTTTAATCAATAAAAA-T
1 TTAGTTTAATCAATAAAAAGT
14816 TTAG
1 TTAG
14820 AATCTCACCT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.47, C:0.02, G:0.11, T:0.40
Consensus pattern (21 bp):
TTAGTTTAATCAATAAAAAGT
Found at i:30588 original size:114 final size:114
Alignment explanation
Indices: 30388--30850 Score: 511
Period size: 114 Copynumber: 4.1 Consensus size: 114
30378 TAAAGAAAGT
* * * * * **
30388 ATTAGTGGCGCATATTTAAAAATGCCGCTAAAGCATAGAATTAGCGGCGAGTCGCAAAAAGCGCC
1 ATTAGTGGCGCTTATATAAAAACGCCGCTAAAGCATAGTATTAGCGGCGAGTAGTGAAAAGCGCC
* * *
30453 TCAATACATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTACACTAGC
66 GCAATATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGC
* * * *
30502 ATTAGTGGCGCTTATAAAAAAACGCCGCTACAGAATAGTATTAGCGGCGAGTAGTGAAAAGCGTC
1 ATTAGTGGCGCTTATATAAAAACGCCGCTAAAGCATAGTATTAGCGGCGAGTAGTGAAAAGCGCC
* * * * *
30567 GCAATATTTCTTAACCAAAACGCAGAGTTCGGTCTTGACGTATATTAGG
66 GCAATATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGC
*** * * * * * * *
30616 ATTAGTGGCGCTTATCGGAAAATGCTGGTAAAGCATAGTATTAGCGAC-ATTTATTGTAAAGCGC
1 ATTAGTGGCGCTTATATAAAAACGCCGCTAAAGCATAGTATTAGCGGCGA-GTAGTGAAAAGCGC
* * *
30680 CGCAA-A-ATATTAACCAAAACGCAGCGCTTTGGTCTTGATGTATACTAGC
65 CGCAATATATCTTAACCAAAACGCAGAG-TTTGGTCTTGAGGTATACTAGC
* * * *
30729 AGTAGTGGCGCTTATATTAAAACGCCGCTAAATCATAGTATTAGCGGCGAGTAGTGAAAAGTGCC
1 ATTAGTGGCGCTTATATAAAAACGCCGCTAAAGCATAGTATTAGCGGCGAGTAGTGAAAAGCGCC
* * * *
30794 GCAAGATTTCTTAACCAAAACGCAGAGTTTGGTCTTGCGGTATATTAGGC
66 GCAATATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTA-GC
30844 -TTAGTGG
1 ATTAGTGG
30851 TGTTTATTGG
Statistics
Matches: 284, Mismatches: 59, Indels: 12
0.80 0.17 0.03
Matches are distributed among these distances:
112 17 0.06
113 74 0.26
114 174 0.61
115 19 0.07
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (114 bp):
ATTAGTGGCGCTTATATAAAAACGCCGCTAAAGCATAGTATTAGCGGCGAGTAGTGAAAAGCGCC
GCAATATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGC
Found at i:30784 original size:227 final size:228
Alignment explanation
Indices: 30445--30864 Score: 630
Period size: 227 Copynumber: 1.8 Consensus size: 228
30435 CGAGTCGCAA
* * *
30445 AAAGCGCCTCAATACATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTACACTAGCATTAGTGG
1 AAAGCGCCGCAATACATATTAACCAAAACGCAGAGTTTGGTCTTGAGGTACACTAGCAGTAGTGG
* * *
30510 CGCTTATAAAAAAACGCCGCTACAGAATAGTATTAGCGGCGAGTAGTGAAAAGCGTCGCAATATT
66 CGCTTATAAAAAAACGCCGCTAAAGAATAGTATTAGCGGCGAGTAGTGAAAAGCGCCGCAAGATT
30575 TCTTAACCAAAACGCAGAGTTCGGTCTTGAC-GTATATTAGGATTAGTGGCGCTTATCGGAAAAT
131 TCTTAACCAAAACGCAGAGTTCGGTCTTG-CGGTATATTAGGATTAGTGGCGCTTATCGGAAAAT
30639 GCTGGTAAAGCATAGTATTAGCGACATTTATTGT
195 GCTGGTAAAGCATAGTATTAGCGACATTTATTGT
* * *
30673 AAAGCGCCGCAA-A-ATATTAACCAAAACGCAGCGCTTTGGTCTTGATGTATACTAGCAGTAGTG
1 AAAGCGCCGCAATACATATTAACCAAAACGCAGAG-TTTGGTCTTGAGGTACACTAGCAGTAGTG
** ** *
30736 GCGCTTATATTAAAACGCCGCTAAATCATAGTATTAGCGGCGAGTAGTGAAAAGTGCCGCAAGAT
65 GCGCTTATAAAAAAACGCCGCTAAAGAATAGTATTAGCGGCGAGTAGTGAAAAGCGCCGCAAGAT
* * * * *
30801 TTCTTAACCAAAACGCAGAGTTTGGTCTTGCGGTATATTAGGCTTAGTGGTGTTTATTGGAAAA
130 TTCTTAACCAAAACGCAGAGTTCGGTCTTGCGGTATATTAGGATTAGTGGCGCTTATCGGAAAA
30865 CGCCGCAAAA
Statistics
Matches: 171, Mismatches: 19, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
226 19 0.11
227 141 0.82
228 11 0.06
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (228 bp):
AAAGCGCCGCAATACATATTAACCAAAACGCAGAGTTTGGTCTTGAGGTACACTAGCAGTAGTGG
CGCTTATAAAAAAACGCCGCTAAAGAATAGTATTAGCGGCGAGTAGTGAAAAGCGCCGCAAGATT
TCTTAACCAAAACGCAGAGTTCGGTCTTGCGGTATATTAGGATTAGTGGCGCTTATCGGAAAATG
CTGGTAAAGCATAGTATTAGCGACATTTATTGT
Found at i:30985 original size:188 final size:188
Alignment explanation
Indices: 30665--31058 Score: 601
Period size: 188 Copynumber: 2.1 Consensus size: 188
30655 ATTAGCGACA
* * *
30665 TTTATTGTAAAGCGCCGCAAAATATTAACCAAAACGCAGCGCTTTGGTCTTGATGTATACTAGCA
1 TTTATTGGAAAACGCCGCAAAAGATTAACCAAAACGCAGCGCTTTGGTCTTGATGTATACTAGCA
* * * * *
30730 GTAGTGGCGCTTATATTAAAACGCCGCTAAATCATAGTATTAGCGGCGAGTAGTGAAAAGTGCCG
66 GTAGTGGCACTTATATTAAAACGCCGCTAAATCACAGTAGTAGCGGCGAGTACTGAAAAGCGCCG
* * * *
30795 CAAGATTTCTTAACCAAAACGCAGAGTTTGGTCTTGCGGTATATTAGGCTTAGTGGTG
131 CAAGATTTCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTACATTAGGATTAGTGGCG
* *
30853 TTTATTGGAAAACGCCGCAAAAGATTAACCAAAACGTAGCGCTTTGGTCTTGATGTATAGTAGCA
1 TTTATTGGAAAACGCCGCAAAAGATTAACCAAAACGCAGCGCTTTGGTCTTGATGTATACTAGCA
* *
