Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_269 ID=scaffold_269-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8781
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Found at i:1533 original size:50 final size:49
Alignment explanation
Indices: 1367--2135 Score: 312
Period size: 50 Copynumber: 15.5 Consensus size: 49
1357 ACTGCAACCT
* ** * * *
1367 CAGGGAAGTAAGATTCGCCGTCATAGCTTCAATCTGCTCCACTACACCGC
1 CAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGATCCACTGCA-TGC
* ** * * ** ** * *
1417 CAAGGAAAGTAAGATTTGCCGTTGTGGCTTCGATCTCTTTAATTGCAATGT
1 C-AGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGATCCACTGC-ATGC
* * *
1468 CGGGGAA-CAAGATTCACCGTTGTAGCTTAAATCTGATCCACTGCATCGC
1 CAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGATCCACTGCAT-GC
* * * * ** * *
1517 CAGGAAAGTAAGATTCACTGTTG-CGACTTCAATCT-TTTTAATGCAATAC
1 CAGGGAAGTAAGATTCACCGTTGTAG-CTTCAATCTGATCCACTGC-ATGC
* * * ** * * * *
1566 TAGGGAAGCAAGATTCACTGTCATAGCTTTAATCTGCTCCGCTGTATTGC
1 CAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGATCCACTGCA-TGC
* * * * ** ** * * *
1616 CAGGGAAGTGAGATTCGCCGTTGTGGCTTCAATATCTTTAAATGTAATGT
1 CAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGATCCACTG-CATGC
*
1666 CAGGGAA-CAAGATTCACCGTTGTAGCTTCAATCTGATCCACTGCATCGC
1 CAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGATCCACTGCAT-GC
* * * ** ** * *
1715 CAGGAAAGTAAGATTCACTGTTG-CGACTTCAATCTTTTTAATTGCAATAC
1 CAGGGAAGTAAGATTCACCGTTGTAG-CTTCAATCTGATCCACTGC-ATGC
* * * * **
1765 CAGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTATACTGC
1 CAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGATCCACTGCA-TGC
* * * ** ** * *
1815 CAGGGAAGTGAGATTCGCCGTTGTGGCTTCAATCTCTTTAAAAT-CAATGT
1 CAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCT-GATCCACTGC-ATGC
* * * * *
1865 CGGGGAA-CAAGATCCGCCGTTGTAGCTTCAATCTGATCCACTACATCGC
1 CAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGATCCACTGCAT-GC
* * ** ** ** * *
1914 TAGGAAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTTAATTGCAATAC
1 CAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGATCCACTGC-ATGC
* * * ** * * * *
1964 TAGGGAAGCAAGATTCACTGTCATAGCTTTAATCTGCTCCGCTGTATTGC
1 CAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGATCCACTGCA-TGC
* * * * ** ** * * *
2014 CAGGGAAGTGAGATTCGCCGTTGTGGCTTCAATATCTTTAAATGTAATGT
1 CAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGATCCACTG-CATGC
*
2064 CAGGGAA-CAAGATTCACCGTTGTAGCTTCAATCTGATCCACTGCATCGC
1 CAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGATCCACTGCAT-GC
