Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold_24 ID=scaffold_24-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  80187

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8651--8694
20
2.2
20
91
0
70
13
0
43
43
1.44
11539--11635
42
2.3
42
82
3
115
18
34
26
20
1.96
15236--15276
21
2.0
20
85
4
55
41
0
4
53
1.22
16179--16204
2
13.0
2
100
0
52
50
0
0
50
1.00
18779--18852
38
1.9
38
83
0
94
22
18
16
41
1.89
20718--20751
18
1.9
17
88
5
50
47
17
5
29
1.71
21784--21860
23
3.5
22
75
16
61
29
2
3
63
1.25
22156--22188
12
2.8
12
90
4
50
39
3
0
57
1.14
25487--25527
20
2.0
20
95
0
73
9
0
46
43
1.36
30402--30440
3
13.0
3
100
0
78
33
0
0
66
0.92
30756--30788
17
1.9
17
93
0
57
33
3
9
54
1.47
30910--30987
35
2.2
33
77
16
77
30
7
3
57
1.45
33161--33322
44
3.7
43
76
14
134
27
24
19
29
1.98
34202--34257
25
2.1
27
87
9
80
62
10
10
16
1.54
41550--41595
24
1.9
24
86
0
65
13
26
15
45
1.82
51196--51256
30
2.0
30
100
0
122
40
3
22
32
1.70
56981--57030
15
3.4
15
70
25
52
48
6
22
24
1.73
56979--57036
29
2.0
29
100
0
116
48
6
24
20
1.74
59369--59631
53
4.9
53
82
1
303
36
13
23
26
1.92
59369--59628
106
2.5
106
87
1
360
36
13
23
26
1.92
62622--62894
41
6.6
40
79
7
285
22
16
26
34
1.95
62662--62899
84
2.8
83
94
2
413
21
16
27
34
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62621--62942
125
2.6
124
81
9
341
22
17
26
33
1.96
64058--64094
17
2.3
16
90
9
58
21
0
24
54
1.45
73622--73750
28
4.5
28
86
1
132
30
15
20
33
1.94

Tables:   1

The End!