30918 TTAGTGGCACTTATATTAAAACGCTGCTAAAGT-ACAGTAGTAGCGGCGAGTACTGAAAAGCGCC
66 GTAGTGGCACTTATATTAAAACGCCGCTAAA-TCACAGTAGTAGCGGCGAGTACTGAAAAGCGCC
*
30982 GCAATATTTCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTACATTAGGATTAGTGGCG
130 GCAAGATTTCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTACATTAGGATTAGTGGCG
* *
31041 CTTATTTGAAAACGCCGC
1 TTTATTGGAAAACGCCGC
31059 TAAATCATAG
Statistics
Matches: 186, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
188 185 0.99
189 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (188 bp):
TTTATTGGAAAACGCCGCAAAAGATTAACCAAAACGCAGCGCTTTGGTCTTGATGTATACTAGCA
GTAGTGGCACTTATATTAAAACGCCGCTAAATCACAGTAGTAGCGGCGAGTACTGAAAAGCGCCG
CAAGATTTCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTACATTAGGATTAGTGGCG
Found at i:31167 original size:113 final size:112
Alignment explanation
Indices: 30854--31193 Score: 373
Period size: 114 Copynumber: 3.0 Consensus size: 112
30844 TTAGTGGTGT
* * *
30854 TTATTGGAAAA-CGCCGCAAAAGATTAACCAAAACGTAGCGCTTTGGTCTTGATGTATAGTAGCA
1 TTATT-GAAAAGCGCCGCAAAATATTAACCAAAACGCAGCGCTTTGGTCTTGATGTATACTAGCA
* * * * *
30918 TTAGTGGCACTTATATTAAAACGCTGCTAAAGT-ACAGTAGTAGCGGCGA
65 TTAGTGGCGCTTAT-TTAAAACGCCGCTAAA-TCATAGTATTAGCGGCGC
* * * * * * * * *
30967 GTACTGAAAAGCGCCGCAATATTTCTTAACCAAAACGCAGAG-TTTGGTCTTGAGGTACATTAGG
1 TTATTGAAAAGCGCCGCAA-A-ATATTAACCAAAACGCAGCGCTTTGGTCTTGATGTATACTAGC
*
31031 ATTAGTGGCGCTTATTTGAAAACGCCGCTAAATCATAGTATTAGCAGCGC
64 ATTAGTGGCGCTTATTT-AAAACGCCGCTAAATCATAGTATTAGCGGCGC
*
31081 TTATTGTAAAGCGCCGCAAAATATTAACCAAAACGCAGCGCTTTGGTCTTGATGTATACTAGCAG
1 TTATTGAAAAGCGCCGCAAAATATTAACCAAAACGCAGCGCTTTGGTCTTGATGTATACTAGCA-
* * * *
31146 TT-GTAGCGCTTATGGTAAAACGCCGCTAAAACATATTATTAGCGGCGC
65 TTAGTGGCGCTTAT-TTAAAACGCCGCTAAATCATAGTATTAGCGGCGC
31194 GTTGTGGGAA
Statistics
Matches: 187, Mismatches: 32, Indels: 16
0.80 0.14 0.07
Matches are distributed among these distances:
112 22 0.12
113 73 0.39
114 77 0.41
115 15 0.08
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (112 bp):
TTATTGAAAAGCGCCGCAAAATATTAACCAAAACGCAGCGCTTTGGTCTTGATGTATACTAGCAT
TAGTGGCGCTTATTTAAAACGCCGCTAAATCATAGTATTAGCGGCGC
Found at i:31206 original size:113 final size:112
Alignment explanation
Indices: 30860--31210 Score: 359
Period size: 113 Copynumber: 3.1 Consensus size: 112
30850 GTGTTTATTG
* * *
30860 GAAAA-CGCCGCAAAAGATTAACCAAAACGTAGCGCTTTGGTCTTGATGTATAGTAGCATTAGTG
1 GAAAAGCGCCGCAAAATATTAACCAAAACGCAGCGCTTTGGTCTTGATGTATACTAGCATTAGTG
* * ** * * * *
30924 GCACTTATATTAAAACGCTGCTAAAGTACAGTAGTAGCGGCGAGTACT
66 GCGCTTAT-TTAAAACGCCGCTAAAACATAGTATTAGCGGCGCGTTCT
* * * * * * *
30972 GAAAAGCGCCGCAATATTTCTTAACCAAAACGCAGAG-TTTGGTCTTGAGGTACATTAGGATTAG
1 GAAAAGCGCCGCAA-A-ATATTAACCAAAACGCAGCGCTTTGGTCTTGATGTATACTAGCATTAG
* * *
31036 TGGCGCTTATTTGAAAACGCCGCTAAATCATAGTATTAGCAGCGC-TTATT
64 TGGCGCTTATTT-AAAACGCCGCTAAAACATAGTATTAGCGGCGCGTT-CT
*
31086 GTAAAGCGCCGCAAAATATTAACCAAAACGCAGCGCTTTGGTCTTGATGTATACTAGCAGTT-GT
1 GAAAAGCGCCGCAAAATATTAACCAAAACGCAGCGCTTTGGTCTTGATGTATACTAGCA-TTAGT
* * * *
31150 AGCGCTTATGGTAAAACGCCGCTAAAACATATTATTAGCGGCGCGTTGT
65 GGCGCTTAT-TTAAAACGCCGCTAAAACATAGTATTAGCGGCGCGTTCT
**
31199 GGGAAGCGCCGC
1 GAAAAGCGCCGC
31211 TAGATTATTA
Statistics
Matches: 195, Mismatches: 35, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
112 22 0.11
113 81 0.42
114 77 0.39
115 15 0.08
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (112 bp):
GAAAAGCGCCGCAAAATATTAACCAAAACGCAGCGCTTTGGTCTTGATGTATACTAGCATTAGTG
GCGCTTATTTAAAACGCCGCTAAAACATAGTATTAGCGGCGCGTTCT
Found at i:34822 original size:9 final size:9
Alignment explanation
Indices: 34796--35372 Score: 527
Period size: 9 Copynumber: 65.4 Consensus size: 9
34786 CACAAATTAA
34796 ATAACTTAC
1 ATAACTTAC
34805 ATTAA-TTAC
1 A-TAACTTAC
34814 ATAACTTAC
1 ATAACTTAC
* * *
34823 AAAAATTAA
1 ATAACTTAC
34832 ATAACTTAC
1 ATAACTTAC
34841 ATAACTTAC
1 ATAACTTAC
*
34850 ATAACTTAA
1 ATAACTTAC
34859 ATAACTTAC
1 ATAACTTAC
34868 ATAACTTAC
1 ATAACTTAC
*
34877 ATAAATTA-
1 ATAACTTAC
*
34885 AGAACCTTAC
1 ATAA-CTTAC
34895 ATAACTTAC
1 ATAACTTAC
34904 ATAACTTAC
1 ATAACTTAC
* *
34913 ATAAATTAA
1 ATAACTTAC
34922 ATAACTTAC
1 ATAACTTAC
34931 ATAACTTAC
1 ATAACTTAC
*
34940 ATAAATTA-
1 ATAACTTAC
34948 AGTAACTTAC
1 A-TAACTTAC
34958 ATTAA-TTAC
1 A-TAACTTAC
34967 ATAACTTAC
1 ATAACTTAC
* * *
34976 AAAAATTAA
1 ATAACTTAC
34985 ATAACTTAC
1 ATAACTTAC
34994 ATAACTTAC
1 ATAACTTAC
*
35003 ATAAATTA-
1 ATAACTTAC
35011 AGTAACTTAC
1 A-TAACTTAC