* *
2113 CAGGAAAGTAAGATTCGCCGTTG
1 CAGGGAAGTAAGATTCACCGTTG
2136 CGGTTTCAAT
Statistics
Matches: 498, Mismatches: 195, Indels: 52
0.67 0.26 0.07
Matches are distributed among these distances:
48 11 0.02
49 164 0.33
50 277 0.56
51 45 0.09
52 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (49 bp):
CAGGGAAGTAAGATTCACCGTTGTAGCTTCAATCTGATCCACTGCATGC
Found at i:1582 original size:99 final size:100
Alignment explanation
Indices: 1359--2191 Score: 880
Period size: 99 Copynumber: 8.4 Consensus size: 100
1349 TATGTTCTAC
* * * * * * *
1359 TGCAACCTCAGGGAAGTAAGATTCGCCGTCATAGCTTCAATCTGCTCCACTACACCGCCAAGGAA
1 TGCAATCTCAGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGATCCACTGCATCGCC-AGGAA
* * * *
1424 AGTAAGATTTGCCGTTGTGGCTTCGATCTCTTTAAT
65 AGTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* * * *
1460 TGCAATGTCGGGGAA-CAAGATTCACCGTTGTAGCTTAAATCTGATCCACTGCATCGCCAGGAAA
1 TGCAATCTCAGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGATCCACTGCATCGCCAGGAAA
* * *
1524 GTAAGATTCACTGTTGCGACTTCAATCTTTTTAA-
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* * * * * * * *
1558 TGCAATACT-AGGGAAGCAAGATTCACTGTCATAGCTTTAATCTGCTCCGCTGTATTGCCAGGGA
1 TGCAAT-CTCAGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGATCCACTGCATCGCCAGGAA
* * * * *
1622 AGTGAGATTCGCCGTTGTGGCTTCAATATCTTTAAA
65 AGTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* * *
1658 TGTAATGTCAGGGAA-CAAGATTCACCGTTGTAGCTTCAATCTGATCCACTGCATCGCCAGGAAA
1 TGCAATCTCAGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGATCCACTGCATCGCCAGGAAA
* * *
1722 GTAAGATTCACTGTTGCGACTTCAATCTTTTTAAT
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* *
1757 TGCAATAC-CAGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCACT--ATACTGCCAGG
1 TGCAAT-CTCAGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGATCCACTGCAT-C-GCCAGG
* * * * *
1819 GAAGTGAGATTCGCCGTTGTGGCTTCAATCTCTTTAAAA
63 AAAGTAAGATTCGCCGTTGCGGCTTCAATCT-TTTTAAT
* * * * * * *
1858 T-CAATGTCGGGGAA-CAAGATCCGCCGTTGTAGCTTCAATCTGATCCACTACATCGCTAGGAAA
1 TGCAATCTCAGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGATCCACTGCATCGCCAGGAAA
*
1921 GTAAGATTCACCGTTGCGGCTTCAATCTTTTTAAT
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* * * * * * * *
1956 TGCAATACT-AGGGAAGCAAGATTCACTGTCATAGCTTTAATCTGCTCCGCTGTATTGCCAGGGA
1 TGCAAT-CTCAGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGATCCACTGCATCGCCAGGAA
* * * * *
2020 AGTGAGATTCGCCGTTGTGGCTTCAATATCTTTAAA
65 AGTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
* * *
