Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_241 ID=scaffold_241-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9051
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32


Found at i:1581 original size:10 final size:10

Alignment explanation


    Indices: 1566--1597  Score: 55
    Period size: 10  Copynumber: 3.2  Consensus size: 10

       1556 CTCTTATTTC

                      
       1566 TCTTTTTTTT
          1 TCTTTTTTTT

                      
       1576 TCTTTTTTTT
          1 TCTTTTTTTT

                  *   
       1586 TCTTTTCTTT
          1 TCTTTTTTTT

              
       1596 TC
          1 TC

       1598 AAGAGTAGAT


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  10   21  1.00

ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84


Consensus pattern (10 bp):   
TCTTTTTTTT
Done.