35021 ATAACTTAC
1 ATAACTTAC
* *
35030 ATAAATTAA
1 ATAACTTAC
35039 ATAACTTAC
1 ATAACTTAC
*
35048 TTAACTTAC
1 ATAACTTAC
*
35057 ATAAATTA-
1 ATAACTTAC
35065 AGTAACTTAC
1 A-TAACTTAC
35075 ATAACTTAC
1 ATAACTTAC
*
35084 ATAAATTA-
1 ATAACTTAC
35092 AGTAACTTAC
1 A-TAACTTAC
35102 ATAACTTAC
1 ATAACTTAC
* *
35111 ATAAATTAA
1 ATAACTTAC
35120 ATAACTTAC
1 ATAACTTAC
35129 ATAACTTAC
1 ATAACTTAC
*
35138 ATAAATTA-
1 ATAACTTAC
35146 AGTAACTTAC
1 A-TAACTTAC
35156 ATAACTTAC
1 ATAACTTAC
35165 ATAACTTAC
1 ATAACTTAC
35174 ATAA---A-
1 ATAACTTAC
*
35179 TTAACTTAC
1 ATAACTTAC
35188 ATTAA-TTAC
1 A-TAACTTAC
*
35197 ATAAATTA-
1 ATAACTTAC
35205 AGTAACTTAC
1 A-TAACTTAC
35215 ATAACTTAC
1 ATAACTTAC
35224 ATAACTTAC
1 ATAACTTAC
* * *
35233 AAAAATTAA
1 ATAACTTAC
35242 ATAACTTAC
1 ATAACTTAC
* *
35251 ATAAATTAA
1 ATAACTTAC
**
35260 ATAACTGGC
1 ATAACTTAC
35269 ATAACTTAC
1 ATAACTTAC
*
35278 ATTA--TAC
1 ATAACTTAC
35285 ATAACCTT-C
1 ATAA-CTTAC
* *
35294 TTAACTGAC
1 ATAACTTAC
*
35303 ATTA--TAC
1 ATAACTTAC
* *
35310 ACAACTCAC
1 ATAACTTAC
35319 ATAA-TTA-
1 ATAACTTAC
*
35326 AT-ATTATAC
1 ATAACT-TAC
*
35335 ACAACTTAC
1 ATAACTTAC
35344 ATAA--TAC
1 ATAACTTAC
*
35351 ATTACTTAC
1 ATAACTTAC
35360 ATAACTTAC
1 ATAACTTAC
35369 ATAA
1 ATAA
35373 TACATAAAAA
Statistics
Matches: 456, Mismatches: 77, Indels: 70
0.76 0.13 0.12
Matches are distributed among these distances:
5 3 0.01
6 2 0.00
7 19 0.04
8 25 0.05
9 386 0.85
10 21 0.05
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (9 bp):
ATAACTTAC
Found at i:35360 original size:25 final size:26
Alignment explanation
Indices: 35305--35377 Score: 89
Period size: 25 Copynumber: 2.9 Consensus size: 26
35295 TAACTGACAT
* *
35305 TATACACAACTCACATAATTA-A-TAT
1 TATACACAACTTACATAA-TACATTAC
35330 TATACACAACTTACATAATACATTAC
1 TATACACAACTTACATAATACATTAC
*
35356 T-TACATAACTTACATAATACAT
1 TATACACAACTTACATAATACAT
35378 AAAAATATAT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
24 2 0.05
25 38 0.88
26 3 0.07
ACGTcount: A:0.47, C:0.21, G:0.00, T:0.33
Consensus pattern (26 bp):
TATACACAACTTACATAATACATTAC
Found at i:40896 original size:21 final size:21
Alignment explanation
Indices: 40870--40917 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
40860 CAACTTAAAA
* *
40870 CAGAGGCGGCAGCGAGGGAAG
1 CAGAGGCCGCAGCGAGAGAAG
40891 CAGAGGCCGCAGCGAGAGAAG
1 CAGAGGCCGCAGCGAGAGAAG
40912 CAGAGG
1 CAGAGG
40918 TTCAAAAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.31, C:0.21, G:0.48, T:0.00
Consensus pattern (21 bp):
CAGAGGCCGCAGCGAGAGAAG
Found at i:41384 original size:43 final size:43
Alignment explanation
Indices: 41337--41429 Score: 116
Period size: 43 Copynumber: 2.2 Consensus size: 43
41327 ATAATATAGT
*
41337 GGCGTTTGTGAAAT-AAGCGCCGCGAAAGAACACTACGTTTAGC
1 GGCGTTTGT-AAATGAAGCACCGCGAAAGAACACTACGTTTAGC
* * * **
41380 GGCGTTTGTAGATGAAGCACCGCTAAAGAACATTATTTTTAGC
1 GGCGTTTGTAAATGAAGCACCGCGAAAGAACACTACGTTTAGC
41423 GGCGTTT
1 GGCGTTT
41430 TCTACCAAGC
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 3 0.07
43 40 0.93
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (43 bp):
GGCGTTTGTAAATGAAGCACCGCGAAAGAACACTACGTTTAGC
Found at i:41454 original size:42 final size:42
Alignment explanation
Indices: 41351--41644 Score: 291
Period size: 42 Copynumber: 6.9 Consensus size: 42
41341 TTTGTGAAAT
* * * ** **
41351 AAGCGCCGCGAAAGAACACTACGTTTAGCGGCGTTTGTAGATG
1 AAGCGCCGCTAAAGAACATTACCTTTAGCGGCGTTT-TTTACC
* ** *
41394 AAGCACCGCTAAAGAACATTATTTTTAGCGGCGTTTTCTACC
1 AAGCGCCGCTAAAGAACATTACCTTTAGCGGCGTTTTTTACC
* * * *
41436 AAGCGCCGCTATAGAACATTACTTTTAACGGCGTTTTCTACC
1 AAGCGCCGCTAAAGAACATTACCTTTAGCGGCGTTTTTTACC
* * * *
41478 AAGCCCCGCTATAGAACATTACTTTTAGCGGCGTTTTTTTCC
1 AAGCGCCGCTAAAGAACATTACCTTTAGCGGCGTTTTTTACC
* * * * *
41520 TAAGCTCCGCTAAAGAACATGATCTTTAGCGGCATTTTTTCCC
1 -AAGCGCCGCTAAAGAACATTACCTTTAGCGGCGTTTTTTACC
* * * *
41563 AAGCGCCGCTAAAGAACATTATCATTAGTGGCGTTTTTTTCC
1 AAGCGCCGCTAAAGAACATTACCTTTAGCGGCGTTTTTTACC
* *
41605 TAAGCGCCGCTAAAGAACATGACCTTTAGCGGAGTTTTTT
1 -AAGCGCCGCTAAAGAACATTACCTTTAGCGGCGTTTTTT
41645 TCTGTAAGCG
Statistics
Matches: 214, Mismatches: 35, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
42 114 0.53
43 100 0.47
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (42 bp):
AAGCGCCGCTAAAGAACATTACCTTTAGCGGCGTTTTTTACC
Found at i:41470 original size:85 final size:85
Alignment explanation
Indices: 41350--41642 Score: 320
Period size: 85 Copynumber: 3.4 Consensus size: 85