2056 TGTAATGTCAGGGAA-CAAGATTCACCGTTGTAGCTTCAATCTGATCCACTGCATCGCCAGGAAA
1 TGCAATCTCAGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGATCCACTGCATCGCCAGGAAA
*
2120 GTAAGATTCGCCGTTGCGGTTTCAATCTTTTTAAT
66 GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
*
2155 TGCAATAC-CAGGGAAGCAAGATTCGCCGTCGTAGCTT
1 TGCAAT-CTCAGGGAAGCAAGATTCACCGTCGTAGCTT
2192 TGGTCTGCTC
Statistics
Matches: 590, Mismatches: 124, Indels: 37
0.79 0.17 0.05
Matches are distributed among these distances:
98 19 0.03
99 335 0.57
100 216 0.37
101 20 0.03
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (100 bp):
TGCAATCTCAGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGATCCACTGCATCGCCAGGAAA
GTAAGATTCGCCGTTGCGGCTTCAATCTTTTTAAT
Found at i:1873 original size:199 final size:199
Alignment explanation
Indices: 1367--2220 Score: 1298
Period size: 199 Copynumber: 4.3 Consensus size: 199
1357 ACTGCAACCT
* * * ** * * *
1367 CAGGGAAGTAAGATTCGCCGTCATAGCTTCAATCTGCTCCACTACACCGCCAAGGAAAGTAAGAT
1 CAGGGAAGCAAGATTCACCGTCATAGCTTTAATCTGCTCCACTGTACTGCC-AGGGAAGTGAGAT
* * * * * *
1432 TTGCCGTTGTGGCTTCGATCTCTTTAATTGCAATGTCGGGGAACAAGATTCACCGTTGTAGCTTA
65 TCGCCGTTGTGGCTTCAATATCTTTAAATGCAATGTCAGGGAACAAGATTCACCGTTGTAGCTTC
*
1497 AATCTGATCCACTGCATCGCCAGGAAAGTAAGATTCACTGTTGCGACTTCAATCTTTTTAA-TGC
130 AATCTGATCCACTGCATCGCCAGGAAAGTAAGATTCACCGTTGCGACTTCAATCTTTTTAATTGC
1561 AATAC
195 AATAC
* * * *
1566 TAGGGAAGCAAGATTCACTGTCATAGCTTTAATCTGCTCCGCTGTATTGCCAGGGAAGTGAGATT
1 CAGGGAAGCAAGATTCACCGTCATAGCTTTAATCTGCTCCACTGTACTGCCAGGGAAGTGAGATT
*
1631 CGCCGTTGTGGCTTCAATATCTTTAAATGTAATGTCAGGGAACAAGATTCACCGTTGTAGCTTCA
66 CGCCGTTGTGGCTTCAATATCTTTAAATGCAATGTCAGGGAACAAGATTCACCGTTGTAGCTTCA
*
1696 ATCTGATCCACTGCATCGCCAGGAAAGTAAGATTCACTGTTGCGACTTCAATCTTTTTAATTGCA
131 ATCTGATCCACTGCATCGCCAGGAAAGTAAGATTCACCGTTGCGACTTCAATCTTTTTAATTGCA
1761 ATAC
196 ATAC
* *
1765 CAGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTATACTGCCAGGGAAGTGAGATT
1 CAGGGAAGCAAGATTCACCGTCATAGCTTTAATCTGCTCCACTGTACTGCCAGGGAAGTGAGATT
* * * *
1830 CGCCGTTGTGGCTTCAATCTCTTTAAAAT-CAATGTCGGGGAACAAGATCCGCCGTTGTAGCTTC
66 CGCCGTTGTGGCTTCAATATCTTT-AAATGCAATGTCAGGGAACAAGATTCACCGTTGTAGCTTC
* * *
1894 AATCTGATCCACTACATCGCTAGGAAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTTAATTGC
130 AATCTGATCCACTGCATCGCCAGGAAAGTAAGATTCACCGTTGCGACTTCAATCTTTTTAATTGC
1959 AATAC
195 AATAC
* * * *
1964 TAGGGAAGCAAGATTCACTGTCATAGCTTTAATCTGCTCCGCTGTATTGCCAGGGAAGTGAGATT
1 CAGGGAAGCAAGATTCACCGTCATAGCTTTAATCTGCTCCACTGTACTGCCAGGGAAGTGAGATT
*
2029 CGCCGTTGTGGCTTCAATATCTTTAAATGTAATGTCAGGGAACAAGATTCACCGTTGTAGCTTCA
