Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_223 ID=scaffold_223-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9191
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:5671 original size:22 final size:21

Alignment explanation


    Indices: 5633--5674  Score: 61
    Period size: 20  Copynumber: 2.0  Consensus size: 21

       5623 ATTTATACTA

                                 
       5633 ATATTATACACACATATATAT
          1 ATATTATACACACATATATAT

                                  
       5654 ATATCTATACA-AC-TATATAT
          1 ATAT-TATACACACATATATAT

             
       5674 A
          1 A

       5675 AAAGGTGTTC


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  20    8  0.40
  21    6  0.30
  22    6  0.30

ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38


Consensus pattern (21 bp):   
ATATTATACACACATATATAT
Done.