Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_225 ID=scaffold_225-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9282
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.32

Warning! 100 characters in sequence are not A, C, G, or T


Found at i:4485 original size:32 final size:32

Alignment explanation


    Indices: 4444--4507  Score: 119
    Period size: 32  Copynumber: 2.0  Consensus size: 32

       4434 TTCCTTTCAT

                                     *      
       4444 GCGGTTTTAACTATCTTGAAGCATATGCTATA
          1 GCGGTTTTAACTATCTTGAAGCATAGGCTATA

                                            
       4476 GCGGTTTTAACTATCTTGAAGCATAGGCTATA
          1 GCGGTTTTAACTATCTTGAAGCATAGGCTATA

       4508 ACTTTGCCTT


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  32   31  1.00

ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36


Consensus pattern (32 bp):   
GCGGTTTTAACTATCTTGAAGCATAGGCTATA
Done.