Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_256 ID=scaffold_256-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10857
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.27

Warning! 1967 characters in sequence are not A, C, G, or T


Found at i:9745 original size:38 final size:38

Alignment explanation


    Indices: 9689--9762  Score: 105
    Period size: 38  Copynumber: 1.9  Consensus size: 38

       9679 GTCACTAATG

                *               *                  
       9689 TTATTGAAAAGTGACAAATCTGTCAC-CTATTAACATCA
          1 TTATCGAAAAGTGACAAATCAGTCACTC-ATTAACATCA

                        *                       
       9727 TTATCGAAAAGTTACAAATCAGTCACTCATTAACAT
          1 TTATCGAAAAGTGACAAATCAGTCACTCATTAACAT

       9763 TTTCAACTAC


Statistics
Matches: 32,  Mismatches: 3, Indels: 2
        0.86            0.08        0.05

Matches are distributed among these distances:
  38   31  0.97
  39    1  0.03

ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31


Consensus pattern (38 bp):   
TTATCGAAAAGTGACAAATCAGTCACTCATTAACATCA
Done.