41340 GTTTGTGAAA
* * * * **
41350 TAAGCGCCGCGAAAGAACACTACGTTTAGCGGCGTTTGTAGATGAAGCACCGCTAAAGAACATTA
1 TAAGCGCCGCTAAAGAACATTACTTTTAGCGGCGTTT-TATACCAAGCACCGCTAAAGAACATTA
* *
41415 TTTTTAGCGGCGTTTTCTACC
65 TTTTTAGCGGCGTTTTTTTCC
* * * * * *
41436 -AAGCGCCGCTATAGAACATTACTTTTAACGGCGTTTTCTACCAAGCCCCGCTATAGAACATTAC
1 TAAGCGCCGCTAAAGAACATTACTTTTAGCGGCGTTTTATACCAAGCACCGCTAAAGAACATTAT
41500 TTTTAGCGGCGTTTTTTTCC
66 TTTTAGCGGCGTTTTTTTCC
* * * * * *
41520 TAAGCTCCGCTAAAGAACATGA-TCTTTAGCGGCATTTTTTCCCAAGCGCCGCTAAAGAACATTA
1 TAAGCGCCGCTAAAGAACATTACT-TTTAGCGGCGTTTTATACCAAGCACCGCTAAAGAACATTA
** *
41584 TCATTAGTGGCGTTTTTTTCC
65 TTTTTAGCGGCGTTTTTTTCC
* * *
41605 TAAGCGCCGCTAAAGAACATGACCTTTAGCGGAGTTTT
1 TAAGCGCCGCTAAAGAACATTACTTTTAGCGGCGTTTT
41643 TTTCTGTAAG
Statistics
Matches: 173, Mismatches: 31, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
84 40 0.23
85 133 0.77
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (85 bp):
TAAGCGCCGCTAAAGAACATTACTTTTAGCGGCGTTTTATACCAAGCACCGCTAAAGAACATTAT
TTTTAGCGGCGTTTTTTTCC
Found at i:42880 original size:43 final size:43
Alignment explanation
Indices: 42810--43072 Score: 321
Period size: 43 Copynumber: 6.1 Consensus size: 43
42800 AATATATTTT
* * **
42810 TAAAGGTTAT-GTTTTTAGCGGCGTTTGTGATAAAAGCGCCGC
1 TAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
* * * * *
42852 TAAAGGTCATGTTCTTTAGAGGCATTTGTGGGAGAAGCGCTGC
1 TAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
* * *
42895 TAAAAGTCTTGGTCTTTAGCGGCGTTTGTGGGAGAAGCGCCGC
1 TAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
* * * *
42938 TAAAGGACTTGGTCTTTAGCGGTGTTTGTGGGAAAAGTGCCGC
1 TAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
* * *
42981 TAAAGGTCATGGTCTTTAGTGGCGTTTGTAGGAAAAGCGCCGT
1 TAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
* * *
43024 TAATGGTCTTGGTCTTTAGCGGCGTTTGTGGTAAAAGCGCCGC
1 TAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
43067 TAAAGG
1 TAAAGG
43073 CCTAAAAAAG
Statistics
Matches: 186, Mismatches: 34, Indels: 1
0.84 0.15 0.00
Matches are distributed among these distances:
42 9 0.05
43 177 0.95
ACGTcount: A:0.22, C:0.15, G:0.33, T:0.30
Consensus pattern (43 bp):
TAAAGGTCATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
Found at i:43053 original size:129 final size:129
Alignment explanation
Indices: 42823--43072 Score: 365
Period size: 129 Copynumber: 1.9 Consensus size: 129
42813 AGGTTATGTT
* * * *
42823 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGTTCTTTAGAGGCATTTGTGGGAGAA
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGAGGCATTTGTAGGAAAA
* *
42888 GCGCTGCTAAAAGTCTTGGTCTTTAGCGGCGTTTGTGGGAGAAGCGCCGCTAAAGGACTTGGTC
66 GCGCCGCTAAAAGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGACTTGGTC
* * * * *
42952 TTTAGCGGTGTTTGTGGGAAAAGTGCCGCTAAAGGTCATGGTCTTTAGTGGCGTTTGTAGGAAAA
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGAGGCATTTGTAGGAAAA
* ** *
43017 GCGCCGTTAATGGTCTTGGTCTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGG
66 GCGCCGCTAAAAGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
43073 CCTAAAAAAG
Statistics
Matches: 106, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
129 106 1.00
ACGTcount: A:0.21, C:0.16, G:0.33, T:0.30
Consensus pattern (129 bp):
TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGGTCTTTAGAGGCATTTGTAGGAAAA
GCGCCGCTAAAAGTCTTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGACTTGGTC
Found at i:49648 original size:9 final size:9
Alignment explanation
Indices: 49625--49658 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
49615 CTTATCTCTT
49625 ATTATATT-
1 ATTATATTA
49633 A-TATATTA
1 ATTATATTA
49641 ATTATATTA
1 ATTATATTA
49650 ATTATATTA
1 ATTATATTA
49659 TATTTACACA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 6 0.25
8 2 0.08
9 16 0.67
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
ATTATATTA
Found at i:51117 original size:20 final size:21
Alignment explanation
Indices: 51073--51115 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
51063 AACAACACAC
51073 TTAGTTTAATGAATAAAAAGT
1 TTAGTTTAATGAATAAAAAGT
51094 TTAGTTTAATGAATAAAAAGT
1 TTAGTTTAATGAATAAAAAGT
51115 T
1 T
51116 AGAATCTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.40
Consensus pattern (21 bp):
TTAGTTTAATGAATAAAAAGT
Found at i:56883 original size:17 final size:17
Alignment explanation
Indices: 56861--56900 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
56851 TCCTAGATTT
