Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold_26 ID=scaffold_26-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  71148

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
235--271
18
2.1
18
94
0
65
8
0
45
45
1.32
1098--1310
106
2.0
106
91
1
347
26
23
18
30
1.98
3392--3437
7
6.7
7
78
14
51
0
17
0
82
0.67
3402--3432
16
1.9
16
93
0
53
0
19
0
80
0.71
3391--3435
21
2.3
19
88
7
63
0
20
0
80
0.72
7992--8047
22
2.5
22
88
0
94
58
1
7
32
1.35
8773--8815
21
2.2
19
83
8
50
16
4
2
76
1.05
9280--9316
18
2.1
18
94
0
65
8
0
45
45
1.32
17015--17060
21
2.2
21
84
0
56
21
19
41
17
1.90
24970--25001
17
2.0
17
88
11
50
62
15
21
0
1.32
30704--30740
18
2.1
18
94
0
65
8
0
45
45
1.32
31155--31547
207
1.9
208
91
1
655
26
26
17
29
1.97
31485--31635
44
3.4
44
79
7
164
27
25
17
29
1.98
31567--31779
106
2.0
106
92
1
356
27
24
18
30
1.98
31705--32012
44
7.0
42
68
16
119
27
20
18
32
1.97
33860--33902
19
2.3
19
88
8
61
0
20
0
79
0.74
40158--40194
18
2.1
18
94
0
65
8
0
45
45
1.32
43856--43972
62
1.9
59
86
5
162
51
2
4
41
1.35
45646--45670
13
1.9
13
100
0
50
36
16
0
48
1.46
47434--47460
14
1.9
14
100
0
54
22
33
14
29
1.94
52282--52322
12
3.4
12
89
0
64
29
51
7
12
1.66
52436--52488
26
2.0
26
100
0
106
7
11
11
69
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53275--53372
3
32.7
3
89
0
151
32
2
0
65
1.04
53499--53531
12
2.5
14
90
9
52
42
12
0
45
1.41
54080--54383
109
2.8
108
89
2
423
31
18
17
32
1.94
55888--55932
19
2.2
21
80
7
58
48
13
22
15
1.79
58431--58506
37
2.0
39
84
5
102
73
5
13
7
1.22
62768--63006
50
4.8
49
66
5
120
31
21
22
24
1.98
62768--63038
100
2.7
101
86
5
363
32
21
20
25
1.97
62932--63169
125
1.9
125
85
3
327
34
21
18
26
1.95
63297--63753
129
3.5
129
86
1
621
29
20
22
27
1.98
63339--63750
85
4.8
85
70
13
263
30
20
21
26
1.98
63294--63753
44
10.7
44
69
12
249
30
20
22
26
1.98
64229--64269
12
3.4
12
89
0
64
29
51
7
12
1.66
64383--64435
26
2.0
26
100
0
106
7
11
11
69
1.35
65185--65242
17
3.6
16
75
15
66
24
10
6
58
1.55
65185--65254
31
2.3
31
100
0
140
25
8
5
60
1.49
65257--65399
3
47.7
3
87
2
198
32
3
0
62
1.17
66112--66404
108
2.7
108
89
4
423
30
18
17
32
1.95

Tables:   1

The End!