66 CGCCGTTGTGGCTTCAATATCTTTAAATGCAATGTCAGGGAACAAGATTCACCGTTGTAGCTTCA
* **
2094 ATCTGATCCACTGCATCGCCAGGAAAGTAAGATTCGCCGTTGCGGTTTCAATCTTTTTAATTGCA
131 ATCTGATCCACTGCATCGCCAGGAAAGTAAGATTCACCGTTGCGACTTCAATCTTTTTAATTGCA
2159 ATAC
196 ATAC
* * **
2163 CAGGGAAGCAAGATTCGCCGTCGTAGCTTTGGTCTGCTCCACTGTACTGCCAGGGAAG
1 CAGGGAAGCAAGATTCACCGTCATAGCTTTAATCTGCTCCACTGTACTGCCAGGGAAG
2221 GTAACTTCAT
Statistics
Matches: 595, Mismatches: 57, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
198 134 0.23
199 457 0.77
200 4 0.01
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (199 bp):
CAGGGAAGCAAGATTCACCGTCATAGCTTTAATCTGCTCCACTGTACTGCCAGGGAAGTGAGATT
CGCCGTTGTGGCTTCAATATCTTTAAATGCAATGTCAGGGAACAAGATTCACCGTTGTAGCTTCA
ATCTGATCCACTGCATCGCCAGGAAAGTAAGATTCACCGTTGCGACTTCAATCTTTTTAATTGCA
ATAC
Found at i:2103 original size:398 final size:397
Alignment explanation
Indices: 1367--2220 Score: 1449
Period size: 398 Copynumber: 2.1 Consensus size: 397
1357 ACTGCAACCT
* * * * * *
1367 CAGGGAAGTAAGATTCGCCGTCATAGCTTCAATCTGCTCCACTACACCGCCAAGGAAAGTAAGAT
1 CAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTATACTGCC-AGGGAAGTAAGAT
* * * *
1432 TTGCCGTTGTGGCTTCGATCTCTTTAATTGCAATGTCGGGGAACAAGATTCACCGTTGTAGCTTA
65 TCGCCGTTGTGGCTTCAATCTCTTTAAATGCAATGTCGGGGAACAAGATCCACCGTTGTAGCTTA
* *
1497 AATCTGATCCACTGCATCGCCAGGAAAGTAAGATTCACTGTTGCGACTTCAATCTTTTTAATGCA
130 AATCTGATCCACTACATCGCCAGGAAAGTAAGATTCACCGTTGCGACTTCAATCTTTTTAATGCA
1562 ATACTAGGGAAGCAAGATTCACTGTCATAGCTTTAATCTGCTCCGCTGTATTGCCAGGGAAGTGA
195 ATACTAGGGAAGCAAGATTCACTGTCATAGCTTTAATCTGCTCCGCTGTATTGCCAGGGAAGTGA
1627 GATTCGCCGTTGTGGCTTCAATATCTTTAAATGTAATGTCAGGGAACAAGATTCACCGTTGTAGC
260 GATTCGCCGTTGTGGCTTCAATATCTTTAAATGTAATGTCAGGGAACAAGATTCACCGTTGTAGC
*
1692 TTCAATCTGATCCACTGCATCGCCAGGAAAGTAAGATTCACTGTTGCGACTTCAATCTTTTTAAT
325 TTCAATCTGATCCACTGCATCGCCAGGAAAGTAAGATTCACCGTTGCGACTTCAATCTTTTTAAT
1757 TGCAATAC
390 TGCAATAC
* *
1765 CAGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTATACTGCCAGGGAAGTGAGATT
1 CAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTATACTGCCAGGGAAGTAAGATT
* *
1830 CGCCGTTGTGGCTTCAATCTCTTTAAAAT-CAATGTCGGGGAACAAGATCCGCCGTTGTAGCTTC
66 CGCCGTTGTGGCTTCAATCTCTTT-AAATGCAATGTCGGGGAACAAGATCCACCGTTGTAGCTTA
* *
1894 AATCTGATCCACTACATCGCTAGGAAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTTAATTGC
130 AATCTGATCCACTACATCGCCAGGAAAGTAAGATTCACCGTTGCGACTTCAATCTTTTTAA-TGC
1959 AATACTAGGGAAGCAAGATTCACTGTCATAGCTTTAATCTGCTCCGCTGTATTGCCAGGGAAGTG
194 AATACTAGGGAAGCAAGATTCACTGTCATAGCTTTAATCTGCTCCGCTGTATTGCCAGGGAAGTG