*
56861 TGATACCCATATCTTTC
1 TGATACCCATAACTTTC
56878 TGATACCCATAACTTTC
1 TGATACCCATAACTTTC
56895 TGATAC
1 TGATAC
56901 TCGTATATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.07, T:0.38
Consensus pattern (17 bp):
TGATACCCATAACTTTC
Found at i:73599 original size:20 final size:20
Alignment explanation
Indices: 73576--73613 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
73566 TTTTCTTTTT
73576 TTTTTGAATTTTTTTTGCGC
1 TTTTTGAATTTTTTTTGCGC
**
73596 TTTTTGCTTTTTTTTTGC
1 TTTTTGAATTTTTTTTGC
73614 TGTTTTTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.05, C:0.11, G:0.13, T:0.71
Consensus pattern (20 bp):
TTTTTGAATTTTTTTTGCGC
Found at i:77125 original size:9 final size:9
Alignment explanation
Indices: 77102--77135 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
77092 TTTATCACTT
77102 ATTATATT-
1 ATTATATTA
77110 A-TATATTA
1 ATTATATTA
77118 ATTATATTA
1 ATTATATTA
77127 ATTATATTA
1 ATTATATTA
77136 TATTTACACA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 6 0.25
8 2 0.08
9 16 0.67
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
ATTATATTA
Found at i:79570 original size:27 final size:27
Alignment explanation
Indices: 79501--79594 Score: 120
Period size: 26 Copynumber: 3.6 Consensus size: 27
79491 TCAATATTTT
*
79501 TAAAATGATCGTAATGCCCCT-TAGTG
1 TAAAATGATCGTAATGCCCCTGTAGGG
*
79527 TAAAATGATCGCAATGCCCCTGTAGGG
1 TAAAATGATCGTAATGCCCCTGTAGGG
* * *
79554 TAAAATGACCGTGATGCCCTTGTA-GG
1 TAAAATGATCGTAATGCCCCTGTAGGG
*
79580 TAAAATGATTGTAAT
1 TAAAATGATCGTAAT
79595 ACCTCTGTTA
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
26 34 0.59
27 24 0.41
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (27 bp):
TAAAATGATCGTAATGCCCCTGTAGGG
Found at i:79691 original size:24 final size:24
Alignment explanation
Indices: 79660--79793 Score: 123
Period size: 24 Copynumber: 5.6 Consensus size: 24
79650 CCTTCGAGGT
* *
79660 TAAATGATTGATTTATCTGTGATG
1 TAAATGACTGATTTGTCTGTGATG
* * * *
79684 TAAGTGATTAATTTGTCTGAGATG
1 TAAATGACTGATTTGTCTGTGATG
* *
79708 TAAATGACTGATTTGTCTGTAATT
1 TAAATGACTGATTTGTCTGTGATG
*
79732 TAAATGACTGATTTGTTTGTGATTGG
1 TAAATGACTGATTTGTCTGTGA-T-G
79758 T--ATGACTGATTTGTCTGTGAATTG
1 TAAATGACTGATTTGTCTGTG-A-TG
79782 T--ATGACTGATTT
1 TAAATGACTGATTT
79794 TGTGCATGGC
Statistics
Matches: 93, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
24 88 0.95
25 4 0.04
26 1 0.01
ACGTcount: A:0.26, C:0.06, G:0.22, T:0.46
Consensus pattern (24 bp):
TAAATGACTGATTTGTCTGTGATG
Found at i:79924 original size:26 final size:26
Alignment explanation
Indices: 79895--79960 Score: 114
Period size: 26 Copynumber: 2.5 Consensus size: 26
79885 TGTTACTGGT
*
79895 AGCTTTGCTACGGTACTATTGTTGGC
1 AGCTTTGCTACGATACTATTGTTGGC
79921 AGCTTTGCTACGATACTATTGTTGGC
1 AGCTTTGCTACGATACTATTGTTGGC
*
79947 AGCTTTGCTGCGAT
1 AGCTTTGCTACGAT
79961 GCTACTAATG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.17, C:0.20, G:0.26, T:0.38
Consensus pattern (26 bp):
AGCTTTGCTACGATACTATTGTTGGC
Found at i:79972 original size:26 final size:26
Alignment explanation
Indices: 79895--79972 Score: 75
Period size: 26 Copynumber: 3.0 Consensus size: 26
79885 TGTTACTGGT
* * **
79895 AGCTTTGCTACGGTACTATTGTTGGC
1 AGCTTTGCTACGATACTACTAATGGC
* **
79921 AGCTTTGCTACGATACTATTGTTGGC
1 AGCTTTGCTACGATACTACTAATGGC
* *
79947 AGCTTTGCTGCGATGCTACTAATGGC
1 AGCTTTGCTACGATACTACTAATGGC
79973 TTTGTGCCGA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.18, C:0.21, G:0.26, T:0.36
Consensus pattern (26 bp):
AGCTTTGCTACGATACTACTAATGGC
Found at i:80088 original size:32 final size:32
Alignment explanation
Indices: 79962--80088 Score: 166
Period size: 32 Copynumber: 4.0 Consensus size: 32
79952 TGCTGCGATG
* **
79962 CTACTAATGGCTTTGTGCCGATCATATTACCG
1 CTACTGATGGCTTTGTGCCGATCATATTACTA
* * * *
79994 TTACT-ATAGGCTGTGTGCCGATCATATCACTT
1 CTACTGAT-GGCTTTGTGCCGATCATATTACTA
80026 CTACTGATGGCTTTGTGCCGATCATATTACTA
1 CTACTGATGGCTTTGTGCCGATCATATTACTA
*
80058 CTACTGATGGCTTTGTGCCAATCATATTACT
1 CTACTGATGGCTTTGTGCCGATCATATTACT
80089 GTACTTATGG
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
31 2 0.02
32 79 0.95
33 2 0.02
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (32 bp):
CTACTGATGGCTTTGTGCCGATCATATTACTA
Found at i:89069 original size:19 final size:19
Alignment explanation
Indices: 89045--89107 Score: 99
Period size: 19 Copynumber: 3.2 Consensus size: 19
89035 CCAAACATCC
89045 TAAATATCATCTAAGTACT
1 TAAATATCATCTAAGTACT
