Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold_264 ID=scaffold_264-JGI_221_v2.0

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8832
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32


Found at i:1502 original size:18 final size:18

Alignment explanation


    Indices: 1475--1521  Score: 76
    Period size: 18  Copynumber: 2.6  Consensus size: 18

       1465 AAATTAAATG

                 *            
       1475 ATTTAATAATAATAATCA
          1 ATTTATTAATAATAATCA

                              
       1493 ATTTATTAATAATAATCA
          1 ATTTATTAATAATAATCA

                       
       1511 ATTTATATAAT
          1 ATTTAT-TAAT

       1522 TACCTAATCA


Statistics
Matches: 27,  Mismatches: 1, Indels: 1
        0.93            0.03        0.03

Matches are distributed among these distances:
  18   23  0.85
  19    4  0.15

ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45


Consensus pattern (18 bp):   
ATTTATTAATAATAATCA

Found at i:1729 original size:17 final size:17

Alignment explanation


    Indices: 1707--1740  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       1697 TTAAGTCCAA

                             
       1707 GATTCATAGTATAATGT
          1 GATTCATAGTATAATGT

                             
       1724 GATTCATAGTATAATGT
          1 GATTCATAGTATAATGT

       1741 CTCACATATA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.35, C:0.06, G:0.18, T:0.41


Consensus pattern (17 bp):   
GATTCATAGTATAATGT
Done.