2024 AGATTCGCCGTTGTGGCTTCAATATCTTTAAATGTAATGTCAGGGAACAAGATTCACCGTTGTAG
259 AGATTCGCCGTTGTGGCTTCAATATCTTTAAATGTAATGTCAGGGAACAAGATTCACCGTTGTAG
* **
2089 CTTCAATCTGATCCACTGCATCGCCAGGAAAGTAAGATTCGCCGTTGCGGTTTCAATCTTTTTAA
324 CTTCAATCTGATCCACTGCATCGCCAGGAAAGTAAGATTCACCGTTGCGACTTCAATCTTTTTAA
2154 TTGCAATAC
389 TTGCAATAC
** *
2163 CAGGGAAGCAAGATTCGCCGTCGTAGCTTTGGTCTGCTCCACTGTACTGCCAGGGAAG
1 CAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTATACTGCCAGGGAAG
2221 GTAACTTCAT
Statistics
Matches: 428, Mismatches: 26, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
397 123 0.29
398 305 0.71
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (397 bp):
CAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTATACTGCCAGGGAAGTAAGATT
CGCCGTTGTGGCTTCAATCTCTTTAAATGCAATGTCGGGGAACAAGATCCACCGTTGTAGCTTAA
ATCTGATCCACTACATCGCCAGGAAAGTAAGATTCACCGTTGCGACTTCAATCTTTTTAATGCAA
TACTAGGGAAGCAAGATTCACTGTCATAGCTTTAATCTGCTCCGCTGTATTGCCAGGGAAGTGAG
ATTCGCCGTTGTGGCTTCAATATCTTTAAATGTAATGTCAGGGAACAAGATTCACCGTTGTAGCT
TCAATCTGATCCACTGCATCGCCAGGAAAGTAAGATTCACCGTTGCGACTTCAATCTTTTTAATT
GCAATAC
Found at i:3498 original size:18 final size:18
Alignment explanation
Indices: 3477--3513 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
3467 CTTTTTGTTG
3477 TTCTTTTCT-TTTCTTTTT
1 TTCTTTT-TGTTTCTTTTT
3495 TTCTTTTTGTTTCTTTTT
1 TTCTTTTTGTTTCTTTTT
3513 T
1 T
3514 CAAGTGAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 1 0.06
18 17 0.94
ACGTcount: A:0.00, C:0.14, G:0.03, T:0.84
Consensus pattern (18 bp):
TTCTTTTTGTTTCTTTTT
Found at i:4008 original size:17 final size:16
Alignment explanation
Indices: 3962--4009 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 16
3952 TTTTCTCTTG
*
3962 TTTTTGCTTTTATTTTTT
1 TTTTTGC-TTT-TTTATT
*
3980 TTTTTGGTTTTTTATT
1 TTTTTGCTTTTTTATT
3996 TTTTTGCTCTTTTT
1 TTTTTGCT-TTTTT
4010 TGGCCTCACT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
16 12 0.46
17 8 0.31
18 6 0.23
ACGTcount: A:0.04, C:0.06, G:0.08, T:0.81
Consensus pattern (16 bp):
TTTTTGCTTTTTTATT
Found at i:4008 original size:18 final size:17
Alignment explanation
Indices: 3962--4010 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
3952 TTTTCTCTTG
*
3962 TTTTTGCTTTTATTTTTT
1 TTTTTGCTTTT-TTTATT
*
3980 TTTTTG-GTTTTTTATT
1 TTTTTGCTTTTTTTATT
3996 TTTTTGCTCTTTTTT
1 TTTTTGCT-TTTTTT
4011 GGCCTCACTG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 11 0.42
17 3 0.12
18 12 0.46
ACGTcount: A:0.04, C:0.06, G:0.08, T:0.82
Consensus pattern (17 bp):
TTTTTGCTTTTTTTATT