89064 TAAATATCATCTAAGTACT
1 TAAATATCATCTAAGTACT
*
89083 TATATAAATCATCTAAGTACT
1 TA-A-ATATCATCTAAGTACT
89104 TAAA
1 TAAA
89108 AAGTATTAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
19 22 0.54
20 2 0.05
21 17 0.41
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.37
Consensus pattern (19 bp):
TAAATATCATCTAAGTACT
Found at i:91623 original size:40 final size:40
Alignment explanation
Indices: 91574--91657 Score: 123
Period size: 40 Copynumber: 2.1 Consensus size: 40
91564 GGCGCTTGGA
*
91574 TAAAAAACGCCGCTAAAAATCAAGCATTAACGACGCTTTT
1 TAAAAAACGCCACTAAAAATCAAGCATTAACGACGCTTTT
* * * *
91614 TAAAAAACGCCACTAAAGATCAAGTATTAGCGGCGCTTTT
1 TAAAAAACGCCACTAAAAATCAAGCATTAACGACGCTTTT
91654 TAAA
1 TAAA
91658 TGAGCATTAA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.42, C:0.20, G:0.14, T:0.24
Consensus pattern (40 bp):
TAAAAAACGCCACTAAAAATCAAGCATTAACGACGCTTTT
Found at i:91795 original size:41 final size:39
Alignment explanation
Indices: 91735--91850 Score: 135
Period size: 41 Copynumber: 2.8 Consensus size: 39
91725 TTTTGAGGCA
* * *
91735 TTAGCGGTGATTTTGAAAAAGCGTCGCTAATG-TTCAGGGTT
1 TTAGCGGCG-TTTTTAAAAAGCG-CGCTAATGCTT-AGGGCT
91776 TTAGCGGCGTTTTTTAAAAAGCGCTGCTAATGCTTAGGGCT
1 TTAGCGGCG-TTTTTAAAAAGCGC-GCTAATGCTTAGGGCT
91817 TTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGCT
1 TTAGCGGCGTTTTTAAA-AAGCG-CGCTAATGCT
91851 NNNNNNNNNN
Statistics
Matches: 67, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
40 9 0.13
41 55 0.82
42 3 0.04
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (39 bp):
TTAGCGGCGTTTTTAAAAAGCGCGCTAATGCTTAGGGCT
Found at i:102336 original size:16 final size:14
Alignment explanation
Indices: 102315--102348 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 14
102305 TACAAGTACC
102315 TTTTATTATTTATTAT
1 TTTTATTA-TTATT-T
102331 TTTTATTATTATTT
1 TTTTATTATTATTT
102345 TTTT
1 TTTT
102349 CTAAAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.28
15 5 0.28
16 8 0.44
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTTATTATTATTT
Found at i:102985 original size:43 final size:43
Alignment explanation
Indices: 102936--103271 Score: 458
Period size: 43 Copynumber: 7.8 Consensus size: 43
102926 AAAGGTTTAT
** *
102936 TCTTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGT
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGG
* * *
102979 TCTTTAGAGGCGTTTGTGGGAAAATCGCCGCTAAAGGTCATAG
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGG
*
103022 TCTTTAGCGGCGTTTGT-GGAAGAAGCGCCGCTAAAGGTCTTGG
1 TCTTTAGCGGCGTTTGTGGGAA-AAGCGCCGCTAAAGGTCATGG
** * * **
103065 TCTTTAGCGGCGTTTGCAGGAGAAGCACCGCTAAAGGTTTTGG
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGG
*
103108 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGGTCATGG
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGG
* *
103151 TCTTTAGCGACGTTTGTGGGAAAAGCGCCGTTAAAGGTCATGG
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGG
*
103194 TCTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCATGG
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGG
* * * * *
103237 GCTTCAGCGGCGTTTGTTGGAATAGCGTCGCTAAA
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAA
103272 TTTCTTTAGC
Statistics
Matches: 258, Mismatches: 33, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
42 4 0.02
43 251 0.97
44 3 0.01
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.28
Consensus pattern (43 bp):
TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGG
Found at i:107819 original size:20 final size:21
Alignment explanation
Indices: 107775--107817 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
107765 AACAACTCAC
*
107775 TTAGTTTAATGAATAAAAAGT
1 TTAGTTTAATCAATAAAAAGT
107796 TTAGTTTAATCAATAAAAAGT
1 TTAGTTTAATCAATAAAAAGT
107817 T
1 T
107818 AGAATCTCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.47, C:0.02, G:0.12, T:0.40
Consensus pattern (21 bp):
TTAGTTTAATCAATAAAAAGT
Found at i:115350 original size:10 final size:10
Alignment explanation
Indices: 115335--115364 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
115325 CATATCACCT
115335 ATTTATATTC
1 ATTTATATTC
115345 ATTTATATTC
1 ATTTATATTC
115355 ATTTGATATT
1 ATTT-ATATT
115365 TTACATGTCG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 14 0.74
11 5 0.26
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (10 bp):
ATTTATATTC
Found at i:119639 original size:10 final size:10
Alignment explanation
Indices: 119624--119662 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
119614 TTTCAAAAAC
119624 AAAAAGAAAG
1 AAAAAGAAAG
119634 AAAAAGAAAG
1 AAAAAGAAAG
119644 AAAAAGGAAA-
1 AAAAA-GAAAG
119654 AAAAAGAAA
1 AAAAAGAAA
119663 AAGGAGAGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 4 0.14
10 20 0.71
11 4 0.14
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (10 bp):
AAAAAGAAAG
Found at i:119664 original size:10 final size:10
Alignment explanation
Indices: 119619--119664 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
119609 AAATTTTTCA
119619 AAAACAAAAAG
1 AAAA-AAAAAG
*
119630 AAAGAAAAAG
1 AAAAAAAAAG
*
119640 AAAGAAAAAG
1 AAAAAAAAAG
*
119650 GAAAAAAAAG
1 AAAAAAAAAG
119660 AAAAA
1 AAAAA
119665 GGAGAGGCCA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
10 28 0.90
11 3 0.10
ACGTcount: A:0.83, C:0.02, G:0.15, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:119666 original size:16 final size:17
Alignment explanation
Indices: 119633--119667 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
119623 CAAAAAGAAA
119633 GAAAAAGAAAGAAAAAG
1 GAAAAAGAAAGAAAAAG
119650 GAAAAA-AAAGAAAAAG
1 GAAAAAGAAAGAAAAAG
119666 GA
1 GA
119668 GAGGCCAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (17 bp):
GAAAAAGAAAGAAAAAG
Found at i:121110 original size:132 final size:133
Alignment explanation
Indices: 120888--121336 Score: 699
Period size: 132 Copynumber: 3.4 Consensus size: 133
120878 AGCCCTGTTT
*
120888 CTCTGAGCAGCAGTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAG
1 CTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAG
* * * *
120953 ATCGAAGA-CGACAAGTCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTG
66 ATCAAAGATAG-CAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACAAAGCCTTG
121017 TCTC
130 TCTC
** *
121021 CT-TGAGCAGCAGCGGAGTTGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCTG
1 CTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAG
* * * * *
121085 ATCAAAGATAGCAAATCTTATCTTTCTAAGATAGTGGAAAGCAGATTTAAGCCGCAAAGTCGTGT
66 ATCAAAGATAGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACAAAGCCTTGT
121150 CT-
131 CTC
* * *
121152 CTTTGAGCAGCAGCAGAGAAGGTTGAAGATTGTAGACCTTATCTCCCTAAGCAGTAGTGGAGCAG
1 CTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAG
*
121217 ATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACAAAGCCTTGT
66 ATCAAAGATAGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACAAAGCCTTGT
121282 CT-
131 CTC
*
121284 CTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTACATCTTATCTCCCTAAGCA
1 CTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
121337 NNNNNNNNNN
Statistics
Matches: 286, Mismatches: 28, Indels: 5
0.90 0.09 0.02
Matches are distributed among these distances:
131 2 0.01
132 281 0.98
133 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (133 bp):
CTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAG
ATCAAAGATAGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACAAAGCCTTGT
CTC
Found at i:121237 original size:44 final size:44
Alignment explanation
Indices: 121055--121239 Score: 106
Period size: 44 Copynumber: 4.2 Consensus size: 44
121045 AAGATTGTAG
*
121055 ATCTTATCTCCCTAAGCAGTAGTGGAGCTGATCAAAGATAGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATAGCAA
** ** **
121099 ATCTTATCTTTCTAAG-A-TAGTGGAAAGCAGATTTAAG-CCGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGG--AGCAGATCAAAGATAGCAA
* * ** * * ** * * ** * * *
121142 AGTCGTGTCTCTTTGAGCAGCAGCAGAGAAGGTTGAAGATTGTAG
1 A-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATAGCAA
* *
121187 ACCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATAGCAA
121231 ATCTTATCT
1 ATCTTATCT
121240 TTCCAAGATA
Statistics
Matches: 96, Mismatches: 39, Indels: 12
0.65 0.27 0.08
Matches are distributed among these distances:
42 6 0.06
43 6 0.06
44 77 0.80
45 4 0.04
46 3 0.03
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATAGCAA
Found at i:123339 original size:132 final size:132
Alignment explanation
Indices: 121534--123332 Score: 2811
Period size: 132 Copynumber: 13.6 Consensus size: 132
121524 NNNNNNNNNN
* * *
121534 AAAGCCTTGTCTCTCTGAGTAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTATGCC
1 AAAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
* *
121599 GTAGTGGAGCAGATCAAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
66 GTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
*
121664 AT
131 AC
* * * *