Found at i:7324 original size:402 final size:402
Alignment explanation
Indices: 6580--7368 Score: 1551
Period size: 402 Copynumber: 2.0 Consensus size: 402
6570 TCCATTGCAT
6580 TTGTTTGACGTCGAGTACCGTAGTGATATTTGGTTGGTGGATTCTTGTTGGTTTCCAGGGTAACT
1 TTGTTTGACGTCGAGTACCGTAGTGATATTTGGTTGGTGGATTCTTGTTGGTTTCCAGGGTAACT
6645 GAAATAATTTTACCTAATTAGGGTCATTTTGTGAAAATCTAATGCCTATGATGCAATGTAATGCA
66 GAAATAATTTTACCTAATTAGGGTCATTTTGTGAAAATCTAATGCCTATGATGCAATGTAATGCA
*
6710 AATGCATGGAATGAATGCAAAAAGAGACATTGATTATTGGTTCAATTCTATTACAACAACTTTAC
131 AATGCATGGAATGAATGCAAAAAGAGACATTGATGATTGGTTCAATTCTATTACAACAACTTTAC
*
6775 TAGAAAACAAATCTCTTTACATAAAGTGGATATATATACGGCTTTGCCTCCATAGGCGAAGGTAT
196 TAGAAAACAAATCTCTTTACATAAAGTGGATATATATAAGGCTTTGCCTCCATAGGCGAAGGTAT
*
6840 CAATCCCTTTCTTCATACCCGGATGTTAAAATCAAATCTCATCAATTTTCTAAAAAAGGTGTATC
261 CAATCCCTTTCTTCATACCCAGATGTTAAAATCAAATCTCATCAATTTTCTAAAAAAGGTGTATC
6905 TTCTATCTCTTTTTTGCTTGATCCGGGCCACGACTCGTTGCTCACTCATCCTTGTCAGCTTGGTT
326 TTCTATCTCTTTTTTGCTTGATCCGGGCCACGACTCGTTGCTCACTCATCCTTGTCAGCTTGGTT
6970 GGTGGTGGATTC
391 GGTGGTGGATTC
6982 TTGTTTGACGTCGAGTACCGTAGTGATATTTGGTTGGTGGATTCTTGTTGGTTTCCAGGGTAACT
1 TTGTTTGACGTCGAGTACCGTAGTGATATTTGGTTGGTGGATTCTTGTTGGTTTCCAGGGTAACT
7047 GAAATAATTTTACCTAATTAGGGTCATTTTGTGAAAATCTAATGCCTATGATGCAATGTAATGCA
66 GAAATAATTTTACCTAATTAGGGTCATTTTGTGAAAATCTAATGCCTATGATGCAATGTAATGCA
7112 AATGCATGGAATGAATGCAAAAAGAGACATTGATGATTGGTTCAATTCTATTACAACAACTTTAC
131 AATGCATGGAATGAATGCAAAAAGAGACATTGATGATTGGTTCAATTCTATTACAACAACTTTAC
7177 TAGAAAACAAATCTCTTTACATAAAGTGGATATATATAAGGCTTTGCCTCCATAGGCGAAGGTAT
196 TAGAAAACAAATCTCTTTACATAAAGTGGATATATATAAGGCTTTGCCTCCATAGGCGAAGGTAT
7242 CAATCCCTTTCTTCATACCCAGATGTTAAAATCAAATCTCATCAATTTTCTAAAAAAGGTGTATC
261 CAATCCCTTTCTTCATACCCAGATGTTAAAATCAAATCTCATCAATTTTCTAAAAAAGGTGTATC
7307 TTCTATCTCTTTTTTGCTTGATCCGGGCCACGACTCGTTGCTCACTCATCCTTGTCAGCTTG
326 TTCTATCTCTTTTTTGCTTGATCCGGGCCACGACTCGTTGCTCACTCATCCTTGTCAGCTTG
7369 AATCATCGGA
Statistics
Matches: 384, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
402 384 1.00
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.35
Consensus pattern (402 bp):
TTGTTTGACGTCGAGTACCGTAGTGATATTTGGTTGGTGGATTCTTGTTGGTTTCCAGGGTAACT
GAAATAATTTTACCTAATTAGGGTCATTTTGTGAAAATCTAATGCCTATGATGCAATGTAATGCA
AATGCATGGAATGAATGCAAAAAGAGACATTGATGATTGGTTCAATTCTATTACAACAACTTTAC
TAGAAAACAAATCTCTTTACATAAAGTGGATATATATAAGGCTTTGCCTCCATAGGCGAAGGTAT
CAATCCCTTTCTTCATACCCAGATGTTAAAATCAAATCTCATCAATTTTCTAAAAAAGGTGTATC
TTCTATCTCTTTTTTGCTTGATCCGGGCCACGACTCGTTGCTCACTCATCCTTGTCAGCTTGGTT
GGTGGTGGATTC
Done.