121666 AAAGCCTTGTCTCTCTGAGCAG-TGACGGAGTAGGTTAAAGATTGTAGAGCTTATCTCCCTAAGC
1 AAAGCCTTGTCTCTCTGAGCAGCAG-CGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGC
* *
121730 AGTAGTGGAGCAGATCAAAGATGGTAAATCTTATCTTTCCAAGATAGTGGAAAGCAGATTTAAGC
65 AGTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
*
121795 CAA
130 CAC
* * * *
121798 AAAGCATCGTCTCTCTGAGCAGCAGCGGAGATGGTTGAAGATTGTAGATCTTACCTCCCTAAGCA
1 AAAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
*
121863 ATAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
66 GTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
*
121928 AA
131 AC
* **
121930 AAAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTCAAGATTGTAGATCTTATCGACCTAAGCA
1 AAAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
* * * *
121995 -TAGCGGAGTAGATCAAAGATGGCAAATCTTATC-TTCCAAAGATAGTGGGAAGCAAATTTAGGC
66 GTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCC-AAGATAGTGGGAAGCAGATTTAAGC
122058 CAC
130 CAC
*
122061 AAAGCCTTGTCTCTCTGAGTAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
1 AAAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
122126 GTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
66 GTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
122191 GA-
131 -AC
* * **
122193 AAAGCCTTGTCTCTCTGAGCAGCAGTGGAGAAGGTTCAAGATTGTAGATCTTATCGACCTAAGCA
1 AAAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
* * *
122258 -TAGCGGAGCAGATCAAAGATGGCAAATCTTATC-TTCCAAAGATAGTGGGAAGCAAATTTAGGC
66 GTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCC-AAGATAGTGGGAAGCAGATTTAAGC
122321 CAC
130 CAC
* *
122324 AAAGCCTTGTCTCACTGAGTAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
1 AAAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
* * *
122389 GTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
66 GTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
122454 AC
131 AC
* * * * *
122456 CAAGCCTTGTCTCCCTGAGCAGTAGCGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
1 AAAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
122521 GTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
66 GTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
*
122586 AT
131 AC
* * * * *
122588 GAAGCCTTGTTTCTCTGAGCAGTAACGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
1 AAAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
* *
122653 GTAGTGGAGCAGATCAAAGATGGTAAATCTTATCTTTCCAAGATAGTGGAAAGCAGATTTAAGCC
66 GTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
*
122718 AA
131 AC
122720 AAAGCCTTGTCTCTCTGAGCAGCA-CTGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGC
1 AAAGCCTTGTCTCTCTGAGCAGCAGC-GGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGC
**
122784 AGTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCGGAGATAGTGGGAAGCAGATTTAAGC
65 AGTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
*
122849 CAG
130 CAC
* *
122852 AAAGCCTTGTCTCTCTTAGCAGTAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
1 AAAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
*
122917 GTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCGAAGATAGTGGGAAGCAGATTTAAGCC
66 GTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
122982 AC
131 AC
* *
122984 AAAGCCTTGTCTCTCTGAGTAGCAGCGCAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
1 AAAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
* * *
123049 GTAGTGGAGCAGATCAAAGATGCCAAATCTTATCTTTCCAAGATAGTGGGAAGCATATTTAAGCT
66 GTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
*
123114 AG
131 AC
* * *
123116 AAAGCCTTGTCTCTCTTAGCAGTAGCGGAAAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
1 AAAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
* * *
123181 GTAGTTGAGCAGATCAAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
66 GTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
123246 AC
131 AC
* * * * *
123248 CAAGCCTTGTCTCTCTGAGCAGTAGCGGAGTAGGATGAAAATTGTAGATCTTATCTCCCTAAGCA
1 AAAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
*
123313 GTAGTGGAGTAGATCAAAGA
66 GTAGTGGAGCAGATCAAAGA
123333 CGACAAA
Statistics
Matches: 1533, Mismatches: 122, Indels: 24
0.91 0.07 0.01
Matches are distributed among these distances:
130 9 0.01
131 234 0.15
132 1279 0.83
133 11 0.01
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.26
Consensus pattern (132 bp):
AAAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
GTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
AC
Done.